1      -     51
UN15173        --> GAGACAAAAGTGATTACTCCTCCCTCCACTTGTTTGGTCAAAAAGAAAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW719131       <-- .........ggGATTACTCCTCCCTCCACTTGTTTGGTCAAAAAGAAAAT
FD975866       <-- .....................CCCTCCACTTGTTTGGTCAAAAAGAAAAT
EY896650       <-- ..................................................
FD979895       --> GAGACAAAAGTGATTACTCATCCCTCCACTTGTTTGGTCAAAAAGAAAAT
EW714938       --> .........ggGATTACTCCTCCCTCCACTTGTTTGGTCAAAAAGAAAAT
EY901310       --> .......................ggCCACTTGTTTGGTCAAAAAGAAAAT
EV527949       --> ..........................gACTTGTTTGGTCAAAAAGAAAAT
FY442841       --> ...............................................AAT
FD571095       --> ..................................................

               51     -    101
UN15173        --> GGAAGCGGCGGCGACGAAGCAGAGCGTTACAAACCGACTTCTGACCGTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW719131       <-- GGAGGCGGCGACGACGAAGCAGAGCGTTACAAACCGACTTCTGACCGTGA  Raphanus sativus var. oleiformis
FD975866       <-- GGAAGCGGCGGCGACGAAGCAGAGCGTTACAAACCGACTTCTCACCGTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY896650       <-- ......GGCGGCGACGAAGCAGAGCGTTACAAACCGACTTCTGACCGTGA  Raphanus raphanistrum subsp. maritimus
FD979895       --> GGAAGCGGCGGCGACGAAGCAGAGCGTTACAAACCGACTTCTCACCGTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW714938       --> GGAGGCGGCGACGACGAAGCAGAGCGTTACAAACCGACTTCTGACCGTGA  Raphanus sativus var. oleiformis
EY901310       --> GGAAGCGGCGGCGACGAAGCAGAGCGTTACAAACCGACTTCTGACCGTGA  Raphanus raphanistrum subsp. maritimus
EV527949       --> GGAAGCGGCGGCGACGAAGCAGGGCGTTACAAACCGACTTCTCACCGTGA  Raphanus raphanistrum subsp. maritimus
FY442841       --> GGA-GCGGCGGCGACGAAGCAGAGCGTTACAAACCGACTTCTCACCGTGA  Raphanus sativus cv GSK3-1
FD571095       --> ..................................................  Raphanus sativus cv Early Scarlet Globe

               101    -    151
UN15173        --> AGTCAGCCTCCGGCAAGACTTACAGCCAATTAGCGGAGGAGACAGGTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW719131       <-- AGTCAGCCTCCGGCAAGACTTACAGCCAATTAGCGGAGGAGACAGGTCTC
FD975866       <-- AGTCAGCCTCCGGCAAGACTTACAGCCAATTAGCGGAGGAGACAGGTCTC
EY896650       <-- AGTCAGCCTCCGGCAAGACTTACAGCCAATTAGCGGAGGAGACAGGTCTC
FD979895       --> AGTCAGCCTCCGGCAAGACTTACAGCCAATTAGCGGAGGAGACAGGTCTC
EW714938       --> AGTCAGCCTCCGGCAAGACTTACAGCCAATTAGCGGAGGAGACAGGTCTC
EY901310       --> AGTCAGCCTCCGGCAAGACTTACAGCCAATTAGCGGAGGAGACAGGTCTC
EV527949       --> AGTCAGCCTCCGGCAAGACTTACAGCCAATTAGCGGAGGAGACAGGTCTC
FY442841       --> AGTCAGCCTCCGGCAAGACTTACAGCCAATTAGCGGAGGAGACAGGTCTC
FD571095       --> .......................gGCCAATTAGCGGAGGAGACAGGTCTC

               151    -    201
UN15173        --> ACCAACGTCTACGTGGCTCAGCTGCTCCGTCGCCAAGCCCAGCTCAAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW719131       <-- ACCAACGTCTACGTAGCTCAGCTGCTCCGTCGCCAAGCCCAGCTCAAACC
FD975866       <-- ACCAACGTCTACGTGGCTCAGCTGCTCCGTCGCCAAGCCCAGCTCAAACC
EY896650       <-- ACCGACGTCTACGTGGCTCAGCTTCTCCGTCGCCAAGCCCAGCTCAAACC
FD979895       --> ACCAACGTCTACGTGGCTCAGCTGCTCCGTCGCCAAGCCCAGCTCAAACC
EW714938       --> ACCAACGTCTACGTAGCTCAGCTGCTCCGTCGCCAAGCCCAGCTCAAACC
EY901310       --> ACCGACGTCTACGTGGCTCAGCTTCTCCGTCGCCAAGCCCAGCTCAAACC
EV527949       --> ACCAACGTCTACGTGGCTCAGCTGCTCCGTCGCCAAGCCCAGCTCAAACC
FY442841       --> ACCAACGTCTACGTGGCTCAGCTGCTCCGTCGCCAAGCCCAGCTCAAACC
FD571095       --> ACCAACGTCTACATGGCCCAGCTTCTCCGTCGCCAAGCCCAGCTCAAACC

               201    -    251
UN15173        --> CGACACTGTCCCAAAGCTCCGTGAAGCTTTGCCTGCTCTGACCGACGAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW719131       <-- CGACACTGTCCCAAAGCTCCGTGAAGCTTTGCCTGCTCTGAACGACGAAC  Raphanus sativus var. oleiformis
FD975866       <-- CGACACAGTCCCAAAGCTCCGTGAAGCTTTACCTGCTCTGACCGACGAAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY896650       <-- CGACACTGTCCCAAAGCTCCGTGAAGCTTTGCCTGCTCTGACCGACGAAC  Raphanus raphanistrum subsp. maritimus
FD979895       --> CGACACAGTCCCAAAGCTCCGTGAAGCTTTACCTGCTCTGACCGACGAAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EW714938       --> CGACACTGTCCCAAAGCTCCGTGAAGCTTTGCCTGCTCTGAACGACGAAC  Raphanus sativus var. oleiformis
EY901310       --> CGACACTGTCCCAAAGCTCCGTGAAGCTTTGCCTGCTCTGACCGACGAAC  Raphanus raphanistrum subsp. maritimus
EV527949       --> CGACACAGTCCCAAAGCTCCGTGAAGCTTTACCTGCTCTGACCGACGAAC  Raphanus raphanistrum subsp. maritimus
FY442841       --> CGACACAGTCCCAAAGCTCCGTGAAGCTTTGCCTGCCCTGACCGACGAAC  Raphanus sativus cv GSK3-1
FD571095       --> CGACACTGTCCCAAAGCTCCGTGAAGCTTTACCTGCTCTGACCGACGAAC  Raphanus sativus cv Early Scarlet Globe

               251    -    301
UN15173        --> TCATCGCCGCCATGATGTCTCCTCCGTGGAGATCATATGATCCAAACCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW719131       <-- TCATCGCCGCCATGATGTCTCCTCCGTGGAGATCATATGATCCAAACCTT
FD975866       <-- TCATCGCCGCCATGATGTCTCCTCCGTGGAGATCATATGATCCAAACCTT
EY896650       <-- TCATCGCCGCCATGATGTCTCCTCCGTGGAGATCATATGATCCAAACCTT
FD979895       --> TCATCGCCGCCATGATGTCTCCTCCGTGGAGATCATATGATCCAAACCTT
EW714938       --> TCATCGCCGCCATGATGTCTCCTCCGTGGAGATCATATGATCCAAACCTT
EY901310       --> TCATCGCCGCCATGATGTCTCCTCCGTGGAGATCATATGATCCAAACCTT
EV527949       --> TCATCGCCGCCATGATGTCTCCTCCGTGGAGATCATATGATCCAAACCTT
FY442841       --> TAATCGCTGCCATGGTGTCTCCTCCGTGGAGATCATATGATCCAAACCTT
FD571095       --> TCATCGCCGCCATGATGTCTCCTCCGTGGAGATCATATGATCCAAACCTT

               301    -    351
UN15173        --> ATCCAAGAACCTACCGTCTACAGGTTGAACGAAGCAGTGATGCATTTCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW719131       <-- ATCCAGGAACCTACCGTCTACAGGTTGAACGAAGCAGTGATGCATTTCGG
FD975866       <-- ATCCAAGAACCTACCGTCTACAGGTTGAACGAAGCAGTGATGCATTTCGG
EY896650       <-- ATCCAAGAACCTACCGTCTACAGGTTGAATGAAGCAGTGATGCATTTCGG
FD979895       --> ATCCAAGAACCTACCGTCTACAGGTTGAACGAAGCAGTGATGCATTTCGG
EW714938       --> ATCCAGGAACCTACCGTCTACAGGTTGAACGAAGCAGTGATGCATTTCGG
EY901310       --> ATCCAAGAACCTACCGTCTACAGGTTGAATGAAGCAGTGATGCATTTCGG
EV527949       --> ATCCAAGAACCTACCGTCTACAGGTTGAACGAAGCAGTGATGCATTTCGG
FY442841       --> ATCCAAGAACCTACCGTCTACAGGTTGAATGAAGCAGTGATGCATTTCGG
FD571095       --> ATCCAAGAACCTACCGTCTACAGGCTGAATGAAGCAGTGATGCATTTCGG

               351    -    401
UN15173        --> TGAGAGTATAAAAGAGATTATCAATGAAGATTTTGGCGATGGCATCATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW719131       <-- TGAGAGTATAAAAGAGATTATCAATGAAGATTTTGGCGATGGCATCATGT
FD975866       <-- TGAGAGTATAAAAGAGATTATCAATGAAGATTTTGGCGATGGCATCATGT
EY896650       <-- TGAGAGTATAAAAGAGATTATCAATGAAGATTTTGGCGATGGCATCATGT
FD979895       --> TGAGAGTATAAAAGAGATTATCAATGAAGATTTTGGCGATGGCATCATGT
EW714938       --> TGAGAGTATAAAAGAGATTATCAATGAAGATTTTGGCGATGGCATCATGT
EY901310       --> TGAGAGTATAAAAGAGATTATCAATGAAGATTTTGGCGATGGCATCATG.
EV527949       --> TGAGAGTATAAAAGAGATTATCAATGAAGATTTTGGCGATGGCATCATGT
FY442841       --> TGAGAGTATAAAAGAGATTATCAATGAAGATTTTGGCGATGGCATCATGT
FD571095       --> TGAGAGTATAAAAGAGATTATCAATGAAGATTTTGGCGATGGCATCATGT

               401    -    451
UN15173        --> CGGCGATAGACTTCTATTGCTCCGTGGACAAAGTTAAAGGAGTGGATGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW719131       <-- CGGCGATAGACTTTTATTGCTCCGTGGACAAAGTTAAAGGAGTGGATGGT
FD975866       <-- CGGCGATAGACTTCTATTGCTCCGTGGACAAAGTTAAAGGAGTGGATGGT
EY896650       <-- CGGCGATAGACTTCTATTGCTCCGTGGACAAAGTTAAAGGAGTGGATGGT
FD979895       --> CGGCGATAGACTTCTATTGCTCCGTGGACAAAGTTAAAGGAGTGGATGGT
EW714938       --> CGGCGATAGACTTTTATTGCTCCGTGGACAAAGTTAAAGGAGTGGATGGT
EY901310       --> ..................................................
EV527949       --> CGGCGATAGACTTCTATTGCTCCGTGGACAAAGTTAAAGGAGTGGATGGT
FY442841       --> CGGCGATAGACTTCTATTGCTCCGTGGACAAAGTTAAAGGAGTGGATGGT
FD571095       --> CGGCGATAGACTTCTATTGCTCCGTGGACAAAGTTAAAGGAGTGGACGGT

               451    -    501
UN15173        --> AATAACCGCGTTGTCGTGACACTTGATGGGAAGTATCTTTCTCATTCCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW719131       <-- AATAACCGCGTTGTCGTGACACTTGATGGAAAGTATCTTTCTCATTCCGA
FD975866       <-- AATAACCGCGTTGTCGTGACACTTGATGGGAAGTATCTTTCTCATTCCGA
EY896650       <-- AATAACCGCGTTGTCGTGACACTTGATGGGAAGTATCTTTCTCATTCCTA
FD979895       --> AATAACCGCGTTGTCGTGACACTTGATGGGAAGTATCTTTCTCATTCCGA
EW714938       --> AATAACCGCGTTGTCGTGACACTTGATGGAAAGTATCTTTCTCATTCCGA
EY901310       --> ..................................................
EV527949       --> AATAACCGCGTTGTCGTGACACTTGATGGGAAGTATCTTTCTCATTCCGA
FY442841       --> AATAACCGCGTTGTCGTGACACTTGATGGGAAGTATCTTTCTCATTCCGA
FD571095       --> AATAACCGCGTTGTCGTGACACTTGATGGGAAGTATCTTTCTCATTCCGA

               501    -    551
UN15173        --> ACAGAGGACGGAGAATATGGTCTCAAGGCTAAACCTCAAGGGAAGTACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW719131       <-- ACAGAGGACGGAGAATATGGTCTCAAGGCTAAACCTCAAGGGAAGTACAA  Raphanus sativus var. oleiformis
FD975866       <-- ACAGAGGACGGAGAATATGGTCTCGAGGCTAAACCTCAAGGGAAGTACAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY896650       <-- ACAGAGGACGGAGAATATGGTCTCAAGGCTAAACCTCAAGGAAAGTACAA  Raphanus raphanistrum subsp. maritimus
FD979895       --> ACAGAGGACGGAGAATATGGTCTCGAGGCTAAACCTCAAGGGAAGTACAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW714938       --> ACAGAGGACGGAGAATATGGTCTCAAGGCTAAACCTCAAGGGAAGTACAA  Raphanus sativus var. oleiformis
EY901310       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV527949       --> ACAGAGGACGGAGAATATGGTCTCGAGGCTAAACCTCAAGGGAAGTACAA  Raphanus raphanistrum subsp. maritimus
FY442841       --> ACAGAGGACGGAGAATATGGTCTCAAGGCTAAACCTCAAGGGAAGTACAA  Raphanus sativus cv GSK3-1
FD571095       --> ACAGAGGACGGAGAATATGGTCTCAAGGCTAAACCTCAAGGGAAGTACAA  Raphanus sativus cv Early Scarlet Globe

               551    -    601
UN15173        --> GCGAATGATATGTAAAATGTAAGAATAAAACGATTCAGATGAATGT-ATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW719131       <-- GCGAATGATATGTAAAATGTAAGAATAAAACGATTCAGATGAATGT-ATG  Raphanus sativus var. oleiformis
FD975866       <-- GCGAATGATATGTAAAATGTAAGAATAAGACGATTCAGATGAATGTTATG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY896650       <-- GCGAATGATATGTAAAATGTAAGAATAAAACGATTCAGATGAATGT-ATG  Raphanus raphanistrum subsp. maritimus
FD979895       --> GCGAATGATATGTAAAATGTAAGAATAAGACGATTCAGATGAATGTTATG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW714938       --> GCGAATGATATGTAAAATGTAAGAATAAAACGATTCAGATGAATGT-ATG  Raphanus sativus var. oleiformis
EY901310       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV527949       --> GCGAATGATATGTAAAATGTAAGAATAAAACGATTCAGATGAATGTTATG  Raphanus raphanistrum subsp. maritimus
FY442841       --> GCGAATGATATGTAAAATGTAAGAATAAAACGATTCAGATGAATGT-ATG  Raphanus sativus cv GSK3-1
FD571095       --> GCGAATGATATGTAAAATGTAAGAAGAAAACGATTCAAATGAATGT-ATG  Raphanus sativus cv Early Scarlet Globe

               601    -    651
UN15173        --> CAGCAATCCATGAAGGCTTTA----TGTCTAAAACTGTAACATTGTACGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW719131       <-- CAGCAATCCATGAAGGCTTTA----TGTCTGAAACTGTAAAATTGTACGA  Raphanus sativus var. oleiformis
FD975866       <-- CAGCAATCCATGAAGGCTTTAATTATGCCTAAAACTGTAACATTGTACGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY896650       <-- AAGCAATCCATGAAGGCCTTA----TGTCTAAAACTGTAACATTGTACGA  Raphanus raphanistrum subsp. maritimus
FD979895       --> CAGCAATCCATGAAGGCTTTAATTATGCCTAAAACTGTAACATTGTACG.  Raphanus raphanistrum subsp. raphanistrum (NY)
EW714938       --> CAGCAATCCATGAAGGCTTTA----TGTCTGAAACTGTAAAATTGTACGA  Raphanus sativus var. oleiformis
EY901310       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV527949       --> CAGCAATCCATGAAGGCTTTAATTATGCCTAAAACTGTAACATTGTACGA  Raphanus raphanistrum subsp. maritimus
FY442841       --> AAGCAATCCATGAAGGCCTTA----TGTCTAAAACTGTAACATTGTACGA  Raphanus sativus cv GSK3-1
FD571095       --> CAGCAATCCATGAAGGCTTTA----TGTCTAAAACTGTAACATTGTACGA  Raphanus sativus cv Early Scarlet Globe

               651    -    701
UN15173        --> TTTATTGGGTTTGTTTATCTGTACTCTATGCAACTCCAGCCTCGAGCTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW719131       <-- TTTATTGGGTTTGTTCATCTGTACTCTATGCAACTCCAGCCTCGAGCTAT
FD975866       <-- TTTATTGGGTTTGTTTATCTGTACTCTATGCAACTCCAGCCTCAAGCTGT
EY896650       <-- TTTATTGGGTTTGTTTATCTGTACTCTATGAAACTCCAGCCTCGAGCTGT
FD979895       --> ..................................................
EW714938       --> TTTATTGGGTTTGTTCATCTGTACTCTATGCAACTCCAGCCTCGAGCTat
EY901310       --> ..................................................
EV527949       --> TTTATTGGGTTTGTTTATCTGTACTCTATGCAACTCCAGCCTCAAGCTGT
FY442841       --> TTTATTGGGTTTGTTTATCTGTACTCTATGCAACTCCAGCCTCAAGCTGT
FD571095       --> TTTATTGGGTTTGTTTATCTGTAATCTATGCAACTCCAACCTCGAGCTGT

               701    -    751
UN15173        --> TTCAGGTT-GAATAAAATAAACACTATGAAACCTTTCTTAGCTTCCTACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW719131       <-- TTCAGGTT-GAATAAAAT................................
FD975866       <-- TCCAGGTT-GAATAAAATAAACACTATGAAACC.................
EY896650       <-- TTCAGGTTTGAATAAAATAAACACTATGAAACCTTT..............
FD979895       --> ..................................................
EW714938       --> t.................................................
EY901310       --> ..................................................
EV527949       --> TCCAGGTT-GAATAAAATAAACACTATGAAACCTTTCTTAt.........
FY442841       --> TTCAGGTT-GAATAAAATAAACACTATGAAACCcag..............
FD571095       --> TTCCGGTT-GAATAAAATAAACACTATGAAACCTTTCTTAGCTTCCTACT

               751    -    801
UN15173        --> CAACATTGCGTGATTTAGTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~
EW719131       <-- ......................
FD975866       <-- ......................
EY896650       <-- ......................
FD979895       --> ......................
EW714938       --> ......................
EY901310       --> ......................
EV527949       --> ......................
FY442841       --> ......................
FD571095       --> CAACATTGCGTGATTTAGTTTT