1      -     51
UN15691        --> GGAGATTAGAATGAGCGGTGCGTTATTCAGAAATGTCGCCGCCGACACCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545985       <-- ..................................................
FD565501       <-- ..................................................
FD968161       <-- ..................................................
FD972237       --> GGAGATCAGAATGAGCGGTGCGTTATTCAGAAATGTCGCCGCCGACACCG
FD561289       --> .cAGATTAGAATGAGCGGTGCGTTATTCAGAAATGTCGCCGCCGACACCG
EV550757       --> ..................................................
EX890233       --> ..................................................

               51     -    101
UN15691        --> CACGGCTGATACGGCGGAACGCGGCTGCGGAAATTAAGCAACTGCAATCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545985       <-- ..................................................
FD565501       <-- ..................................................
FD968161       <-- ..................................................
FD972237       --> CACGGCTGATACGGCGGAACGCGGCTGCGGAAATTAAGCAACTGCAATCC
FD561289       --> CACGGCTGATACGGCGGAACGCGGCTGCGGAAATTAAGCAACTGCAATCC
EV550757       --> ................GAACGCGGCTGCGGAAATTAAGCAACTGCAATCC
EX890233       --> ..................................................

               101    -    151
UN15691        --> AGGCCTTATTTCCGCTCACCTCAGCTTCTCGGTAGAGCAAAGGAAACCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545985       <-- ..................................................
FD565501       <-- ..................................................
FD968161       <-- ..................................................
FD972237       --> CGGCCTTATTTCCGCTCACCTCAGCTTCTCGGTAGAGCAAAAGAAACCGG
FD561289       --> AAGCCTTATTTCCGCTCACCTCAGCTCCTCGGTAGAGCAAAGGAAACCGG
EV550757       --> AGGCCTTATTTCCGCTCACCTCAGCTTCTCGGTAGAGCAAAGGAAACCGG
EX890233       --> ...............TCACCTCAGCTCCTCGGTAGAGCAAAGGAAACCGG

               151    -    201
UN15691        --> AATCTCACTTCCGTCTTCTCCTTCCGGTCTCTGTTCATCTGCGAAGGTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545985       <-- .............................................GGTGG
FD565501       <-- ..................................................
FD968161       <-- ..................................................
FD972237       --> AATCTCACTTCCGTCTTCTCCTTCTGATCTCTGTTCATCTCCAAAGGTGG
FD561289       --> AATCTCACTTCCGTCTTCTCCTTCCGGCCTCTGTTCATCGGCGAAGGTGG
EV550757       --> AATCTCACTTCCGTCTTCTCCTTCCGATCTCTGTTCATCTCCGAAGGTGG
EX890233       --> AATCTCACTTCCGTCTTCTCCTTCCGGTCTCTGTTCATCGGCGAAGGTGG

               201    -    251
UN15691        --> GATTCGTAGGATGGTATCTTGGTATGGTGAAATCACGACCGGTCATCACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545985       <-- GATTCGTAGGATGGTATCTTGGTATGGTGAAATCACGACCGGTCATCACC
FD565501       <-- ..................................................
FD968161       <-- ..................................................
FD972237       --> GATTCGTAGGATGGTATCTTGGTATGGTGAAATCACGACCGGTCATCACC
FD561289       --> GATTCGTAGGATGGTATCTTGGTATGGTGAAATCACGACCGGTCATCACC
EV550757       --> GATTCGTAGGATGGTATCTTGGTATGGTGAAATCACGACCGGTCATCACC
EX890233       --> GATTCGTAGGATGGTATCTTGGTATGGTGAAATCACGACCGGTCATCACC

               251    -    301
UN15691        --> AAAAGTGTCACTTCCTCGATTATTTACGTTGCCGCCGATTTGTCTTCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545985       <-- AAAAGTGTCACTTCCTCGATTATTTACGTTGCCGCCGATTTGTCTTCTCA
FD565501       <-- ..................................................
FD968161       <-- ..................................................
FD972237       --> AAAAGTGTCACTTCCTCGATTATTTACGTTGCCGCCGATTTGTCTTCTCA
FD561289       --> AAAAGTGTCACTTCCTCGATTATTTACGTTGCCGCCGATTTGTCTTCTCA
EV550757       --> AAAAGTGTCACTTCCTCGATTATTTACGTTGCCGCCGATTTGTCTTCTCA
EX890233       --> AAAAGTGTCACTTCCTCGATTATTCACGTTGCCGCCGATTTGTCTTCTCA

               301    -    351
UN15691        --> GACAATTTCGAAAAAATCTTCCGAGTCTTACGACTTGTTGAGAACAGCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545985       <-- GACAATTTCGAAAAAATCTTCCGAGTCTTACGACTTGTTGAGAACAGCAA
FD565501       <-- ..................................................
FD968161       <-- ..................................................
FD972237       --> GACAATTTCGAAAAAATCTGACGAGTCTTACGACTTGTTGAGAACAGCAA
FD561289       --> GACAATTTCGAAAAAATCTTCCGAGTCTTACGACTTGTTGAGAACAGCAA
EV550757       --> GACAATTTCGAAAAAATCTTCCGAGTCTTACGACTTGTTGAGAACAGCAA
EX890233       --> GACAATTTCGAAAAAATCTTCCGAGTCTTACGACTTGTTGAGAACAGCAA

               351    -    401
UN15691        --> GGATGGGAGGATATGGTCTACTGGTCTTGGGTCCAACACTTCATTATTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545985       <-- GGATGGGAGGATATGGTCTACTGGTCTTGGGTCCAACACTTCATTATTGG
FD565501       <-- .........................................CATTATTGG
FD968161       <-- ..................................................
FD972237       --> GGATGGGAGGATATGGTCTACTGGTCTTGGGTCCAACACTTCATTATTGG
FD561289       --> GGATGGGAGGATATGGTCTACTGGTCTTGGGTCCAACACTTCATTATTGG
EV550757       --> GGATGGGAGGATATGGTCTACTGGTCTTGGGTCCAACACTTCATTATTGG
EX890233       --> GGATGGGAGGATATGGTCTACTGGTCTTGGGTCCAACACTTCATTATTGG

               401    -    451
UN15691        --> TTCAACTTCATGTCAAGACTCTTCCCAAAACAAGATTTGATCACTACCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545985       <-- TTCAACTTCATGTCAACACTCTTCCCAAAACAAGATTTGATCACTACCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD565501       <-- TTCAACTTCATGTCAAGACTCTTCCCAAAACAAGATTTGATCACTACCTT  Raphanus sativus var. oleiformis
FD968161       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD972237       --> TTCAACTTCATGTCAACACTCTTCCCAAAACAAGATTTGATCACTACCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD561289       --> TTCAACTTCATGTCAAGACTCTTCCCAAAACAAGATTTGATCACTACCTT  Raphanus sativus var. oleiformis
EV550757       --> TTCAACTTCATGTCAACACTCTTCCCAAAACAAGATTTGATCACTACCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX890233       --> TTCAACTTCATGTCAAGACTCTTCCCAAAACAAGATTTGATCACTACCTT  Raphanus sativus var. oleiformis

               451    -    501
UN15691        --> CAAGAAAATGGCCATGGGACAAGCGATCTACGGGCCTATCATGACCGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545985       <-- CAAGAAAATGGCCATGGGACAAACCATCTACGGGCCTATCATGACCGTTG
FD565501       <-- CAAGAAAATGGCCATGGGACAAGCGATCTACGGGCCTATCATGACCGTTG
FD968161       <-- ....................................TATCATGACCGTTG
FD972237       --> CAAGAAAATGGCCATGGGACAAGCGATCTACGGGCCTATCATGACCGTTG
FD561289       --> CAAGAAAATGGCCATGGGACAAGCGATCTACGGGCCTATCATGACCGTTG
EV550757       --> CAAGAAAATGGCCATGGGACAAACCATCTACGGGCCTATCATGACCGTTG
EX890233       --> CAAGAAAATGGCCATGGGGCAAGCGATCTACGGGCCTATCATGACCGTTG

               501    -    551
UN15691        --> TTTTCTTCTCCTTGAACGCTTCCCTACAGGGGGAAAGTGGTTCGGATATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545985       <-- TTTTCTTCCCCTTGAACGCTTCCCTACAGGGGGAAAGTGGTTCGGATATA
FD565501       <-- TTTTCTTCTCCTTGAACGCTTCCCTACAGGGGGAAAGTGGTTCGGATATA
FD968161       <-- TTTTCTTCTCCTTGAACGCTTCCCTACAGGGGGAAAGTGGTTCGGATATA
FD972237       --> TTTTCTTCTCCTTGAACGCTTCCCTACA......................
FD561289       --> TTTTCTTCTCCTTGAACGCTTCCCTACAGGGGGAAAGTGGTTCGGATATA
EV550757       --> TTTTCTTCCCCTTGAACGCTTCCCTACAGGGGGAAAGTGGTTCGGATATA
EX890233       --> TTTTCTTCTCCTTGAACGCTTCCCTACAGGGGGAAAGTGGTTCGGATATA

               551    -    601
UN15691        --> GTTGCAAGATTGAAAAGGGACGTAATCCCTGCAATGTTTAACGGTGTCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545985       <-- GTTGCAAGATTGAAAAGGGATGTAATCCCTGCAATGTTTAACGGTGTCAT
FD565501       <-- GTTGCAAGATTGAAAAGGGACGTAATCCCTGCAATGTTTAACGGTGTCAT
FD968161       <-- GTTGCAAGATTGAAAAGGGACGTAATCCCTGCAATGTTTAACGGTGTCAT
FD972237       --> ..................................................
FD561289       --> GTTGCAAGATTGAAAAGGGACGTAATCCCTGCAATGTTTAACGGTGTCAT
EV550757       --> GTTGCAAGATTGAAAAGGGATGTAATCCCTGCAATGTTTAACGGTGTCAT
EX890233       --> GTTGCAAGATTGAAAGGGGACGTAATCCCTGCAATGTTTAACGGTGTCAT

               601    -    651
UN15691        --> GTATTGGCCTCTTTGTGATTTTATAACATTCAGGTTCTTCCCCGTTCACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545985       <-- GTATTGGCCTCTTTGTGATTTTATAACATTCAGGTTCTTCCCCGTTCACT
FD565501       <-- GTATTGGCCTCTTTGTGATTTTATAACATTCAGGTTTTTCCCCGTTCACT
FD968161       <-- GTATTGGCCTCTTTGTGATTTTATAACATTCAGGTTCTTCCCCGTTCACT
FD972237       --> ..................................................
FD561289       --> GTATTGGCCTCTTTGTGATTTTATAACATTCAG-TTCTTCCCCGTTCACT
EV550757       --> GTATTGGCCTCTTTGTGATTTTATAACATTCAGGTTCTTCCCCGTTCACT
EX890233       --> GTATTGGCCTCTTTGTGATTTTATAACATTCAGGTTCTTCCCCGTTCACT

               651    -    701
UN15691        --> TACAGCCTCTTGTAAGCAACTCGTTTTCATATCTCTGGACAATCTACATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545985       <-- TACAGCCTCTTGTAAGCAACTCGTTTTCATATCTCTGGACAATCTACATG
FD565501       <-- TACAGCCTCTTGTAAGCAACTCGTTTTCATATTTCTGGACAATTTACATG
FD968161       <-- TACAGCCTCTTGTAAGCAACTCGTTTTCATATTTCTGGACAATCTACATG
FD972237       --> ..................................................
FD561289       --> TACAGCCTCTTGTAAGCAACTCGTTTTCATATCTCTGGACA-TCTACATG
EV550757       --> TACAGCCTCTTGTAAGCAACTCGTTTTCATATCTCTGGACAATCTACATG
EX890233       --> TACAGCCTCTTGTAAGCAACTCGTTTTCATATCTCTGGACAATCTACATG

               701    -    751
UN15691        --> ACGTACATGGCAAACCGCGAAAAACCTGCTGTGATTTCAGCTGAAACAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545985       <-- ACGTACATGGCAAACCGCGAAAAACCAGCTGTGATTTCAGCTGAAACAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD565501       <-- ACGTACATGGCAAACCGCGAAAAACCTGCAGTGATTTCAGCTGAAACAAT  Raphanus sativus var. oleiformis
FD968161       <-- ACGTACATGGCAAACCGCGAAAAACCAGCTGTGATTTCAGCTGAAACAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD972237       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD561289       --> ACGTACATGGCAAACCGCGAAAA-CCTGCAGTGATTTCAGCTGAAA-AAT  Raphanus sativus var. oleiformis
EV550757       --> ACGTACATGGCAAACCGCGAAAAACCAGCTGTGATTTCAGCTGAAACAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX890233       --> ACGTACATGGCAAACCGCGAAAAACCTGCAGTGATTTCAGCTGAAACAAT  Raphanus sativus var. oleiformis

               751    -    801
UN15691        --> ATAATACCTTTTACGCTATCTTGCGCGTTGCATTGCCACTCTATTTAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545985       <-- ATAATACCTTTTACGCTATCTTGCGCGTTGCATTGCCACTCTATTTAGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD565501       <-- ATAATACCTTTTACGCTATCTTGCGCATTGCATTGCCACTCTATTTAGAT  Raphanus sativus var. oleiformis
FD968161       <-- ATAATACCTTTTACGCTATCTTGCGCGTTGCATTGCCACTCTATTTAGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD972237       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD561289       --> ATAATACCTTCTACGCTATCTTGCGCATTGCATTG...............  Raphanus sativus var. oleiformis
EV550757       --> ATAATACCTTCTACGCTATCTTGCGCGTTGCATTGCCACTCTATTTAGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX890233       --> ATAATACCTTCTACGCTATCTTGCGCATTGCATTGCCACTCTATTTAGA.  Raphanus sativus var. oleiformis

               801    -    851
UN15691        --> TTAGGTTGGTTGGTTATAAGATTTTATAAGACCACACA-TGTAATGAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545985       <-- TTAGGTTGGTTGGTTATAAGATTTTATAAGACCACACAATGTAATGAGTT
FD565501       <-- TTAGGTTGGTTGGTTATAAGATTTTATAAGACCACACA-TGTAATGATTT
FD968161       <-- TTAGGTTGGTTGGTTATAAGATTTTATAAGACCACACA-TGTAATGAGTT
FD972237       --> ..................................................
FD561289       --> ..................................................
EV550757       --> ..................................................
EX890233       --> ..................................................

               851    -    901
UN15691        --> TTGTTGCCGCAACTACCATTCATTTGTGTGATGTTATTATCATCTTTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545985       <-- TTGTTGCCGCAACTACCATTCATTTGTGTGATGTTATTATCATCTTTGAT
FD565501       <-- TTGTTGCCGCAACTACCATTCATTTTTGTGATatcaatattt........
FD968161       <-- TTGTTGCCGCAACTACCATTCATTTGTGTGATGTCATTATCATATTTGAT
FD972237       --> ..................................................
FD561289       --> ..................................................
EV550757       --> ..................................................
EX890233       --> ..................................................

               901    -    951
UN15691        --> TGTTTGACACAGTATCACTAAAGGTTTGAGTGGTAGTTGCAGATGAAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545985       <-- TGTTTGACACAGTATCACTAAAGGTTTGAGTGGTAGTTGCAGATGAAATG
FD565501       <-- ..................................................
FD968161       <-- TGTTTGACACAGTATCACTAAAGGTTTGAGTGGTAGTTGCAGACGAAATG
FD972237       --> ..................................................
FD561289       --> ..................................................
EV550757       --> ..................................................
EX890233       --> ..................................................

               951    -   1001
UN15691        --> GATTAGTTCACAATGTCGTATGCGGTCTAAACGACTTTAAGTTTTCACGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545985       <-- GATTAGTTCACAATGTCGTATGCGc.........................
FD565501       <-- ..................................................
FD968161       <-- GATTAGTTCACAATGTCGTATGCGGTCTAAACGACTTTAAGTTTTCACGA
FD972237       --> ..................................................
FD561289       --> ..................................................
EV550757       --> ..................................................
EX890233       --> ..................................................

               1001   -   1051
UN15691        --> TCCACAAGTAATTTAATGCGGTATGGACATAACTATAAAGCAAACAGTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545985       <-- ..................................................
FD565501       <-- ..................................................
FD968161       <-- TCCACAAGTAATTTAATGCGGTATGGACATAACTATAAAGCAAACAGTCT
FD972237       --> ..................................................
FD561289       --> ..................................................
EV550757       --> ..................................................
EX890233       --> ..................................................

               1051   -   1101
UN15691        --> GAATGTTTGGAAAATGTCTAGACTTTGTATCTTTGATGTTGGGTTAAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545985       <-- ..................................................
FD565501       <-- ..................................................
FD968161       <-- GAATGTTTGGAAAATGTCTAGACTTTGTATCTTTGATGTTGGGTTAAGCT
FD972237       --> ..................................................
FD561289       --> ..................................................
EV550757       --> ..................................................
EX890233       --> ..................................................

               1101   -   1151
UN15691        --> ATTCTCTGAAGAGATC
                   ~~~~~~~~~~~~~~~~
EV545985       <-- ................
FD565501       <-- ................
FD968161       <-- ATTCTCTGAAGAGATC
FD972237       --> ................
FD561289       --> ................
EV550757       --> ................
EX890233       --> ................