Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN15211

               1      -     51
UN15211        --> GGCTCTTCCTCTTCGCATTCTCCAATCAGTGTTTGTTGTTTGTTTTGGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434970       <-- ............................................TTGGGT
EX766887       <-- ..................................................
EY944190       <-- ..................................................
EX762670       --> GGCTCTTCCTCTTCGCATTCTCCAATCAGTGTTTGTTGTTTGTTTTGGGT
EV547884       --> ..............GCATTCTCCAATCAGTGTTTGTTGTTTGTTTTGGGT
EV550389       --> ..............GCATTCTCCAATCAGTGTTTGTTGTTTGTTTTGGGT
FY438115       --> ..................................................
FY433006       --> ..................................................
FY430420       --> ..................................................

               51     -    101
UN15211        --> GAAAAAAA-TGAGCGGAGCGGGGAAGAAAGTGGCGGAAGTGGCGTTCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434970       <-- GAAAAAAA-TGAGCGGAGCGGGGAAGAAAGTGGCGGAAGTGGCGTTCAAA
EX766887       <-- .........TGAGCGGAGCGGGGAAGAAAGTGGCGGAAGTGGCGTTCAAA
EY944190       <-- ..................................................
EX762670       --> GAAAAAAAATGAGCGGAGCGGGGAAGAAAGTGGCGGAAGTGGCGTTCAAA
EV547884       --> GAAAAAAA-TGAGCGGAGCGGGGAAGAAAGTGGCGGAAGTGGCGTTCAAA
EV550389       --> GAAAAAAA-TGAGCGGAGCGGGGAAGAAAGTGGCGGAAGTGGCGTTCAAA
FY438115       --> ......AA-TGAGCGGAGCGGGGAAGAA-GTGGCGGAAGTGGCGTTCAAA
FY433006       --> ............................AGTGGCGGAAGTGGCGTTCAA-
FY430420       --> ..................................................

               101    -    151
UN15211        --> GCGTCGAGGACGATAGATTGGGAAGGGATGGCGAAGGTCCTTGTCACCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434970       <-- GCGTCGAGAACGATAGATTGGGAAGGGATGGCGAAGGTCCTTGTCACCGA  Raphanus sativus cv GSK3-1
EX766887       <-- GCGTCGAGGACGATAGATTGGGAAGGGATGGCGAAGGTCCTTGTCACCGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY944190       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX762670       --> GCGTCGAGGACGATAGATTGGGAAGGGATGGCGAAGGTCCTTGTCACCGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV547884       --> GCGTCGAGGACGATAGATTGGGAAGGGATGGCGAAGGTCCTTGTCACCGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV550389       --> GCGTCGAGGACGATAGATTGGGAAGGGATGGCGAAGGTCCTTGTCACCGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY438115       --> GCGTCGAGAACGATAGATTGGGAAGGGATGGCGAAGGTCCTTGTCACCGA  Raphanus sativus cv GSK3-1
FY433006       --> GCGTCGAGAACGATAGATTGGGAAGGGATGGCGAAGGTCCTTGTCACCGA  Raphanus sativus cv GSK3-1
FY430420       --> ............ATAGATTGGGAAGGGATGGCGAAGGTCCTTGTCACCGA  Raphanus sativus cv GSK3-1

               151    -    201
UN15211        --> TGAGGCTCGAAGAGAGTTCTCTAACCTCCGTCGCGCTTTCGATGAGGTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434970       <-- TGAGGCTCGAAGAGAGTTCTCTAACCTCCGTCGCGCTTTCGATGAGGTCA
EX766887       <-- TGAGGCTCGAAGAGAGTTCTCTAACCTCCGTCGCGCTTTCGATGAGGTCA
EY944190       <-- ..................................................
EX762670       --> TGAGGCTCGAAGAGAGTTCTCTAACCTCCGTCGCGCTTTCGATGAGGTCA
EV547884       --> TGAGGCTCGAATAGAGTTCTCTAACCTCCGTCGCGCTTTCGATGAGGTCA
EV550389       --> TGAGGCTCGAAGAGAGTTCTCTAACCTCCGTCGCGCTTTCGATGAGGTCA
FY438115       --> TGAGGCTCGAAGAGAGTTCTCTAACCTCCGTCGCGCTTTCGATGAGGTCA
FY433006       --> TGAGGCTCGAAGAGAGTTCTCTAACCTCCGTCGCGCTTTCGATGAGGTCA
FY430420       --> TGAGGCTCGAAGAGAGTTCTCTAACCTCCGTCGCGCTTTCGATGAGGTCA

               201    -    251
UN15211        --> ACACCCAGCTCCAGACCAAGTTCAGTCAGGAGCCGGAACCCATTGATTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434970       <-- ACACCCAGCTCCAGACCAAGTTCAGTCAGGAGCCGGAACCCATTGATTGG
EX766887       <-- ACACCCAGCTCCAGACCAAGTTCAGTCAGGAGCCGGAACCCATTGATTGG
EY944190       <-- ..................................................
EX762670       --> ACACCCAGCTCCAGACCAAGTTCAGTCAGGAGCCGGAACCCATTGATTGG
EV547884       --> ACACCCAGCTCCAGACCAAGTTCAGTCAGGAGCCGGAACCCATTGATTGG
EV550389       --> ACACCCAGCTCCAGACCAAGTTCAGTCAGGAGCCGGAACCCATTGATTGG
FY438115       --> ACACCCAGCTCCAGACCAAGTTCAGTCAGGAGCCGGAACCCATTGATTGG
FY433006       --> ACACCCAGCTCCAGACCAAGTTCAGTCAGGAGCCGGAACCCATTGATTGG
FY430420       --> ACACCCAGCTCCAGACCAAGTTCAGTCAGGAGCCGGAACCCATTGATTGG

               251    -    301
UN15211        --> GATTTCTACAGAAAGGGTATTGGCTCTGGCATTGTTGACATGTACAAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434970       <-- GATTTCTACAGAAAGGGTATTGGCTCTGGCATTGTTGACATGTACAAGGA
EX766887       <-- GATTTCTACAGAAAGGGTATTGGCTCTGGCATTGTTGACATGTACAAGGA
EY944190       <-- ..................................................
EX762670       --> GATTTCTACAGAAAGGGTATTGGCTCTGGCATTGTTGACATGTACAAGGA
EV547884       --> GATTTCTACAGAAAGGGTATTGGCTCTGGCATTGTTGACATGTACAAGGA
EV550389       --> GATTTCTACAGAAAGGGTATTGGCTCTGGCATTGTTGACATGTACAAGGA
FY438115       --> GATTTCTACAGAAAGGGTATTGGCTCTGGCATTGTTGACATGTACAAGGA
FY433006       --> GATTTCTACAGAAAGGGTATTGGCTCTGGCATTGTTGACATGTACAAGGA
FY430420       --> GATTTCTACAGAAAGGGTATTGGCTCTGGCATTGTTGACATGTACAAGGA

               301    -    351
UN15211        --> AGCTTATGACAGCATTGAGATTCCTAAGTACGTGGACAATGTTACCCCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434970       <-- AGCTTACGACAGCATTGAGATTCCTAAGTACGTGGACAATGTTACCCCTG  Raphanus sativus cv GSK3-1
EX766887       <-- AGCTTATGACAGCATTGAGATTCCTAAGTACGTGGACAATGTTACCCCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY944190       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX762670       --> AGCTTATGACAGCATTGAGATTCCTAAGTACGTGGACAATGTTACCCCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV547884       --> AGCTTATGACAGCATTGAGATTCCTAAGTACGTGGACAATGTTACCCCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV550389       --> AGCTTATGACAGCATTGAGATTCCTAAGTACGTGGACAATGTTACCCCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FY438115       --> AGCTTACGACAGCATTGAGATTCCTAAGTACGTGGACAATGTTACCCCTG  Raphanus sativus cv GSK3-1
FY433006       --> AGCTTACGACAGCATTGAGATTCCTAAGTACGTGGACAATGTTACCCCTG  Raphanus sativus cv GSK3-1
FY430420       --> AGCTTACGACAGCATTGAGATTCCTAAGTACGTGGACAATGTTACCCCTG  Raphanus sativus cv GSK3-1

               351    -    401
UN15211        --> AGTACAAGCCCAAGTTTGATGCTTTGTTGGTGGAACTGAAAGAAGCAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434970       <-- AGTACAAGCCCAAGTTTGATGCTTTGTTGGTGGAACTGAAAGAAGCAGAG  Raphanus sativus cv GSK3-1
EX766887       <-- AGTACAAGCCCAAGTTTGATGCTTTGTTGGCGGAACTGAAAGAAGCAGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY944190       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX762670       --> AGTACAAGCCCAAGTTTGATGCTTTGTTGGCGGAACTGAAAGAAGCAGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV547884       --> AGTACAAGCCCAAGTTTGATGCTTTGTTGGTGGAACTGAAAGAAGCAGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV550389       --> AGTACAAGCCCAAGTTTGATGCTTTGTTGGTGGAACTGAAAGAAGCAGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY438115       --> AGTACAAGCCCAAGTTTGATGCTTTGTTGGTGGAACTGAAAGAAGCAGAG  Raphanus sativus cv GSK3-1
FY433006       --> AGTACAAGCCCAAGTTTGATGCTTTGTTGGTGGAACTGAAAGAAGCAGAG  Raphanus sativus cv GSK3-1
FY430420       --> AGTACAAGCCCAAGTTTGATGCTTTGTTGGTGGAACTGAAAGAAGCAGAG  Raphanus sativus cv GSK3-1

               401    -    451
UN15211        --> CAGAAGTCGCTCAAGGAGTCTGAACGGCTAGAGAAAGAAATTGTTGATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434970       <-- CAGAAGTCGCTCAAGGAGTCTGAACGGCTAGAGAAAGAAATTGTTGATGT
EX766887       <-- CAGAAGTCGCTCAAGGAGTCTGAACGGCTAGAGAAAGAAATTGTTGATGT
EY944190       <-- .......................ACGTCTAGAGAAAGAAATTGTTGATGT
EX762670       --> CAGAAGTCGCTCAAGGAGTCTGAACGGCTAGAGAAAGAAATTGTTGATGT
EV547884       --> CAGAAGTCGCTCAAGGAGTCTGAACGGCTAGAGAAAGAAATTGTTGATGT
EV550389       --> CAGAAGTCGCTCAAGGAGTCTGAACGGCTAGAGAAAGAAATTGTTGATGT
FY438115       --> CAGAAGTCGCTCAAGGAGTCTGAACGGCTAGAGAAAGAAATTGTTGATGT
FY433006       --> CAGAAGTCGCTCAAGGAGTCTGAACGGCTAGAGAAAGAAATTGTTGATGT
FY430420       --> CAGAAGTCGCTCAAGGAGTCTGAACGGCTAGAGAAAGAAATTGTTGATGT

               451    -    501
UN15211        --> TCAAGAGATAAGCAAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434970       <-- TCAAGAGATAAGCAAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTG
EX766887       <-- TCAAGAGATAAGCAAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTG
EY944190       <-- TCAAGAGATAAGCAAAAAGCTCAGCACAATGACCGCAGATGAGTACTTCG
EX762670       --> TCAAGAGATAAGCAAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTG
EV547884       --> TCAAGAGATAAGCAAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTG
EV550389       --> TCAAGAGATAAGCAAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTG
FY438115       --> TCAAGAGATAAGCAAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTG
FY433006       --> TCAAGAGATAAGCAAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTG
FY430420       --> TCAAGAGATAAGCAAAAAGCTCAGCACCATGACTGCAGATGAGTACTTTG

               501    -    551
UN15211        --> AGAAGCACCCAGAACTCAAAAAGAAGTTTGATGACGAAATCCGTAACGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434970       <-- AGAAGCACCCAGAACTCAAAAAGAAGTTTGATGACGAAATCCGTAACGAC
EX766887       <-- AGAAGCACCCAGAACTCAAAAAGAAGTTTGATGACGAAATCCGTAACGAC
EY944190       <-- AGAAGCCCCCAGAACTCAAAAAGAAGTTTGATGACGAAATCCGTAACGAC
EX762670       --> AGAAGCACCCAGAACTCAAAAAGAAGTTTGATGACGAAATCCGTAACGAC
EV547884       --> AGAAGCACCCAGAACTCAAAAAGAAGTTTGATGACGAAATCCGTAACGAC
EV550389       --> AGAAGCACCCAGAACTCAAAA-TAAGTTTGATGACGAAATCCGTAACGAC
FY438115       --> AGAAGCACCCAGAACTCAAAAAGAAGTTTGATGACGAAATCCGTAACGAC
FY433006       --> AGAAGCACCCAGAACTCAAAAAGAAGTTTGATGACGAAATCCGTAACGAC
FY430420       --> AGAAGCACCCAGAACTCAAAAAGAAGTTTGATGACGAAATCCGTAACGAC

               551    -    601
UN15211        --> TACTGGGGATACTGATTCACCATGTTGTATCTCTCTGGCCTGGAAAAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434970       <-- TACTGGGGATACTGATTCACCATGTTGTATCTCTCTGGCCTGGAAAAGAA
EX766887       <-- TACTGGGGATACTGATTCACCATGTTGTATCTCTCTGGCCTGGAAAAGAA
EY944190       <-- TACTGGGGATACTGATTCCCCATGTTGTAT-T-TCTGGCCTGGAAAAGAA
EX762670       --> TACTGGGGATACTGATTCACCATGTTGTATCTCTCTGGCCTGGAAAAGAA
EV547884       --> TACTGGGGATACTGATTCACCATGTTGTATCTCTCTGGCCTGGAAAAGAA
EV550389       --> TACTGGGGATACTGATTCACCATGTTGTATCTCTCTGGCCTGGAAAAGAA
FY438115       --> TATTGGGGATACTGATTCACCATGTTGTATCTCTCTGGCCTGGAAAAGAA
FY433006       --> TACTGGGGATACTGATTCACCATGTTGTATCTCTCTGGCCTGGAAAAGAA
FY430420       --> TACTGGGGATACTGATTCACCATGTTGTATCTCTCTGGCCTGGAAAAGAA

               601    -    651
UN15211        --> ACTCTTTTCTCTTTTTCTTTTGATGTGATTTTGTGAGAGTCGATCCATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434970       <-- ACTCTTTTCTCTTTTTCTTTTGATGTGATTTTGTGAGAGTCGATCCATAT
EX766887       <-- ACTCTTTTCTCTTTTTCTTTTGATGTGATTTTGTGAGAGTCGATCCATAT
EY944190       <-- ACTCTTTCCTCTTTTTCTTTTGATGTGATTTTGTGAGAGTCGATCCATAT
EX762670       --> ACTCTTTTCTCTTTTTCTTTTGATGTGATTTTGTGAGAGTCGATCCATAT
EV547884       --> ACTCTTTTCTCTTTTTCTTTTGATGTGATTTTGTGAGAGTCGATCCATAT
EV550389       --> ACTCTTTTCTCTTTTTCTTTTGATGTGATTTTGTGAGAGTCGATCCATAT
FY438115       --> ACTCTTTTCTCTTTTTCTTTTGATGTGATTTTGTGAGAGTCGATCCATAT
FY433006       --> ACTCTTTTCTCTTTTTCTTTTGATGTGATTTTGTGAGAGTCGATCCATAT
FY430420       --> ACTCTTTTCTCTTTTTCTTTTGATGTGATTTTGTGAGAGTCGATCCATAT

               651    -    701
UN15211        --> AACATAATAAGGACCACTCCATTTACTTTGAGATATTCATTGGAGATCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434970       <-- AACATAATAAGGACCACTCCATTTACTTTGAGATATTCATTGGAGATCCA
EX766887       <-- AACATAATAAGGACCACTCCATTTACTTTGAGATATTCATTGGAGATCCA
EY944190       <-- AACATAATAAGGACCACTCCATTTACTTCGAGATGTTCATTGGAGATCCA
EX762670       --> AACATAATAAGGACCACTCCATTTACTTTGAGATATTCATTGGAGATCCA
EV547884       --> AACATAATAAGGACCACTCCATTTACTTTGAGATATTCATTGGAGATCCA
EV550389       --> AACATAATAAGGACCACTCCATTTACTTTGAGATATTCATTGGAGATCCA
FY438115       --> AACATAATAAGGACCACTCCATTTACTTTGAGATATTCATTGGAGATCCA
FY433006       --> AACATAATAAGGACCACTCCATTTACTTTGAGATATTCATTGGAGATCCA
FY430420       --> AACATAATAAGGACCACTCCATTTACTTTGAGATATTCATTGGAGATCCA

               701    -    751
UN15211        --> ATGAGACAATGACGATAAACCCATTTGGTTTTCAGTTGTCAATGTCATAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434970       <-- ATGAGACAATGACGATAAACCCATTTGGTTTTCAGTTGTCAATGTCATAA
EX766887       <-- ATGAGACAATGACGATAAACCCATTTGGTTTTCGGTTGTCAATGTCATAA
EY944190       <-- ATGAGACAATGACGATAAACCCATTTGGTTTTCAGTTGTCAATGTCATAA
EX762670       --> ATGAGACAtgac......................................
EV547884       --> ATGAGACAATGACGATAAACCCATTTGGTTTTCAGTTGTCAATGTCATAA
EV550389       --> ATGAGACAATGACGATAAACCCATTTGGTTTTCAGTTGTCAACGTCATAA
FY438115       --> ATGAGACAATGACGATAAACCCATTTGGTTTTCAGTTGTCAATGTCATAA
FY433006       --> ATGAGACAATGACGATAAACCCATTTGGTTTTCAGTTGTCAATGTCATAA
FY430420       --> ATGAGACAATGACGATAAACCCATTTGGTTTTCAGTTGTCAATGTCATAA

               751    -    801
UN15211        --> TATTGTTTGTTTCGTTCTAAAGAGAATAATAAGAGTGAAAAGATCTCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434970       <-- TATTGTTTGTTTCGTTCTAAAGAGAATAATAAGAGTGAAAAGATCTCTCA
EX766887       <-- TATTGTTTGTTTC.....................................
EY944190       <-- TATTGTTTGTTTCGTTCTAAAGAGAATAATAAGAGTGAAAAGATCTCTC.
EX762670       --> ..................................................
EV547884       --> TATTGTTTGT........................................
EV550389       --> TATTGTTTG.........................................
FY438115       --> TA................................................
FY433006       --> TATTGTTTGTTTC.....................................
FY430420       --> TATTGTTTGTTTCGTTCT................................

               801    -    851
UN15211        --> AAGTCGG
                   ~~~~~~~
FY434970       <-- AAGTCGG
EX766887       <-- .......
EY944190       <-- .......
EX762670       --> .......
EV547884       --> .......
EV550389       --> .......
FY438115       --> .......
FY433006       --> .......
FY430420       --> .......