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Alignment for radish unigene UN15594

               1      -     51
UN15594        --> GCTCCAAGTGGGTCTTATTGTCATGAGATAACTAAACGAGCAAAAATAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX771555       <-- GCTCCAAGTGGGTCTTATTGTCATGAGATAACTAAACGAGCAAAAATAAT
FY437302       <-- ..................................................
FY446835       <-- ..................................................
FY439586       <-- ..................................................
EV548684       <-- ..................................................
EX747240       <-- ..................................................
EX902775       <-- ..................................................
FY446830       <-- ..................................................
FD941395       <-- ..................................................
FD561351       <-- ..................................................
EV544315       --> ..................................................
EX906959       --> ..................................................
EX751483       --> ..................................................

               51     -    101
UN15594        --> GAAGACGTTCACTCTCACAGAGTGGCGATGTAAAAGAAAGATATGAGCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX771555       <-- GAAGACGTTCACTCTCACAGAGTGGCGATGTAAAAGAAAGATATGAGCAT
FY437302       <-- ..................................................
FY446835       <-- ..................................................
FY439586       <-- ..................................................
EV548684       <-- ..................................................
EX747240       <-- ..................................................
EX902775       <-- ..................................................
FY446830       <-- ..................................................
FD941395       <-- ..................................................
FD561351       <-- ..................................................
EV544315       --> ..................................................
EX906959       --> ..................................................
EX751483       --> ..................................................

               101    -    151
UN15594        --> TTAGTCAGGAAAGGAGCATTGTTACGACGAACCCTAATTTGCACTCGACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX771555       <-- TTAGTCAGGAAAGGAGCATTGTTACGACGAACCCTAATTTGCACTCGACC
FY437302       <-- ..........AAGGAGCATTGTTACGACGAACCCTAATTTGCACTCGACC
FY446835       <-- ..................................................
FY439586       <-- ..................................................
EV548684       <-- ..................................................
EX747240       <-- ..................................................
EX902775       <-- ..................................................
FY446830       <-- ..................................................
FD941395       <-- ..................................................
FD561351       <-- ..................................................
EV544315       --> .....CAGGAAAGGAGCATTGTTACGACGAACCCTAATTTGCACTCGACC
EX906959       --> ..cgttAGGAAAGGAGCATTGTTGCGACGAACCCTAATTTGCACTCGACC
EX751483       --> ..........................................ACTCGACC

               151    -    201
UN15594        --> ACAGTTTTGTATAAAATACATAATGCTTCTAA-GTTCAAAAGAGATATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX771555       <-- ACAGTTTTGTATAAA-TACATAATGCTTCTAA-GTTCAAAAGAGATATTT
FY437302       <-- ACAGTTTTGTATAAAATACATAATGCTTCTAA-GTTCAAAAGAAATATTT
FY446835       <-- ..AGTTTTGTATAAAATACATAATGCTTCTAA-GTCCAAAAGAAATATTT
FY439586       <-- ................TACATAATGCTTCTAA-GTTCAAAAGAAATATTT
EV548684       <-- ..................................................
EX747240       <-- ..................................................
EX902775       <-- ..................................................
FY446830       <-- ..................................................
FD941395       <-- ..................................................
FD561351       <-- ..................................................
EV544315       --> ACAGTTTTGTATAAA-TACATAATGCTTCTAA-GTTCAAAAGATATATTT
EX906959       --> ACAGTTTTGTATAAA-TACATAATGCTTCTAA-GTTCACAAGAGATATTT
EX751483       --> ACAGTTTTGTATAAA-TACATAATGCTTCTAAAGTTCAAAAACGATATTT

               201    -    251
UN15594        --> GTACAAACATGATCACACAAACCCATCCTTCCTTTTTGACGT--CTCACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX771555       <-- GTACAAACATGAT.....................................
FY437302       <-- GTACAAACATGATCACACAAACCCATCCTTCCTTTTTAACGT--CTCACT
FY446835       <-- GTACAAACATGATCACACAAACCCATCCTTCCTTTTTAACGT--CTCACT
FY439586       <-- GTACAAACATGATCACACAAACCCATCCTTCCTTTTTAACGT--CTCACT
EV548684       <-- .................................ttgacgtGT--CTCACT
EX747240       <-- ..................................................
EX902775       <-- ..................................................
FY446830       <-- ..................................................
FD941395       <-- ..................................................
FD561351       <-- ..................................................
EV544315       --> GTACAAACATGATCACACAAACCCATCCTTCCTTTTTGACGTGTCTCACT
EX906959       --> GTACAAACATGATCACACAAACCAATTCTTCCTTTTTGACGT--CTCACT
EX751483       --> GTACAAACATGATCACACAAACCAATCCTTCCTTTTTGACGT--CTCACT

               251    -    301
UN15594        --> TGGGTGTGAAAGCAGCGAAGATAGTGGCGTGGCCAGGATCAGCAAGATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX771555       <-- ..................................................
FY437302       <-- TGGGTGTGAAAGCAGCGAAGATAGTGGCGTGGCCAGGATCAGCAAGATGT
FY446835       <-- TGGGTGTGAAAGCAGCGAAGATAGTGGCGTGGCCAGGATCAGCAAGATGT
FY439586       <-- TGGGTGTGAAAGCAGCGAAGATAGTGGCGTGGCCAGGATCAGCAAGATGT
EV548684       <-- TGGGTGTGAAAGCAGCGAAGATAGTGGCGTGGCCAGGATCAGCAAGATGT
EX747240       <-- ..................................................
EX902775       <-- ..................................................
FY446830       <-- ..................................................
FD941395       <-- ..................................................
FD561351       <-- ..................................................
EV544315       --> TGGGTGTGAAAGCAGCGAAAATAGTGGCGTGGCCAGGATCAGCAAGATGT
EX906959       --> TGGGTGTGAAAGCAGCGAAGATCGTGGCGTGGCCAGGATCAGCAAGATGT
EX751483       --> TGGGTGTGAAAGCAGCGAAAATAGTGGCGTGGCCTGGATCAGCAAGATGT

               301    -    351
UN15594        --> GCAAAAAGGTTATCAATAGGACCAGTCCCAGTGTATATATGTTGGAACCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX771555       <-- ..................................................  Raphanus raphanistrum subsp. landra
FY437302       <-- GCAAAAAGGTTATCAATAGGACCAGTCCCAGTGTATATGTGTTGGAACCA  Raphanus sativus cv GSK3-1
FY446835       <-- GCAAAAAGGTTATCAATAGGACCAGTCCCAGTGTATATGTGTTGGAACCA  Raphanus sativus cv GSK3-1
FY439586       <-- GCAAAAAGGTTATCAATAGGACCAGTCCCAGTGTATATGTGTTGGAACCA  Raphanus sativus cv GSK3-1
EV548684       <-- GCAAAAAGGTTATCAATAGGACCAGTCCCAGTGTAGATATGTTGGAACCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX747240       <-- ........GTTATCAATAG-ACCAGTCCCAGTGTATATATG--TGAACCA  Raphanus raphanistrum subsp. maritimus
EX902775       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FY446830       <-- ..................................................  Raphanus sativus cv GSK3-1
FD941395       <-- ..................................................  Raphanus sativus var. oleiformis
FD561351       <-- ..................................................  Raphanus sativus var. oleiformis
EV544315       --> GCAAAAAGGTTATCAATAGGACCAGTCCCAGTGTAGATATGTTGGAACCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX906959       --> GCAAAAAGGTTATCAATAGGACCAGTCCCAGTGTAGATATGTTGGAACCA  Raphanus sativus cv Rat-Tail Radish #3870
EX751483       --> GCAAAAAGGTTATCAATAGGACCAGTCCCAGTGTATATATGTTGGAACCA  Raphanus raphanistrum subsp. maritimus

               351    -    401
UN15594        --> AGCACCCATCACTGCCAACATAGCCAACCTTCCGTTCTTTATCTCCTTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX771555       <-- ..................................................
FY437302       <-- AGCACCCATCACTGCCAACATAGCCAACCTTCCGTTCTTTATCTCCTTAG
FY446835       <-- AGCACCCATCACTGCCAACATAGCCAACCTTCCGTTCTTTATCTCCTTAG
FY439586       <-- AGCACCCATCACTGCCAACATAGCCAACCTTCCGTTCTTTATCTCCTTAG
EV548684       <-- GGCACCCATCACTGCCAACATAGCCAAC-TTCCATTCTTTATCTCCTTAG
EX747240       <-- AGCACCCATCACTGCCA-CATAGCCAAC-TTCCGTTCTTTATCTC-TTGG
EX902775       <-- .................................................G
FY446830       <-- ..................................................
FD941395       <-- ..................................................
FD561351       <-- ..................................................
EV544315       --> GGCACCCATCACTGCCAACATAGCCAACCTTCCATTCTTTATCTCCTTAG
EX906959       --> AGCACCCATCACTGCCAACATAGTCAACCTTCCGTTCTTTATCTCCTTAG
EX751483       --> AGCACCCATCACTGCCAACATAGCCAACCTTCCGTTCTTTATCTCCTTGG

               401    -    451
UN15594        --> TCCTCAGCTCCTTGATCTTAGCCGGGCTACCGGATCCCCAACCCAACGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX771555       <-- ..................................................
FY437302       <-- TCCTCAGCTCCTTGATCTTAGCCGGGCTACCGGATCCCCAACCCAACGGG
FY446835       <-- TCCTCAGCTCCTTGATCTTAGCCGGGCTACCGGATCCCCAACCCAACGGG
FY439586       <-- TCCTCAGCTCCTTGATCTTAGCCGGGCTACCGGATCCCCAACCCAACGGG
EV548684       <-- TCCTCAGCTCCTTGATCTTTGCCGGGCTACCGGATCCCCAACCCAACGGG
EX747240       <-- TCCTCAGCTC-TTGATCTTAGCCGGGCTACCGGATCCCCAACCCAACGGG
EX902775       <-- TCCTCAGCTCCTTGATCTTAGCCGGGCTACCGGATCCCCAACCCAACGGG
FY446830       <-- ..................................................
FD941395       <-- ..................................................
FD561351       <-- ..................................................
EV544315       --> TCCTCAGCTCCTTGATCTTTGCCGGGCTACCGGATCCCCAACCCAACGGG
EX906959       --> TCCTCAGCTCCTTGATCTTAGCCGGGCTACCGGATCCCCAACCCAACGGG
EX751483       --> TCCTCAGCTCCTTGATCTTAGCCGGGCTACCGGATCCCCAACCCAACGGG

               451    -    501
UN15594        --> TCGAACCATAACCCACCCGGGTATCCAACGTCTGTCCCCGTCAGTTTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX771555       <-- ..................................................  Raphanus raphanistrum subsp. landra
FY437302       <-- TCGAACCATAACCCACCCGGGTATCCAACGTCTGTCCCCGTCAGTTTGTT  Raphanus sativus cv GSK3-1
FY446835       <-- TCGAACCATAACCCACCCGGGTATCCAACGTCTGTCCCCGTCAGTTTGTT  Raphanus sativus cv GSK3-1
FY439586       <-- TCGAACCATAACCCACCCGGGTATCCAACGTCTGTCCCCGTCAGTTTGTT  Raphanus sativus cv GSK3-1
EV548684       <-- TCGAACCATAAACCACCCGGGTATCCAACGTCTGTCCCCGTCAGTTTGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX747240       <-- TCGAACCATAAACCACCCGGGTATCCAACGTCTGTCCCCGTCAGTTTGTT  Raphanus raphanistrum subsp. maritimus
EX902775       <-- TCGAACCATAACCCACCCGGGTATCCAACGTCTGTCCCCGTCAGTTTGTT  Raphanus sativus cv Rat-Tail Radish #3870
FY446830       <-- ....ACCATAACCCACCCGGGTATCCAACGTCTGTCCCCGTCAGTTTGTT  Raphanus sativus cv GSK3-1
FD941395       <-- ...............CCCGGGTACCCAACGTCTGTCCCCGTCAGTTTGTT  Raphanus sativus var. oleiformis
FD561351       <-- ..................................................  Raphanus sativus var. oleiformis
EV544315       --> TCGAACCATAAACCACCCGGGTATCCAACGTCTGTCCCCGTCAGTTTGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX906959       --> TCGAACCATAACCCACCCGGGTATCCAACGTCTGTCCCCGTCAGTTTGTT  Raphanus sativus cv Rat-Tail Radish #3870
EX751483       --> TCGAACCATAAACCACCCGGGTATCCAACGTCTGTCCCCGTCAGTTTGTT  Raphanus raphanistrum subsp. maritimus

               501    -    551
UN15594        --> GTTTGGGAAGATTGGGTCAGTGTTGACGCTACCTGGCTTAATGATGTCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX771555       <-- ..................................................  Raphanus raphanistrum subsp. landra
FY437302       <-- GTTTGGGAAGATTGGGTCAGTGTTGACGCTACCTGGCTTAATGATGTCAG  Raphanus sativus cv GSK3-1
FY446835       <-- GTTTGGGAAGATTGGGTCAGTGTTGACGCTACCTGGCTTAATGATGTCAG  Raphanus sativus cv GSK3-1
FY439586       <-- GTTTGGGAAGATTGGGTCAGTGTTGACGCTACCTGGCTTAATGATGTCAG  Raphanus sativus cv GSK3-1
EV548684       <-- GTTTGGGAAGATTGGGTCAGTGTTGACGCTCCCTGGCTTAATGATGTCAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX747240       <-- GTTTGGGAAGATTGGGTCAGTGTTGACGCTACCTGGCTTAATGATATCAG  Raphanus raphanistrum subsp. maritimus
EX902775       <-- GTTTGGGAAGATTGGGTCAGTGTTGACGCTACCTGGCTTAATGATATCAG  Raphanus sativus cv Rat-Tail Radish #3870
FY446830       <-- GTTTGGGAAGATTGGGTCAGTGTTGACGCTACCTGGCTTAATGATGTCAG  Raphanus sativus cv GSK3-1
FD941395       <-- GTTTGGGAAGATTGGGTCAGTGTTGACGCTGCCTGGCTTAATGATATCAG  Raphanus sativus var. oleiformis
FD561351       <-- ..................................................  Raphanus sativus var. oleiformis
EV544315       --> GTTTGGGAAGATTGGGTCAGTGTTGACGCTCCCTGGCTTAATGATGTCAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX906959       --> GTTTGGGAAGATTGGGTCAGTGTTGACGCTACCTGGCTTAATGATATCAG  Raphanus sativus cv Rat-Tail Radish #3870
EX751483       --> GTTTGGGAAGATTGGGTCAGTGTTGACGCTACCTGGCTTAATGATATCAG  Raphanus raphanistrum subsp. maritimus

               551    -    601
UN15594        --> CCCATCTACGTCCCTCGGCCCATCCTATTAAGATGAGCTCAACGACGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX771555       <-- ..................................................
FY437302       <-- CCCATCTACGTCCCTCGGCCCATCCTATTAAGATGAGCTCAACGACGAAG
FY446835       <-- CCCATCTACGTCCCTCGGCCCATCCTATTAAGATGAGCTCAACGACGAAG
FY439586       <-- CCCATCTACGTCCCTCGGCCCATCCTATTAAGATGAGCTCAACGACGAAG
EV548684       <-- CCCATCTACGTCCCTCGGCCCATCCTATTAAGATGAGCTCAACGACGAAG
EX747240       <-- CCCATCTACGTCCCTCGGCCCATCCTATTAAGATGAGCTCAACGACGAAG
EX902775       <-- CCCATCTACGTCCCTCGGCCCATCCTATTAAGATGAGCTCAACGACGAAG
FY446830       <-- CCCATCTACGTCCCTCGGCCCATCCTATTAAGATGAGCTCAACGACGAAG
FD941395       <-- CCCATCTACGTCCCTCGGCCCATCCTATTAAGATGAGCTCAACGACGAAG
FD561351       <-- ..................................................
EV544315       --> CCCATCTACGTCCCTCGGCCCATCCTATTAAGATGAGCTCAACGACGAAG
EX906959       --> CCCATCTACGTCCCTCGGCCCATCCTATTAAGATGAGCTCAACGACGAAG
EX751483       --> CCCATCTACGTCCCTCGGCCCATCCTATTAAGATGAGCTCAACGACGAAA

               601    -    651
UN15594        --> AGTGTGGTTTTGTCGGTGAAGTACTCTTGCTCTCCTGCCGTGTACCACGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX771555       <-- ..................................................  Raphanus raphanistrum subsp. landra
FY437302       <-- AGTGTGGTTTTGTCCGTGAAGTACTCTTGCTCTCCCGCCGTGTACCACGA  Raphanus sativus cv GSK3-1
FY446835       <-- AGTGTGGTTTTGTCCGTGAAGTACTCTTGCTCTCCCGCCGTGTACCACGA  Raphanus sativus cv GSK3-1
FY439586       <-- AGTGTGGTTTTGTCCGTGAAGTACTCTTGCTCTCCCGCCGTGTACCACGA  Raphanus sativus cv GSK3-1
EV548684       <-- AGTGTGGTTTTGTCCGTGAAGTACTCTTGCTCTCCTGCCGTGTACCACGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX747240       <-- AGTGTGGTTTTGTCGGTGAAGTACTCTTGCTCTCCTGCCGTGTACCACGA  Raphanus raphanistrum subsp. maritimus
EX902775       <-- AGTGTGGTTTTGTCGGTGAAGTACTCTTGCTCTCCTGCCGTGTACCACGA  Raphanus sativus cv Rat-Tail Radish #3870
FY446830       <-- AGTGTGGTTTTGTCCGTGAAGTACTCTTGCTCTCCCGCCGTGTACCACGA  Raphanus sativus cv GSK3-1
FD941395       <-- AGTGTGGTTTTGTCGGTGAAGTACTCTTGCTCTCCTGCCGTGTACCACGA  Raphanus sativus var. oleiformis
FD561351       <-- ........TTTGTCGGTGAAGTACTCTTGCTCTCCTGCCGTGTACCACGA  Raphanus sativus var. oleiformis
EV544315       --> AGTGTGGTTTTGTCCGTGAAGTACTCTTGCTCTCCTGCCGTGTACCACGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX906959       --> AGTGTGGTTTTGTCGGTGAAGTACTCTTGCTCTCCTGCCGTGTACCACGA  Raphanus sativus cv Rat-Tail Radish #3870
EX751483       --> AGTGTGGTTTTGTCGGTGAAGTACTCTTGCTCTCCTGCCGTGTACCACGA  Raphanus raphanistrum subsp. maritimus

               651    -    701
UN15594        --> CGGCGTGTTGAGGATTCCTATCTTGGTTAGAAACTCCGGGATAAAAATCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX771555       <-- ..................................................
FY437302       <-- CGGCGTGTTGAGGATTCCTATCTTGGTTAGAAACTCCGGGATAAAAATCC
FY446835       <-- CGGCGTGTTGAGGATTCCTATCTTGGTTAGAAACTCCGGGATAAAAATCC
FY439586       <-- CGGCGTGTTGAGGATTCCTATCTTGGTTAGAAACTCCGGGATAAAAATCC
EV548684       <-- CGGCGTGTTGAGGACTCCTATCTTGGTTAGAAACTCCGGGATAAAAATCC
EX747240       <-- CGGCGTGTTGAGGATTCCTATCTTGGTTAGAAACTCCGGGATAAAAATCC
EX902775       <-- CGGCGTGTTGAGGATTCCTATCTTGGTTAGAAACTCCGGGATAAAAATCC
FY446830       <-- CGGCGTGTTGAGGATTCCTATCTTGGTTAGAAACTCCGGGATAAAAATCC
FD941395       <-- CGGCGTGTTGAGGATTCCTATCTTGGTTAGAAACTCCGGGATAAAAATCC
FD561351       <-- CGGCGTGTTGAGGATTCCTATCTTGGTTAGAAACTCCGGGATAAAAATCC
EV544315       --> CGGCGTGTTGAGGACTCCTATCTTGGTTAGAAACTCCGGGATAAAAATCC
EX906959       --> CGGCGTGTTGAGGATTCCTATCTTGGTTAGAAACTCCGGGATAAAAATCC
EX751483       --> CGGCGTGTTGAGGATTCCTATCTTGGTTAGAAACTCCGGGATAAAAATCC

               701    -    751
UN15594        --> CGGCGGCGCCTAACATCGCCCACCGGCAGTGGACTAGCTCTGCTTGTGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX771555       <-- ..................................................
FY437302       <-- CGGCGGCGCCTAACATCGCCCACCGGCAGTGGACTAGCTCTGCTTGTGCG
FY446835       <-- CGGCGGCGCCTAACATCGCCCACCGGCAGTGGA.................
FY439586       <-- CGGCGGCGCCTAACATCGCCCACCGGCAGTGGACTAGCTCTGCTTGTGCG
EV548684       <-- CGGCGGCGCCTAACATCGCCCACCGGCAGTGGACTAGCTCTGCTTGTGCG
EX747240       <-- CGGCGGCGCCTAACATCGCCCACCGGCAGTGGACTAGCTCTGCTTGTGCG
EX902775       <-- CGGCGGCGCCTAACATCGCCCACCGGCAGTGGACTAGCTCTGCTTGTGCG
FY446830       <-- CGGCGGCGCCTAACATCGCCCACCGGCAGTGGACTAGCTCTGCTTGTGCG
FD941395       <-- CGGCGACGCCTAACATCGCCCACCGGCAGTGGACTAGCTCTGCTTGTGCG
FD561351       <-- CGGCGGCGCCTAACATCGCCCACCGGCAGTGGACTAGCTCTGCTTGTGCG
EV544315       --> CGGCGGCGCCTAACATCGCCCACCGGCAGTGGACTAGCTCTGCTTGTGCG
EX906959       --> CGGCGGCGCCTAACATCGCCCACCGGCAGTGGACTAGCTCTGCTTGTGCG
EX751483       --> CGGCGGCGCCTAACATCGCCCACCGGCAGTGGACTAGCTCTGCTTGTGCG

               751    -    801
UN15594        --> TTCCACTTTAGACTATCCGGGTCAGACGAAAGACCAAGAGGATCAAACCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX771555       <-- ..................................................  Raphanus raphanistrum subsp. landra
FY437302       <-- TTCCACTTTAGACTATCCGGGTCAGACGAAAGACCAAGAGGATCAAACCC  Raphanus sativus cv GSK3-1
FY446835       <-- ..................................................  Raphanus sativus cv GSK3-1
FY439586       <-- TTCCACTTTAGACTATCCGGGTCAGACGAAAGACCAAGAGGATCAAACCC  Raphanus sativus cv GSK3-1
EV548684       <-- TTCCACTTTAGACTATCCGGGTCAGATGAAAGACCAAGAGGATCAAACCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX747240       <-- TTCCACTTTAAACTATCCGGGTCAGACGAAAGACCAAGAGGATCAAACCC  Raphanus raphanistrum subsp. maritimus
EX902775       <-- TTCCACTTTAAACTATCCGGGTCAGACGAAAGACCAAGAGGATCAAACCC  Raphanus sativus cv Rat-Tail Radish #3870
FY446830       <-- TTCCACTTTAGACTATCCGGGTCAGACGAAAGACCAAGAGGATCAAACCC  Raphanus sativus cv GSK3-1
FD941395       <-- TTCCACTTTAAGCTATCCGGGTCAGACGAAAGACCAAGAGGATCAAACCC  Raphanus sativus var. oleiformis
FD561351       <-- TTCCACTTTAAACTATCCGGGTCAGACGAAAGACCAAGAGGATCAAACCC  Raphanus sativus var. oleiformis
EV544315       --> TTCCACTTTAGACTATCCGGGTCAGATGAAAGACCAAGAGGATCAAACCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX906959       --> TTCCACTTTAAACTATCCGGGTCAGA........................  Raphanus sativus cv Rat-Tail Radish #3870
EX751483       --> TTCCACTTTAAACTATCCGGGTCAGACGAAAGACCAAGAGGATCAAACCC  Raphanus raphanistrum subsp. maritimus

               801    -    851
UN15594        --> GAAGTCACCGGGGAGGCTACCGTCTAGCCACTCTGGAGGAGTGCTTCCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX771555       <-- ..................................................  Raphanus raphanistrum subsp. landra
FY437302       <-- GAAGTCACCGGGGAGGCTACCATCGAGCCACTCTGGAGGAGTGCTTCCAG  Raphanus sativus cv GSK3-1
FY446835       <-- ..................................................  Raphanus sativus cv GSK3-1
FY439586       <-- GAAGTCACCGGGGAGGCTACCATCGAGCCACTCTGGAGGAGTGCTTCCAG  Raphanus sativus cv GSK3-1
EV548684       <-- GAAGTCACCGGGGAGGCTACCATCGAGCCACTCTGGAGGAGTGCTTCCAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX747240       <-- GAAGTCACCAGGGAGGCTACCGTCTAGCCACGCTGGAGGAGTGCTTCCAG  Raphanus raphanistrum subsp. maritimus
EX902775       <-- GAAGTCACCAGGGAGGCTACCGTCTAGCCACTCTGGAGGAGTGCTTCCAG  Raphanus sativus cv Rat-Tail Radish #3870
FY446830       <-- GAAGTCACCGGGGAGGCTACCATCGAGCCACTCTGGAGGAGTGCTTCCAG  Raphanus sativus cv GSK3-1
FD941395       <-- GAAGTCACCAGGGAGGCTACCGTCTAGCCACTCTGGAGGAGTGCTTCCAG  Raphanus sativus var. oleiformis
FD561351       <-- GAAGTCACCAGGGAGGCTACCGTCTAGCCACTCTGGAGGAGTGCTTCCAG  Raphanus sativus var. oleiformis
EV544315       --> GAAGTCACCGGGGAGGCTACCATCGAGCCACTCTGGAGGAGTGCTTCCAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX906959       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX751483       --> GAAGTCACCAGGGAGGCTACCGTCTAGCCACGCTGGAGGAGTGCTTCCAG  Raphanus raphanistrum subsp. maritimus

               851    -    901
UN15594        --> GGAACCAGATTGGTCTATCCGGATCAGCTGCGGCGGCGCGCACGGACGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX771555       <-- ..................................................
FY437302       <-- GGAACCAGATTGGTCTATCCGGATCAGCTGCGGCGGCGCGCACGGACGCA
FY446835       <-- ..................................................
FY439586       <-- GGAACCAGATTGGTCTATCCGGATCAGCTGCGGCGGCGCGCACGGACGCA
EV548684       <-- GGAACCAGATTGGTCTATCCGGATCAGCTGCGGCG-AGCGCACGGACGCA
EX747240       <-- GGAACCAGATTGGTCTATCCGGATCAGCTGCGGCGGCGCGCACGGACGCA
EX902775       <-- GGAACCAGATTGGTCTATCCGGATCAGCTGCGGCGGCGCGCACGGACGCA
FY446830       <-- GGAACCAGATTGGTCTATCCGGATCAGCTGCGGCGGCGCGCACGGACGCA
FD941395       <-- GGAACCAGATTGGTCTATCCGGATCAGCTGCGGCGGCGCGCACGGACGCA
FD561351       <-- GGAACCAGATTGGTCTATCCGGATCAGCTGCGGCGGCGCGCACGGACGCA
EV544315       --> GGAACCAGATTGGTCTATCCGGATCAGCTGCGGCG-AGCGCACGGACGCA
EX906959       --> ..................................................
EX751483       --> GGAACCAGATTGGTCTATCCCGATCAGCTGCG-CGGCGCGCACGGACGCA

               901    -    951
UN15594        --> GCCGATCTGGAACCAGCTGGAACACTCAACTTCTTGCTCAGCCTCAGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX771555       <-- ..................................................
FY437302       <-- GCCGATCTGGAACCAGCTGGAACACTCAACTTCTTGCTCAGCCTCAGTTT
FY446835       <-- ..................................................
FY439586       <-- GCCGATCTGGAACCAGCTGGAACACTCAACTTCTTGCTCAGCCTCAGTTT
EV548684       <-- GCCGATCTGGAACCAGCTGGAACACTCAACTTCTTGTTCAGCCTCAGTTT
EX747240       <-- GCCGATCTGGAACCAGCTGGAACACTCAACTTCTTGCTCAGCCTCAGTTT
EX902775       <-- GCCGATCTGGAACCAGCTGGAACACTCAACTTCTTGTTCAGCCTCAGTTT
FY446830       <-- GCCGATCTGGAACCAGCTGGAACACTCAACTTCTTGCTCAGCCTCAGTTT
FD941395       <-- GCCGATCTGGAACCAGCTGGAACACTCAACTTCTTGCTCAGCCTCAGTTT
FD561351       <-- GCCGATCTGGAACCAGCTGGAACACTCAACTTCTTGCTCAGCCTCAGTTT
EV544315       --> GCCGATCTGGAACCAGCTGGAACACTCAACTTCTTGtt............
EX906959       --> ..................................................
EX751483       --> GCCGATCTGGAACCAGCTGGAACACTCA-C-TCTTGCTCAGCCTCA....

               951    -   1001
UN15594        --> CTTCCCTCCCAAGAAACCTGGAGAAGAAATAGCGGCGATGGCAGAAGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX771555       <-- ..................................................
FY437302       <-- CTTCCCTCCCAAGAAACCTGGAGAAGAAATAGCGGCGATGGCAGAAGAAG
FY446835       <-- ..................................................
FY439586       <-- CTTCCCTCCCAAGAAACCTGGAGAAGAAATAGCGGCGATGGCAGAAGAAG
EV548684       <-- CTTCCCCCCCAAGAAACCTGGAGAAGAAATAGCGGCCATGGCAGAAGAAG
EX747240       <-- CTTCCCTCCCAAGAAACCTGGAGAAGAAATAGCGGtga............
EX902775       <-- CTTCCCTCCCAAGAAACCTGGAGAAGAAATAGCGGCGATGGCAGAAGAAG
FY446830       <-- CTTCCCTCCCAAGAAACCTGGAGAAGAAATAGCGGCGATGGCAGAAGAAG
FD941395       <-- CTTCCCTCCCAAGAAACCTGGAGAAGAAATAGCGGTGATGGCAGAAGAAG
FD561351       <-- CTTCCCTCCCAAGAAACCTGGAGAAGAAATAGCGGTGATGGCAGAAGAAG
EV544315       --> ..................................................
EX906959       --> ..................................................
EX751483       --> ..................................................

               1001   -   1051
UN15594        --> CACAAAGAGAAGCCATTATTCTCGAAGCTGGTTGACCTTCTTCAAGACTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX771555       <-- ..................................................
FY437302       <-- CACAAAGAGAAGCCATTAT-CTCGAAG.......................
FY446835       <-- ..................................................
FY439586       <-- CACAAAGAGAAGCCATTAT-CTCGAAGCT.....................
EV548684       <-- CACAAAGAGAAGCCATTATTCTCGAAGttg....................
EX747240       <-- ..................................................
EX902775       <-- CACAAAGAGAAGCCATTATTCTCGAAGCTGGTTGACCTTCTTCAAGACTC
FY446830       <-- CACAAAGAGAAGCCATTATTCTCGAAGCTGGTTGACCTTCTTCAAGACTC
FD941395       <-- CACAAAGAGAAGCCATTATTCTCGAAGCTGGTTGACCTTCTTCAAGACTC
FD561351       <-- CACAAAGAGAAGCCATTATTCTAGAAGCTGGTTGACCTTCTTCAAGACTC
EV544315       --> ..................................................
EX906959       --> ..................................................
EX751483       --> ..................................................

               1051   -   1101
UN15594        --> AGAAATGTTAAGTGTTAGGAGAAGAAGAAGAAACGATCGAGTGATGTATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX771555       <-- ..................................................
FY437302       <-- ..................................................
FY446835       <-- ..................................................
FY439586       <-- ..................................................
EV548684       <-- ..................................................
EX747240       <-- ..................................................
EX902775       <-- AGAAATGTTAAGTGTTcc................................
FY446830       <-- AGAAATGTTAAGTGTTAGGAGAAGAAGAAGAAACGATCGAGTGATGTATA
FD941395       <-- AGAAATGTTAAGTGTTAGGAGAAGAAGAAGAAACGATCcc..........
FD561351       <-- AGAAATGTTAAGTGTTcc................................
EV544315       --> ..................................................
EX906959       --> ..................................................
EX751483       --> ..................................................

               1101   -   1151
UN15594        --> AACTATAAAGCTCTATGATGACAGAACTAGATTCTGCTTATCCCTATGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX771555       <-- ..................................................
FY437302       <-- ..................................................
FY446835       <-- ..................................................
FY439586       <-- ..................................................
EV548684       <-- ..................................................
EX747240       <-- ..................................................
EX902775       <-- ..................................................
FY446830       <-- AACTATAAAGCTCTATGATGACAGAACTAGATTCTGCTTATCCCTATGGA
FD941395       <-- ..................................................
FD561351       <-- ..................................................
EV544315       --> ..................................................
EX906959       --> ..................................................
EX751483       --> ..................................................

               1151   -   1201
UN15594        --> TAACGCAGAAAGTTTCCTCATTGGCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX771555       <-- ...........................
FY437302       <-- ...........................
FY446835       <-- ...........................
FY439586       <-- ...........................
EV548684       <-- ...........................
EX747240       <-- ...........................
EX902775       <-- ...........................
FY446830       <-- TAACGCAGAAAGTTTCCTCATTGGCCA
FD941395       <-- ...........................
FD561351       <-- ...........................
EV544315       --> ...........................
EX906959       --> ...........................
EX751483       --> ...........................