1      -     51
UN15843        --> GGAACAGTCACATTTGCCTACATAATCTCGGCAACATTTGTGTGTTTAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD535574       <-- ........................ATCTCGGCAACATTTGTGTGTTTAAG
EX748067       <-- ..................................................
FD541914       <-- ..................................................
FD971564       <-- ..................................................
FD531206       --> GGAACAGTCACATTTGCCTACATAATCTCGGCAACATTTGTGTGTTTAAG
FD547827       --> ................................................gc
EX752116       --> ..................................................
FD967664       --> ..................................................

               51     -    101
UN15843        --> TTCACTGATGCTTGCAATAGTAAAGGAGATGATTTGGAAGATCTCTGAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD535574       <-- TTCACTGATGCTTGCAATAGTAAAGGAGATGATTTGGAAGATCTCTGAAT
EX748067       <-- ........................tttttTGATTTGGAAGATCTCTGAAT
FD541914       <-- .....................................AAGATCTCTGAAT
FD971564       <-- ..................................................
FD531206       --> TTCACTGATGCTTGCAATAGTAAAGGAGATGATTTGGAAGATCTCTGAAT
FD547827       --> TTCACCGATGCTTGCAATAGTAAAGGAGATGATTTGGAAGATCTCTGAAT
EX752116       --> ..............................GATTTGGAAGATCTCTGAAT
FD967664       --> ..................................................

               101    -    151
UN15843        --> TTGACTAAACGGGTTGAATGAAAGAGTGCTCTTATCCCGTAAGTAGTACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD535574       <-- TTGACTAGACGGGTTGAATGAAAGAGTGCTCTTATCCCGTAAGTAGTACT  Raphanus raphanistrum subsp. maritimus
EX748067       <-- TTGACTAAACGGGTTGAATGAAAGAGTGCTCTTATCCCGTAAGTAGTACT  Raphanus raphanistrum subsp. maritimus
FD541914       <-- TTGACTAAACGGGTTGAATGAAAGTGTGCTCTTATCC-GTAAATAGTACT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD971564       <-- .........................................aaTAGTACT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531206       --> TTGACTAGACGGGTTGAATGAAAGAGTGCTCTTATCCCGTAAGTAGTACT  Raphanus raphanistrum subsp. maritimus
FD547827       --> TTGACTAAACGGGTTGAATGAAAGTGTGCTCTTATCCCGTAAGTAGTACT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX752116       --> TTGACTAAACGGGTTGAATGAAAGAGTGCTCTTATCCCGTAAGTAGTACT  Raphanus raphanistrum subsp. maritimus
FD967664       --> ...............ggATGAAAGTGTGCTCTTATCC-GTAAATAGTACT  Raphanus raphanistrum subsp. raphanistrum (MS)

               151    -    201
UN15843        --> AATACACTTCTCAGACGATAATGGTGAAATATTAAATGCAGTTA-CAGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD535574       <-- AATACACTTCTCAGACGATAATGGTGAAATATTAAATGCAGTTA-CAGCC  Raphanus raphanistrum subsp. maritimus
EX748067       <-- AATACACTTCTCAGACGATAATGGTGAAATATTAAATGCAGTTA-CAGCC  Raphanus raphanistrum subsp. maritimus
FD541914       <-- AATACACTTCTCAGACGATAATAATGAAATATTAAATGCAGTTAACAGCC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD971564       <-- AATACACTTCTCAGACGATAATGATGAAATATTAAATGCAGTTAACAGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531206       --> AATACACTTCTCAGACGATAATGGTGAAATATTAAATGCAGTTA-CAGCC  Raphanus raphanistrum subsp. maritimus
FD547827       --> AATACACTTCTCAGACGATAATGATGAAATATTAAATGCAGTTA-CAGCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX752116       --> AATACACTTCTCAGACGATAATGGTGAAATATTAAATGCAGTTA-CAGCC  Raphanus raphanistrum subsp. maritimus
FD967664       --> AATACACTTCTCAGACGATAATGATGAAATATTAAATGCAGTTAACAGCC  Raphanus raphanistrum subsp. raphanistrum (MS)

               201    -    251
UN15843        --> TTACAGGTCAAACCTCAAGTTCCATTTCCCCTTCATGTTGGCGTTAAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD535574       <-- TTACAGGTCAAACCTCAAGTTCCATTTCCCCTTCATGTTGGCGTTAAGAG
EX748067       <-- TTACAGGTCAAACCTCAAGTTCCATTTCCCCTTCATGTTGGCGTTAAGAG
FD541914       <-- TTACAGGTCAAACCTCAGGTTCCATTTCCCCTTCATGTTGGCGTTAAGAG
FD971564       <-- TTACAGGTCAAACCTCAAGTTCCATTTCCCCTTCATGTTGGCGTTAAGAG
FD531206       --> TTACAGGTCAAACCTCAAGTTCCATTTCCCCTTCATGTTGGCGTTAAGAG
FD547827       --> TTACAGGTCAAACCTCAAGTTCCATTTCCCCTTCATGTTGGCGTTAAGAG
EX752116       --> TTACAGGTCAAACCTCAAGTTCCATTTCCCCTTCATGTTGGCGTTAAGAG
FD967664       --> TTACAGGTCAAACCTCAAGTTCCATTTCCCCTTCATGTTGGCGTTAAGAG

               251    -    301
UN15843        --> TCCAATTGTTTTCTCTAATCTGCATATAAGGAACCTTATCAAACATTTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD535574       <-- TCCAATTGTTTTCTCTAATCTGCATATAAGGAACCTTATCAAACATTTCG
EX748067       <-- TCCAATTGTTTTCTCTAATCTGCATATAAGGAACCTTATCAAACATTTCG
FD541914       <-- TCCAATTGTTTTCTCTAATCTGCATATAAGGAACCTTATCAAACATTTCG
FD971564       <-- TCCAATTGTTTTCTCTAATCTGCATATAAGGAACCTTATCAAACATTTCG
FD531206       --> TCCAATTGTTTTCTCTAATCTGCATATAAGGAACCTTATCAAACATTTCG
FD547827       --> TCCAATTGTTTTCTCTAATCTGCATATAAGGAACCTTATCAAACATTTCG
EX752116       --> TCCAATTGTTTTCTCTAATCTGCATATAAGGAACCTTATCAAACATTTCG
FD967664       --> TCCAATTGTTTTCTCTAATCTGCATATAAGGAACCTTATCAAACATTTCG

               301    -    351
UN15843        --> TAGCCAACTTTGATCCTCACATCCTGATCTTCCTTAAAATTCATTATGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD535574       <-- TAGCCAACTTTGATCCTCACATCCCGATCTTCCTTAAAATTCATTATGTT
EX748067       <-- TAGCCAACTTTGATCCTCACATCCTGATCTTCCTTAAAATTCATTATGTT
FD541914       <-- TAGCCAACTTTGATCCTCACATCCTGATCTTCCTTAAAATTCATTATGTT
FD971564       <-- TAGCCAACTTTGATCCCCACATCCTGATCTTCCTTAAAATTCATTATGTT
FD531206       --> TAGCCAACTTTGATCCTCACATCCCGATCTTCCTTAAAATTCATTATGTT
FD547827       --> TAACCAACTTTGATCCTCACATCCTGATCTTCCTTAAAATTCATTATGTT
EX752116       --> TAGCCAACTTTGATCCTCACATCCTGATCTTCCTTAAAATTCATTATGTT
FD967664       --> TAGCCAACTTTGATCCCCACATCCTGATCTTCCTTAAAATTCATTATGTT

               351    -    401
UN15843        --> CCAGGCAAATTCTGCAGCTCCTATAGGGTTCCTCTGATTGAAGTCTTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD535574       <-- CCAGGCAAATTCTGCAGCTCCTATAGGGTTCATCTGATTGAAGTCTTGAT
EX748067       <-- CCACGCAAATTCTGCAGCTCCTATAGGGTTCCTCTGATTGAGGTCTTGAT
FD541914       <-- CCAGGCAAATTCTGCAGCTCCTATAGGGTTCCTCTGATTGAAGTCTTGAT
FD971564       <-- CCAGGCAAATTCTGCAGCTCCTATAGGGTTCCTCTGATTGAAGTCTTGAT
FD531206       --> CCAGGCAAATTCTGCAGCTCCTATAGGGTTCATCTGATTGAAGTCTTGAT
FD547827       --> CCAGGCAAATTCTGCAGCTCCTATAGGGTTCCTCTGATTGAAGTCTTGAT
EX752116       --> CCACGCAAATTCTGCAGCTCCTATAGGGTTCCTCTGATTGAGGTCTTGAT
FD967664       --> CCAGGCAAATTCTGCAGCTCCTATAGGGTTCCTCTGATTGAAGTCTTGAT

               401    -    451
UN15843        --> CAAAATCACACCGGCCTTTGACATTGAAGGTGACACTCTTATCATCTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD535574       <-- CAAAATCACACCGGTCTTTGACATTGAAGGTGACACTCTTATCATCTCTC  Raphanus raphanistrum subsp. maritimus
EX748067       <-- CAAAATCGCACCGGCCTTTGACATTGAAGGTGACACTCTTATCATCTCTC  Raphanus raphanistrum subsp. maritimus
FD541914       <-- CAAAATCACACCGGCCTTTGACATTGAAGGTGACAGTCTTATCATCTCTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD971564       <-- CAAAATCACACCGGCCTTTGACATTGAAGGTGACAGTCTTATCATCTCTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531206       --> CAAAATCACACCGGTCTTTGACATTGAAGGTGACACTCTTATCATCTCTC  Raphanus raphanistrum subsp. maritimus
FD547827       --> CAAAATCACACCGGCCTTTGACATTGAAGGTCACACTCTTATCATCTCTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX752116       --> CAAAATCGCACCGGCCTTTGACATTGAAGGTGACACTCTTATCATCTCTC  Raphanus raphanistrum subsp. maritimus
FD967664       --> CAAAATCACACCGGCCTTTGACATTGAAGGTGACAGTCTTATCATCTCTC  Raphanus raphanistrum subsp. raphanistrum (MS)

               451    -    501
UN15843        --> ACGGGAAACTCTTTTTTCCCGCGCACATGACACCGAAGCTTTTGGCGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD535574       <-- ACGGGAAACTCTTTTTTCCCGCGCACATGACACCGAAGCTTTTGGCGCTT  Raphanus raphanistrum subsp. maritimus
EX748067       <-- ACGGGAAACTCTTTTTTCCCGCGCACATGACACCGAAGCTTTTGGCGCTT  Raphanus raphanistrum subsp. maritimus
FD541914       <-- ACGGGAAACTCTTTTTTCCCGCGCACATGGCACCGAAGCTTTTGGCGCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD971564       <-- ACGGGAAACTCTTTTTTCCCGCGCACATGGCACCGAAGCTTTTGGCGCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531206       --> ACGGGAAACTCTTTTTTCCCGCGCACATGACACCGAAGCTTTTGGCGCTT  Raphanus raphanistrum subsp. maritimus
FD547827       --> ACGGGAAACTCTTTTTTCCCGCGCACATGACACCGAAGCTTTTGGCGCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX752116       --> ACGGGAAACTCTTTTTTCCCGCGCACATGACACCGAAGCTTTTGGCGCTT  Raphanus raphanistrum subsp. maritimus
FD967664       --> ACGGGAAACTCTTTTTTCCCGCGCACATGGCACCGAAGCTTTTGGCGCTT  Raphanus raphanistrum subsp. raphanistrum (MS)

               501    -    551
UN15843        --> ATCATAATGGATGCCTACTCCCAGCCCTGTTGAAGCCTCGGGGAAAAGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD535574       <-- ATCGTAATGGATGCCTACTCCCAGCCCTGTTGAAGCCTCGGGGAAAAGGT  Raphanus raphanistrum subsp. maritimus
EX748067       <-- ATCATAATGGATGCCTACTCCCAGCCCTGTTGAAGCCTCGGGGAAAAGGT  Raphanus raphanistrum subsp. maritimus
FD541914       <-- ATCATAATGGAATCCAACTCCCAGCCCTGTTGAAGCCTCGGGGAAAAGGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD971564       <-- ATCATAATGGAATCCAACTCCCAGCCCTGTTGAAGCCTCGGGGAAAAGGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531206       --> ATCGTAATGGATGCCTACTCCCAGCCCTGTTGAAGCCTCGGGGAAAAGGT  Raphanus raphanistrum subsp. maritimus
FD547827       --> ATCGTAATGGATGCCTACTCCCAGCCCTGTTGAAGCCTCGGGGAATAAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX752116       --> ATCATAATGGATGCCTACTCCCAGCCCTGTTGAAGCCTCGGGGAAAAGGT  Raphanus raphanistrum subsp. maritimus
FD967664       --> ATCATAATGGAATCCAACTCCCAGCCCTGTTGAAGCCTCGGGGAAAAGGT  Raphanus raphanistrum subsp. raphanistrum (MS)

               551    -    601
UN15843        --> GTCTAATCATCGCACAGAAGTAACTAGGAGCCCCAGTTCCAGTATCTAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD535574       <-- GTCTAATCATCGCACAGAAGTAACTCGGAGCCCCAGTTCCAGTATCTAGC
EX748067       <-- GTCTAATCATCGCACAGAAGTAACTAGGAGCCCCAGTTCCAGTATCTAGC
FD541914       <-- GTCTAATCATCGCACAGAAGTAACTAGGAGCCCCAGTTCTAGTATCTAGC
FD971564       <-- GTCTAATCATCGCACAGAAGTAACTAGGAGCCCCAGTTCCAGTATCTAGC
FD531206       --> GTCTAATCATCGCACAGAAGTAACTCGGAGCCCCAGTTCCAGTATCTAGC
FD547827       --> GTCTAATCATCGCACAGAAGTAGCTAGGAGCCCCAGTTCCAGTATCTAGC
EX752116       --> GTCTAATCATCGCACAGAAGTAACTAGGAGCCCCAGTTCCAGTATCTAGC
FD967664       --> GTCTAATCATCGCACAGAAGTAACTAGGAGCCCCAGTTCCAGTATCTAGC

               601    -    651
UN15843        --> TCTCCATGAAGCTGCAAATGGGTTTTCGAGTTCACATGGAGCTTCTCCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD535574       <-- TCTCCATGAAGCTGCAAATGGGTTTTCGAGTTCACATGGAGCTTATCTTT
EX748067       <-- TCTCCATGAAGCTGCAAATGGGTTTTCGAGTTCACATGGAGCTTCTCCTT
FD541914       <-- TCTCCATGAAGCTGCAAATGGGTTCTCGAGTTCACATGGAGCTTCTCCTT
FD971564       <-- TCTCCATGAAGCTGCAAATGGGTTTTCGAGTTCACATGGAGCTTCTCCTT
FD531206       --> TCTCCATGAAGCTGCAAATGGGTTTTCGAGTTCACATGGAGCTTATCTTT
FD547827       --> TCTCCATGAAGCTGCAAATGGGTTTTCGAGTTCACATGGAGCTTCTCCTT
EX752116       --> TCTCCATGAAGCTGCAAATGGGTTTTCGAGTTCACATGGAGCTTCTCCTT
FD967664       --> TCTCCATGAAGCTGCAAATGGGTTTTCGAGTTCACATGGAGCTTCTCCTT

               651    -    701
UN15843        --> CGCATGGATTTTCAAAGACTTTGAATTGCACGTATACCTCAGAGACGTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD535574       <-- CGCATGGATTTTCAAAGACTTTGAATTGCACGTATACCTCAGAGACGTCT
EX748067       <-- CGCATGGATTTTCAACGACTTTGAATTGCATGTATACCTCAGAGACGTCT
FD541914       <-- CGCATGGATTTTCAAAGACTTTGAATTGCACGTATACCTCAGAGACGTCT
FD971564       <-- CGCATGGATTTTCAAAGACTTTGAATTGCACGTATACCTCAGAGACGTCT
FD531206       --> CGCATGGATTTTCAAAGACTTTGAATTGCACGTATACCTCAGAGACGTCT
FD547827       --> CGCATGGATTTTCAAAGACTTTGAATTGCACGTATACCTCAGAGACGTCT
EX752116       --> CGCATGGATTTTCAACGACTTTGAATTGCATGTATACCTCAGAGACGTCT
FD967664       --> CGCATGGATTTTCAAAGACTTTGAATTGCACGTATACCTCAGAGACGTCT

               701    -    751
UN15843        --> CCATCTTCCCC-TCCACCAAAGATTTTTCTCGAGAAAATCGCCCAAGCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD535574       <-- CCATCTTCCCC-TCCACCAAAGATTTTTCTCGAAAAAA............  Raphanus raphanistrum subsp. maritimus
EX748067       <-- CCATCTTCCCC-TCCACCAAAGATTTTTCTCGAGAAAGTCGCCCAAGCAA  Raphanus raphanistrum subsp. maritimus
FD541914       <-- CCATCTTCCCCCTTCACCAAAGATTTTTCTCGAGAAAATCGCCC......  Raphanus raphanistrum subsp. raphanistrum (MS)
FD971564       <-- CCATCTTCCCCCTTCACCAAAGATTTTTCTCGAGAAAATCGCCCAAGAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531206       --> CCATCTTCCCC-T.....................................  Raphanus raphanistrum subsp. maritimus
FD547827       --> CCATCTTCCCC-TCCACCAAAGATTTTTCTCGAGAAAATAGCCCAAGaaa  Raphanus raphanistrum subsp. raphanistrum (NY)
EX752116       --> CCATCTTCCCC-TCCACCAAAGATTTTTCTCGAGAAAGTCGCCCAAGCAA  Raphanus raphanistrum subsp. maritimus
FD967664       --> CCATCTTCCCCCTTCACCAAAGATTTTTCTCGAGAAAATCGCCCAAGAAA  Raphanus raphanistrum subsp. raphanistrum (MS)

               751    -    801
UN15843        --> AAAAAAACACACCAAACACACAGAAGGAAGCAGAGAGCGAAAACACCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD535574       <-- ..................................................
EX748067       <-- AAAAAAACACACCAAACACACAGAAGGAAGCAGAGAGCGAAAACACCAAA
FD541914       <-- ..................................................
FD971564       <-- AAAA..............................................
FD531206       --> ..................................................
FD547827       --> ..................................................
EX752116       --> AAAAAA............................................
FD967664       --> AAAA..............................................

               801    -    851
UN15843        --> CCAAAACCTCACCTAGTTTCGACTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~
FD535574       <-- ..........................
EX748067       <-- CCAAAACCTCACCTAGTTTCGACTCC
FD541914       <-- ..........................
FD971564       <-- ..........................
FD531206       --> ..........................
FD547827       --> ..........................
EX752116       --> ..........................
FD967664       --> ..........................