1      -     51
UN15240        --> GGAATTCCAAATCTACGAAAAAAATGGCTCTCCGATCTGTCAAAACGCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983065       <-- ..................................................
FD530105       <-- ..................................................
FD960935       <-- ..................................................
EV567451       --> GGAATTCCAAATCTACGAAAAAAATGGCTCTCCGATCTGTCAAAACACCG
FD965108       --> GGAATTCCAAATCTACGAAAAAAATGGCTCTCCGATCTGTCAAAACGCCG
FD534083       --> ............ggACGAAAAAAATGGCTCTCCGATCTGTCAAAACGCCG
FD986906       --> ..........................GCTCTCCGATCTGTCAAAACACCG

               51     -    101
UN15240        --> TTTGTAACTCCCACCGCCGTCGTCTCCTCCTCAATTGTCAACAAACCACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983065       <-- ..................................................
FD530105       <-- ..................................................
FD960935       <-- ..................................................
EV567451       --> TTTGTAACTCCCACCGCCGTCGTCTCCTCCTCAATTGTCAACAAACCACA
FD965108       --> TTTGTAACTCCCACCGCCGTCGTCTCCTCCTCAATTGTCAACAAACCACA
FD534083       --> TTTGTAACTCCCACCGCCGTCGTCTCCTCCTCAATTGTCAACAAACCACA
FD986906       --> TTTGTAACTCCCACCGCCGTCGTCTCCTCCTCAATTGTCAACAAACCACA

               101    -    151
UN15240        --> GTCTTTCAGATTCGCCTCTAAACCGAGGGCATCACTCGCCGTCTACAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983065       <-- ..................................................
FD530105       <-- ..................................................
FD960935       <-- ..................................................
EV567451       --> GTCTTTCAGATTCGCCTCTAAACCGAGGGCATCGCTCGCCGTCTGCAACA
FD965108       --> GTCTTTCAGATTCGCCTCTAAACCGAGGGCATCACTCGCTGTCTACAACA
FD534083       --> GTCTTTCAGATTCGCCTCTAAACCGAGGGCATCACTCGCCGTCTACAACA
FD986906       --> GTCTTTCAGGTTCGCCTCTAAACCGAGGGCATCACTCGCCGTCCACAACA

               151    -    201
UN15240        --> ACCACCACCAACCGATCTCCATCACTCGATCGAATCTTATACCCAAACTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983065       <-- ..................................................
FD530105       <-- ..................................................
FD960935       <-- ..................................................
EV567451       --> ACCACCACCAACCGATCTCCATCACTCGATCGAATCTTATACCCAAACTC
FD965108       --> ACCACCACCAACCGATCTCCATCACTCGATCGAATCTTATACCCAAACTC
FD534083       --> ACCACCACCAACCGATCTCCATCACTCGATCGAATCTTATACCCAAACTC
FD986906       --> ACCACCACCAACCGATCTCCATCACTCGATCGAATCTTATACCCAAACTC

               201    -    251
UN15240        --> AAACCATCATCTCCCGCCGCGAAATTCAGGTGCTCGGCGTCGTCGTCGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983065       <-- ..............................................CGGC
FD530105       <-- ...............................................GGC
FD960935       <-- ..................................................
EV567451       --> AAACCATCATCTCCCGCCGCGAAATTCAGGTGCTCGGCGTCGTCGTCGGC
FD965108       --> AAACCACCATCTCCCGCCGCGAAATTCAGGTGCTCGGCGTCGTCG---GC
FD534083       --> AAACCACCATCTCCCGCCGCGAAATTCAGGTGCTCGGCGTCGTCG---GC
FD986906       --> AAACCATCATCTCCCGCCGCGAAATTCAGGTGCTCGGCGTCGTCGTCGGC

               251    -    301
UN15240        --> GCTCACGCCTCAGCTCAGAGATACGCTGGAGAAGCTGGTGAACTCGGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983065       <-- GCTCACGCCGCAGCTTAGAGATACGCTGGAGAAGCTGGTGAACTCGGAGA  Raphanus raphanistrum subsp. landra
FD530105       <-- GCTCACGCCTCAACTCAGAGATACGCTGGAGAAGCTGGTGAACTCGGAGA  Raphanus raphanistrum subsp. maritimus
FD960935       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV567451       --> GCTCACGCCGCAGCTCAGAGATACGCTGGAGAAGCTGGTGAACTCGGAGA  Raphanus raphanistrum subsp. landra
FD965108       --> GCTCACGCCTCAACTCAGAGATACGCTGGAGAAGCTGGTGAACTCGGAGA  Raphanus raphanistrum subsp. maritimus
FD534083       --> GCTCACGCCTCAACTCAGAGATACGCTGGAGAAGCTGGTGAACTCGGAGA  Raphanus raphanistrum subsp. maritimus
FD986906       --> GCTCACGCCGCAGCTTAGAGATACGCTGGAGAAGCTGGTGAACTCGGAGA  Raphanus raphanistrum subsp. landra

               301    -    351
UN15240        --> AAGTCGTGTTATTCATGAAAGGCACGAGGGATTTCCCCATGTGCGGATTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983065       <-- AAGTCGTGTTATTCATGAAAGGCACGAGGGATTTCCCGATGTGCGGATTC
FD530105       <-- AAGTCGTGTTATTCATGAAAGGCACGAGGGATTTCCCCATTTGCGGATTC
FD960935       <-- ..................................................
EV567451       --> AAGTCGTGTTATTCATGAAAGGCACGAGGGATTTCCCCATGTGCGGATTC
FD965108       --> AAGTCGTGTTATTCATGAAAGGGACGAGGGATTTCCCCATGTGCGGATTC
FD534083       --> AAGTCGTGTTATTCATGAAAGGCACGAGGGATTTCCCCATTTGCGGATTC
FD986906       --> AAGTCGTGTTATTCATGAAAGGCACGAGGGATTTCCCGATGTGCGGATTC

               351    -    401
UN15240        --> TCGAACACGGTGGTGCAGATCCTCAAGAATCTGAACGTCCCCTTCGAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983065       <-- TCGAACACGGTGGTGCAGATCCTCAAGAATCTGAACGTCCCCTTCGAAGA  Raphanus raphanistrum subsp. landra
FD530105       <-- TCGAACACGGTGGTGCAGATCCTCAAGAATCTCAACGTCCCCTTGGAAGA  Raphanus raphanistrum subsp. maritimus
FD960935       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV567451       --> TCGAACACGGTGGTGCAGATCCTCAATAATCTGAACGTCCCCTTCGAAGA  Raphanus raphanistrum subsp. landra
FD965108       --> TCGAACACGGTGGTGCAGATCCTCAAGAATCTCAACGTCCCCTTCGAAGA  Raphanus raphanistrum subsp. maritimus
FD534083       --> TCGAACACGGTGGTGCAGATCCTCAAGAATCTCAACGTCCCCTTCGAAGA  Raphanus raphanistrum subsp. maritimus
FD986906       --> TCGAACACGGTGGTGCAGATCCTCAAGAATCTGAACGTCCCCTTCGAAGA  Raphanus raphanistrum subsp. landra

               401    -    451
UN15240        --> CGTGAACATTCTCGAGAACGAGATGCTGAGGCAAGGGCTGAAAGAGTACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983065       <-- CGTGAACATTCTCGAGAACGAGATGCTGAGGCAAGGGCTGAAAGAGTACT  Raphanus raphanistrum subsp. landra
FD530105       <-- CGTCAACATTCTCGAGAACGAGATGCTGAGGCAAGGGCTGAAAGAGTACT  Raphanus raphanistrum subsp. maritimus
FD960935       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV567451       --> CGTGAACATTCTCGAGAACGAGATGCTGAGGCAAGGGCTGAAAGAGTACT  Raphanus raphanistrum subsp. landra
FD965108       --> CGTCAACATTCTCGAGAACGAGATGCTGAGGCAAGGGCTGAAAGAGTACT  Raphanus raphanistrum subsp. maritimus
FD534083       --> CGTCAACATTCTCGAGAACGAGATGCTGAGGCAAGGGCTGAAAGAGTACT  Raphanus raphanistrum subsp. maritimus
FD986906       --> CGTGAACATTCTCGAGAACGAGATGCTGAGGCAAGGGCTGAAAGAGTACT  Raphanus raphanistrum subsp. landra

               451    -    501
UN15240        --> CTAATTGGCCCACGTTTCCTCAGCTTTACATCGACGGCGAGTTCTTCGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983065       <-- CGAACTAGCCCACGTTTCCTCAGCTTTACATCGACGGCGAGTTCTTCGGG  Raphanus raphanistrum subsp. landra
FD530105       <-- CTAATTGGCCCACGTTTCCTCAGCTTTACATCGACGGCGAGTTCTTCGGG  Raphanus raphanistrum subsp. maritimus
FD960935       <-- .........................................tttTTCGGG  Raphanus raphanistrum subsp. maritimus
EV567451       --> CGAACTGGCCCACGTTTCCTCAGCTTTACATCGACGGCGAGTTCTTCGGG  Raphanus raphanistrum subsp. landra
FD965108       --> CTAATTGGCCCACGTTTCCTCAGCTTTACATCGACGGCGAGTTCTTCGGG  Raphanus raphanistrum subsp. maritimus
FD534083       --> CTAATTGGCCCACGTTTCCTCAGCTTTACATCGACGGCGAGTTCTTCGGG  Raphanus raphanistrum subsp. maritimus
FD986906       --> CGAACTAGCCCACGTTTCCTCAGCTTTACATCGACGGCGAGTTCTTCGGG  Raphanus raphanistrum subsp. landra

               501    -    551
UN15240        --> GGATGTGACATCACTCTCGAGGCGTTTCAGAGTGGGGAGTTGCAGGAAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983065       <-- GGATGTGACATCACTCTCGAGGCGTTTCAGAGTGGGGAGTTGCAGGAAGT
FD530105       <-- GGATGTGACATCACTCTCGAGGCGTTTCAGAGTGGGGAGTTTCAGGAAGT
FD960935       <-- GGATGTGACATCACTCTCGAGGCGTTTCAGAGTGGGGAGTTGCAGGAATT
EV567451       --> GGATGTGACATCACTCTCGAGGCGTTTCAGAGTGGGGAGTTGCAGGAAGT
FD965108       --> GGATGTGACATCACTCTCGAGGCGTTTCAGAGTGGGGAGTTGCAGGAATT
FD534083       --> GGATGTGACATCACTCTCGAGGCGTTTCAGAGTGGGGAGTT.........
FD986906       --> GGATGTGACATCACTCTCGAGGCGTTTCAGAGTGGGGAGTTGCAGGAAGT

               551    -    601
UN15240        --> TGTTGAAAGAGCTATTTGTTCTTGATGCTTTGATATGCTTGTCTTTGGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983065       <-- TGTTGAAAGAGCTATTTGTTCTTGATGCTTTGATATGCTTGTCTTTGGGG
FD530105       <-- TGTTGAAAGAGCTATTTGTTCTTGATGCTTTGATATGCTTGTCTTTGGGG
FD960935       <-- TGTTGAAAGAGCTATTTGTTCTTGATGCTTTGATATGCTTGTCTTTGGGG
EV567451       --> TGTTGAAAGAGCTATTTGTTCTTGATGCTTTGATATGCTTGTCTTTGGGG
FD965108       --> TGTTGAAAGAGCTATTTGTTCTTGATGCTTTGATATGCTTGTCTTTGGGG
FD534083       --> ..................................................
FD986906       --> TGTTGAAAGAGCTATTTGTTCTTGATGCTTTGATATGCTTGTCTTTGGGG

               601    -    651
UN15240        --> -TTTTGTAACAATGCTATTTGATCGTATTGTGTGATGGATATAGTTATAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983065       <-- -TTTTGTAACAATGCTATTTGATCGTATTGTGTGATGGATATAGTTATAG
FD530105       <-- -TTTTGTAACAATGCTATTTGATCGTATTGTGTGATGGATATAGTTATAG
FD960935       <-- -TTTTGTAACAATGCTATTTGATCGTATTGTGTGATGGATATAGTTATAG
EV567451       --> GTTTTGTAACAATGCTATTTGATCGTATTGTGTGATGGATATAGTTATAG
FD965108       --> -TTTTGTAACAATGCTATTTGATCGTATTGTGTGATGGATATAGTTATAG
FD534083       --> ..................................................
FD986906       --> -TTTTGTAACAATGCTATTTGATCGTATTGTGTGATGGATATAGTTATAG

               651    -    701
UN15240        --> AAATAGTACTACTATGTGCTTGAATCCATACATTATAAAACTCTTCTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983065       <-- AAATAGTACTACTA....................................
FD530105       <-- AAATAGTACTACTATGTGCTTGAATCCATACATTATAAAACTCTTCTTGA
FD960935       <-- AAATAGTACTACTATGTGCTTGAATCCATACATTATAAAACTCTTCTTGA
EV567451       --> AAATAGTACTACTATGTGCTTGAATCCATACATTATAAAACTCTTCTTGA
FD965108       --> AAATAGTACTACTATGTGCTTGAATCCATACATTATAAAACTCTTCTTGA
FD534083       --> ..................................................
FD986906       --> AAATAGTACTACTATGTGCTTGAATCCATACATTATAGAAC.........

               701    -    751
UN15240        --> TGTCTCAGAGTTTATGGTTGGTGGTAACACTACAAGAGACATATTGTATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983065       <-- ..................................................
FD530105       <-- TGTCcc............................................
FD960935       <-- TGTCTCAGAGTTTATGGTTGGTGGTAACACTACAAGAGACATATTGTATA
EV567451       --> TGTCTCAGAGTTTATGGTTGGTGGTAACACTACAAGAGACATATTGTATA
FD965108       --> TGTCTCAGAGTTTATGGTTGGTGGTAACACTACAAGAGACATATTGTATA
FD534083       --> ..................................................
FD986906       --> ..................................................

               751    -    801
UN15240        --> ATGGAACTAGCTATGTAACAATAGTACCACTATGCACCTGAAACTCTATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983065       <-- ..................................................
FD530105       <-- ..................................................
FD960935       <-- ATGGAACTAGCTATGTAACAATAGTACCACTATGCACCTGAAACTCTATC
EV567451       --> ATGGAACTAGCTATGTAcat..............................
FD965108       --> ATGGAACTAGCTATGTAACAATAGTACCACTATGCACCTGAAACTCTATC
FD534083       --> ..................................................
FD986906       --> ..................................................

               801    -    851
UN15240        --> CATTACTAAAGTCTTCTTGATGTCTAAGAGTTTATGGTTGGTTAAGTAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983065       <-- ..................................................
FD530105       <-- ..................................................
FD960935       <-- CATTACTAAAGTCTTCTTGATGTCTAAGAGTTTATGGTTGGTTAAGTAAC
EV567451       --> ..................................................
FD965108       --> CATTA.............................................
FD534083       --> ..................................................
FD986906       --> ..................................................

               851    -    901
UN15240        --> GC
                   ~~
FD983065       <-- ..
FD530105       <-- ..
FD960935       <-- GC
EV567451       --> ..
FD965108       --> ..
FD534083       --> ..
FD986906       --> ..