Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN15275

               -3     -     47
UN15275        --> ....GCAAAACAAGCGTAACAATCACGTTCATAAAATATCATAACACGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714998       <-- ....GCAAAACAAGCGTAACAATCACATTCATAAAACATCATAACACGGA  Raphanus sativus var. oleiformis
EX773656       <-- ....GCAAAACAAGCGTTACAATCACGTTCATAAA-TATCATAACACCGA  Raphanus raphanistrum subsp. landra
FD957064       <-- .......AAACAAGCGTAACAATCACATTCATAAAACATCATAACACGGA  Raphanus sativus cv Rat-Tail Radish #3870
FD937872       <-- tttttttttACAAGCGTAACAATCACATTCATAAAACATCATAACACGGA  Raphanus sativus var. oleiformis
EW734648       <-- ..............CGTTACAATCACGTTCATAAA-TATCATAACACCGA  Raphanus sativus cv Rat-Tail Radish #3870
EX777480       --> ....GCAAAACAAGCGTTACAATCACGTTCATAAA-TATCATAACACCGA  Raphanus raphanistrum subsp. landra
FD934400       --> .........ACAAGCGTAACAATCACATTCATAAAACATCATAACACGGA  Raphanus sativus var. oleiformis
EW738946       --> ..............CGTTACAATCACGTTCATAAA-TATCATAACACCGA  Raphanus sativus cv Rat-Tail Radish #3870
EW719775       --> ..................................................  Raphanus sativus var. oleiformis

               47     -     97
UN15275        --> GAGTTTAGTTCGTTATTGTTACATAACGTAATAGTGTGACTTCGAATTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714998       <-- GAGTTTAGTTCGTTATTGTTACATAACGTAATAGTGTGACTTCAAATTTT  Raphanus sativus var. oleiformis
EX773656       <-- CAGTTTAGTTCGTTATTGTAACATAACGTAATAGTGTGACTTCGAATTTT  Raphanus raphanistrum subsp. landra
FD957064       <-- GAGTTTAGTTCGTTATTGTTACATAACGTAATAGTGTGACTTCAAATTTT  Raphanus sativus cv Rat-Tail Radish #3870
FD937872       <-- GAGTTTAGTTCGTTATTGTTACATAACGTAATAGTGTGACTTCAAATTTT  Raphanus sativus var. oleiformis
EW734648       <-- GAGTTTAGTTCGTTATTGTAACATAACGTAATAGTGTGACTTCGAATTTT  Raphanus sativus cv Rat-Tail Radish #3870
EX777480       --> CAGTTTAGTTCGTTATTGTAACATAACGTAATAGTGTGACTTCGAATTTT  Raphanus raphanistrum subsp. landra
FD934400       --> GAGTTTAGTTCGTTATTGTTACATAACGTAATAGTGTGACTTCAAATTTT  Raphanus sativus var. oleiformis
EW738946       --> GAGTTTAGTTCGTTATTGTAACATAACGTAATAGTGTGACTTCGAATTTT  Raphanus sativus cv Rat-Tail Radish #3870
EW719775       --> ..................................................  Raphanus sativus var. oleiformis

               97     -    147
UN15275        --> ATTACAACATTATCAAACACACAAATAACATCAAGGGAA-GAGTTTGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714998       <-- ATTACAACATTATCAAACACACAAATAACATCAAGGGAA-GAGTTTGCTT
EX773656       <-- ATTACAACATTATCAAACACACAAATAACATCAAGGAAA-GAGTTTGCTT
FD957064       <-- ATTACAACATTATCAAACACACAAATAACATCAAGGGAA-GAGTTTGCTT
FD937872       <-- ATTACAACATTATCAAACACACAAATAACATCAAGGGAA-GAGTTTGCTT
EW734648       <-- ATTACAACATTATCAAACACACAAATAACATCAAAGGAAAGAGTTTGCTT
EX777480       --> ATTACAACATTATCAAACACACAAATAACATCAAGGAAA-GAGTTTGCTT
FD934400       --> ATTACAACATTATCAAACACACAAATAACATCAAGGGAA-GAGTTTGCTT
EW738946       --> ATTACAACATTATCAAACACACAAATAACATCAAAGGAAAGAGTTTGCTT
EW719775       --> .................................................T

               147    -    197
UN15275        --> CCTACGAATGCTGAGTCTTGTCCAAATCCTCGAGACTTGTTGGACGGTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714998       <-- CCTACGAATGCTGAGTCTTGTCCAAATCCTCGAGACTTGTTGGACGGTAC  Raphanus sativus var. oleiformis
EX773656       <-- CCTACGAATGCTGAGTCTTGTCCAAATCCTCGAGACTTGTTGGACGGAAC  Raphanus raphanistrum subsp. landra
FD957064       <-- CCTACGAATGCTGAGTCTTGTCCAAATCCTCGAGACTTGTTGGACGGTAC  Raphanus sativus cv Rat-Tail Radish #3870
FD937872       <-- CCTACGAATGCTGAGTCTTGTCCAAATCCTCGAGACTTGTTGGACGGTAC  Raphanus sativus var. oleiformis
EW734648       <-- CCTACGAATGCTGAGTCTTGTCCAAATCCTCGAGACTTGTTGGACGGAAC  Raphanus sativus cv Rat-Tail Radish #3870
EX777480       --> CCTACGAATGCTGAGTCTTGTCCAAATCCTCGAGACTTGTTGGACGGAAC  Raphanus raphanistrum subsp. landra
FD934400       --> CCTACGAATGCTGAGTCTTGTCCAAATCCTCGAGACTTGTTGGACGGTAC  Raphanus sativus var. oleiformis
EW738946       --> CCTACGAATGCTGAGTCTTGTCCAAATCCTCGAGACTTGTTGGACGGAAC  Raphanus sativus cv Rat-Tail Radish #3870
EW719775       --> CCTACGAATGCTGAGTCTTGTCCAAATCCTCGAGACTTGTTGGACGGTAC  Raphanus sativus var. oleiformis

               197    -    247
UN15275        --> CAAGCTTTCTCCTCCATTACTGAGTCATCTTGACTGCTGCGATTCTCCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714998       <-- CAAGCTTTCTCCTCCATTACTGAGTCATCTTGACTGCTGCGATTCTCCTC
EX773656       <-- CAAGCTTTCTCCTCCATTACTGAGTCATCTTGACTGCTGCGATTCTCCTC
FD957064       <-- CAAGCTTCCTCCTCCATTACTGAGTCATCTTGACTGCTGCGATTCTCCTC
FD937872       <-- CAAGCTTTCTCCTCCATTACTGAGTCATCTTGACTGCTGCGATTCTCCTC
EW734648       <-- CAAGCTTTCTCCTCCATTACTGAGTCATCTTGACTGCTGCGATTCTCCTC
EX777480       --> CAAGCTTTCTCCTCCATTACTGAGTCATCTTGACTGCTGCGATTCTCCTC
FD934400       --> CAAGCTTTCTCCTCCATTACTGAGTCATCTTGACTGCTGCGATTCTCCTC
EW738946       --> CAAGCTTTCTCCTCCATTACTGAGTCATCTTGACTGCTGCGATTCTCCTC
EW719775       --> CAAGCTTTCTCCTCCATTACTGAGTCATCTTGACTGCTGCGATTCTCCTC

               247    -    297
UN15275        --> GGTTATGTCGGTGGTGGAAGATGAGGTCGAAGGTCCAAAGACACCTGTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714998       <-- GGTTATGTCGGTGGTGGAAGATGAGGTCGAAGGTCCAAAGACACCTGTTC  Raphanus sativus var. oleiformis
EX773656       <-- GGTTATGTCGGTGGTGGAAGATGAGGTCGAAGGTCCAAAGACACCGGTTC  Raphanus raphanistrum subsp. landra
FD957064       <-- GGTTATGTCGGTGGTGGAAGATGAGGTCGAAGGTCCAAAGACACCTGTTC  Raphanus sativus cv Rat-Tail Radish #3870
FD937872       <-- GGTTATGTCGGTGGTGGAAGATGAGGTCGAAGGTCCAAAGACACCTGTTC  Raphanus sativus var. oleiformis
EW734648       <-- GGTTATGTCGGTGGTGGAAGATGAGGTCGAAGGTCCAAAGACACCGGTTC  Raphanus sativus cv Rat-Tail Radish #3870
EX777480       --> GGTTATGTCGGTGGTGGAAGATGAGGTCGAAGGTCCAAAGACACCGGTTC  Raphanus raphanistrum subsp. landra
FD934400       --> GGTTATGTCGGTGGTGGAAGATGAGGTCGAAGGTCCAAAGACACCTGTTC  Raphanus sativus var. oleiformis
EW738946       --> GGTTATGTCGGTGGTGGAAGATGAGGTCGAAGGTCCAAAGACACCGGTTC  Raphanus sativus cv Rat-Tail Radish #3870
EW719775       --> GGTTATGTCGGTGGTGGAAGATGAGGTCGAAGGTCCAAAGACACCTGTTC  Raphanus sativus var. oleiformis

               297    -    347
UN15275        --> GAGGATGAGGAGACCAATATTTGTCAGAGTCATCAGGCTTTATCAATTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714998       <-- GAGGATGAGGAGACCAATATTTGTCAGAGTCATCAGGCTTTATCAATTCA
EX773656       <-- GAGGATGAGGAGACCAATATTTGTCAGAGTCATCAGGCTTTATCAATTCA
FD957064       <-- GAGGATGAGGAGACCAATATTTGTCAGAGTCATCAGGCTTTATCAATTCA
FD937872       <-- GAGGATGAGGAGACCAATATTTGTCAGAGTCATCAGGCTTTATCAATTCA
EW734648       <-- GAGGATGAGGAGACCAATATTTGTCAGAGTCATCAGGCTTTATCAATTCA
EX777480       --> GAGGATGAGGAGACCAATATTTGTCAGAGTCATCAGGCTTTATCAATTCA
FD934400       --> GAGGATGAGGAGACCAATATTTGTCAAAGTCATCAGGCTTTATCAATTCA
EW738946       --> GAGGATGAGGAGACCAATATTTGTCAGAGTCATCAGGCTTTATCAATTCA
EW719775       --> GAGGATGAGGAGACCAATATTTGTCAGAATCATCAGGCTTTATCAATTCA

               347    -    397
UN15275        --> TCAGGCACTTTACTCGATTGCAATTCTTCTTCTACGTTCTTATCATACGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714998       <-- TCAGGCACTTTACTCGATTGCAATTCTTCTTCTACGTTCTTATCATACGC
EX773656       <-- TCAGGCACTTTACTCGATTGCAATTCTTCTTCTACGTTTTTATCATACGC
FD957064       <-- TCAGGCACTTTACTCGATTGCAATTCTTCTTCTACGTTCTTATCATACGC
FD937872       <-- TCAGGCACTTTACTCGATTGCAATTCTTCTTCTACGTTCTTATCATACGC
EW734648       <-- TCAGGCACTTTACTCGATTGCAATTCTTCTTCTACGTTCTTATCATACGC
EX777480       --> TCAGGCACTTTACTCGATTGCAATTCTTCTTCTACGTTTTTATCATACGC
FD934400       --> TCAGGCACTTTACTCGATTGCAATTCTTCTTCTACGTTCTTATCATACGC
EW738946       --> TCAGGCACTTTACTCGATTGCAATTCTTCTTCTACGTTCTTATCATACGC
EW719775       --> TCAGGCACTTTACTCGATTGCAATTCTTCTTCTACGTTCTTATCATACGC

               397    -    447
UN15275        --> CGATGTGTGACCATTCCTAGAGGCAGAGAGATCAGATGCGACGGCGCGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714998       <-- CGATGCGTGACCATTCCTAGAGGCAGAGAGATCAGATGCGACGGCGCGTG
EX773656       <-- CGACGTGTGACCATTCCTAGAGGCAGAGAGATCAGATGCGACGGCGCGTG
FD957064       <-- CGATGTGTGACCATTCCTAGAGGCAGAGAGATCAGATGCGACGGCGCGTG
FD937872       <-- CGATGTGTGACCATTCCTAGAGGCAGAGAGATCAGATGCGACGGCGCGTG
EW734648       <-- CGATGTGTGACCATTCCTAGAGGCGGAGAGATCAGATGCGACGGCGCGTG
EX777480       --> CGACGTGTGACCATTCCTAGAGGCAGAGAGATCAGATGCGACGGCGCGTG
FD934400       --> CGATGTGTGACCATTCCTAGAGGCAGAGAGATCAGATGCGACGGCGCGTG
EW738946       --> CGATGTGTGACCATTCCTAGAGGCGGAGAGATCAGATGCGACGGCGCGTG
EW719775       --> CGATGCGTGACCATTCCTAGAGGCAGAAAGATCAGATGCGACGGCGCGTG

               447    -    497
UN15275        --> GGAAAGCCCATGAACGAACGCCGTTGACTAGGTGCTTCCTGATCACCTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714998       <-- GGAAAGCCCATGAACGAACGCCGTTGACTAGGTGCTTCCTGATCACCTGA
EX773656       <-- GGAAAGCCCATGAACGAACGCCGTTGACTAGGTGCTTCCTGATCACCTGA
FD957064       <-- GGAAAGCCCACGAACGAACGCCGTTGACTAGGTGCTTCCTGATCACCTGA
FD937872       <-- GGAAAGCCCATGAACGAACGCCGTTGACTAGGTGCTTCCTGATCACCTGA
EW734648       <-- GGAAATCCCATGAACGAACGCCGTTGACTAGGTGCTTCCTGATCACCTGA
EX777480       --> GGAAAGCCCATGAACGAACGCCGTTGACTAGGTGCTTCCTGATCACCTGA
FD934400       --> GGAAAGCCCATGAACGAACGCCGTTGACTAGGTGCTTCCTGATCACCTGA
EW738946       --> GGAAATCCCATGAACGAACGCCGTTGACTAGGTGCTTCCTGATCACCTGA
EW719775       --> GGAAAGCCCATGAACGAACGCCGTTGACTAGGTGCTTCCTGATCACCTGA

               497    -    547
UN15275        --> AGGCTCTTGGATTTGGCTGCCATTCAACTGGTACCCCAAGATTGAGAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714998       <-- AGGCTCTTGGATTTGGCTGCCATTCAACTGGTACCCCAAGATTGcc....
EX773656       <-- AGGCTCTTGGGTTTGGCTG...............................
FD957064       <-- AGGCTCTTGGATTTGGCTGC..............................
FD937872       <-- AGGCTCTTGGATTTGGCTGCCATTCAACTGGTACCCCAAGATTGAGAGAG
EW734648       <-- AGGCTCTTGGATTTGGCTGCCATTCAACTGGTACCCCAAGATTGAGAGcc
EX777480       --> AGGCTCTTGGGTTTGGCTGCCATTCAACTGGTACCCCAAGATTGAGAGcc
FD934400       --> AGGCTCTTGGATTTGGCTGCCATTCAACTGGTACCCCAAGATTGAGAGAG
EW738946       --> AGGCTCTTGGATTTGGCTGCCATTCAACTGGTACCCCAAGATTGAGAGcc
EW719775       --> AGGCTCTTGGATTTGGCTGCCATTCAACTGGTACCCCAAGATTGcc....

               547    -    597
UN15275        --> AGAGAGTTGTGTTTGGGTGAGTATTAATGGAGAATACTTGCAACTTGTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714998       <-- ..................................................
EX773656       <-- ..................................................
FD957064       <-- ..................................................
FD937872       <-- AGAGAGTTGTGTTTGGGTGAGTATTAATGGAGAATACTTGCAACTTGTCT
EW734648       <-- ..................................................
EX777480       --> ..................................................
FD934400       --> AGAGAGTTGTGTTTGGGTGAGTATTAATGGAGAATACTTGCAACTTGTCT
EW738946       --> ..................................................
EW719775       --> ..................................................

               597    -    647
UN15275        --> GTTTATATAAATATAACATACAAGATGGAAATTTCAGTGTGAAAAAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714998       <-- ..................................................
EX773656       <-- ..................................................
FD957064       <-- ..................................................
FD937872       <-- GTTTATATAAATATAACATACAAGATGGAAATTTCAGTGTGAAAAAAAAA
EW734648       <-- ..................................................
EX777480       --> ..................................................
FD934400       --> GTTTATATAAATATAACATACAAGATGGAAATTTCAGTGTGAAAAAAAAA
EW738946       --> ..................................................
EW719775       --> ..................................................

               647    -    697
UN15275        --> TAAAATACAAGTGTGGAATGAGACAAAAGAGCACATCATACGGTTCCCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714998       <-- ..................................................
EX773656       <-- ..................................................
FD957064       <-- ..................................................
FD937872       <-- TAAAATACAAGTGTGGAATGAGACAAAAGAGCACATCATACGGTTCCCAT
EW734648       <-- ..................................................
EX777480       --> ..................................................
FD934400       --> TAAAATACAAGTGTGGAATGAGACAAAAGAGCACATCA............
EW738946       --> ..................................................
EW719775       --> ..................................................

               697    -    747
UN15275        --> GTTCC
                   ~~~~~
EW714998       <-- .....
EX773656       <-- .....
FD957064       <-- .....
FD937872       <-- GTTCC
EW734648       <-- .....
EX777480       --> .....
FD934400       --> .....
EW738946       --> .....
EW719775       --> .....