1      -     51
UN15159        --> CTTGCAGATTGTGAGCAATAGACAATAATAGGCAAAAGAACCAGGTTCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774067       <-- CTTGCAGATTGTGAGCAATAGACAATAATAAGCAAAAGAACCAGGTTCCT
FD965367       <-- CTTGCAGATTGTGAGCAATAGACAATAATAGGCAAAAGAACCAGGTTCCT
FD947954       <-- ....................................AGAACCAGGTTCCT
EX777826       --> CTTGCAGATTGTGAGCAATAGACAATAATAAGCAAAAGAACCAGGTTCCT
FD961131       --> CTTGCAGATTGTGAGCAATAGACAATAATAGGCAAAAGAACCAGGTTCCT
FD943807       --> ..........................agTAGGCAAA-GAACCAGGTTCCT
FD574940       --> ...............................ggcAAAGAACCAGGTTCCT

               51     -    101
UN15159        --> TCAAAAGCACAACACCTTTATTCCCATGTTGTAAGCTTACAACTCAAATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774067       <-- TCAAAAGCACAACACCTTTATTCCCATGTTGTAAGCTTACAACTCAAATA
FD965367       <-- TCAAAAGCACAACACCTTTATTCCCATGTTGTAAGCTTACAACTCAAATA
FD947954       <-- TCAAAAGCACAACACCTTTATTCCCATGTTGTAAGCTTACAACTCAAATA
EX777826       --> TCAAAAGCACAACACCTTTATTCCCATGTTGTAAGCTTACAACTCAAATA
FD961131       --> TCAAAAGCACAACACCTTTATTCCCATGTTGTAAGCTTACAACTCAAATA
FD943807       --> TCAAAAGCACAACACCTTTATTCCCATGTTGTAAGCTTACAACTCAAATA
FD574940       --> TCAAAAGCACAACACCTTTATTCCCATGTTGTAAGCTTACAACTCAAATA

               101    -    151
UN15159        --> AAGACAAGAGAGACTTTAAGGGATATAA--GA-AAA-A--AAGTCGGCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774067       <-- AAGACAAGAGAGACTTTAAGGGATATAA--GA-AAA-A--AAGTCGGCAA  Raphanus raphanistrum subsp. landra
FD965367       <-- AAGACAAGAGAGACTTTAAGGGATATAA--GA-AAA-A--AAGTCGGCAA  Raphanus raphanistrum subsp. maritimus
FD947954       <-- AAGA--CGAGAGACTTTAAGGGATATAA--AACAAA-AGAAAGTCGGCAA  Raphanus sativus cv Early Scarlet Globe
EX777826       --> AAGACAAGAGAGACTTTAAGGGATATAA--GA-AAA-A--AAGTCGGCAA  Raphanus raphanistrum subsp. landra
FD961131       --> AAGACAAGAGAGACTTTAAGGGATATAA--GA-AAA-A--AAGTCGGCAA  Raphanus raphanistrum subsp. maritimus
FD943807       --> AAGAC--GAGAGACTTTAAGGGATATAAAACA-AAAGA--AAGTCGGCAA  Raphanus sativus cv Early Scarlet Globe
FD574940       --> AAGAC--GAGGGACTTTAAGGGATATAAAACA-AAAGA--AAGTCGGCAA  Raphanus sativus cv Early Scarlet Globe

               151    -    201
UN15159        --> AGATAATGAGTCCTAATGCTTCAGGAACGGTAAAGTGCTACCAAAGGGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774067       <-- AGATAATGAGTCCTAATGCTTCAGGAACGGTAAAGTGCTACCAAAGGGAT  Raphanus raphanistrum subsp. landra
FD965367       <-- AGATAATGAGTCCTAATGCTTCAGGAACGGTAAAGTGCTACCAAAGGGAT  Raphanus raphanistrum subsp. maritimus
FD947954       <-- AGAAAATGAGTCCTAATGCTTCAGGAACGGTAA-GTGCTACCAAAGGGAT  Raphanus sativus cv Early Scarlet Globe
EX777826       --> AGATAATGAGTCCTAATGCTTCAGGAACGGTAAAGTGCTACCAAAGGGAT  Raphanus raphanistrum subsp. landra
FD961131       --> AGATAATGAGTCCTAATGCTTCAGGAACGGTAAAGTGCTACCAAAGGGAT  Raphanus raphanistrum subsp. maritimus
FD943807       --> AGAAAATGAGTCCTAATGCTTCAGGAACGGTAA-GTGCTACCAAAGGGAT  Raphanus sativus cv Early Scarlet Globe
FD574940       --> AGAAAATGAGTCCTAATGCTTCAGGAACGGTAA-GTGCTACCAAAGGGAT  Raphanus sativus cv Early Scarlet Globe

               201    -    251
UN15159        --> TACTCAGTCATCTTCCTCTTCCAGGAAAGGAAGGG-ATCTAAGAAGAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774067       <-- TACTCAGTCATCTTCCTCTTCCAGGAAAGGAAGGG-ATCTAAGAAGAAGG  Raphanus raphanistrum subsp. landra
FD965367       <-- TACTCAGTCATCTTCCTCTTCCAGGAAAGGAAGGG-ATCTAAGAAGAAGG  Raphanus raphanistrum subsp. maritimus
FD947954       <-- TACTCAGTCATCTTCCTCTTCCAGGAAAGGAAGGGGATCTAAGAAGAAGG  Raphanus sativus cv Early Scarlet Globe
EX777826       --> TACTCAGTCATCTTCCTCTTCCAGGAAAGGAAGGG-ATCTAAGAAGAAGG  Raphanus raphanistrum subsp. landra
FD961131       --> TACTCAGTCATCTTCCTCTTCCAGGAAAGGAAGGG-ATCTAAGAAGAAGG  Raphanus raphanistrum subsp. maritimus
FD943807       --> TACTCAGTCATCTTCCTCTTCCAGGAAAGGAAGGGGATCTAAGAAGAAGG  Raphanus sativus cv Early Scarlet Globe
FD574940       --> TACTCAGTCACCTTCCTCTTCCAGGAAAGGAAGGGGATCTAAGAAGAAGG  Raphanus sativus cv Early Scarlet Globe

               251    -    301
UN15159        --> GGAAGGCTTGAAAGTGTAAGGCTGAGGGAGTGACATTGGACCTTTCCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774067       <-- GGAAGGCTTGAAAGTGTAAGGCTGAGGGAGTGACATTGGACCTTTCCTCT
FD965367       <-- GGAAGGCTTGAAAGTGTAAGGCTGAGGGAGTGACATGGGACCTTTCCTCT
FD947954       <-- GGAAGGCTTGAAAGTGTAAGGCTGAGGGAGTGACATTGGACCTTTCCTCT
EX777826       --> GGAAGGCTTGAAAGTGTAAGGCTGAGGGAGTGACATTGGACCTTTCCTCT
FD961131       --> GGAAGGCTTGAAAGTGTAAGGCTGAGGGAGTGACATGGGACCTTTCCTCT
FD943807       --> GGAAGGCTTGAAAGTGTAAGGCTGAGGGAGTGACATTGGACCTTTCCTCT
FD574940       --> GGAAGGCTTGAAAGTGTAAGGCTGAGGGAGTGACATTGGACCTTTCCTCT

               301    -    351
UN15159        --> CATCTCCATCATCTAACAGCCTCTGGACTCTCTTGTTCCGACAGTACTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774067       <-- CATCTCCATCATCTAACAGCCTCTGGACTCTCTTGTTCCGACAGTACTCC  Raphanus raphanistrum subsp. landra
FD965367       <-- CATCTCCATCATCTAACAGCCTCTGGACTCTCTTGTTCCGACAGTACTCC  Raphanus raphanistrum subsp. maritimus
FD947954       <-- CATCTCCATCATCTAACAGCCTTTGGACTCTCTTGTTCCGACAGTACTCC  Raphanus sativus cv Early Scarlet Globe
EX777826       --> CATCTCCATCATCTAACAGCCTCTGGACTCTCTTGTTCCGACAGTACTCC  Raphanus raphanistrum subsp. landra
FD961131       --> CATCTCCATCATCTAACAGCCTCTGGACTCTCTTGTTCCGACAGTACTCC  Raphanus raphanistrum subsp. maritimus
FD943807       --> CATCTCCATCATCTAACAGCCTTTGGACTCTCTTGTTCCGACAGTACTCC  Raphanus sativus cv Early Scarlet Globe
FD574940       --> CATCTCCATCATCTAACAGCCTTTGGACTCTCTTGTTCCGACAGTACTCC  Raphanus sativus cv Early Scarlet Globe

               351    -    401
UN15159        --> CTATCGAAATGCTTCACCCAGGAGGAGCGGCAGTTCTTGACGAACTCTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774067       <-- CTATCGAAATGCTTCACCCAGGAGGAGCGGCAGTTCTTGACGAACTCTGT  Raphanus raphanistrum subsp. landra
FD965367       <-- CTATCGAAATGCTTCACCCAGGAGGAGCGGCAGTTCTTGACGAACTCTGT  Raphanus raphanistrum subsp. maritimus
FD947954       <-- CTATCGAAATGCTTCACCCAGGAGGAGCGGCAGTTCTTGACAAACTCTGT  Raphanus sativus cv Early Scarlet Globe
EX777826       --> CTATCGAAATGCTTCACCCAGGAGGAGCGGCAGTTCTTGACGAACTCTGT  Raphanus raphanistrum subsp. landra
FD961131       --> CTATCGAAATGCTTCACCCAGGAGGAGCGGCAGTTCTTGACGAACTCTGT  Raphanus raphanistrum subsp. maritimus
FD943807       --> CTATCGAAATGCTTCACCCAGGAGGAGCGGCAGTTCTTGACAAACTCTGT  Raphanus sativus cv Early Scarlet Globe
FD574940       --> CTATCGAAATGCTTCACCCAGGAGGAGCGGCAGTTCTTGACAAACTCTGT  Raphanus sativus cv Early Scarlet Globe

               401    -    451
UN15159        --> TCTGGAAAGGCTGCACTCTTTAGGGTAGAGAAGACCTACGGACGCGATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774067       <-- TCTGGAAAGGCTGCACTCTTTAGGGTAGAGAAGACCTACGGACGCGATCT
FD965367       <-- TCTGGAAAGGCTGCACTCTTTAGGGTAGAGAAGACCTACGGACGCGATCT
FD947954       <-- TCTGGAAAGGCTGCACTCTTTAGGGTAGAGAAGACCTACGGACGCGATCT
EX777826       --> TCTGGAAAGGCTGCACTCTTTAGGGTAGAGAAGACCTACGGACGCGATCT
FD961131       --> TCTGGAAAGGCTGCACTCTTTAGGGTAGAGAAGACCTACGGACGCGATCT
FD943807       --> TCTGGAAAGGCTGCACTCTTTAGGGTAGAGAAGACCTACGGACGCGATCT
FD574940       --> TCTGGAAAGGCTGCACTCTTTAGGGTAGAGAAGACCTACGGACGCGATCT

               451    -    501
UN15159        --> CAGTTGGTTTTTTACCAGATTCCTTCTCCAGACAAGTGTAAAAAGCATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774067       <-- CAGTTGGTTTCTTACCAGATTCCTTCTCCAGACAAGTGTAAAAAGCATCT  Raphanus raphanistrum subsp. landra
FD965367       <-- CAGTTGGTTTCTTACCAGATTCCTTCTCCAGACAAGTGTAAAAAGCATCT  Raphanus raphanistrum subsp. maritimus
FD947954       <-- CAGTGGGTTTTTTACCAGATTCCTTCTCCAGACAAGTGTAAAAAGCATCT  Raphanus sativus cv Early Scarlet Globe
EX777826       --> CAGTTGGTTTCTTACCAGATTCCTTCTCCAGACAAGTGTAAAAAGCATCT  Raphanus raphanistrum subsp. landra
FD961131       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD943807       --> CAGTGGGTTTTTTACCAGATTCCTTCTCCAGACAAGTGTAAAAAGCATCT  Raphanus sativus cv Early Scarlet Globe
FD574940       --> CAGTGGGTTTTTTACCAGATTCCTTCTCCAGACAAGTGTAAAAAGCATCT  Raphanus sativus cv Early Scarlet Globe

               501    -    551
UN15159        --> CTTGCCTTGTAGCAAGCGTCTCTAGATTTCTGAAGAACGTCCTCGTGAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774067       <-- CTTGCCTTGTAGCAAGCATCTCTAGATTTCTGAAGAACGTCCTCGTGAAC  Raphanus raphanistrum subsp. landra
FD965367       <-- CTTGCCTTGTAGCAAGCATCTCTAGATTTCTGAAGAACGTCCTCGTGAAC  Raphanus raphanistrum subsp. maritimus
FD947954       <-- CTTGCCTTGTAGCAAGCGTCTCTAGATTTCTGAAGAACGTCCTCGTGAAC  Raphanus sativus cv Early Scarlet Globe
EX777826       --> CTTGCCTTGTAGCAAGCATCTCTAGATTTCTGAAGAACGTCCTCGTGAAC  Raphanus raphanistrum subsp. landra
FD961131       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD943807       --> CTTGCCTTGTAGCAAGCGTCTCTAGATTTCTGAAGAACGTCCTCGTGAAC  Raphanus sativus cv Early Scarlet Globe
FD574940       --> CTTGCCTTGTAGCAAGCGTCTCTAGATTTCTGAAGAACGTCCTCGTGAAC  Raphanus sativus cv Early Scarlet Globe

               551    -    601
UN15159        --> CTGATTAGGGTTCGACGAAGCATAAGCATCGAGCACCATGTTTT----AG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774067       <-- CTGATTAGGGTTCGACGAAGCATAAGCATCGAGCACCATGTTTT----AG
FD965367       <-- CTGATTAGGGTTCGACGAAGCATAAGCATCGAGCACCATGTTTT----AG
FD947954       <-- CTGATTAGGGTTCGACGAAGCATAAGCATCGAGCACCATGTTTAGCAGAG
EX777826       --> CTGATTAGGGTTCGACGAAGCATAAGCATCGAGCACCATGTTTT----AG
FD961131       --> ..................................................
FD943807       --> CTGATTAGGGTTCGACGAAGCATAAGCATCGAGCACCATGTTT-----AG
FD574940       --> CTGATTAGGGTTCGACGAAGCATAAGCATCG...................

               601    -    651
UN15159        --> CAG--CGACGGTGAGAAGAAGAAACGATTAGCCGGTCGTCC....
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774067       <-- CAG--CGACGGTGAGAAGAAGAAACGATTAGCCGGTCGTCC....
FD965367       <-- CAG--CGACGGTGAGAAGAAGAAACGATTAGCCGGTCGaacgtcc
FD947954       <-- CAGAGCGACGGTGAGAAGAAGAAACcc..................
EX777826       --> CAG--CGACGGTGAGAAGAAGAAACGATTAGCCGGTCGTCC....
FD961131       --> .............................................
FD943807       --> CAGagcagagcgacggtgagaag......................
FD574940       --> .............................................