Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN15931

               1      -     51
UN15931        --> GGAGACAATCAAATAATCAAACCTCTAATCGAACGCAAAAAAAAAAGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961749       <-- ..................................................
EX900943       <-- ..................................................
FD582448       <-- ..................................................
EY919612       <-- ..................................................
EY920350       <-- ..................................................
EX775474       <-- ..................................................
FD959886       <-- ..................................................
EX897125       --> GGAGACAATCAAATAATCAAACCTCTAATCGAACGCAAAAAAAAAAGAAG

               51     -    101
UN15931        --> AAGCAGAGCTATGGATGCAAACCAACGAATCGCAAGAATCTCTGCTCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961749       <-- ..................................................
EX900943       <-- ..................................................
FD582448       <-- ..................................................
EY919612       <-- ..................................................
EY920350       <-- ..................................................
EX775474       <-- ..................................................
FD959886       <-- ..................................................
EX897125       --> AAGCAGAGCTATGGATGCAAACCAACGAATCGCAAGAATCTCTGCTCATC

               101    -    151
UN15931        --> TCAACCCTCCTAATCTCGACCAGATTGGTTCCGGGTCGGATCTGAGACGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961749       <-- ..................................................
EX900943       <-- ..................................................
FD582448       <-- ..................................................
EY919612       <-- ..................................................
EY920350       <-- ..................................................
EX775474       <-- ..................................................
FD959886       <-- ..................................................
EX897125       --> TCAACCCTCCTAATCTCGACCAGATTGGTTCCGGGTCGGATCTGAGACGG

               151    -    201
UN15931        --> GTGGGTTGTCGGGCGAAAGGCGGGTCTCGCTTCTCCATCTCTACGACGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961749       <-- ..................................................
EX900943       <-- ..................................................
FD582448       <-- ..................................................
EY919612       <-- ..................................................
EY920350       <-- ..................................................
EX775474       <-- ..................................................
FD959886       <-- ..................................................
EX897125       --> GTGGGTTGTCGGGCGAAAGGCGGGTCTCGCTTCTCCATCTCTACGACGTT

               201    -    251
UN15931        --> GCTAACGCTCCTGGTGTCACCGCTGATATTAGTCACATGGACACTAGTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961749       <-- ..................................................
EX900943       <-- ..................................................
FD582448       <-- ..................................................
EY919612       <-- ..................................................
EY920350       <-- ..................................................
EX775474       <-- ..................................................
FD959886       <-- ..................................................
EX897125       --> GCTAACGCTCCTGGTGTCACCGCTGATATTAGTCACATGGACACTAGTGC

               251    -    301
UN15931        --> CATCGTTCGTGGATTTCTCGGACAACCACAATTAGAGGAGGCGCTTACGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961749       <-- ..................................................
EX900943       <-- ..................................................
FD582448       <-- ..................................................
EY919612       <-- ..................................................
EY920350       <-- ..................................................
EX775474       <-- ..................................................
FD959886       <-- ..................................................
EX897125       --> CATCGTTCGTGGATTTCTCGGACAACCACAATTAGAGGAGGCGCTTACGG

               301    -    351
UN15931        --> GTATGGATCTAGTGATTATACCAGCTGGAGTTCCGAGGAAGCCAGGGATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961749       <-- ..................................................
EX900943       <-- ..................................................
FD582448       <-- ..................................................
EY919612       <-- ..................................................
EY920350       <-- ..................................................
EX775474       <-- ..................................................
FD959886       <-- ..................................................
EX897125       --> GTATGGATCTAGTGATTATACCAGCTGGAGTTCCGAGGAAGCCAGGGATG

               351    -    401
UN15931        --> ACGAGGGATGATCTTTTCAACATCAACGCCGGCATCGTCAGGACGCTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961749       <-- ..................................................
EX900943       <-- ..................................................
FD582448       <-- ..................................................
EY919612       <-- ..................................................
EY920350       <-- ..................................................
EX775474       <-- ..................................................
FD959886       <-- ..................................................
EX897125       --> ACGAGGGATGATCTTTTCAACATCAACGCCGGCATCGTCAGGACGCTCTC

               401    -    451
UN15931        --> CGAAGCTATAGCCAAGTGCTGTCCCAAAGCGATTGTGAATATCATCAGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961749       <-- ......TATAGCCAAGTGCTGTCCCAAAGCGATTGTGAATATCATCAGTA
EX900943       <-- ..................................................
FD582448       <-- ..................................................
EY919612       <-- ..................................................
EY920350       <-- ..................................................
EX775474       <-- ..................................................
FD959886       <-- ..................................................
EX897125       --> CGAAGCTATAGCCAAATGCTGTCCCAAAGCGATTGTGAATATCATCAGTA

               451    -    501
UN15931        --> ATCCGGTGAACTCCACGGTGCCGATCGCGGCCGAG-TTTTCAAGAAAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961749       <-- ATCCCGTGAACTCCACGGTGCCGATCGCAGCGGAGGTTTTCAAGAGAGCT
EX900943       <-- .......GAACTCCACGGTGCCGATCGCGGCCGAG-TTTTCAAGAAAGCT
FD582448       <-- ..................................................
EY919612       <-- ..................................................
EY920350       <-- ..................................................
EX775474       <-- ..................................................
FD959886       <-- ..................................................
EX897125       --> ATCCGGTGAACTCCACGGTGCCGATCGCGGCCGAGGTTTTCAAGAAAGCT

               501    -    551
UN15931        --> GGTACTTTTGATCCGAAGAAACTCATGGGAGTCACCATGCTTGATGTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961749       <-- GGTACTTTTGATCCGAAGAAACTCATGGGAGTCACCATGCTTGATGTTGT
EX900943       <-- GGTACTTTTGATCCGAAGAAACTCATGGGAGTCACCATGCTTGATGTTGT
FD582448       <-- ...........TCCGAAGAAACTCATGGGAGTCACCATGCTTGATGTTGT
EY919612       <-- .................GAAACTCATGGGAGTCACCATGCTTGATGTTGT
EY920350       <-- ..................................................
EX775474       <-- ..................................................
FD959886       <-- ..................................................
EX897125       --> GGTACTTTTGATCCGAAGAAACTCATGGGAGTCACCATGCTTGATGTTGT

               551    -    601
UN15931        --> TAGAGCTAATACTTTTGTGGCGGAAGTAATGAGTCTTGATCCTCGAGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961749       <-- TAGAGCTAATACTTTTGTGGCGGAAGTAATGAGTCTTGATCCTCGAGAAG
EX900943       <-- TAGAGCTAATACTTTTGTGGCGGAAGTAATGAGTCTTGATCCTCGAGAAG
FD582448       <-- TAGAGCTAATACTTTTGTGGCGGAAGTAATGAGTCTTGATCCTCGAGAAG
EY919612       <-- TAGAGCTAATACTTTTGTGGCGGAAGTAATGAGTCTTGATCCTCGAGAAG
EY920350       <-- ..........................................TCGAGAAG
EX775474       <-- ..................................................
FD959886       <-- ..................................................
EX897125       --> TAGAGCTAATACTTTTGTGGCGGAAGTAATGAGTCTTGATCCTCGAGAAG

               601    -    651
UN15931        --> TTGATGTTCCGGTTGTTGGAGGACACGCAGGAGTTACAATCTTGCCTCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961749       <-- TTGATGTTCCGGTTGTTGGAGGACACGCAGGAGTTACAATCCTGCCTCTG
EX900943       <-- TTGATGTTCCGGTCGTTGGAGGACACGCAGGAGTTACAATCTTGCCTCTG
FD582448       <-- TTGATGTTCCAGTTGTTGGAGGACACGCAGGAGTTACAATCTTGCCTCTG
EY919612       <-- TTGATGTTCCGGTTGTTGGAGGACACGCAGGAGTTACAATCTTGCCTCTG
EY920350       <-- TTGATGTTCCGGTTGTTGGAGGACACGCAGGAGTTACAATCTTGCTTCTG
EX775474       <-- ..................................................
FD959886       <-- ..................................................
EX897125       --> TTGATGTTCCGGTCGTTGGAGGACACGCAG-AGTTACAATCTTGCCTCTG

               651    -    701
UN15931        --> CTTTCTCAGGTGAAGCCTCCTTGCTCTTTCACTCAGAAAGAGATTGAATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961749       <-- CTTTCTCAGGTGAAGCCTCCTTGCTCTTTCACTCAGAAAGAGATTGAATA  Raphanus raphanistrum subsp. maritimus
EX900943       <-- CTTTCTCAGGTGAAACCTCCTTGCTCTTTCACTCAGAAAGAGATTGAATA  Raphanus sativus cv Early Scarlet Globe
FD582448       <-- CTTTCTCAGGTGAAACCTCCTTGCTCTTTCACTCTGAAAGAGATTGAATA  Raphanus sativus cv Rat-Tail Radish #3870
EY919612       <-- CTTTCTCAGGTGAAGCCTCCTTGCTCTTTCACTCAGAAAGAGATTGAATA  Raphanus raphanistrum subsp. landra
EY920350       <-- CTTTCTCAGGTGAAGCCTCCTTGCTCTTTCACTCAGAAAGAGATTGAATA  Raphanus raphanistrum subsp. landra
EX775474       <-- .TTTCTCAGGTGAAGCCTCCTTGCTCTTTCACTCAGAAAGAGATTGAATA  Raphanus raphanistrum subsp. landra
FD959886       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX897125       --> CTTTCTCAG-TGAAACCTCCTTGCTCTTTCACTCAGAAAGAGATTGA-TA  Raphanus sativus cv Early Scarlet Globe

               701    -    751
UN15931        --> TCTCACAGACCGCATCCAAAATGGTGGCACTGAAGTTGTCGAGGCAAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961749       <-- TCTCACAGACCGCATCCAAAATGGTGGCACTGAAGTTATCGAGGCAAAAG
EX900943       <-- TCTCACAGACCGCATCCAAAATGGTGGCACTGAAGTTGTCGAGGCAAAAG
FD582448       <-- TCTCACAGACCGCATCCAAAATGGTGGCACTGAAGTTGTCGAGGCAAAAG
EY919612       <-- TCTCACAGACCGCATCCAAAATGGTGGCACTGAAGTTGTCGAGGCAAAAG
EY920350       <-- TCTCACAGACCGCATCCAAAATGGTGGCACTGAAGTTGTCGAGGCAAAAG
EX775474       <-- TCTCACAGACCGCATCCAAAATGGTGGCACTGAAGTTGTCGAGGCAAAAG
FD959886       <-- ..................................................
EX897125       --> TCT...............................................

               751    -    801
UN15931        --> CTGGTGCAGGTTCTGCAACATTATCAATGGCTTACGCAGCAGTGAAGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961749       <-- CTGGTGCAGGTTCTGCAACATTATCAATGGCTTACGCAGCAGTGAAGTTT
EX900943       <-- CTGGTGCAGGTTCTGCAACACTATCAATGGCTTACGCAGCAGTGAAGTTT
FD582448       <-- CTGGTGCAGGTTCTGCAACATTATCAATGGCTTACGCAGCAGTGAAGTTT
EY919612       <-- CTGGTGCAGGTTCTGCAACATTATCAATGGCTTACGCAGCAGTGAAGTTT
EY920350       <-- CTGGTGCAGGTTCTGCAACATTATCAATGGCTTACGCAGCAGTGAAGTTT
EX775474       <-- CTGGTGCAGGTTCTGCAACATTATCAATGGCTTACGCAGCAATGAAGTTT
FD959886       <-- ..................................................
EX897125       --> ..................................................

               801    -    851
UN15931        --> GCAGATGCTTGCCTCAAGGGTTTAAGAGGCGATGCAAACATTGTCGAGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961749       <-- GCAGATGCTTGCCTCAAGGGTCTAAGAGGCGATGCAAACATTGTCGAGTG
EX900943       <-- GCAGATGCTTGTCTCAGGGGTCTACGAGGCGATGCAAACATTGTCGAGTG
FD582448       <-- GCAGATGCTTGTCTCAGGGGTTTACGAGGCGATGCAAACATTGTCGAGTG
EY919612       <-- GCAGATGCTTGCCTCAAGGGTCTAAGAGGCGATGCAAACATTGTCGAGTG
EY920350       <-- GCAGATGCTTGCCTCAAGGGTTTAAGAGGCGATGCAAACATTGTCGAGTG
EX775474       <-- GCAGATGCTTGCCTCAAGGGTTTAAGAGGCGATGCAAACATTGTCGAGTG
FD959886       <-- ................................TGCAAACATTGTCGAGTG
EX897125       --> ..................................................

               851    -    901
UN15931        --> TGCATTTGTGGCATCTCATGTGACTGAGCTTCCCTTCTTCGCATCAAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961749       <-- TGCATTTGTGGCATCTCATGTGACTGAGCTTCCCTTCTTCGCATCAAAGG
EX900943       <-- TGCATTTGTGGCATCTCATGTGACTGAGCTTCCCTTCTTCGCATCAAAGG
FD582448       <-- TGCATTTGTGGCATCTCATGTGACTGAGCTTCCCTTCTTCGCATCAAAGG
EY919612       <-- TGCATTTGTGGCATCTCATGTGACTGAGCTTCCCTTCTTCGCATCAAAGG
EY920350       <-- TGCATTTGTGGCATCTCATGTGACTGAGCTTCCCTTCTTCGCATCAAAGG
EX775474       <-- TGCATTTGTGGCATCTCATGTGACTGAGCTTCCCTTCTTCGCATCAAAGG
FD959886       <-- TGCATTTGTGGCATCTCATGTGACTGAGCTTCCCTTCTTCGCATCAAAGG
EX897125       --> ..................................................

               901    -    951
UN15931        --> TGCGTCTAGGAAGATGTGGGGTAGATGAAGTGTACGGTCTCGGACCATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961749       <-- TGCGTCTAGGAAGATGTGGGGTAGATGAAGTGTACGGTCTCGGACCATTG
EX900943       <-- TGCGTCTAGGAAGATGTGGGGTAGATGAAGTGTACGGTCTCGGACCATTG
FD582448       <-- TGCGTCTAGGAAGATGTGGGGTAGATGAAGTGTACGGTCTCGGACCATTG
EY919612       <-- TGCGTCTAGGAAGATGTGGGGTAGATGAAGTGTACGGTCTCGGACCATTG
EY920350       <-- TGCGTCTAGGAAGATGTGGGGTAGATGAAGTGTACGGTCTCGGACCATTG
EX775474       <-- TGCGTCTAGGAAGATGTGGGGTAGATGAAGTGTACGGTCTCGGACCATTG
FD959886       <-- TGCGTCTAGGAAGATGTGGGGTAGATGAAGTGTACGGTCTCGGACCATTG
EX897125       --> ..................................................

               951    -   1001
UN15931        --> AACGAATACGAGAGGATGGGATTAGAGAAGGCAAAGAAAGAGCTTGGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961749       <-- AACGAATACGAGAGGATGGGATTAGAGAAGGCAAAGAAAGAGCTTGGAGG
EX900943       <-- AACGAATACGAGAGGATGGGATTAGAGAAGTCAAAGAAAGAGCTTGGAGG
FD582448       <-- AACGAATACGAGAGGATGGGATTAGAGAAGGCAAAGAAAGAGCTTGGAGG
EY919612       <-- AACGAATACGAGAGGATGGGATTAGAGAAGGCAAAGAAAGAGCTTGGAGG
EY920350       <-- AACGAATACGAGAGGATGGGATTAGAGAAGGCAAAGAAAGAGCTTGGAGG
EX775474       <-- AACGAATACGAGAGGATGGGATTAGAGAAGGCAAAGAAAGAGCTTGGAGG
FD959886       <-- AACGAATACGAGAGGATGGGATTAGAGAAGGCAAAGAAAGAGCTTGGAGG
EX897125       --> ..................................................

               1001   -   1051
UN15931        --> GAGTATTGCGAAAGGTGTTACCTTTGTCAAGAAGTAGTAAAGAGAATTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961749       <-- GAGTATTGCGAAAGGTGTTACCTTTGCCAAGAAGTAGTAAAGAGAATTGA
EX900943       <-- GAGTATTGCGAAAGGTGTTACCTTTGTCAAGAAGTAGTAAAGAGAATTGA
FD582448       <-- GAGTATTGCGAAAGGTGTTACCTTTGTCAAGAAGTAGTAAAGAGAATTGA
EY919612       <-- GAGTATTGCGAAAGGTGTTACCTTTGTCAAGAAGTAGTAAAGAGAATTGA
EY920350       <-- GAGTATTGCGAAAGGTGTTACCTTTGTCAAGAAGTAGTAAAGAGAATTGA
EX775474       <-- GAGTATTGCGAAAGGTGTTACCTTTGTCAAGAAGTAGTAAAGAGAATTGA
FD959886       <-- GAGTATTGCGAAAGGTGTTACCTTTGCCAAGAAGTAGTAAAGAGAATTGA
EX897125       --> ..................................................

               1051   -   1101
UN15931        --> TAAAAAACGCTTTTAGTTTTATCTTTCGAATAGTGATTGTTTGGAATAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961749       <-- TAAAAAACGCTTTTAGTTTTATCTTTCGAATAGTGATTGTTTGGAATAAG
EX900943       <-- TAAAAA-CACTTTTAGTTTTATCTTTCGAATAGTGATTGTTTGGAATAAG
FD582448       <-- TAAAAA-CACTTTTAGTTTTATCTTTCGAATAGTGATTGTTTGGAATAAG
EY919612       <-- TAAAAAACGCTTTTAGTTTTATCTTTCGAATAGTGATTGTTTGGAATAAG
EY920350       <-- TAAAAAACGCTTTTAGTTTTATCTTTCGAATAGTGATTGTTTGGAATAAG
EX775474       <-- TAAAAAACGCTTTTAGTTTTATCTTTCGAATAGTGATTGTTTGGAATAAG
FD959886       <-- TAAAAAACGCTTTTAGTTTTATCTTTCGAATAGTGATTGTTTGGAATAAG
EX897125       --> ..................................................

               1101   -   1151
UN15931        --> AACAATGCCTC--GCAATGAAAGCTCCTGCGAGTAGAGTCTGATTTTGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961749       <-- AACAATGCCTC--GCAATGAAAGCTCCTGCGAGTAGAGTCTGATTTTGAA
EX900943       <-- AACAATGCCTCTCGCAATGAAAGCTCCTGCGGGTAGAGTCTGATTTTGAA
FD582448       <-- AACAATGCCTCTCGCAATGAAAGCTCCTGCGGGTAGAGTCTGATTTTGAA
EY919612       <-- AACAATGCCTC--GCAATGAAAGCTCCTGCGAGTAGAGTCTGATTTTGAA
EY920350       <-- AACAATGCCTC--GCAATGAAAGCTCCTGCGAGTAGAGTCTGATTTTGAA
EX775474       <-- AACAATACCTC--GCAATGAAAGCTCCTGCGAGTAGAGTCTGATTTTGAA
FD959886       <-- AACAATGCCTC--GCAATGAAAGCTCCTGCGAGTAGAGTCTGATTTTGAA
EX897125       --> ..................................................

               1151   -   1201
UN15931        --> GATTTAATAAACTGCAATCACTTTGTTCTTAGATACGAGAACGTTTATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961749       <-- GATTTAATAAACTGCAATCACTTTGTTCTTAGATACGAGAACGTTTATGA
EX900943       <-- GATTTAATAAACTGCAATCACTTTGTTCTTAGATACGAGAACGTTTATGA
FD582448       <-- GATTTAATAAACTGCAATCACTTTGTTTTTAGATACGAGAACGTTTATGA
EY919612       <-- GATTTAATAAACTGCAATCACTTTGTTCTTAGATACGAGAACGTTTATGA
EY920350       <-- GATTTAATAAACTGCAATCACTTTGTTCTTA...................
EX775474       <-- GATTTAATAAACTGCAATCACTTTGTTCTTAGATACGAGAACGTTTATGA
FD959886       <-- GATTTAATAAACTGCAATCACTTTGTTCTTAGATACGAGAACGTTTATGA
EX897125       --> ..................................................

               1201   -   1251
UN15931        --> GTTCATATTCTTGTCTTCTTGGTATGTTTCCTCAGTTTTATGTGTGTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961749       <-- GTTCATATTCTT......................................
EX900943       <-- GTTCATATTCTTGTCTTCTTGGc...........................
FD582448       <-- GTTCATATTCTTGTCTTCTTGGTATGTTTCCTCAGTTTTATGTGTG....
EY919612       <-- GTTCATATTCTTGTCTTCTTGGTATGTTTCCTCAGTTTTATGTGTGTTTT
EY920350       <-- ..................................................
EX775474       <-- GTTCATATTCTTGTCTc.................................
FD959886       <-- GTTCATATTCTT......................................
EX897125       --> ..................................................

               1251   -   1301
UN15931        --> TCTTCTGCCG
                   ~~~~~~~~~~
FD961749       <-- ..........
EX900943       <-- ..........
FD582448       <-- ..........
EY919612       <-- TCTTCTGCCG
EY920350       <-- ..........
EX775474       <-- ..........
FD959886       <-- ..........
EX897125       --> ..........