1      -     51
UN15679        --> GGCAATCTGTGTGTGTGTGTGTATTTGGGTGGAAATCGAGAAAAAATGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538822       <-- GGCAATCTGTGTGTGTGTGTGTATTTGGGTGAAAATCGAGAAAAAATGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV532256       <-- ..........................GGGTGGAAATCGAAAAAAAATGAG  Raphanus raphanistrum subsp. maritimus
EX891284       <-- ..................................................  Raphanus sativus var. oleiformis
EY928861       <-- ..................................................  Raphanus sativus var. oleiformis
FD539755       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD553913       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD944636       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD542864       --> GGCAATCTGTGTGTGTGTGTGTATTTGGGTGAAAATCGAGAAAAAATGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY937759       --> .agggaatcTGTGT-TGTGTGT-TTTGGGTGGAAATCGA-AAAAAATGAG  Raphanus sativus cv Early Scarlet Globe
FD544071       --> ...........gggGTGTGTGTGTTTGGGTGAAAATCGAGAAAAAATGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV528200       --> .......................TTTGGGTGGAAATCGAAAAAAAATGAG  Raphanus raphanistrum subsp. maritimus
EV536640       --> .......................TTTGGGTGAAAATCGAGAAAAAATGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY899474       --> ..........................GGGTGGAAATCGAAAAAAAATGAG  Raphanus raphanistrum subsp. maritimus
EW724658       --> ...........................GGTGGAAATCGA-AAAAAATGAG  Raphanus sativus cv Early Scarlet Globe
FD557897       --> ....................................ggaaAAAAAATGAG  Raphanus raphanistrum subsp. landra
EX887031       --> ..................................................  Raphanus sativus var. oleiformis
EY933372       --> ..................................................  Raphanus sativus var. oleiformis
EX773679       --> ..................................................  Raphanus raphanistrum subsp. landra
EV524934       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX748289       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               51     -    101
UN15679        --> CGGAGCAGGAAAGAAAGTAGCGGATGTGGCATTCAAAGCGTCGAGGACTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538822       <-- CGGAGCAGGAAAGAAAGTAGCGGATGTGGCATTCAAAGCGTCGAGGACTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV532256       <-- CGGAGCAGGAAAGAAAGTAGCGGACGTGGCATTCAAAGCGTCGAGGACTA  Raphanus raphanistrum subsp. maritimus
EX891284       <-- .GGAGCAGGAAAGAAAGTAGCGGATGTGGCATTCAAAGCGTCGAGGACTA  Raphanus sativus var. oleiformis
EY928861       <-- ......AGGAAAGAAAGTAGCGGATGTGGCATTCAAAGCGTCGAGGACTA  Raphanus sativus var. oleiformis
FD539755       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD553913       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD944636       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD542864       --> CGGAGCAGGAAAGAAAGTAGCGGATGTGGCATTCAAAGCGTCGAGGACTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY937759       --> CGGAGCAGGAAAGAAAGTAGCGGATGTGGCATTCAAAGCGTCGAGGACTA  Raphanus sativus cv Early Scarlet Globe
FD544071       --> CGGAGCAGGAAAGAAAGTAGCGGATGTGGCATTCAAAGCGTCGAGGACTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV528200       --> CGGAGCAGGAAAGAAAGTAGCGGACGTGGCATTCAAAGCGTCGAGGACTA  Raphanus raphanistrum subsp. maritimus
EV536640       --> CGGAGCAGGAAAGAAAGTAGCGGATGTGGCATTCAAAGCGTCGAGGACTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY899474       --> CGGAGCAGGAAAGAAAGTAGCGGACGTGGCATTCAAAGCGTCGAGGACTA  Raphanus raphanistrum subsp. maritimus
EW724658       --> CGGAGCAGGAAAGAAAGTAGCGGATGTGGCATTCAAAGCGTCGAGGACTA  Raphanus sativus cv Early Scarlet Globe
FD557897       --> CGGAGCAGGAAAGAAAGTAGCGGACGTGGCATTCAAAGCGTCGAGGACTA  Raphanus raphanistrum subsp. landra
EX887031       --> .GGAGCAGGAAAGAAAGTAGCGGATGTGGCATTCAAAGCGTCGAGGACTA  Raphanus sativus var. oleiformis
EY933372       --> ..ggGCAGGAAAGAAAGTAGCGGATGTGGCATTCAAAGCGTCGAGGACTA  Raphanus sativus var. oleiformis
EX773679       --> ..................................................  Raphanus raphanistrum subsp. landra
EV524934       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX748289       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               101    -    151
UN15679        --> TAGACTGGGAAGGGATGGCTAAGGTCCTTGTCACCGACGAGGCTCGCAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538822       <-- TAGACTGGGAAGGGATGGCAAAGGTCCTTGTCACCGACGAGGCTCGCAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV532256       <-- TAGACTGGGAAGGAATGGCTAAGGTCCTTGTCACCGACGAGGCTCGCAGA  Raphanus raphanistrum subsp. maritimus
EX891284       <-- TAGATTGGGAAGGGATGGCTAAGGTCCTTGTCACCGACGAGGCTCGCAGA  Raphanus sativus var. oleiformis
EY928861       <-- TAGATTGGGAAGGGATGGCTAAGGTCCTTGTCACCGACGAGGCTCGCAGA  Raphanus sativus var. oleiformis
FD539755       <-- ................................ACCGACGAGGCTCGCAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD553913       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD944636       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD542864       --> TAGACTGGGAAGGGATGGCAAAGGTCCTTGTCACCGACGAGGCTCGCAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY937759       --> TAGACTGGGAAGGAATGGCTAAGGTCCTTGTCACCGACGAGGCTCGCAGA  Raphanus sativus cv Early Scarlet Globe
FD544071       --> TAGACTGGGAAGGGATGGCAAAGGTCCTTGTCACCGACGAGGCTCGCAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV528200       --> TAGACTGGGAAGGAATGGCTAAGGTCCTTGTCACCGACGAGGCTCGCAGA  Raphanus raphanistrum subsp. maritimus
EV536640       --> TAGACTGGGAAGGGATGGCAAAGGTCCTTGTCACCGACGAGGCTCGCAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY899474       --> TATACTGGGAAGGAATGGCTAAGGTCCTTGTCACCGACGAGGCTCGCAGA  Raphanus raphanistrum subsp. maritimus
EW724658       --> TAGACTGGGAAGGAATGGCTAAGGTCCTTGTCACCGACGAGGCTCGCAGA  Raphanus sativus cv Early Scarlet Globe
FD557897       --> TAGACTGGGAAGGAATGGCTAAGGTCCTTGTCACCGACGAGGCTCGCAGA  Raphanus raphanistrum subsp. landra
EX887031       --> TAGATTGGGAAGGGATGGCTAAGGTCCTTGTCACCGACGAGGCTCGCAGA  Raphanus sativus var. oleiformis
EY933372       --> TAGATTGGGAAGGGATGGCTAAGGTCCTTGTCACCGACGAGGCTCGCAGA  Raphanus sativus var. oleiformis
EX773679       --> ..................................................  Raphanus raphanistrum subsp. landra
EV524934       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX748289       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               151    -    201
UN15679        --> GAGTTCTCCAACCTCCGTCGCGCTTTCGACGAGGTCAACACTCAGCTCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538822       <-- GAGTTCTCTAACCTCCGTCGCGCTTTCGACGAGGTCAACACCCAGCTCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV532256       <-- GAGTTCTCCAACCTCCGTCGCGCTTTCGACGAGGTCAACACTCAGCTCCA  Raphanus raphanistrum subsp. maritimus
EX891284       <-- GAGTTCTCCAACCTCCGTCGCGCTTTCGACGAGGTCAACACTCAGCTCCA  Raphanus sativus var. oleiformis
EY928861       <-- GAGTTCTCCAACCTCCGTCGCGCTTTCGACGAGGTCAACACTCAGCTCCA  Raphanus sativus var. oleiformis
FD539755       <-- GAGTTCTCTAACCTCCGTCGCGCTTTCGACGAGGTCAACACCCAGCTCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD553913       <-- .........AACCTCCGTCGCGCTTTCGACGAGGTCAACACCCAGCTCCA  Raphanus raphanistrum subsp. landra
FD944636       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD542864       --> GAGTTCTCTAACCTCCGTCGCGCTTTCGACGAGGTCAACACCCAGCTCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY937759       --> GAGTTCTCCAACCTCCGTCGCGCTTTCGACGAGGTCAACACTCAGCTCCA  Raphanus sativus cv Early Scarlet Globe
FD544071       --> GAGTTCTCTAACCTCCGTCGCGCTTTCGACGAGGTCAACACCCAGCTCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV528200       --> GAGTTCTCCAACCTCCGTCGCGCTTTCGACGAGGTCAACACTCAGCTCCA  Raphanus raphanistrum subsp. maritimus
EV536640       --> GAGTTCTCTAACCTCCGTCGCGCTTTCGACGAGGTCAACACCCAGCTCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY899474       --> GAGTTCTCCAACCTCCGTCGCGCTTTCGACGAGGTCAACACTCAGCTCCA  Raphanus raphanistrum subsp. maritimus
EW724658       --> GAGTTCTCCAACCTCCGTCGCGCTTTCGACGAGGTCAACACTCAGCTCCA  Raphanus sativus cv Early Scarlet Globe
FD557897       --> GAGTTCTCTAACCTCCGTCGCGCTTTCGACGAGGTCAACACCCAGCTCCA  Raphanus raphanistrum subsp. landra
EX887031       --> GAGTTCTCCAACCTCCGTCGCGCTTTCGACGAGGTCAACACTCAGCTCCA  Raphanus sativus var. oleiformis
EY933372       --> GAGTTCTCCAACCTCCGTCGCGCTTTCGACGAGGTCAACACTCAGCTCCA  Raphanus sativus var. oleiformis
EX773679       --> ......tctAACCTCCGTCGCGCTTTCGACGAGGTCAACACCCAGCTCCA  Raphanus raphanistrum subsp. landra
EV524934       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX748289       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               201    -    251
UN15679        --> AACCAAGTTCAGCCAGGAGCCTGAACCTATTGATTGGGATTTCTACAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538822       <-- AACCAAGTTCAGCCAGGAGCCTGAACCCATTGATTGGGATTTCTACAGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV532256       <-- AACCAAGTTCAGCCAGGAGCCTGAACCTATTGATTGGGATTTCTACAGAA  Raphanus raphanistrum subsp. maritimus
EX891284       <-- AACCAAGTTCAGCCAGGAGCCTGAACCTATTGATTGGGATTTCTACAGAA  Raphanus sativus var. oleiformis
EY928861       <-- AACCAAGTTCAGCCAGGAGCCTGAACCTATTGATTGGGATTTCTACAGAA  Raphanus sativus var. oleiformis
FD539755       <-- AACCAAGTTCAGCCAGGAGCCTGAACCCATTGATTGGGATTTCTACAGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD553913       <-- AACCAAGTTCAGCCAGGAGCCTGAACCTATTGATTGGGATTTCTACAGAA  Raphanus raphanistrum subsp. landra
FD944636       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD542864       --> AACCAAGTTCAGCCAGGAGCCTGAACCCATTGATTGGGATTTCTACAGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY937759       --> AACCAAGTTCAGCCAGGAGCCTGAACCTATTGATTGGGATTTCTACAGAA  Raphanus sativus cv Early Scarlet Globe
FD544071       --> AACCAAGTTCAGCCAGGAGCCTGAACCCATTGATTGGGATTTCTACAGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV528200       --> AACCAAGTTCAGCCAGGAGCCTGAACCTATTGATTGGGATTTCTACAGAA  Raphanus raphanistrum subsp. maritimus
EV536640       --> AACCAAGTTCAGCCAGGAGCCTGAACCCATTGATTGGGATTTCTACAGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY899474       --> AACCAAGTTCAGCCAGGAGCCTGAACCTATTGATTGGGATTTCTACAGAA  Raphanus raphanistrum subsp. maritimus
EW724658       --> AACCAAGTTCAGCCAGGAGCCTGAACCTATTGATTGGGATTTCTACAGAA  Raphanus sativus cv Early Scarlet Globe
FD557897       --> AACCAAGTTCAGCCAGGAGCCTGAACCTATTGATTGGGATTTCTACAGAA  Raphanus raphanistrum subsp. landra
EX887031       --> AACCAAGTTCAGCCAGGAGCCTGAACCTATTGATTGGGATTTCTACAGAA  Raphanus sativus var. oleiformis
EY933372       --> AACCAAGTTCAGCCAGGAGCCTGAACCTATTGATTGGGATTTCTACAGAA  Raphanus sativus var. oleiformis
EX773679       --> AACCAAGTTCAGCCAGGAGCCTGAACCTATTGATTGGGATTTCTACAGAA  Raphanus raphanistrum subsp. landra
EV524934       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX748289       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               251    -    301
UN15679        --> AGGGTATTGGATCTGGCATTGTTGACATGTACAAGGAAGCTTATGACAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538822       <-- AGGGTATTGGATCTGGCATCGTTGACATGTACAAGGAAGCTTATGACAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV532256       <-- AGGGTATTGGATCTGGCATTGTTGACATGTACAAGGAAGCTTATGACAGC  Raphanus raphanistrum subsp. maritimus
EX891284       <-- AGGGTATTGGATCTGGCATTGTTGACATGTACAAGGAAGCTTATGACAGC  Raphanus sativus var. oleiformis
EY928861       <-- AGGGTATTGGATCTGGCATTGTTGACATGTACAAGGAAGCTTATGACAGC  Raphanus sativus var. oleiformis
FD539755       <-- AGGGTATTGGATCTGGCATCGTTGACATGTACAAGGAAGCTTATGACAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD553913       <-- AGGGTATTGGATCTGGCATTGTTGACATGTACAAGGAAGCTTATGACAGC  Raphanus raphanistrum subsp. landra
FD944636       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD542864       --> AGGGTATTGGATCTGGCATCGTTGACATGTACAAGGAAGCTTATGACAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY937759       --> AGGGTATTGGATCTGGCATTGTTGACATGTACAAGGAAGCTTATGACAGC  Raphanus sativus cv Early Scarlet Globe
FD544071       --> AGGGTATTGGATCTGGCATCGTTGACATGTACAAGGAAGCTTATGACAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV528200       --> AGGGTATTGGATCTGGCATTGTTGACATGTACAAGGAAGCTTATGACAGC  Raphanus raphanistrum subsp. maritimus
EV536640       --> AGGGTATTGGATCTGGCATCGTTGACATGTACAAGGAAGCTTATGACAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY899474       --> AGGGTATTGGATCTGGCATTGTTGACATGTACAAGGAAGCTTATGACAGC  Raphanus raphanistrum subsp. maritimus
EW724658       --> AGGGTATTGGATCTGGCATTGTTGACATGTACAAGGAAGCTTATGACAGC  Raphanus sativus cv Early Scarlet Globe
FD557897       --> AGGGTATTGGATCTGGCATTGTTGACATGTACAAGGAAGCTTATGACAGC  Raphanus raphanistrum subsp. landra
EX887031       --> AGGGTATTGGATCTGGCATTGTTGACATGTACAAGGAAGCTTATGACAGC  Raphanus sativus var. oleiformis
EY933372       --> AGGGTATTGGATCTGGCATTGTTGACATGTACAAGGAAGCTTATGACAGC  Raphanus sativus var. oleiformis
EX773679       --> AGGGTATTGGATCTGGCATTGTTGACATGTACAAGGAAGCTTATGACAGC  Raphanus raphanistrum subsp. landra
EV524934       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX748289       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               301    -    351
UN15679        --> GTTGAGATTCCCAAGTACGTGGACAATGTTACCCCTGAATACAAGCCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538822       <-- GTTGAGATTCCCAAGTACGTGGACAATGTTACCCCTGAATACAAGCCAAA
EV532256       <-- GTTGAGAT-CCCAAGTACGTGGACAATGTTACCCCTGAATACAAGCCAAA
EX891284       <-- GTTGAGATTCCCAAGTACGTGGACAATGTTACCCCTGAATACAAGCCAAA
EY928861       <-- GTTGAGATTCCCAAGTACGTGGACAATGTTACCCCTGAATACAAGCCAAA
FD539755       <-- GTTGAGATTCCCAAGTACGTGGACAATGTTACCCCTGAATACAAGCCAAA
FD553913       <-- GTTGAGATTCCCAAGTACGTGGACAATGTTACCCCTGAATACAAGCCAAA
FD944636       <-- ..................................................
FD542864       --> GTTGAGATTCCCAAGTACGTGGACAATGTTACCCCTGAATACAAGCCAAA
EY937759       --> GTTGAGATTCCCAAGTACGTGGACAATGTTACCCCTGAATACAAGCCAAA
FD544071       --> GTTGAGATTCCCAAGTACGTGGACAATGTTACCCCTGAATACAAGCCAAA
EV528200       --> GTTGAGAT-CCCAAGTACGTGGACAATGTTACCCCTGAATACAAGCCAAA
EV536640       --> GTTGAGATTCCCAAGTACGTGGACAATGTTACCCCTGAATACAAGCCAAA
EY899474       --> GTTGAGATTCCCAAGTACGTGGACAATGTTACCCCTGAATACAAGCCAAA
EW724658       --> GTTGAGATTCCCAAGTACGTGGACAATGTTACCCCTGAATACAAGCCAAA
FD557897       --> GTTGAGATTCCCAAGTACGTGGACAATGTTACCCCTGAATACAAGCCAAA
EX887031       --> GTTGAGATTCCCAAGTACGTGGACAATGTTACCCCTGAATACAAGCCAAA
EY933372       --> GTTGAGATTCCCAAGTACGTGGACAATGTTACCCCTGAATACAAGCCAAA
EX773679       --> GT................................................
EV524934       --> ..................................................
EX748289       --> ..................................................

               351    -    401
UN15679        --> ATTTGATGCTTTGTTGGTGGAACTGAAAGAAGCAGAACAGAAGTCGCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538822       <-- ATTTGATGCTTTGTTGGTGGAACTGAAAGAAGCAGAACAGAAGTCGCTCA
EV532256       <-- ATTTGATGCTTTGTTGGTGGAACTGAAAGAAGCAGAGCAGAAGTCGCTCA
EX891284       <-- ATTTGATGCTTTGTTGGTGGAACTGAAAGAAGCAGAACAGAAGTCGCTCA
EY928861       <-- ATTTGATGCTTTGTTGGTGGAACTGAAAGAAGCAGAACAGAAGTCGCTCA
FD539755       <-- ATTTGATGCTTTGTTGGTGGAACTGAAAGAAGCAGAACAGAAGTCGCTCA
FD553913       <-- ATTTGATGCTTTGTTGGTGGAACTGAAAGAAGCAGAACAGAAGTCGCTCA
FD944636       <-- ..................................................
FD542864       --> ATTTGATGCTTTGTTGGTGGAACTGAAAGAAGCAGAACAGAAGTCGCTCA
EY937759       --> ATTTGATGCTTTGTTGGTGGAACTGAAAGAAGCAGAACAGAAGTCGCTCA
FD544071       --> ATTTGATGCTTTGTTGGTGGAACTGAAAGAAGCAGAACAGAAGTCGCTCA
EV528200       --> ATTTGATGCTTTGTTGGTGGAACTGAAAGAAGCAGAGCAGAAGTCGCTCA
EV536640       --> ATTTGATGCTTTGTTGGTGGAACTGAAAGAAGCAGAACAGAAGTCGCTCA
EY899474       --> ATTTGATGCTTTGTTGGTGGAACTGAAAGAAGCAGAACAGAAGTCGCTCA
EW724658       --> ATTTGATGCTTTGTTGGTGGAACTGAAAGAAGCAGAACAGAAGTCGCTCA
FD557897       --> ATTTGATGCTTTGTTGGTGGAACTGAAAGAAGCAGAACAGAAGTCGCTCA
EX887031       --> ATTTGATGCTTTGTTGGTGGAACTGAAAGAAGCAGAACAGAAGTCGCTCA
EY933372       --> ATTTGATGCTTTGTTGGTGGAACTGAAAGAAGCAGAACAGAAGTCGCTCA
EX773679       --> ..................................................
EV524934       --> ..................................................
EX748289       --> ..................................................

               401    -    451
UN15679        --> AGGAGTCTGAACGGCTGGAGAAAGAAATTATTGATGTCCAAGAGATAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538822       <-- AGGAGTCTGAACGGCTGGAGAAAGAAATTATTGATGTCCAAGAGATAAGC
EV532256       <-- AGGAGTCTGAACGGCTGGAGAAAGAAATTATTGATGTCCAAGAGATAATC
EX891284       <-- AGGAGTCTGAACGGCTGGAGAAAGAAATTATTGATGTCCAAGAGATAAGC
EY928861       <-- AGGAGTCTGAACGGCTGGAGAAAGAAATTATTGATGTCCAAGAGATAAGC
FD539755       <-- AGGAGTCTGAACGGCTGGAGAAAGAAATTATTGATGTCCAAGAGATAAGC
FD553913       <-- AGGAGTCTGAACGGCTGGAGAAAGAAATTATTGATGTCCAAGAGATAAGC
FD944636       <-- ..................................................
FD542864       --> AGGAGTCTGAACGGCTGGAGAAAGAAATTATTGATGTCCAAGAGATAAGC
EY937759       --> AGGAGTCTGAACGGCTGGAGAAAGAAATTATTGATGTCCAAGAGATAAGC
FD544071       --> AGGAGTCTGAACGGCTGGAGAAAGAAATTATTGATGTCCAAGAGATAAGC
EV528200       --> AGGAGTCTGAACGGCTGGAGAAAGAAATTATTGATGTCCAAGAGATAATC
EV536640       --> AGGAGTCTGAACGGCTGGAGAAAGAAATTATTGATGTCCAAGAGATAAGC
EY899474       --> AGGAGTCTGAACGGCTGGAGAAAGAAATTATTGATGTCCAAGAGATAAGC
EW724658       --> AGGAGTCTGAACGGCTGGAGAAAGAAATTATTGATGTCCAAGAGATAAGC
FD557897       --> AGGAGTCTGAACGGCTGGAGAAAGAAATTATTGATGTCCAAGAGATAAGC
EX887031       --> AGGAGTCTGAACGGCTGGAGAAAGAAATTATTGATGTCCAAGAGATAAGC
EY933372       --> AGGAGTCTGAACGGCTGGAGAAAGAAATTATTGATGTCCAAGAGATAAGC
EX773679       --> ..................................................
EV524934       --> ..................................................
EX748289       --> ..................................................

               451    -    501
UN15679        --> AAAAAGCTCAGCACGATGACTGCAGATGAGTACTTTGAGAAGCACCCTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538822       <-- AAAAAGCTCAGCACGATGACTGCAGATGAGTACTTTGAGAAGCACCCTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV532256       <-- AAAAAGCTCAGCACGATGACTACAGATGAGTACTTTGAGAAGCACCCTGA  Raphanus raphanistrum subsp. maritimus
EX891284       <-- AAAAAGCTCAGCACGATGACTGCAGATGAGTACTTTGAGAAGCACCCAGA  Raphanus sativus var. oleiformis
EY928861       <-- AAAAAGCTCAGCACGATGACTGCAGATGAGTACTTTGAGAAGCACCCAGA  Raphanus sativus var. oleiformis
FD539755       <-- AAAAAGCTCAGCACGATGACTGCAGATGAGTACTTTGAGAAGCACCCTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD553913       <-- AAAAAGCTCAGCACGATGACTGCAGATGAGTACTTTGAGAAGCACCCTGA  Raphanus raphanistrum subsp. landra
FD944636       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD542864       --> AAAAAGCTCAGCACGATGACTGCAGATGAGTACTTTGAGAAGCACCCTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY937759       --> AAAAAGCTCAGCACGATGACTGCAGATGAGTACTTTGAGAAGCACCCAGA  Raphanus sativus cv Early Scarlet Globe
FD544071       --> AAAAAGCTCAGCACGATGACTGCAGATGAGTACTTTGAGAAGCACCCTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV528200       --> AAAAAGCTCAGCACGATGACTACAGATGAGTACTTTGAGAAGCACCCTGA  Raphanus raphanistrum subsp. maritimus
EV536640       --> AAAAAGCTCAGCACGATGACTGCAGATGAGTACTTTGAGAAGCACCCTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY899474       --> AAAAAGCTCAGCACGATGACTGCAGATGAGTACTTTGAGAAGCACCCTGA  Raphanus raphanistrum subsp. maritimus
EW724658       --> AAAAAGCTCAGCACGATGACTGCAGATGAGTACTTTGAGAAGCACCCAGA  Raphanus sativus cv Early Scarlet Globe
FD557897       --> AAAAAGCTCAGCACGATGACTGCAGATGAGTACTTTGAGAAGCACCCTGA  Raphanus raphanistrum subsp. landra
EX887031       --> AAAAAGCTCAGCACGATGACTGCAGATGAGTACTTTGAGAAGCACCCAGA  Raphanus sativus var. oleiformis
EY933372       --> AAAAAGCTCAGCACGATGACTGCAGATGAGTACTTTGAGAAGCACCCAGA  Raphanus sativus var. oleiformis
EX773679       --> ..................................................  Raphanus raphanistrum subsp. landra
EV524934       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX748289       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               501    -    551
UN15679        --> ACTCAAAAAGAAGTTTGATGACGAAATCCGTAACGACTACTGGGGATACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538822       <-- ACTCAAAAAGAAGTTTGATGACGAAATCCGTAACGACTGCTGGGGATACT
EV532256       <-- ACTCAAAAAGAAGTTTGATGACGAAATCCGTAACGACTACTGGGGATACT
EX891284       <-- ACTCAAAAAGAAGTTTGATGACGAAATCCGTAACGACTACTGGGGATACT
EY928861       <-- ACTCAAAAAGAAGTTTGATGACGAAATCCGTAACGACTACCGGGGATACT
FD539755       <-- ACTCAAAAAGAAGTTTGATGACGAAATCCGTAACGACTACTGGGGATACT
FD553913       <-- ACTCAAAAAGAAGTTTGATGACGAAATCCGTAACGACTACTGGGGATACT
FD944636       <-- .....................................TACTGGGGATACT
FD542864       --> ACTCAAAAAGAAGTTTGATGACGAAATCCGTAACGACTGCTGGGGATACT
EY937759       --> ACTCAAAAA.........................................
FD544071       --> ACTCAAAAAGAAGTTTGATGACGAAATCCGTAACGACTACTGGGGATACT
EV528200       --> ACTCAAAAAGAAGTTTGATGACGAAATCCGTAACGACTACTGGGGATACT
EV536640       --> ACTCAAAAAGAAGTTTGATGACGAAATCCGTAACGACTACTGGGGATACT
EY899474       --> ACTCAAAAAGAAGTTTGATGACGAAATCCGTAACGACTACTGGGGATACT
EW724658       --> ACTCAAAAAGAAGTTTGATGACGAAATCCGTAACGACTACTGGGGATACT
FD557897       --> ACTCAAAAAGAAGTTTGATGACGAAATCCGTAACGACTACTGGGGATACT
EX887031       --> ACTCAAAAAGAAGTTTGATGACGAAATCCGTAACGACTACTGGGGATACT
EY933372       --> ACTCAAAAAGAAGTTTGATGACGAAATCCGTAACGACTACCGGGGATACT
EX773679       --> ..................................................
EV524934       --> ...............gGATGACGAAATCCGTAACGACTACTGGGGATACT
EX748289       --> .......................................CTGGGGATACT

               551    -    601
UN15679        --> GATGATCATCACGTTTCTTGCATCTCCGGCCTTGAAAAGAAACTAAACTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538822       <-- GATGATCATCACGTTTCTTGCATCTCCGGCCTTGAAAAGAAACTAAACTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV532256       <-- GATGATCATCACGTTTCTTGCATCTCCGGCCTTGAAAAGAAACTAAACTA  Raphanus raphanistrum subsp. maritimus
EX891284       <-- GATGATCATCACGTTTCTTGCATCTCCGGCCTTGAAAAGAAACTAAACTA  Raphanus sativus var. oleiformis
EY928861       <-- GATGATCATCACGTTTCTTGCATCTCCGGCCTTGAAAAGAAACTAAACTA  Raphanus sativus var. oleiformis
FD539755       <-- GATGATCATCACGTTTCTTGCATCTCCGGCCTTGAAAAGAAACTAAACTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD553913       <-- GATGATCATCACGTTTCTTGCATCTCCGGCCTTGAAAAGAAACTAAACTA  Raphanus raphanistrum subsp. landra
FD944636       <-- GATGATCATCACGTTTCTGGCATCTCCGGCCTTGAAAAGAAACTAAACTA  Raphanus sativus cv Early Scarlet Globe
FD542864       --> GATGATCATCACGTTTCTTGCATCTCCGGCCTTGAAAAGAAACTAAACTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY937759       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD544071       --> GATGATCATCACGTTTCTTGCATCTCCGGCCTTGAAAAGAAACTAAACTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV528200       --> GATGATCATCACGTTTCTTGCATCTCCGGCCTTGAAAAGAAACTAAACTA  Raphanus raphanistrum subsp. maritimus
EV536640       --> GATGATCATCACGTTTCTTGCATCTCCGGCCTTGAAAAGAAACTAAACTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY899474       --> GATGATCATCACGTTTCTTGCATCTCCGGCCTTGAAAAGAAACTAAACTA  Raphanus raphanistrum subsp. maritimus
EW724658       --> GATGATCATCACGTTTCTTGCATCTCCGGCCTTGAAAAGGAACTAAACTA  Raphanus sativus cv Early Scarlet Globe
FD557897       --> GATGATCATCACGTTTCTTGCATCTCCGGCCTTGAAAAGAAACTAAACTA  Raphanus raphanistrum subsp. landra
EX887031       --> GATGATCATCACGTTTCTTGCATCTCCGGCCTTGAAAAGAAACTAAACTA  Raphanus sativus var. oleiformis
EY933372       --> GATGATCATCACGTTTCTTGCATCTCCGGCCTTGAAAAGAAACTAAACTA  Raphanus sativus var. oleiformis
EX773679       --> ..................................................  Raphanus raphanistrum subsp. landra
EV524934       --> GATGATCATCACGTTTCTTGCATCTCCGGCCTTGAAAAGAAACTAAACTA  Raphanus raphanistrum subsp. maritimus
EX748289       --> GATGATCATCACGTTTCTTGCATCTCCGGCCTTGAAAAGAAACTAAACTA  Raphanus raphanistrum subsp. maritimus

               601    -    651
UN15679        --> TCTCTCTTTTTTCTTGTACTGTGATTTTTTTTT-CTTGAATAAGTACACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538822       <-- TCTCT-TTTTTTCTTGTACTGTGATTTTTTTTT-CTTGAATAAGTACACT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV532256       <-- TCTCTCTTTTTTCTTGTACTGTGATTTTTTTTT-CTTGAATAAGTACACT  Raphanus raphanistrum subsp. maritimus
EX891284       <-- TCTCTCTTTTTTCTTGTACTGTGATTTTTTTTT-CTTGAATAAGTACACT  Raphanus sativus var. oleiformis
EY928861       <-- TCTCTCTTTTTTCTTGTACTGTGATTTTTTTTT-CTTGAATAAGTACACT  Raphanus sativus var. oleiformis
FD539755       <-- TCTCT-TTTTTTCTTGTACTGTGATTTTTTTTT-CTTGAATAAGTACACT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD553913       <-- TCTCTCTTTTTTCTTGTACTGTGATTTTTTTTT-CTTGAATAAGTACACT  Raphanus raphanistrum subsp. landra
FD944636       <-- TCTTTCTTTTTTCTTGTACTGGGATTTTTTTT--CTTGAATAAGTACACT  Raphanus sativus cv Early Scarlet Globe
FD542864       --> TCTCT-TTTTTTCTTGTACTGTGATTTTTTTTT-CTTGAATAAGTACACT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY937759       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD544071       --> TCTCT-TTTTTTCTTGTACTGTGATTTTTTTTT-CTTGAATAAGTACACT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV528200       --> TCTCTCTTTTTTCTTGTACTGTGATTTTTTTTT-CTTGAATAAGTACACT  Raphanus raphanistrum subsp. maritimus
EV536640       --> TCCCT-TTTTTTCTTGTACTGTGATTTTTTTTT-CTTGAATAAGTACACT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY899474       --> TCTCTCTTTTTTCTTGTACTGTGATTTTTTTTT-CTTGAATAAGTACACT  Raphanus raphanistrum subsp. maritimus
EW724658       --> TCTCTCTTTTTTCTTGTACTGTGATTTTTTTTT-CTTGAATAAGTACACT  Raphanus sativus cv Early Scarlet Globe
FD557897       --> TCTCTCTTTTTTCTTGTACTGTGATTTTTTTTT-CTTGAATAAGTACACT  Raphanus raphanistrum subsp. landra
EX887031       --> TCTCTCTTTTTTCTTGTACTGTGATTTTTTTTT-CTTGAATAAGTACACT  Raphanus sativus var. oleiformis
EY933372       --> TCTCTCTTTTTTCTTGTACTGTGATTTTTTTTT-CTTGAATAAGTACACT  Raphanus sativus var. oleiformis
EX773679       --> ..................................................  Raphanus raphanistrum subsp. landra
EV524934       --> TCTCTCTTTTTTCTTGTACTGTGATTTTTTTTTTCTTGAATAAGTACACT  Raphanus raphanistrum subsp. maritimus
EX748289       --> TCTCTCTCTTTTCTTGTACTGTGATTTTTTTT--CTTGAATAAGTACACT  Raphanus raphanistrum subsp. maritimus

               651    -    701
UN15679        --> CCACTGTTGAGATCTTCATTGGAGATCCAATAAGACAATGATGATCAACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538822       <-- CCACTGTTGAGATCTTCATTGGAGATCCAATAAGACAATGATGATCAACT
EV532256       <-- CCACTGTTGAGATCTTCATTGGAGATCCAATAAGACAATGATGATCAACT
EX891284       <-- CCACTGTTGAGATCTTCATTGGAGATCCAATAAGACAATGATGATCAACT
EY928861       <-- CCACTGTTGAGATCTTCATTGGAGATCCAATAAGACAATGATGATCAACT
FD539755       <-- CCACTGTTGAGATCTTCATTGGAGATCCAATAAGACAATGATGATCAACT
FD553913       <-- CCACTGTTGAGATCTTCATTGGAGATCCAATAAGACAATGATGATCAACT
FD944636       <-- CCACTTTTGAGATCTTCATTGGAGATCCAATAAGACAATGATGATCAACT
FD542864       --> CCACTGTTGAGATCTTCATTGGAGATCCAATAAGACAATGATGATCAACT
EY937759       --> ..................................................
FD544071       --> CCACTGTTGAGATCTTCATTGGAGATCCAATAAGACAATGATGATCAACT
EV528200       --> CCACTGTTGAGATCTTCATTGGAGATCCAATAAGACAATGATGATCAACT
EV536640       --> CCACTGTTGAGATCTTCATTGGAGATCCAATA-GACAATGATGATCAACT
EY899474       --> CCACTGTTGAGATCTTCATTGGAGATCCAATAAGACAATGATGATCAACT
EW724658       --> CCACTGTTGAGATCTTCATTGGAGATCCAATAAGACAATGATGATCAACT
FD557897       --> CCACTGTTGAGATCTTCATTGGAGATCCAATAAGACAATGATGATCAACT
EX887031       --> CCACTGTTGAGATCTTCATTGGAGATCCAATAAGACAATGATGATCAACT
EY933372       --> CCACTGTTGAGATCTTCATTGGAGATCCAATAAGACAATGATGATCAACT
EX773679       --> ..................................................
EV524934       --> CCACTGTTGAGATCTTCATTGGAGATCCAATAAGACAATGATGATCAACT
EX748289       --> CCACTGTTGAGATCTTCATTGGAGATCCAATAAGACAATGATGATCA-CT

               701    -    751
UN15679        --> GG-CTATAGTTTATCCATTTCATAGATGAGTTGATTACATTAAACGACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538822       <-- GG-CTATAGTTTATCCATTTCATAGATGAGTTGATTACATTAAACGACAT
EV532256       <-- GG-CTATAGTTTATCCATTTCATAGATGAGTTGATTACATTAAACGAC..
EX891284       <-- GG-CTATAGTTTATCCATTTC.............................
EY928861       <-- GG-CTATAGTTTATCCATTTCATAGATGAG....................
FD539755       <-- GG-CTATAGTTTATCCATTTCATAGATGAGTTGATTACATTAAACGACAT
FD553913       <-- GG-CTATAGTTTATCCATTTCATAGATGAGTTGATTACATTAAACGACAT
FD944636       <-- GG-CTATAGTTTATCCATTTCATAGATGAGTTGATTACATTAAACGACAT
FD542864       --> GG-CTATAGTTTATCCATTTCATAGATGAGTTGAT-ACATTAAACGACAT
EY937759       --> ..................................................
FD544071       --> GG-CTATAGTTTATCCATTTCATAGATGAGTTGATTACATTAAACGACAT
EV528200       --> GGGCTATAGTTTATCCATTTCATAGATGAGTTGATTACATTAAACGAC..
EV536640       --> GG-CTATAGTTTATCCATTTCATAGATGAGTTGATTACATTAAACGACAT
EY899474       --> GG-CTATAGTTTATCCATTTCATAGATGAGTTGATTACATTAAACGACAT
EW724658       --> GG-CTATAGTTTATCCATTTCATAGATGAGTTGATTACAa..........
FD557897       --> GG-CTATAGTTTATCCATTTCATAGATGAGTTGATTACATTAAACGACAT
EX887031       --> GG-CTATAGTTTATCCATTTCAaaaaaaa.....................
EY933372       --> GG-CTATAGTTTATCCATTTCATAGATGAGTTGATTACATTttctaaaaa
EX773679       --> ..................................................
EV524934       --> GG-CTATAGTTTATCCATTTCATAG.........................
EX748289       --> GG-CTATAGTTTATC-ATTTCATAGATGAGTTGAT...............

               751    -    801
UN15679        --> TTTCTATTTTTCTTTTACACTAAGTGACACTTTTCACATGTGAGATATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538822       <-- TTTCTATTTTTCTTTTACACTAAGTGACACTTTTCACATGTG........  Raphanus raphanistrum subsp. raphanistrum (MS)
EV532256       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX891284       <-- ..................................................  Raphanus sativus var. oleiformis
EY928861       <-- ..................................................  Raphanus sativus var. oleiformis
FD539755       <-- TTTCTATTTTTCTTTTACACTAAGTGACACTTTTCACATGTGAGATATTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD553913       <-- TTTCAATTTTTCTTTTACACTGAGTGACACTTTTCACg............  Raphanus raphanistrum subsp. landra
FD944636       <-- TTTCTATTTTTCTTTTACACTAAGTGACACTTTTCAC.............  Raphanus sativus cv Early Scarlet Globe
FD542864       --> TTTCTATTTT-C-TTTACACTAAGTGACACTTTTCACATGTGAaaaa...  Raphanus raphanistrum subsp. raphanistrum (MS)
EY937759       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD544071       --> TTTCTATTTT-C-TTTACACTAAGTGACACTTTTCACATGTGAGATAT..  Raphanus raphanistrum subsp. raphanistrum (MS)
EV528200       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV536640       --> TTTCT.............................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY899474       --> TTTCTATTTT-C-TTTACACTGAGTGACACTTT-CACATGTGAGATGTTT  Raphanus raphanistrum subsp. maritimus
EW724658       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD557897       --> TTTC-ATTTT-C-TTTACACTGAGTGACACTTTTCACgaaaaaaaa....  Raphanus raphanistrum subsp. landra
EX887031       --> ..................................................  Raphanus sativus var. oleiformis
EY933372       --> a.................................................  Raphanus sativus var. oleiformis
EX773679       --> ..................................................  Raphanus raphanistrum subsp. landra
EV524934       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX748289       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               801    -    851
UN15679        --> TTTGGTGGGAATCATGCGTGCTTTTACAAATTTGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538822       <-- ....................................
EV532256       <-- ....................................
EX891284       <-- ....................................
EY928861       <-- ....................................
FD539755       <-- TTTGGTGGGAATCATGCGTGCTTTTACAAATTTGTC
FD553913       <-- ....................................
FD944636       <-- ....................................
FD542864       --> ....................................
EY937759       --> ....................................
FD544071       --> ....................................
EV528200       --> ....................................
EV536640       --> ....................................
EY899474       --> ....................................
EW724658       --> ....................................
FD557897       --> ....................................
EX887031       --> ....................................
EY933372       --> ....................................
EX773679       --> ....................................
EV524934       --> ....................................
EX748289       --> ....................................