RadishBase

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Alignment for radish unigene UN15657

               1      -     51
UN15657        --> GGAGTCCACGGCGTCTTCTCGATTTAATTTAAAAAAAAAAA-GGATCCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX899414       <-- ..................................................
EV543183       <-- ..................................................
EV547059       <-- ..................................................
EY911946       <-- ..................................................
EX891916       <-- ..................................................
EX908730       <-- ..................................................
EX892087       <-- ..................................................
EY896427       <-- ..................................................
FD976941       <-- ..................................................
EY911776       <-- ..................................................
EY945549       <-- ..................................................
EX894009       <-- ..................................................
FD982720       <-- ..................................................
FD944058       <-- ..................................................
EV539385       --> GGAGTCCACGGCGTCTTCTCGATTTAATTTATAAAAAAAAA-GGATCCAA
EY916036       --> GGAGTCCACGGCGTCTTCTCGATTTAATTTAAAAAAAAAAAAGGATCCAA
EY916234       --> GGAGTCCACGGCGTCTTCTCGATTTAATTTAAAAAAAAAAA-GGATCCAA
EV549985       --> .....ggACGGCTTCTTCTCGATTTAATTTAAAAAAAAAAAAGGATCCAA
EV552072       --> .....ggACGGCGTCTTCTCGATTTAATTTATAAAAAAAAA-GGATCCAA
EX746604       --> .....ggACGGCGTCTTCTCGATTTAATTTAAAAAAAAAA---GATCCAA
FD981163       --> .....ggACGGCGTCTTCTCGATTTAATTTATAAAAAAAAA-GGATCCAA
EY901021       --> ..........................ttttttttAAAAAGA-GGATCCAA
FD986468       --> ..........................ttttttttAAAAAGA-GGATCCAA
EX890509       --> ....................................AAAAA-GGATCCAA
EX887879       --> ..............................................aaac
EX895243       --> ..................................................
EX888079       --> ..................................................

               51     -    101
UN15657        --> ACCAGAGAGAGAGAG--A--TA----TGGAAGGAGGAGCTGGTATCTACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX899414       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV543183       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV547059       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY911946       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX891916       <-- ..................................................  Raphanus sativus var. oleiformis
EX908730       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX892087       <-- ..................................................  Raphanus sativus var. oleiformis
EY896427       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD976941       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY911776       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY945549       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX894009       <-- ..................................................  Raphanus sativus var. oleiformis
FD982720       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD944058       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV539385       --> ACCAGAGAGAGAG----C--TA----TGGAAGGAGGAGCTGGTATCTACA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY916036       --> ACCAGAGAGAGAGAG--A--TA----TGGAAGGAGGAGCTGGTATCTACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916234       --> ACCAGAGAGAGAGAG--A--TA----TGGAAGGAGGAGCTGGTGTCTACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV549985       --> ACCAGAGAGAGAGA------TA----TGGAAGGAGGAGCTGGTATCTACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV552072       --> ACCAGAGAGAGAG----C--TA----TGGAAGGAGGAGCTGGTATCTACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX746604       --> ACCAGAGAGAGAGAG--A--TAGCCATGGAAGGAGGAGCTGGTATCTACA  Raphanus raphanistrum subsp. maritimus
FD981163       --> ACCAGAGAGAGAG----C--TA----TGGAAGGAGGAGCTGGTATCTACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY901021       --> ACCAGAGAGAGAGAGTGC--TA----TGGAAGGAGGAGCTGGTATCTACA  Raphanus raphanistrum subsp. maritimus
FD986468       --> ACCAGAGAGAGAGTG--C--TA----TGGAAGGAGGAGCTGGTATCTACA  Raphanus raphanistrum subsp. landra
EX890509       --> ACCAGAGAGAGAGAG--AGATA----TGGAAGGAGGAGCTGGTGTCTACA  Raphanus sativus var. oleiformis
EX887879       --> cagAGAGAGAGAGAG--A--TA----TGGAAGGAGGAGCTGGTGTCTACA  Raphanus sativus var. oleiformis
EX895243       --> ...........gGAG--A--TA----TGGAAGGAGGAGCTGGTGTCTACA  Raphanus sativus cv Early Scarlet Globe
EX888079       --> ..................................................  Raphanus sativus var. oleiformis

               101    -    151
UN15657        --> ATCCTCGCACTGTCGAAGAAGTTTTCAGGGATTTCAAAGGCCGTAGAGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX899414       <-- ..................................................
EV543183       <-- ..................................................
EV547059       <-- ..................................................
EY911946       <-- ..................................................
EX891916       <-- ..................................................
EX908730       <-- ..................................................
EX892087       <-- ..................................................
EY896427       <-- ..................................................
FD976941       <-- ..................................................
EY911776       <-- ..................................................
EY945549       <-- ..................................................
EX894009       <-- ..................................................
FD982720       <-- ..................................................
FD944058       <-- ..................................................
EV539385       --> ATCCTCGCACTGTCGAAGAAGTTTTCAGGGATTTCAAAGGCCGTAGAGCC
EY916036       --> ATCCTCGCACTGTCGAAGAAGTTTTCAGGGATTTCAAAGGCCGTAGAGCC
EY916234       --> ATCCTCGCACTGTCGAAGAAGTTTTCAGGGATTTCAAAGGCCGTAGAGCC
EV549985       --> ATCCTCGCACTGTCGAAGAAGTTTTCAGGGATTTCAAAGGCCGTAGAGCC
EV552072       --> ATCCTCGCACTGTCTAAGAAGTTTTCAGGGATTTCAAAGGCCGTAGAGCC
EX746604       --> ATCCTCGCACTGTCGAAGAAGTTTTCAGAGATTTCAAAGGCCGTAGAGCC
FD981163       --> ATCCTCGCACTGTCGAAGAAGTTTTCAGGGACTTCAAAGGCCGTAGAGCC
EY901021       --> ACCCACGCACTGTCGAAGAAGTTTTCAGGGATTTCAAAGGCCGTAGAGCC
FD986468       --> ACCCACGCACTGTCGAAGAAGTTTTCAGGGATTTCAAAGGCCGTAGAGCC
EX890509       --> ATCCTCGCACTGTCGAAGAAGTTTTCAGGGATTTCAAAGGCCGTAGAGCC
EX887879       --> ATCCTCTCACTGTCGAAGAAGTTTTCAGGGATTTCAAAGGCCGTAGAGCC
EX895243       --> ATCCTCGCACTGTCGAAGAAGTTTTCAGGGATTTCAAAGGCCGTAGAGCC
EX888079       --> ..................................................

               151    -    201
UN15657        --> GCCATTGTCAAAGCTCTCACCTCCGATGTTGCAGAGTTTTACCAGCAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX899414       <-- ......................CCGATGTTGCAGAGTTT-ACCAGCAATG
EV543183       <-- ........................................ACCAGCAATG
EV547059       <-- ...............................................ATG
EY911946       <-- ..................................................
EX891916       <-- ..................................................
EX908730       <-- ..................................................
EX892087       <-- ..................................................
EY896427       <-- ..................................................
FD976941       <-- ..................................................
EY911776       <-- ..................................................
EY945549       <-- ..................................................
EX894009       <-- ..................................................
FD982720       <-- ..................................................
FD944058       <-- ..................................................
EV539385       --> GCCATTGTCAAAGCTCTCACCTCCGATGTTGCAGAGTTTTACCAGCAATG
EY916036       --> GCCATTGTCAAAGCTCTCACCTCCGATGTTGCAGAGTTTTACCAGCAATG
EY916234       --> GCCATTGTCAAAGCTCTCACCTCCGATGCTGCAGAGTTTTACCAGCAATG
EV549985       --> GCCATTGTCAAAGCTCTCACCTCCGATGTTGCAGAGTTTTACCAGCAATG
EV552072       --> GCCATTGTCAAAGCTCTCACCTCCGATGTTGCAGAGTTTTACCTGCAATG
EX746604       --> GCCATTGTCAAAGCTCTCACCTCCGATGTTGCAGAGTTTTACCAGCAATG
FD981163       --> GCCATTGTCAAAGCTCTCACCTCCGATGTTGCAGAGTTTTACCAGCAATG
EY901021       --> GCCATTGTCAAAGCTCTCACCTCCGATGTTGCAGAGTTTTACCAGCAATG
FD986468       --> GCCATTGTCAAAGCTCTCACCTCCGATGTTGCAGAGTTTTACCAGCAATG
EX890509       --> GCCATTGTCAAAGCTCTCACCTCCGATGTTGCAGAGTTTTACCAGCAATG
EX887879       --> GCCATTGTCAAAGCTCTCACCTCCGATGTTGCAGAGTTTTACCAGCAATG
EX895243       --> GCCATTGTCAAAGCTCTCACCTCCGATGTTGCAGAGTTTTACCAGCAATG
EX888079       --> ..................................................

               201    -    251
UN15657        --> CGATCCTGAGAAGGAGAATCTGTGCTTGTATGGGTTACCGAACGAACAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX899414       <-- CGATC-TGAGAAGGAGAATCTGTGCTTGTATGGGT-ACCAAACGAACAAT  Raphanus sativus cv Early Scarlet Globe
EV543183       <-- CGATCCTGCGAAGGAGAATCTTTGCTTGTATGGGTTACCGAACGAACAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV547059       <-- CGATC-TGAGAAGGAGAATCTTTGCTTGTATGGGTTACCAAACGAACAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY911946       <-- ...............GAATCTGTGCTTGTATGGGTTACCAAACGAACATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX891916       <-- ..................TCTGTGCTTGTATGGGTTACCGAACGAACAAT  Raphanus sativus var. oleiformis
EX908730       <-- ....................TGTGCTTGTATGGGTTACCGAACGAACAAT  Raphanus sativus cv Rat-Tail Radish #3870
EX892087       <-- ...........................GTATGGGTTACCGAACGAACAAT  Raphanus sativus var. oleiformis
EY896427       <-- ..........................................ctAACAAT  Raphanus raphanistrum subsp. maritimus
FD976941       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY911776       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY945549       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX894009       <-- ..................................................  Raphanus sativus var. oleiformis
FD982720       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD944058       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV539385       --> CGATCCTGCGAAGGAGAATCTTTGCTTGTATGGGTTACCGAACGAACAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY916036       --> CGATCCTGAGAAGGAGAATCTTTGCTTGTATGGGTTACCAAACGAACAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916234       --> CGATCCTGAGAAGGAGAATCTGTGCTTGTATGGGTTACCAAACGAACATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV549985       --> CGATCCTGAGAAGGAGAATCTTTGCTTGTATGGGTTACCAAACGAACAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV552072       --> CGATCCTGAGAAGGAGAATCTTTGCTTGTATGGGTTACCAAACGAACAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX746604       --> CGATCCTGAGAAGGAAAATCTTTGCTTGTATGGGTTACCAAACGAACAGT  Raphanus raphanistrum subsp. maritimus
FD981163       --> CGATCCTGAGAAGGAGAATCTTTGCTTGTATGGGTTACCAAACGAACAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY901021       --> CGATCCTGAGAAGGAGAATCTGTGCTTGTATGGGTTACCGAACTAACAAT  Raphanus raphanistrum subsp. maritimus
FD986468       --> CGATCCTGAGAAGGAGAATCTGTGCTTGTATGGGTTACCGAACGAACAAT  Raphanus raphanistrum subsp. landra
EX890509       --> CGATCCTGAGAAGGAGAATCTGTGCTTGTATGGGTTACCGAACGAACAAT  Raphanus sativus var. oleiformis
EX887879       --> CGATCCTGAGAAGGAGAATCTGTGCTTGTATGGGTTACCGAACGAACAAT  Raphanus sativus var. oleiformis
EX895243       --> CGATCCTGAGAAGGAGAATCTGTGCTTGTATGGGTTACCAAACGAACAAT  Raphanus sativus cv Early Scarlet Globe
EX888079       --> .ggTCCTGAGAAGGAGAATCTGTGCTTGTATGGGTTACCGAACGAACAAT  Raphanus sativus var. oleiformis

               251    -    301
UN15657        --> GGGAAGTGAACTTACCAGCAGAAGAAGTGCCTCCGGAGCTTCCAGAGCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX899414       <-- GGGAAGTGAACTTACCAGCAGAAGAAGTGCCTCCGGAGCTTCCAGAGCCA  Raphanus sativus cv Early Scarlet Globe
EV543183       <-- GGGAAGTGAACTTACCAGCAGAAGAAGTGCCTCCAGAGCTTCCAGAGCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV547059       <-- GGGAAGTGAACTTACCAGCAGAAGAAGTGCCTCCAGAGCTTCCAGAGCCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY911946       <-- GGGAAGTGAACTTACCAGCAGAAGAAGTGCCTCCGGAGCTTCCAGAGCCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX891916       <-- GGGAAGTGAACTTACCAGCAGAAGAAGTGCCTCCGGAGCTTCCAGAGCCA  Raphanus sativus var. oleiformis
EX908730       <-- GGGAAGTGAACTTACCAGCAGAAGAAGTGCCTCCGGAGCTTCCAGAGCCA  Raphanus sativus cv Rat-Tail Radish #3870
EX892087       <-- GGGAAGTGAACTTACCAGCAGAAGAAGTGCCTCCGGAGCTTCCAGAGCCA  Raphanus sativus var. oleiformis
EY896427       <-- GGGAAGTGAACTTACCAGCAGAAGAAGTGCCTCCGGAGCTTCCAGAGCCA  Raphanus raphanistrum subsp. maritimus
FD976941       <-- ..GAAGTGAACTTACCAGCAGAAGAAGTGCCTCCAGAGCTTCCAGAGCCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY911776       <-- ...AAGTGAACTTACCAGCAGAAGAAGTGC-TCCAGAGCTTCCAGAGCCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY945549       <-- .....................................GCTTCCAGAGCCA  Raphanus sativus cv Rat-Tail Radish #3870
EX894009       <-- ..................................................  Raphanus sativus var. oleiformis
FD982720       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD944058       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV539385       --> GGGAAGTGAACTTACCAGCAGAAGAAGTGCCTCCAGAGCTTCCAGAGCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY916036       --> GGGAAGTGAACTTACCAGCAGAAGAAGTGCCTCCAGAGCTTCCAGAGCCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916234       --> GGGAAGTGAACTTACCAGCAGAAGAAGTGCCTCCGGAGCTTCCAGAGCCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV549985       --> GGGAAGTGAACTTACCAGCAGAAGAAGTGCCTCCAGAGCTTCCAGAGCCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV552072       --> GGGAAGTGAACTTACCAGCAGAAGAAGTGCCTCCAGAGCTTCCAGAGCCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX746604       --> GGGAAGTGAACTTACCAGCAGAAGAAGTGCCTCCAGAGCTTCCAGAGCCA  Raphanus raphanistrum subsp. maritimus
FD981163       --> GGGAAGTGAACTTACCAGCAGAAGAAGTGCCTCCAGAGCTTCCAGAGCCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY901021       --> GGGAAGTGAACTTACCAGCAGAAGAAGTGCCTCCGGAGCTTCCAGAGCCA  Raphanus raphanistrum subsp. maritimus
FD986468       --> GGGAAGTGAACTTACCAGCAGAAGAAGTGCCTCCAGAGCTTCCAGAGCCA  Raphanus raphanistrum subsp. landra
EX890509       --> GGGAAGTGAACTTACCAGCAGAAGAAGTGCCTCCGGAGCTTCCAGAGCCA  Raphanus sativus var. oleiformis
EX887879       --> GGGAAGTGAACTTACCAGCAGAAGAAGTGCCTCCGGAGCTTCCAGAGCCA  Raphanus sativus var. oleiformis
EX895243       --> GGGAAGTGAACTTACCAGCAGAAGAAGTGCCTCCGGAGCTTCCAGAGCCA  Raphanus sativus cv Early Scarlet Globe
EX888079       --> GGGAAGTGAACTTACCAGCAGAAGAAGTGCCTCCGGAGCTTCCAGAGCCA  Raphanus sativus var. oleiformis

               301    -    351
UN15657        --> GCTCTAGGCATTAACTTTGCAAGAGATGGACTCTCTGAGAAGGAATGGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX899414       <-- GCTCTAGGCATTAACTTTGCAAGAGATGGACTCTCTGAGAAGGAATGGCT  Raphanus sativus cv Early Scarlet Globe
EV543183       <-- GCTCTAGGCATTAACTTTGCAAGAGATGGACTCTCTGAGAAGGAATGGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV547059       <-- GCTCTAGGCATTAACTTTGCAAGAGATGGACTCTCTGAGAAGGAATGGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY911946       <-- GCTCTAGGCATTAACTTTGCAAGAGATGGACTCTCTGAGAAGGAATGGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX891916       <-- GCTCTAGGCATTAACTTTGCAAGAGATGGACTCTCTGAGAAGGAATGGCT  Raphanus sativus var. oleiformis
EX908730       <-- GCTCTAGGCATTAACTTTGCAAGAGATGGACTCTCTGAGAAGGAATGGCT  Raphanus sativus cv Rat-Tail Radish #3870
EX892087       <-- GCTCTAGGCATTAACTTTGCAAGAGATGGACTCTCTGAGAAGGAATGGCT  Raphanus sativus var. oleiformis
EY896427       <-- GCTCTAGGCATTAACTTTGCAAGAGATGGGCTCTCTGAGAAGGAATGGCT  Raphanus raphanistrum subsp. maritimus
FD976941       <-- GCTCTAGGCATTAACTTTGCAAGAGATGGACTCTCTGAGAAGGAATGGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY911776       <-- GCTCTAGGCATTAACTTTGCAAGAGATGGACTCTCTGAGAAGGAATGGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY945549       <-- GCTCTAGGCATTAACTTTGCAAGAGATGGACTCTCTGAGAAGGAATGGCT  Raphanus sativus cv Rat-Tail Radish #3870
EX894009       <-- .........ATTAACTTTGCAAGAGATGGACTCTCTGAGAAGGAATGGCT  Raphanus sativus var. oleiformis
FD982720       <-- ...............TTTGCAAGAGATGGGCTCTCTGAGAAGGAATGGCT  Raphanus raphanistrum subsp. landra
FD944058       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV539385       --> GCTCTAGGCATTAACTTTGCAAGAGATGGACTCTCTGAGAAGGAATGGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY916036       --> GCTCTAGGCATTAACTTTGCAAGAGATGGACTCTCTGAGAAGGAATGGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916234       --> GCTCTAGGCATTAACTTTGCAAGAGATGGACTCTCTGAGAAGGAATGGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV549985       --> GCTCTAGGCATTAACTTTGCAAGAGATGGACTCTCTGAGAAGGAATGGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV552072       --> GCTCTAGGCATTAACTTTGCAAGAGATGGACTCTCTGAGAAGGAATGGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX746604       --> GCTCTAGGCATTAACTTTGCAAGAGATGGGCTCTCTGAGAAGGAATGGCT  Raphanus raphanistrum subsp. maritimus
FD981163       --> GCTCTAGGCATTAACTTTGCAAGAGATGGACTCTCTGAGAAGGAATGGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY901021       --> GCTCTAGGCATTAACTTTGCAAGAGATGGGCTCTCTGAGAAGGAATGGCT  Raphanus raphanistrum subsp. maritimus
FD986468       --> GCTCTAGGCATTAACTTTGCAAGAGATGGGCTCTCTGAGAAGGAATGGCT  Raphanus raphanistrum subsp. landra
EX890509       --> GCTCTAGGCATTAACTTTGCAAGAGATGGACTCTCTGAGAAGGAATGGCT  Raphanus sativus var. oleiformis
EX887879       --> GCTCTAGGCATTAACTTTGCAAGAGATGGACTCTCTGAGAAGGAATGGCT  Raphanus sativus var. oleiformis
EX895243       --> GCTCTAGGCATTAACTTTGCAAGAGATGGACTCTCTGAGAAGGAATGGCT  Raphanus sativus cv Early Scarlet Globe
EX888079       --> GCTCTAGGCATTAACTTTGCAAGAGATGGACTCTCTGAGAAGGAATGGCT  Raphanus sativus var. oleiformis

               351    -    401
UN15657        --> TTCTCTTGTTGCTATCCACAGTGACACTTGGTTGCTCTCCGTCTCTTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX899414       <-- TTCTCTTGTTGCTATCCACAGTGACACTTGGCTGCTCTCCGTCTCTTTTT
EV543183       <-- TTCTCTTGTTGCTATCCACAGTGACACTTGGTTGCTCTCCGTCTCTTTTT
EV547059       <-- TTCTCTTGTTGCTATCCACAGTGACACTTGGTTGCTCTCCGTCTCTTTTT
EY911946       <-- TTCTCTTGTGGCTATCCACAGTGACACTTGGTTGCTCTCCGTCTCTTTTT
EX891916       <-- TTCTCTTGTTGCTATCCACAGTGACACTTGGTTGCTCTCCGTCTCTTTTT
EX908730       <-- TTCTCTTGTTGCTATCCACAGTGACACTTGGTTGCTCTCCGTCTCTTTTT
EX892087       <-- TTCTCTTGTTGCTATCCACAGTGACACTTGTTTGCTCTCCGTCTCTTTTT
EY896427       <-- TTCTCTTGTTGCTATCCACAGTGACACTTGGTTGCTCTCTGTCTCTTTTT
FD976941       <-- TTCTCTTGTTGCTATCCACAGTGACACTTGGTTGCTCTCCGTCTCTTTTT
EY911776       <-- TTCTCTTGTTGCTATCCACAGTGACACTTGGTTGCTCTCCGTCTCTTTTT
EY945549       <-- TTCTCTTGTTGCTATCCACAGTGACACTTGGTTGCTCTCCGTCTCTTTTT
EX894009       <-- TTCTCTTGTTGCTATCCACAGTGACACTTGGTTGCTCTCCGTCTCTTTTT
FD982720       <-- TTCTCTTGTTGCTATCCACAGTGACACTTGGTTGCTCTCTGTCTCTTTTT
FD944058       <-- .............................................TTTTT
EV539385       --> TTCTCTTGTTGCTATCCACAGTGACACTTGGTTGCTCTCCGTCTCTTTTT
EY916036       --> TTCTCTTGTTGCTATCCACAGTGACACTTGGTTGCTCTCCGTCTCTTTTT
EY916234       --> TTCTCTTGTGGCTATCCACAGTGACACTTGGTTGCTCTCCGTCTCTTTTT
EV549985       --> TTCTCTTGTTGCTATCCACAGTGACACTTGGTTGCTCTCCGTCTCTTTTT
EV552072       --> TTCTCTTGTTGCTATCCACAGTGACACTTGGTTGCTCTCCGTCTCTTTTT
EX746604       --> TTCTCTTGTTGCTATCCACAGTGACACTTGGTTGCTCTCCGTCTCTTTTT
FD981163       --> TTCTCTTGTTGCTATCCACAGTGACACTTGGTTGCTCTCCGTCTCTTTTT
EY901021       --> TTCTCTTGTTGCTATCCACAGTGACACTTGGTTGCTCTCTGTCTCTTTTT
FD986468       --> TTCTCTTGTTGCTATCCACAGTGACACTTGGTTGCTCTCTGTCTCTTTTT
EX890509       --> TTCTCTTGTTGCTATCCACAGTGACACTTGGTTGCTCTCCGTCTCTTTTT
EX887879       --> TTCTCTTGTTGCTATCCACAGTGACACTTGGTTGCTCTCCGTCTCTTTTT
EX895243       --> TTCTCTTGTTGCTATCCACAGTGACACTTGGCTGCTCTCCGTCTCTTTTT
EX888079       --> TTCTCTTGTTGCTATCCACAGTGACACTTGTTTGCTCTCCGTCTCTTTTT

               401    -    451
UN15657        --> ACTTCGGCTCCAGATTCGCTTTCGACAAATATGAGAGGAAACGCTTGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX899414       <-- ACTTCGGCTCCAGATTCGCTTTCGACAAATATGAGAGGAAACGCTTGTTT  Raphanus sativus cv Early Scarlet Globe
EV543183       <-- ACTTCGGCTCCAGATTCGCTTTCGACAAATATGAGAGGAAACGCTTGTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV547059       <-- ACTTCGGCTCCAGATTCGCTTTCGACAAATACGAGAGGAAACGCTTGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY911946       <-- ACTTCGGCTCCAGATTCGCTTTCGACAAATATGAGAGGAAACGCTTGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX891916       <-- ACTTCGGCTCCAGATTCGCTTTCGACAAATATGAGAGGAAACGCTTGTTT  Raphanus sativus var. oleiformis
EX908730       <-- ACTTCGGCTCCAGATTCGCTTTCGACAAATATGAGAGGAAACGCTTGTTT  Raphanus sativus cv Rat-Tail Radish #3870
EX892087       <-- ACTTCGGCTCCAGATTCGCTTTCGACAAATATGAG--AAAACGCTTGTTT  Raphanus sativus var. oleiformis
EY896427       <-- ACTTCGGCTCCAGATTCGCTTTCGACAAATACGAGAGGAAACGCTTGTTT  Raphanus raphanistrum subsp. maritimus
FD976941       <-- ACTTCGGCTCCAGATTCGCTTTCGACAAATACGAGAGGAAACGCTTGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY911776       <-- ACTTCGGCTCCAGATTCGCTTTCGACAAATATGAGAGGAAACGCTTGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY945549       <-- ACTTCGGCTCCAGATTCGCTTTCGACAAATATGAGAGGAAACGCTTGTTT  Raphanus sativus cv Rat-Tail Radish #3870
EX894009       <-- ACTTCGGCTCCAGATTCGCTTTCGACAAATATGAGAGGAAACGCTTGTTT  Raphanus sativus var. oleiformis
FD982720       <-- ACTTCGGCTCCAGATTCGCTTTCGACAAATACGAGAGGAAACGCTTGTCC  Raphanus raphanistrum subsp. landra
FD944058       <-- ACTTCGGCTCCAGATTCGCTTTCGACAAATATGAGAGGAAACGCTTGTTT  Raphanus sativus cv Early Scarlet Globe
EV539385       --> ACTTCGGCTCCAGATTCGCTTTCGACAAATATGAGAGGAAACGCTTGTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY916036       --> ACTTCGGCTCCAGATTCGCTTTCGACAAATATGAGAGGAAACGCTTGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916234       --> ACTTCGGCTCCAGATTCGCTTTCGACAAATATGAGAGGAAACGCTTGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV549985       --> ACTTCGGCTCCAGATTCGCTTTCGACAAATATGAGAGGAAACGCTTGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV552072       --> ACTTCGGCTCCAGATTCGCTTTCGACAAATACGAGAGGAAACGCTTGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX746604       --> ACTTCGGCTCCAGATTCGCTTTCGACAAATATGAGAGGAAACGCTTGTTT  Raphanus raphanistrum subsp. maritimus
FD981163       --> ACTTCGGCTCCAGATTCGCTTTCGACAAATACGAGAGGAAACGCTTGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY901021       --> ACTTCGGCTCCAGATTCGCTTTCGACAAATACGAGAGGAAACGCTTGTTT  Raphanus raphanistrum subsp. maritimus
FD986468       --> ACTTCGGCTCCAGATTCGCTTTCGACAAATACGAGAGGAAACGCTTGTCC  Raphanus raphanistrum subsp. landra
EX890509       --> ACTTCGGCTCCAGATTCGCTTTCGACAAATATGAGAGGAAACGCTTGTTT  Raphanus sativus var. oleiformis
EX887879       --> ACTTCGGCTCCAGATTCGCTTTCGACAAATATGAGAGGAAACGCTTGTTT  Raphanus sativus var. oleiformis
EX895243       --> ACTTCGGCTCCAGATTCGCTTTCGACAAATATGAGAGGAAACGCTTGTTT  Raphanus sativus cv Early Scarlet Globe
EX888079       --> ACTTCGGCTCCAGATTCGCTTTCGACAAATATGAGA--AAACGCTTGTTT  Raphanus sativus var. oleiformis

               451    -    501
UN15657        --> GATATGATCAATGGGGTTCCTACCATATTTGAAGTAGTCACTGGAAATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX899414       <-- GATATGATCAATGGGGTTCCTACCATATTTGAAGTCGTCACTGGAAATAT  Raphanus sativus cv Early Scarlet Globe
EV543183       <-- GATATGATCAATGGGATTCCTACCATATTTGAAGTAGTCACTGGAAATAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV547059       <-- GATATGATCAATGGGGTTCCTACCATATTTGAAGTCGTCACTGGAAATAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY911946       <-- GATATGATCAATGGGGTTCCTACCATATTTGAAGTAGTCACTGGAAATAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX891916       <-- GATATGATCAATGGGGTTCCTACCATATTTGAAGTAGTCACTGGAAATAT  Raphanus sativus var. oleiformis
EX908730       <-- GATATGATCAATGGGGTTCCTACCATATTTGAAGTAGTCACTGGAAATAT  Raphanus sativus cv Rat-Tail Radish #3870
EX892087       <-- GATATGATCAATGGGGTTCCTACCATATTTGAAGTAGTCACTGGAAATAT  Raphanus sativus var. oleiformis
EY896427       <-- GATATGATCAATGGGGTTCCTACCATATTTGAAGTCGTCACTGGAAATAT  Raphanus raphanistrum subsp. maritimus
FD976941       <-- GATATGATCAATGGGGTTCCTACCATATTTGAAGTCGTCACTGGAAATAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY911776       <-- GATATGATCAATGGGATTCCTACCATATTTGAAGTAGTCACTGGAAATAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY945549       <-- GATATGATCAATGGGGTTCCTACCATATTTGAAGTAGTCACTGGAAATAT  Raphanus sativus cv Rat-Tail Radish #3870
EX894009       <-- GATATGATCAATGGGGTTCCTACCATATTTGAAGTAGTCACTGGAAATAT  Raphanus sativus var. oleiformis
FD982720       <-- GATATGATCAATGGGGTTCCTACCATATTTGAAGTAGTCACTGGAAATAT  Raphanus raphanistrum subsp. landra
FD944058       <-- GATATGATCAATGGGGTTCCTACCATATTTTAAGTCGTCACTGGAAATAT  Raphanus sativus cv Early Scarlet Globe
EV539385       --> GATATGATCAATGGGATTCCTACCATATTTGAAGTAGTCACTGGAAATAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY916036       --> GATATGATCAATGGGATTCCTACCATATTTGAAGTAGTCACTGGAAATAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916234       --> GATATGATCAATGGGGTTCCTACCATATTTGAAGTAGTCACTGGAAATAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV549985       --> GATATGATCAATGGGATTCCTACCATATTTGAAGTAGTCACTGGAAATAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV552072       --> GATATGATCAATGGGGTTCCTACCATATTTGAAGTCGTCACTGGAAATAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX746604       --> GATATGATCAATGGGATTCCTACCATATTTGAAGTAGTCACTGGAAATAT  Raphanus raphanistrum subsp. maritimus
FD981163       --> GATATGATCAATGGGGTTCCTACCATATTTGAAGTCGTCACTGGAAATAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY901021       --> GATATGATCAATGGGGTTCCTACCATATTTGAAGTCGTCACTGGAAATAT  Raphanus raphanistrum subsp. maritimus
FD986468       --> GATATGATCAATGGGGTTCCTACCATATTTGAAGTAGTCACTGGAAATAT  Raphanus raphanistrum subsp. landra
EX890509       --> GATATGATCAATGGGGTTCCTACCATATTTGAAGTAGTCACTGGAAATAT  Raphanus sativus var. oleiformis
EX887879       --> GATATGATCAATGGGGTTCCTACCATATTTGAAGTAGTCACTGGAAATAT  Raphanus sativus var. oleiformis
EX895243       --> GATATGATCAATGGGGTTCCTACCATATTTGAAGTCGTCACTGGAAATAT  Raphanus sativus cv Early Scarlet Globe
EX888079       --> GATATGATCAATGGGGTTCCTACCATATTTGAAGTAGTCACTGGAAATAT  Raphanus sativus var. oleiformis

               501    -    551
UN15657        --> GAAAAAGCAAACTAAGGATAAGTCCTCTGCTTCAAATCGAAATGGCAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX899414       <-- GAAAAAGCAAACTAAGGATAAGTCCTCTGCTTCAAATCGAAATGGCAGTC  Raphanus sativus cv Early Scarlet Globe
EV543183       <-- GAAAAAGCAAACTAAGGAAAAGTCCTCTGCTTCAAATCGAAATGGCAATC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV547059       <-- GAAAAAGCAAACTAAGGATAAGTCCTCTGCTTCAAATCGAAATGGCAATC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY911946       <-- GAAAAAGCAAACAAAGGATAAGTCCTCTGCTTCAAATCGAAATGGCAGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX891916       <-- GAAAAAGCAAACTAAGGATAAGTCCTCTGCTTCAAATCGAAATGGCAATC  Raphanus sativus var. oleiformis
EX908730       <-- GAAAAAGCAAACTAAGGATAAGTCCTCTGCTTCAAATCGAAATGGCAATC  Raphanus sativus cv Rat-Tail Radish #3870
EX892087       <-- GAAAAAGCAAACTAAGGATAAGTCCTCTGCTTCAAATCGAAATGGCAATC  Raphanus sativus var. oleiformis
EY896427       <-- GAAAAAGCAAACTAAGGATAAGTCCTCTGCTTCAAATCGAAATGGCAATC  Raphanus raphanistrum subsp. maritimus
FD976941       <-- GAAAAAGCAAACTAAGGATAAGTCCTCTGCTTCAAATCGAAATGGCAATC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY911776       <-- GAAAAAGCAAACTAAGGATAAGTCCTCTGCTTCAAATCGAAATGGCAATC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY945549       <-- GAAAAAGCAAACTAAGGATAAGTCCTCTGCTTCAAATCGAAATGGCAATC  Raphanus sativus cv Rat-Tail Radish #3870
EX894009       <-- GAAAAAGCAAACTAAGGATAAGTCCTCTGCTTCAAATCGAAATGGCAATC  Raphanus sativus var. oleiformis
FD982720       <-- GAAAAAGCAAACAAAGGATAAGTCCTCTGCTTCAAATCGAAATGGCAATC  Raphanus raphanistrum subsp. landra
FD944058       <-- GAAAAAGCAAACTAAGGATAAGTCCTCTGCTTCGAATCGAAATGGCAGTC  Raphanus sativus cv Early Scarlet Globe
EV539385       --> GAAAAAGCAAACTAAGGAAAAGTCCTCTGCTTCAAATCGAAATGGCAATC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY916036       --> GAAAAAGCAAACTAAGGATAAGTCCTCTGCTTCAAATCGAAATGGCAATC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916234       --> GAAAAAGCAAACAAAGGATAAGTCCTCTGCTTCAAATCGAAATGGCAGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV549985       --> GAAAAAGCAAACTAAGGATAAGTCCTCTACTTCAAATCGAAATGGCAATC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV552072       --> GAAAAAGCAAACTAAGGATAAGTCCTCTGCTTCAAATCGAAATGGCAATC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX746604       --> GAAAAAGCAAACTAAGGAAAAGTCCTCTGCTTCAAATCGAAATGGCAATC  Raphanus raphanistrum subsp. maritimus
FD981163       --> GAAAAAGCAAACTAAGGATAAGTCCTCTGCTTCAAATCGAAATGGCAATC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY901021       --> GAAAAAGCAAACTAAGGATAAGTCCTCTGCTTCAAATCGAAATGGCAATC  Raphanus raphanistrum subsp. maritimus
FD986468       --> GAAAAAGCAAACAAAGGATAAGTCCTCTGCTTCAAATCGAAATGGCAATC  Raphanus raphanistrum subsp. landra
EX890509       --> GAAAAAGCAAACTAAGGATAAGTCCTCTGCTTCAAATCGAAATGGCAATC  Raphanus sativus var. oleiformis
EX887879       --> GAAAAAGCAAACTAAGGATAAGTCCTCTGCTTCAAATCGAAATGGCAATC  Raphanus sativus var. oleiformis
EX895243       --> GAAAAAGCAAACTAAGGATAAGTCCTCTGCTTCAAATCGAAATGGCAGTC  Raphanus sativus cv Early Scarlet Globe
EX888079       --> GAAAAAGCAAACTAAGGATAAGTCCTCTGCTTCAAATCGAAATGGCAATC  Raphanus sativus var. oleiformis

               551    -    601
UN15657        --> TATCCAAGTCGGATTCCAAAGTGAGATCTTCAGATGGCAAAAGCTCAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX899414       <-- TATCCAAGTCGGATTCCAAAGTGAGATCTTCAGATGGCAAAAGCTCAAAG
EV543183       <-- TATCCAAGTCGGATTCCAAAGTGAGATCTTCAGATGGCAAAAGCTCAAAG
EV547059       <-- TATCCAAGTCGGATTCCAAAGTGAGATCTTCAGATGGCAAAAGCTCAAAG
EY911946       <-- TATCCAAGTCGGATTCCAAAGTGAGATCTTCAGATGGCAAAAGCTCAAAG
EX891916       <-- TATCCAAGTCGGATTCCAAAGTGAGATCTTCAGATGGCAAAAGCTCAAAG
EX908730       <-- TATCCAAGTCGGATTCCAAAGTGAGATCTTCAGATGGCAAAAGCTCAA-G
EX892087       <-- TATCCAAGTCGGATTCCAAAGTGAGATCTTCAGATGGCAAAAGCTCAAAG
EY896427       <-- TATCCAAGTCGGATTCCAAAGTGAGATCTTCAGATGGCAAAAGCTCAAAG
FD976941       <-- TATCCAAGTCGGATTCCAAAGTGAGATCTTCAGACGGCAAAAGCTCAAAG
EY911776       <-- TATCCAAGTCGGATTCCAAAGTGAGATCTTCAGATGGCAAAAGCTCAAAG
EY945549       <-- TATCCAAGTCGGATTCCAAAGTGAGATCTTCAGATGGCAAAAGCTCAA-G
EX894009       <-- TATTCAAGTCGGATTCCAAAGTGAGATCTTCAGATGGCAAAAGCTCAAAG
FD982720       <-- TATCCAAGTCGGATTCCAAAGTGAGATCTTCAGATGGCAAAAGCTCAAAG
FD944058       <-- TATCCAAGTCGGATTCCAAAGTGAGATCTTCAGATGGCAAAAGCTCAAAG
EV539385       --> TATCCAAGTCGGATTCCAAAGTGAGATCTTCAGATGGCAAAAGCTCAAAG
EY916036       --> TATCCAAGTCGGATTCCAAAGTGAGATCTTCAGATGGCAAAAGCTCAAAG
EY916234       --> TATCCAAGTCGGATTCCAAAGTGAGATCTTCAGATGGCAAAAGCTCAAAG
EV549985       --> TATCCAAGTCGGATTCCAAAGTGAGATCTTCAGATGGCAAAAGCTCAAAG
EV552072       --> TATCCAAGTCGGATTCCAAAGTGAGATCTTCAGATGGCAAAAGCTCAAAG
EX746604       --> TATCCAAGTCGGATTCCAAAGTGAGATCTTCAGATGGCAAAAGCTCAAAG
FD981163       --> TATCCAAGTCGGATTCCAAAGTGAGATCTTCAGACGGCAAAAGCTCAAAG
EY901021       --> TATCCAAGTCGGATTCCAAAGTGAGATCTTCAGATGGCAAAAGCTCAAAG
FD986468       --> TATCCAAGTCGGATTCCAAAGTGAGATCTTCAGATGGCAAAAGCTCAAAG
EX890509       --> TATTCAAGTCGGATTCCAAAGTGAGATCTTCAGATGGCAAAAGCTCAAAG
EX887879       --> TATCCAAGTCGGATTCCAAAGTGAGATCTTCAGATGGCAAAAGCTCAAAG
EX895243       --> TATCCAAGTCGGATTCCAAAGTGAGATCTTCAGATGGCAAAAGCTCAAAG
EX888079       --> TATCCAAGTCGGATTCCAAAGTGAGATCTTCAGATGGCAAAAGCTCAAAG

               601    -    651
UN15657        --> GCCATGCAGGCAAACAATGAGGAAGATGGATCAGAGGAAGAGGATGAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX899414       <-- GCCATGCAGGCAAACAATGAGGAAGATGGATCCGAGGAAGAGGATGAGGA
EV543183       <-- GCCATGCAGGCAAACAATGAGGAAGAGGGATCAGAGGAAGAGGATGAGGA
EV547059       <-- GCCATGCAGGCAAACAATGAGGAAGATGGATCAGCGGAAGAGGATGAGGA
EY911946       <-- GCCATGCAGGCAAACAATGAGGAAGATGGATCAGAGGAAGAGGATGAGGA
EX891916       <-- GCCATGCAGGCAAACAATGAGGAAGATGGATCAGAGGAAGAGGATGAGGA
EX908730       <-- GCCATGCAGGCAAACAATGAGGAAGATGGATCAGAGGAAGAGGATGAGGA
EX892087       <-- GCCATGCAGGCAAACAATGAGGAAGATGGATCAGAGGAAGAGGATGAGGA
EY896427       <-- GCCATGCAGGCAAACAATGAGGAAGATGGATCAGAGGAAGAGGATGAGGA
FD976941       <-- GCCATGCAGGCAAACAATGAGGAAGATGGATCAGAGGAAGAGGATGAGGA
EY911776       <-- GCCATGCAGGCAAACAATGAGGAAGATGGATCAGAGGAAGAGGATGAGGA
EY945549       <-- GCCATGCAGGCAAACAATGAGGAAGATGGATCAGAGGAAGAGGATGAGGA
EX894009       <-- GCCATGCAGGCAAACAATGAGGAAGATGGATCAGAGGAAGAGGATGAGGA
FD982720       <-- GCCATGCAGGCAAACAATGAGGAAGATGGATCAGAGGAAGAGGATGAGGA
FD944058       <-- GCCATGCAGGCAAACAATGAGGAAGATGGATCCGAGGAAGAGGATGAGGA
EV539385       --> GCCATGCAGGCAAACAATGAGGAAGAGGGATCAGAGGAAGAGGATGAGGA
EY916036       --> GCCATGC-GGCAAACAATGAGGAAGATGGATCAGAGGAAGAGGATGAG-A
EY916234       --> GCCAT.............................................
EV549985       --> GCCATGCAGGCAAACAATGAGGAAGATGGATCAGAGGAAGAGGATGAGGA
EV552072       --> GCCATGCAGGCAAACAATGAGGAAGATGGATCAGCGGAAGAGGATGAGGA
EX746604       --> GCCATGCAGGCAAACAATGAGGAAGATGGATCAGAGGAAGAGGATGAGGA
FD981163       --> GCCATGCAGGCAAACAATGAGGAAGATGGATCAGAGGAAGAGGATGAGGA
EY901021       --> GCCATGCAG-CAAACAATGAGGAAGATGGATCAGAGa.............
FD986468       --> GCCATGCAGGCAAACAATGAGGAAGATGGATCAGAGGAAGAGGATGAGGA
EX890509       --> GCCATG............................................
EX887879       --> GCCATGCAGGCAAACAATGAGGAAGATGGATCAGAGGAAGAGGATGAGGA
EX895243       --> GCCATGCAGGCAAACAATGAGGAAGATGGATCCGAGGAAGAGGATGAGGA
EX888079       --> GCCATGCAGGCAAACAATGAGGAAGATGGATCAGAGGAAGAGGATGAGGA

               651    -    701
UN15657        --> TGAACACGGGGAAACCCTTTGTGGTGCATGTGGAGACGGTGATGGTACTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX899414       <-- TGAACACGGGGAAACCCTTTGTGGTGCATGTGGAGACGGTGATGGTAATG  Raphanus sativus cv Early Scarlet Globe
EV543183       <-- TGAACACGGGGAAACCCTTTGTGGTGCATGTGGAGACGGTGATGGTAATG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV547059       <-- TGAACATGGGGAAACCCTTTGTGGTGCCTGTGGAGACGGTGATGGTACTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY911946       <-- TGAACACGGGGAAACCCTTTGTGGTGCCTGTGGAGACGGTGATGGTACTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX891916       <-- TGAACACGGGGAAACCCTTTGTGGTGCATGTGGAGACGGTGATGGTACTG  Raphanus sativus var. oleiformis
EX908730       <-- TGAACACGGGAAAACCCTTTGTGGTGCATGTGGAGACAGTGATGGTACTG  Raphanus sativus cv Rat-Tail Radish #3870
EX892087       <-- TGAACACGGGGAAACCCTTTGTGGTGCATGTGGAGACGGTGATGGTACTG  Raphanus sativus var. oleiformis
EY896427       <-- TGAACATGGGGAAACCCTTTGTGGTGCCTGTGGAGACGGTGATGGTACTG  Raphanus raphanistrum subsp. maritimus
FD976941       <-- TGAACATGGGGAAACCCTTTGTGGTGCCTGTGGAGACAGTGATGGTACTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY911776       <-- TGAACACGGGGAAACCCTTTGTGGTGCCTGTGGAGACGGTGATGGTAATG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY945549       <-- TGAACACGGGAAAACCCTTTGTGGTGCATGTGGAGACAGTGATGGTACTG  Raphanus sativus cv Rat-Tail Radish #3870
EX894009       <-- TGAACACGGGGAAACCCTTTGTGGTGCATGTGGAGACGGTGATGGTACTG  Raphanus sativus var. oleiformis
FD982720       <-- TGAACACGGGGAAACCCTTTGTGGTGCATGTGGAGACGGTGATGGTACTG  Raphanus raphanistrum subsp. landra
FD944058       <-- TGAACACGGGGAAACCCTTTGTGGTGCATGTGGAGACGGTGATGGTAATG  Raphanus sativus cv Early Scarlet Globe
EV539385       --> TGAACACGGGGAAACCCTTTGTGGTGCATGTGGAGACGGTGATGGTAATG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY916036       --> TGAACACGGG-AAACCCTTTGTGGTGCCTGTGGAGA..............  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916234       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV549985       --> TGAACACGGGGAAACCCTTTGTGGTGCCTGTGGAGACG-TGATGGTAATG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV552072       --> TGAACATGGGGAAACCCTTTGTGGTGCCTGTGGAGACG-TGATGGTACTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX746604       --> TGAACACGGGGAGACCCTTTGTGGTGCCTGTGGAGACG-TGATGGTAATG  Raphanus raphanistrum subsp. maritimus
FD981163       --> TGAACATGGGGAAACCCTTTGTGGTGCCTGTGGAGACAGTGATGGTACTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY901021       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD986468       --> TGAACACGGGGAAACCCTTTGTGGTGCATGTGGA................  Raphanus raphanistrum subsp. landra
EX890509       --> ..................................................  Raphanus sativus var. oleiformis
EX887879       --> TGAACACGGGGAAACCCTTTGTGGTGCATGTGGAGACGGTGATGGTACTG  Raphanus sativus var. oleiformis
EX895243       --> TGAACACGGGGAAACCCTTTGTGGTGCATGTGGAGACGGTGATGGTAATG  Raphanus sativus cv Early Scarlet Globe
EX888079       --> TGAACACGGGGAAACCCTTTGTGGTGCATGTGGAGACGGTGATGGTACTG  Raphanus sativus var. oleiformis

               701    -    751
UN15657        --> GTACTGATGATTTCTGGATCTGCTGTGACGTTTGTGAGGTATGGTTCCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX899414       <-- GTACTGATGATTTCTGGATCTGCTGTGACGTTTGTGAGGTGTGGTTCCAC  Raphanus sativus cv Early Scarlet Globe
EV543183       <-- GTACTGATGATTTCTGGATCTGCTGTGACGTTTGTGAGGTATGGTTCCAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV547059       <-- GTACTGATGATTTCTGGATCTGCTGTGACGTTTGTGAGGTATGGTTCCAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY911946       <-- GTACTGATGATTTCTGGATCTGCTGTGACGTTTGTGAGGTATGGTTCCAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX891916       <-- GTACTGATGATTTCTGGATCTGTTGTGACGTTTGTGAGGTGTGGTTCCAC  Raphanus sativus var. oleiformis
EX908730       <-- GTACTGATGATTTCTAGATCTGCTGTGACGTTTGTGAGGTGTGGTTCCAC  Raphanus sativus cv Rat-Tail Radish #3870
EX892087       <-- GTACTGATGATTTCTGGATCTGCTGTGACGTTTGTGAGGTGTGGTTCCAC  Raphanus sativus var. oleiformis
EY896427       <-- GTACTGATGATTTCTGGATCTGCTGTGACGTTTGTGAGGTATGGTTCCAC  Raphanus raphanistrum subsp. maritimus
FD976941       <-- GTACTGATGATTTCTGGATCTGCTGTGACGTTTGTGAGGTATGGTTCCAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY911776       <-- GTACTGATGATTTCTGGATCTGCTGTGACGTTTGTGAGGTATGGTTCCAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY945549       <-- GTACTGATGATTTCTAGATCTGCTGTGACGTTTGTGAGGTGTGGTTCCAC  Raphanus sativus cv Rat-Tail Radish #3870
EX894009       <-- GTACTGATGATTTCTGGATCTGCTGTGACGTTTGTGAGGTGTGGTTCCAC  Raphanus sativus var. oleiformis
FD982720       <-- GTACTGATGATTTCTGGATCTGCTGTGACGTTTGTGAGGTATGGTTCCAC  Raphanus raphanistrum subsp. landra
FD944058       <-- GTACTGATGATTTCTGGATCTGCTGTGACGTTTGTGAGGTGT----GGTG  Raphanus sativus cv Early Scarlet Globe
EV539385       --> GTACTGATGATTTCTGGATCTGCTGTGACGTTTGTGAGGTATGGTTCCAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY916036       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916234       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV549985       --> GTACTGATGATTTCTGGATCTGCTGCGACGTTTGTGAGGTATGGTTCCAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV552072       --> GTACTGATGATTTCTGGATCTGCTGTGACGTTTGTGAGGTATGGTTCCAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX746604       --> GTACTGATGATTTCTGGATCTGCTGTGACGTTTGTGAG-TATGGTTCCAC  Raphanus raphanistrum subsp. maritimus
FD981163       --> GTACTGATGATTTCTGGATCTGCTGTGACGTTTGTGAG-TATGGTTCCAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY901021       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD986468       --> ..................................................  Raphanus raphanistrum subsp. landra
EX890509       --> ..................................................  Raphanus sativus var. oleiformis
EX887879       --> GTACTGATGATTTCTGGATCTGTTGTGACGTTTGTGAGGTGTGGTTCCAC  Raphanus sativus var. oleiformis
EX895243       --> GTACTGATGATTTCTGGATCTGCTGTGACGTTTGTGAG-TGTGGTTCCAC  Raphanus sativus cv Early Scarlet Globe
EX888079       --> GTACTGATGATTTCTGGATCTGCTGTGACGTTTGTGAGGTGTGGTTCCAC  Raphanus sativus var. oleiformis

               751    -    801
UN15657        --> GGGAAGTGTGTGAAGATAACTCCAGCTAGAGCTGAGCATATCAAACAGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX899414       <-- GGGAAGTGTGTGAAGATAACTCCAGCTAGAGCTGAGCATATCAAACAGTA
EV543183       <-- GGGAAGTGTGTGAAGATAACTCCAGCTAGAGCTGAGCATATCAAACAGTA
EV547059       <-- GGGAAGTGTGTGAAGATAACTCCAGCTAGAGCTGAGCATATCAAACAGTA
EY911946       <-- GGGAAGTGTGTGAAGATAACTCCAGCTAGAGCTGAGCATATCAAACAGTA
EX891916       <-- GGGAAGTGTGTGAAGATAACTCCAGCTAGAGCTGAGCATATCAAACAGTA
EX908730       <-- GGGAAGTGTGTGAAGATAACTCCAGCTAGAGCTGAGCATATCAAACAGTA
EX892087       <-- GGGAAGTGTGTGAAGATAACTCCAGCTAGAGCTGAGCATATCAAACAGTA
EY896427       <-- GGGAAGTGTGTGAAGATAACTCCAGCTAGAGCTGAGCATATCAAACAGTA
FD976941       <-- GGGAAGTGTGTGAAGATAACTCCAGCTAGAGCTGAGCATATCAAACAGTA
EY911776       <-- GGGAAGTGTGTGAAGATAACTCCAGCTAGAGCTGAGCATATCAAACAGTA
EY945549       <-- GGGAAGTGTGTGAAGATAACTCCAGCTAGAGCTGAGCATATCAAACAGTA
EX894009       <-- GGGAAGTGTGTGAAGATAACTCCAGCTAGAGCTGAGCATATCAAACAGTA
FD982720       <-- GGGAAGTGTGTGAAGATAACTCCAGCTAGAGCTGAGCATATCAAACAGTA
FD944058       <-- GGGAAGTGTGTGAAGATAACTCCAGCTAGAGCTGAGCATATCAAACAGTA
EV539385       --> GGGAAGTGTGTGAAGATAACTCCAGCTAGAGCTGAGCATATCAAACAGTA
EY916036       --> ..................................................
EY916234       --> ..................................................
EV549985       --> GGGAAGTGTGTGAAGATAACTCCAGCTAGAGCTGAGCATATCAAACAGTA
EV552072       --> GGGAAGTGTGTGAAGATAACTCCAGCTAGAGCTGAGCATATCAA-CAGTA
EX746604       --> GGGAAGTGTGTGAAGATAACTCCAGCTAGAG...................
FD981163       --> GGGAAGTGTGTGAAGATA-CTCCAGCTAGAGCTGAGCATATCAA-CAGTA
EY901021       --> ..................................................
FD986468       --> ..................................................
EX890509       --> ..................................................
EX887879       --> GGGAAGTGTGTGAAGATAACTCCAGCTAGAGCTGAGCATATCAAACAGTA
EX895243       --> GGGAAGTGTGTGAAGATAACTCCAGCTAGAGCTGAGCATATCAA-CAGTA
EX888079       --> GGGAAGTGTGTGAAGATAACTCCAGCTAGAGCTGAGCATATCAAACAGTA

               801    -    851
UN15657        --> CAAGTGCCCTGCATGTAGCAACAAAAGAGCTCGATCTTAAATGT--TCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX899414       <-- CAAGTGCCCTGCTTGTAGCAACAAAAGAGCTCGATCTTAAATGT--TCTA  Raphanus sativus cv Early Scarlet Globe
EV543183       <-- CAAGTGCCCTGCATGTAGCAACAAAAGAGCTCGATCTTAAATGT--TCTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV547059       <-- CAAGTGCCCTGCATGTAGCAACAAAAGAGCTCGATCTTAAATGT--TCTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY911946       <-- CAAGTGCCCTGCATGTAGCAACAAAAGAGCTCGATCTTAAATGT--TCTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX891916       <-- CAAGTGCCCTGCATGTAGCAACAAAAGAGCACGATCTTAAATGT--TCTA  Raphanus sativus var. oleiformis
EX908730       <-- CAAGTGCCCTGCATGTAGCAACAAAAGAGCACGATCTTAAATGT--TCTA  Raphanus sativus cv Rat-Tail Radish #3870
EX892087       <-- CAAGTGCCCCGCATGTAGCAACAAAAGAGCACGATCTTAAATGT--TCTA  Raphanus sativus var. oleiformis
EY896427       <-- CAAGTGCCCTGCATGTAGCAACAAAAGAGCTCGATCTTAAATGT--TCTA  Raphanus raphanistrum subsp. maritimus
FD976941       <-- CAAGTGCCCTGCATGTAGCAACAAAAGAGCTCGATCTTAAATGT--TCTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY911776       <-- CAAGTGCCCTGCATGTAGCAACAAAAGAGCTCGATCTTAAATGTGTTCTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY945549       <-- CAAGTGCCCTGCATGTAGCAACAAAAGAGCACGATCTTAAATGT--TCTA  Raphanus sativus cv Rat-Tail Radish #3870
EX894009       <-- CAAGTGCCCTGCATGTAGCAACAAAAGAGCACGATCTTAAATGT--TCTA  Raphanus sativus var. oleiformis
FD982720       <-- CAAGTGCCCTGCATGTAGCAACAAAAGAGCACGATCTTAAATGT--TCTA  Raphanus raphanistrum subsp. landra
FD944058       <-- CAAGTGCCCTGCTTGTAGCAACAAAAGAGCTCGATCTTAAATGT--TCTA  Raphanus sativus cv Early Scarlet Globe
EV539385       --> CAAGTGCCCTGCATGTAGCAACAAA-GAGCTCGATCTTAAATGT--TCTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY916036       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916234       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV549985       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV552072       --> CAAGTGCCCTGCATGTAGCA-CAAAAGAGCTCGATC..............  Raphanus raphanistrum subsp. raphanistrum (NY)
EX746604       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD981163       --> CA-GTGCCCTGCATGTAGCAAAAAA.........................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY901021       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD986468       --> ..................................................  Raphanus raphanistrum subsp. landra
EX890509       --> ..................................................  Raphanus sativus var. oleiformis
EX887879       --> CAAGTGCCCTGCATGTAGCAACAAAAGAGCACGATCTTAAATGT--TCTA  Raphanus sativus var. oleiformis
EX895243       --> C.................................................  Raphanus sativus cv Early Scarlet Globe
EX888079       --> CAAGTGCCCCGCATGTAGCAACAAAAGAGCACGATCTTAAATGT--TCTA  Raphanus sativus var. oleiformis

               851    -    901
UN15657        --> TTTGTAGAGAGTGTAGCCTGTAGTAAGAAACTCTTACTACCCTCATCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX899414       <-- TT-GTAGAGAGTGTAGCCTGTAGTAAGAAACTCTTACTACCCTCATCTTT  Raphanus sativus cv Early Scarlet Globe
EV543183       <-- TTTGTAGAGAGTGTAGCCTGTAGTAAGAAACTCTTACTACCCTCATCTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV547059       <-- TT-GTAGAGAGTGTAGCCTGTAGTAAGAAACTCTTACTACCCTCATCTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY911946       <-- TTTGTAGAGAGTGTAGCCTGTAGTAAGAAACTCTTACTACCCTCATCTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX891916       <-- TTTGTAGAGAGTATAGCCTGTAGTAAGAAACTCTTACTACCCTCATCTTT  Raphanus sativus var. oleiformis
EX908730       <-- TTTGTAGAGAGTATAGCCTGTAGTAAGAAACTCTTACTACCCTCATCTTT  Raphanus sativus cv Rat-Tail Radish #3870
EX892087       <-- TTTGTAGAGAGTATAGCCTGTAGTAAGAAACTCTTACTACCCTCATCTTT  Raphanus sativus var. oleiformis
EY896427       <-- TTTGTAGAGAGTGTAGCCTGTAGTAAGAAACTCTTACTACCCTCATCTTT  Raphanus raphanistrum subsp. maritimus
FD976941       <-- TTT-TAGAGAGTGTAGCCTGTAGTAAGAAACTCTTACTACCCTCATCTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY911776       <-- -TTGTAGAGAGTGTAGCCTGTGGTAAGAAACTCTTACTACCCTCATCTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY945549       <-- TTTGTAGAGAGTATAGCCTGTAGTAAGAAACTCTTACTACCCTCATCTTT  Raphanus sativus cv Rat-Tail Radish #3870
EX894009       <-- TTTGTAGAGAGTATAGCCTGTAGTAAGAAACTCTTACTACCCTCATCTTT  Raphanus sativus var. oleiformis
FD982720       <-- TTTGTAGAGAGTGTAGCCTGTAGTAAGAAACTCTTACTACCCTCATCTTT  Raphanus raphanistrum subsp. landra
FD944058       <-- TT-ATAGAGAGTGTAGCCTGTAGTAAGAAACTCTTACTACCCTCATCTTT  Raphanus sativus cv Early Scarlet Globe
EV539385       --> TTTGTAGAGAGTGTAGCCTGTAGTAAGAAACTCTTACTACCCTCATCTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY916036       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916234       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV549985       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV552072       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX746604       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD981163       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY901021       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD986468       --> ..................................................  Raphanus raphanistrum subsp. landra
EX890509       --> ..................................................  Raphanus sativus var. oleiformis
EX887879       --> TTTGT.............................................  Raphanus sativus var. oleiformis
EX895243       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX888079       --> TTTGTAGAGAGTATAGCCTGTAGTAAGAAACTCTTACTACCCTCATCTTT  Raphanus sativus var. oleiformis

               901    -    951
UN15657        --> ATTTGGCTAGTTCTTAGCTCTTTCTATCCCACCATAACAACTTAGCCCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX899414       <-- ATTTGGCTAGTTCTTAGCTCTTTCTATCC-ACCATAACAACTTAGCCCCT  Raphanus sativus cv Early Scarlet Globe
EV543183       <-- ATTTGGCTAGTTCTTAGCTCTTTCTATCC-ACCATAACAACTTAGCCCCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV547059       <-- ATTTGGCTAGTTCTTAGCTCTTTCTATCCCACCATAACAACTTAGCCCCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY911946       <-- ATTTGGCTAGTTCTTAGCTCTTTCTATCCCACCATAACAACTTAGCCCCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX891916       <-- ATTTGGCTAGTTCTTAGCTCTTTCTATCCCACCATAACAACTTAGCCCCT  Raphanus sativus var. oleiformis
EX908730       <-- ATTTGGCTAGTTCTTAGCTCTTTCTATCCCACCATAACAACTTAGCCCCT  Raphanus sativus cv Rat-Tail Radish #3870
EX892087       <-- ATTTGGCTAGTTCTTAGCTCTTTCTATCCCCCCATAACAACTTAGCCCCT  Raphanus sativus var. oleiformis
EY896427       <-- ATTTGGCTAGTTCTTAGCTCTTTCTATCCCACCATAACAACTTAGCCCCT  Raphanus raphanistrum subsp. maritimus
FD976941       <-- ATTTGGCTAGTTCTTAGCTCTTTCTATCCCACCATAACAACTTAGCCCCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY911776       <-- ATTTGGCTAGT-CTTAGCTCTTTCTATCC-ACCATAACAACTTAGCCTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY945549       <-- ATTTGGCTAGTTCTTAGCTCTTTCTATCCCACCATAACAACTTAGCCCCT  Raphanus sativus cv Rat-Tail Radish #3870
EX894009       <-- ATTTGGCTAGTTCTTAGCTCTTTCTATCCCCCCATAACAACTTAGCCCCT  Raphanus sativus var. oleiformis
FD982720       <-- ATTTGGCTAGTTTTTAGCTCTTTCTATCCCACCATAACAACTTAGCCCCT  Raphanus raphanistrum subsp. landra
FD944058       <-- ATTTGGCTAGTTCTTAGCTCTTTCTATCC-ACCATAACAACTTAGCCCCT  Raphanus sativus cv Early Scarlet Globe
EV539385       --> ATTTGGC...........................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY916036       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916234       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV549985       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV552072       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX746604       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD981163       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY901021       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD986468       --> ..................................................  Raphanus raphanistrum subsp. landra
EX890509       --> ..................................................  Raphanus sativus var. oleiformis
EX887879       --> ..................................................  Raphanus sativus var. oleiformis
EX895243       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX888079       --> ATTTGGCTAGTTCTTAGCTCTTTCTATCCCACCATAACAACTTAGCCCCT  Raphanus sativus var. oleiformis

               951    -   1001
UN15657        --> ATTTCTCATTTGAATTTGCTGTATAATTAATTGGTTTGTTTCCAGAAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX899414       <-- ATTTCTCATTTGAATTTGCTGTATAATTAATTGGTTTGTTTCCAG.....
EV543183       <-- ATTTCTCATTTGAATTTGCTGTATAATTAATTGGTTTGTTTCCAGAAACA
EV547059       <-- ATTTCTCATTTGAATTTGCTGTATAATT......................
EY911946       <-- ATTTCTCATTTGAATTTGCTGTATAATTAATTGGTTTGTTTCCAG.....
EX891916       <-- ATTTCTCATTTGAATTTGCTGTATAATT......................
EX908730       <-- ATTTCTCATTTGAATTTGCTGTATAATTAATTGGTTTGTTTCCAG.....
EX892087       <-- ATTTCTCATTTGAATTTGCTGTATAATTAATTGGTTTGTTTC........
EY896427       <-- ATTTCTCATTTGAATTTGCTGTATAATTAATTGGTTTGTTTCCAG.....
FD976941       <-- ATTTCTCATTTGAATTTGCTGTATAATTAATTGGTTTGTTTCCAGAAACA
EY911776       <-- ATTTCTCATTTGAATTTGCTGTATAATTAATTGGTTTGTTTCCAGAAACA
EY945549       <-- ATTTCTCATTTGAATTTGCTGTATAATTAATTGGTTTGTTTCCAG.....
EX894009       <-- ATTTCTCATTTGAATTTGCTGTATAATTAATTGGTTTGTTTCCAGAAACA
FD982720       <-- ATTTCTCATTTGAATTTGCTGTATAATTAATTGGTTTGTTTCCAGAAACA
FD944058       <-- ..................................................
EV539385       --> ..................................................
EY916036       --> ..................................................
EY916234       --> ..................................................
EV549985       --> ..................................................
EV552072       --> ..................................................
EX746604       --> ..................................................
FD981163       --> ..................................................
EY901021       --> ..................................................
FD986468       --> ..................................................
EX890509       --> ..................................................
EX887879       --> ..................................................
EX895243       --> ..................................................
EX888079       --> ATTTCTCATTTGAATTTGCTGTATAATTAAT...................

               1001   -   1051
UN15657        --> TATTTTCCAAGTCCATTAATCAAACTGCTCATATGCAGTTAGCTTTTAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX899414       <-- ..................................................
EV543183       <-- TATTT-CCAAGTCCATTAATCAAACTTCTCATATGCAGc...........
EV547059       <-- ..................................................
EY911946       <-- ..................................................
EX891916       <-- ..................................................
EX908730       <-- ..................................................
EX892087       <-- ..................................................
EY896427       <-- ..................................................
FD976941       <-- TATTTTCCAAGTCCATTAATCAAACTGCTCATATGCAGTTAGCTTTTAAA
EY911776       <-- TATTTTCCAAGTCCATTAATCAAACTGCTCATATGCAGCTAGCTTTTAAA
EY945549       <-- ..................................................
EX894009       <-- TA................................................
FD982720       <-- TATTTTCCAGGTCCATTAATCAAACTGCTCATATGCAGTTAGCTTTTAAA
FD944058       <-- ..................................................
EV539385       --> ..................................................
EY916036       --> ..................................................
EY916234       --> ..................................................
EV549985       --> ..................................................
EV552072       --> ..................................................
EX746604       --> ..................................................
FD981163       --> ..................................................
EY901021       --> ..................................................
FD986468       --> ..................................................
EX890509       --> ..................................................
EX887879       --> ..................................................
EX895243       --> ..................................................
EX888079       --> ..................................................

               1051   -   1101
UN15657        --> ACCATCAGGACAGACGGTTTTGAGCACCCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX899414       <-- ...............................
EV543183       <-- ...............................
EV547059       <-- ...............................
EY911946       <-- ...............................
EX891916       <-- ...............................
EX908730       <-- ...............................
EX892087       <-- ...............................
EY896427       <-- ...............................
FD976941       <-- ACCATC.........................
EY911776       <-- ACCAcc.........................
EY945549       <-- ...............................
EX894009       <-- ...............................
FD982720       <-- ACCATCAGGACAGACGGTTTTGAGCACCCGT
FD944058       <-- ...............................
EV539385       --> ...............................
EY916036       --> ...............................
EY916234       --> ...............................
EV549985       --> ...............................
EV552072       --> ...............................
EX746604       --> ...............................
FD981163       --> ...............................
EY901021       --> ...............................
FD986468       --> ...............................
EX890509       --> ...............................
EX887879       --> ...............................
EX895243       --> ...............................
EX888079       --> ...............................