-9     -     41
UN15977        --> ..........GGGAACATTCAAGCTACCGCCGGCGAAAATGGTTTTCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539944       <-- ...........GGAACATTCAAGCTACCGCCGGCGAAAATGGTTTTCAAG
FD945608       <-- ggactttgcttcGAACATTCAAGCTACCGCCGGCGAAAATGGTTTTCAAG
EV543929       <-- ..............ggATTCAAGCTACCGCCGGCGAAAATGGTTTTCAAG
EY918227       <-- ..............ggATTCAAGCTACCGCCGGCGAAAATGGTTTTCAAG
EW728350       <-- ..................................................
EY935067       <-- ..................................................
EY919754       <-- ..................................................
EX752812       <-- ..................................................
EV566106       --> ..........GGGAACATTCAAGCTACCGCCGGCGAAAATGGTTTTCAAG
EW724512       --> .........gGGGAACATTCAAGCTACCGCCGGCGAAAATGGTTTTCAAG
EY898150       --> ..........GGGAACATTCAAGCTACCGCCGGCGAAAATGGTTTTCAAG
EY924038       --> ..........GGGAACATTCAAGCTACCGCCGGCGAAAATGGTTTTCAAG
EY939054       --> ..........GGGAACATTCAAGCTACCGCCGGCGAAAATGGTTTTCAAG
EV535208       --> ...........GGAACATTCAAGCTACCGCCGGCGAAAATGGTTTTCAAG
FD950049       --> ggactctgcttcGAACATTCAAGCTACCGCCGGCGAAAATGGTTTTCAAG
EV548211       --> ..............ggATTCAAGCTACCGCCGGCGAAAATGGTTTTCAAG
EY922229       --> ..............ggATTCAAGCTACCGCCGGCGAAAATGGTTTTCAAG
EX749014       --> ..................................................

               41     -     91
UN15977        --> AGGTACGTCGAGATCGGGAGAGTCGCTCTTGTGAACTATGGAAAAGACCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539944       <-- AGGTACGTCGAGATCGGGAGAGTCGCTCTTGTGAACTATGGAAAGGACCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD945608       <-- AGGTACGTCGAGATCGGGAGAGTTGCTCTTGTGAACTATGGAAAAGACCA  Raphanus sativus cv Early Scarlet Globe
EV543929       <-- AGGTACGTCGAGATCGGGAGAGTCGCTCTTGTGAACTATGGAAAGGACCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY918227       <-- AGGTACGTCGAGATCGGGAGAGTCGCGCTTGTGAACTATGGAAAGGACCA  Raphanus raphanistrum subsp. landra
EW728350       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY935067       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY919754       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX752812       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV566106       --> AGGTACGTCGAGATCGGGGGAGTCGCTCTTGTGAACTATGGAAAAGACCA  Raphanus raphanistrum subsp. landra
EW724512       --> AGGTACGTCGAGATCGGGAGAGTTGCTCTTGTGAACTATTGAAAAGACCA  Raphanus sativus cv Early Scarlet Globe
EY898150       --> AGGTACGTCGAGATCGGGAGAGTCGCTCTTGTGAACTATGGAAAAGACCA  Raphanus raphanistrum subsp. maritimus
EY924038       --> AGGTACGTCGAGATCGGGAGAGTCGCTCTTGTGAACTATGGAAAAGACCA  Raphanus raphanistrum subsp. landra
EY939054       --> AGGTACGTCGAGATCGGGAGAGTTGCTCTTGTGAACTATGGAAAAGACCA  Raphanus sativus cv Early Scarlet Globe
EV535208       --> AGGTACGTCGAGATCGGGAGAGTCGCTCTTGTGAACTATGGAAAGGACCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD950049       --> AGGTACGTCGAGATCGGGAGAGTTGCTCTTGTGAACTATGGAAAAGACCA  Raphanus sativus cv Early Scarlet Globe
EV548211       --> AGGTACGTCGAGATCGGGAGAGTCGCTCTTGTGAACTATGGAAAGGACCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY922229       --> AGGTACGTCGAGATCGGGAGAGTCGCGCTTGTGAACTATGGAAAGGACCA  Raphanus raphanistrum subsp. landra
EX749014       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               91     -    141
UN15977        --> TGGAAAGCTCGTCGTCATCGTCGACGTCGTCGACCAGAACAGGGCTTTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539944       <-- TGGAAAGCTCGTCGTCATCGTCGGCGTCGTGGACCAGAACAGGGCTTTAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD945608       <-- TGGAAAGCTCGTCGTCATCGTTGACGTCGTCGACCAGAACAGGGCTTTAG  Raphanus sativus cv Early Scarlet Globe
EV543929       <-- TGGAAAGCTCGTCGTCATCGTCGACGTCGTGGACCAGAACAGGGCTTTAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY918227       <-- TGGAAAGCTCGTCGTCATCGTCGACGTCGTGGACCAGAACAGGGCTTTGG  Raphanus raphanistrum subsp. landra
EW728350       <-- ..........................TCGTCGACCAGAACAGGGCTTTAG  Raphanus sativus cv Early Scarlet Globe
EY935067       <-- ..........................TCGTCGACCAGAACAGGGCTTTAG  Raphanus sativus cv Early Scarlet Globe
EY919754       <-- ..............................CGACCAGAACAGGGCTTTAG  Raphanus raphanistrum subsp. landra
EX752812       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV566106       --> TGGAAAGCTCGTCGTCATCGTCGACGTCGTCGACCAGAACAGGGCTTTAG  Raphanus raphanistrum subsp. landra
EW724512       --> TGGAAAGCTCGTCGTCATCGTCGACGTCGTCGACCAGAACAGGGCTTTAG  Raphanus sativus cv Early Scarlet Globe
EY898150       --> TGGAAAGCTCGTCGTCATCGTCGACGTCGTCGACCAGAACAGGGCTTTAG  Raphanus raphanistrum subsp. maritimus
EY924038       --> TGGAAAGCTCGTCGTCATCGTCGACGTCGTCGACCAGAACAGGGCTTTAG  Raphanus raphanistrum subsp. landra
EY939054       --> TGGAAAGCTCGTCGTCATCGTCGACGTCGTCGACCAGAACAGGGCTTTAG  Raphanus sativus cv Early Scarlet Globe
EV535208       --> TGGAAAGCTCGTCGTCATCGTCGGCGTCGTGGACCAGAACAGGGCTTTAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD950049       --> TGGAAAGCTCGTCGTCATCGTTGACGTCGTCGACCAGAACAGGGCTTTAG  Raphanus sativus cv Early Scarlet Globe
EV548211       --> TGGAAAGCTCGTCGTCATCGTCGACGTCGTGGACCAGAACAGGGCTTTAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY922229       --> TGGAAAGCTCGTCGTCATCGTCGACGTCGTGGACCAGAACAGGGCTTTGG  Raphanus raphanistrum subsp. landra
EX749014       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               141    -    191
UN15977        --> TAGATGCCCCTGACATGGAGAGGATCCAGATGAACTTCAAGAGGTTGTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539944       <-- TAGATGCCCCTGACATGGAGAGTATCCAGATGAACTTCAAGAGGTTGTCT
FD945608       <-- TAGATGCCCCTGACATGGAGAGGATCCAGATGAACTTCAAGAGGTTGTCT
EV543929       <-- TAGATGCCCCTGACATGGAGAGGATCCAGATGAACTTCAAGAGGTTGTCT
EY918227       <-- TAGATGCCCCTGACATGGAGAGGATCCAGATGAACTTCAAGAGGTTGTCT
EW728350       <-- TAGATGCCCCTGACATGGAGAGGATCCAGATGAACTTCAAGAGGTTGTCT
EY935067       <-- TAGATGCCCCTGACATGGAGAGGATCCAGATGAACTTCAAGAGGTTGTCT
EY919754       <-- TAGATGCCCCTGACATGGAGAGGATCCAGATGAACTTCAAGAGGTTGTTT
EX752812       <-- ......CCCCTGACATGGAGAGGATCCAGATGAACTTCAAGAGGTTGTCT
EV566106       --> TAGATGCCCCTGACACGGAGAGGATCCAGATGAACTTCGAGAGGTTGTCT
EW724512       --> TAGATGCCCCTGACATGGAGAGGATCCAGATGAACTTCAAGAGGTTGTCT
EY898150       --> TAGATGCCCCTGACATGGAGAGGATCCAGATGAACTTCAAGAGGTTGTCT
EY924038       --> TAGATGCCCCTGACATGGAGAGGATCCAGATGAACTTCAAGAGGTTGTCT
EY939054       --> TAGATGCCCCTGACATGGAGAGGATCCAGATGAACTTCAAGAGGTTGTCT
EV535208       --> TAGATGCCCCTGACATGGAGAGTATCCAGATGAACTTCAAGAGGTTGTCT
FD950049       --> TAGATGCCCCTGACATGGAGAGGATCCAGATGAACTTCAAGAGGTTGTCT
EV548211       --> TAGATGCCCCTGACATGGAGAGGATCCAGATGAACTTCAAGAGGTTGTCT
EY922229       --> TAGATGCCCCTGACATGGAGAGGATCCAGATGAACTTCAAGAGGTTGTCT
EX749014       --> ......CCCCTGACATGGAGAGGATCCAGATGAACTTCAAGAGGTTGTCT

               191    -    241
UN15977        --> CTTACTGACATCGTGATCGAGATCAACCGAGTGCCTAAGAAGAAGGCATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539944       <-- CTTACTGACATCGTGATCGAGATCAACCGAGTGCCTAAGAAGAAGGCATT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD945608       <-- CTTACTGACATCGTGATCGAGATCAACCGAGTGCCTAAGAAGAAGGCATT  Raphanus sativus cv Early Scarlet Globe
EV543929       <-- CTTACTGACATCGTGATCGAGATCAACCGAGTGCCTAAGAAGAAGGCATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY918227       <-- CTCACTGACATCGTTATCGAAATCAACCGAGTGCCTAAGAAGAAGGCTTT  Raphanus raphanistrum subsp. landra
EW728350       <-- CTTACTGACATCGTGATCGAGATCAACCGAGTGCCTAAGAAGAAGGCATT  Raphanus sativus cv Early Scarlet Globe
EY935067       <-- CTTACTGACATCGTGATCGAGATCAACCGAGTGCCTAAGAAGAAGGCATT  Raphanus sativus cv Early Scarlet Globe
EY919754       <-- TTTACTGACATCGTGATCGAGATCAACCGAGTTCCAAAGAAGAAGGCATT  Raphanus raphanistrum subsp. landra
EX752812       <-- CTTACTGACATCGTGATCGAGATCAACCGAGTTCCAAAGAAGAAGGCATT  Raphanus raphanistrum subsp. maritimus
EV566106       --> CTTACTGACATCGTGATCGAGATCAACCGAGTTCCAAAGAAGAAGGCATT  Raphanus raphanistrum subsp. landra
EW724512       --> CTTACTGACATCGTGATCGAGATCAACCGAGTGCCTAAGAAGAAGGCATT  Raphanus sativus cv Early Scarlet Globe
EY898150       --> CTTACTGACATCGTGATCGAGATCAACCGAGTTCCAAAGAAGAAGGCATT  Raphanus raphanistrum subsp. maritimus
EY924038       --> CTTACTGACATCGTGATCGAGATCAACCGAGTTCCAAAGAAGAAGGCATT  Raphanus raphanistrum subsp. landra
EY939054       --> CTTACTGACATCGTGATCGAGATCAACCGAGTGCCTAAGAAGAAGGCATT  Raphanus sativus cv Early Scarlet Globe
EV535208       --> CTTACTGACATCGTGATCGAGATCAACCGAGTGCCTAAGAAGAAGGCATT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD950049       --> CTTACTGACATCGTGATCGAGATCAACCGAGTGCCTAAGAAGAAGGCATT  Raphanus sativus cv Early Scarlet Globe
EV548211       --> CTTACTGACATCGTGATCGAGATCAACCGAGTGCCTAAGAAGAAGGCATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY922229       --> CTCACTGACATCGTTATCGAAATCAACCGAGTGCCTAAGAAGAAGGCTTT  Raphanus raphanistrum subsp. landra
EX749014       --> CTTACTGACATCGTGATCGAGATCAACCGAGTTCCAAAGAAGAAGGCATT  Raphanus raphanistrum subsp. maritimus

               241    -    291
UN15977        --> GATTGAGGCCATGGAGAAAGCTGACGTGAAGAACAAGTGGGAGAAGAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539944       <-- GATTGAGGCCATGGAGAAAGCTGACGTGAAGAACAAGTGGGAGAAGAGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD945608       <-- GATTGAGGCCATGGAGAAAGCTGACGTGAAGAACAAGTGGGAGAAGAGCT  Raphanus sativus cv Early Scarlet Globe
EV543929       <-- GATTGAGGCCATGGAGAAAGCTGACGTGAAGAACAAGTGGGAGAAGAGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY918227       <-- GATTGAGGCCATGGAGAAAGCTGACGTGAAGAACAAGTGGGAGAAGAGCT  Raphanus raphanistrum subsp. landra
EW728350       <-- GATTGAGGCCATGGAGAAAGCTGACGTGAAGAACAAGTGGGAGAAGAGCT  Raphanus sativus cv Early Scarlet Globe
EY935067       <-- GATTGAGGCCATGGAGAAAGCTGACGTGAAGAACAAGTGGGAGAAGAGCT  Raphanus sativus cv Early Scarlet Globe
EY919754       <-- GATTGAGGCCATGGAGAAAGCTGACGCGAAGAACAAGTGGGAGAAGAGCT  Raphanus raphanistrum subsp. landra
EX752812       <-- GATTGAGGCCATGGAGAAAGCTGACGCGAAGAACAAGTGGGAGAAGAGCT  Raphanus raphanistrum subsp. maritimus
EV566106       --> GATTGAGGCCATGGAGAAAGCTGACGCGAAGAACAAGTGGGAGAAGAGCT  Raphanus raphanistrum subsp. landra
EW724512       --> GATTGAGGCCATGGAGAAAGCTGACGTGAAGAACAAGTGGGAGAAGAGCT  Raphanus sativus cv Early Scarlet Globe
EY898150       --> GATTGAGGCCATGGAGAAAGCTGACGCGAAGAACAAGTGGGGGAAGAGCT  Raphanus raphanistrum subsp. maritimus
EY924038       --> GATTGAGGCCATGGAGAAAGCTGACGCGAAGAACAAGTGGGAGAAGAGCT  Raphanus raphanistrum subsp. landra
EY939054       --> GATTGAGGCCATGGAGAAAGCTGACGTGAAGAACAAGTGGGAGAAGAGCT  Raphanus sativus cv Early Scarlet Globe
EV535208       --> GATTGAGGCCATGGAGAAAGCTGACGTGAAGAACAAGTGGGAGAAGAGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD950049       --> GATTGAGGCCATGGAGAAAGCTGACGTGAAGAACAAGTGGGAGAAGAGCT  Raphanus sativus cv Early Scarlet Globe
EV548211       --> GATTGAGGCCATGGAGAAAGCTGACGTGAAGAACAAGTGGGAGAAGAGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY922229       --> GATTGAGGCCATGGAGAAAGCTGACGTGAAGAACAAGTGGGAGAAGAGCT  Raphanus raphanistrum subsp. landra
EX749014       --> GATTGAGGCCATGGAGAAAGCTGACGCGAAGAACAAGTGGGAGAAGAGCT  Raphanus raphanistrum subsp. maritimus

               291    -    341
UN15977        --> CCTGGGGTAGGAAGCTCATCGTTCAGAAGCGTAGGGCTAGCCTTAATGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539944       <-- CATGGGGTAGGAAGCTCATCGTTCAGAAGCGTAGGGCTAGCCTCAATGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD945608       <-- CCTGGGGTAGGAAGCTCATCGTTCAGAAGCGTAGGGCTAGCCTTAATGAT  Raphanus sativus cv Early Scarlet Globe
EV543929       <-- CCTGGGGTAGGAAGCTCATCGTTCAGAAGCGTAGGGCCAGCCTTAATGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY918227       <-- CATGGGGTAGGAAGCTCATCGTTCAGAAGCGTAGGGCTAGCCTCAACGAT  Raphanus raphanistrum subsp. landra
EW728350       <-- CCTGGGGTAGGAAGCTCATCGTTCAGAAGCGTAGGGCTAGCCTTAATGAT  Raphanus sativus cv Early Scarlet Globe
EY935067       <-- CCTGGGGTAGGAAGCTCATCGTTCAGAAGCGTAGGGCTAGCCTTAATGAT  Raphanus sativus cv Early Scarlet Globe
EY919754       <-- CCTGGGGTAGGAAGCTCATCGTTCAGAAGGGTAGGGCTAGCCTTAATGAT  Raphanus raphanistrum subsp. landra
EX752812       <-- CCTGGGGTAGGAAGCTCATCGTTCAGAAGCGTAGGGCTAGCCTTAATGAT  Raphanus raphanistrum subsp. maritimus
EV566106       --> CCTGGGGTAGGAAGCTCATCGTTCAGAAGCGTAGGGCTAGCCTTAATGAT  Raphanus raphanistrum subsp. landra
EW724512       --> CCTGGGGTAGGAAGCTCATCGTTCAGAAGCGTAGGGCTAGCCTTAATGAT  Raphanus sativus cv Early Scarlet Globe
EY898150       --> CCTGGGGTAGGAAGCTCATCGTTCAGAAGCGTAGGGCTAGCCTTAATGAT  Raphanus raphanistrum subsp. maritimus
EY924038       --> CCTGGGGTAGGAAGCTCATCGTTCAGAAGCGTAGGGCTAGCCTTAATGAT  Raphanus raphanistrum subsp. landra
EY939054       --> CCTGGGGTAGGAAGCTCATCGTTCAGAAGCGTAGGGCTAGCCTTAATGAT  Raphanus sativus cv Early Scarlet Globe
EV535208       --> CATGGGGTAGGAAGCTCATCGTTCAGAAGCGTAGGGCTAGCCTCAATGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD950049       --> CCTGGGGTAGGAAGCTCATCGTTCAGAAGCGTAGGGCTAGCCTTAATGAT  Raphanus sativus cv Early Scarlet Globe
EV548211       --> CCTGGGGTAGGAAGCTCATCGTTCAGAAGCGTAGGGCCAGCCTTAATGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY922229       --> CATGGGGTAGGAAGCTCATCGTTCAGAAGCGTAGGGCTAGCCTCAACGAT  Raphanus raphanistrum subsp. landra
EX749014       --> CCTGGGGTAGGAAGCTCATCGTTCAGAAGCGTAGGGCTAGCCTTAATGAT  Raphanus raphanistrum subsp. maritimus

               341    -    391
UN15977        --> TTTGACAGATTCAAGATCATGTTGGCCAAGATCAAGAAAGCTGGTGTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539944       <-- TTTGACAGATTCAAGATCATGTTGGCCAAAATCAAGAAAGCTGGTGTTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD945608       <-- TTCGACAGATTCAAGATCATGTTGGCCAAGATCAAGAAAGCTGGTGTTGT  Raphanus sativus cv Early Scarlet Globe
EV543929       <-- TTTGACAGATTCAAGATCATGTTGGCCAAGATCAAGAAAGCTGGTGTCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY918227       <-- TTTGACAGATTCAAGATCATGTTGGCCAAAATCAAGAAAGCTGGTGTTGT  Raphanus raphanistrum subsp. landra
EW728350       <-- TTCGACAGATTCAAGATCATGTTGGCCAAGATCAAGAAAGCTGGTGTTGT  Raphanus sativus cv Early Scarlet Globe
EY935067       <-- TTCGACAGATTCAAAATCATGTTGGCCAAGATCAAGAAAGCTGGTGTTGT  Raphanus sativus cv Early Scarlet Globe
EY919754       <-- TTTGACAGATTCAAGATCATGTTGGCCAAGATCAAGAAAGCTGGTGTTGT  Raphanus raphanistrum subsp. landra
EX752812       <-- TTTGACAGATTCAAGATCATGTTGGCCAAGATCAAGAAAGCTGGTGTTGT  Raphanus raphanistrum subsp. maritimus
EV566106       --> TTTGACAGATTCAAGATCATGTTGGCCAAGATCAAGAAAGCTGGTGTTGT  Raphanus raphanistrum subsp. landra
EW724512       --> TTCGACAGATTCAAGATCATGTTGGCCAAGATCAAGAAAGCTGGTGTTGT  Raphanus sativus cv Early Scarlet Globe
EY898150       --> TTTGACAGATTCAAGATCATGTTGGCCAAGATCAAGAAAGCTGGTGTTGT  Raphanus raphanistrum subsp. maritimus
EY924038       --> TTTGACAGATTCAAGATCATGTTGGCCAAGATCAAGAAAGCTGGTGTTGT  Raphanus raphanistrum subsp. landra
EY939054       --> TTCGACAGATTCAAAATCATGTTGGCCAAGATCAAGAAAGCTGGTGTTGT  Raphanus sativus cv Early Scarlet Globe
EV535208       --> TTTGACAGATTCAAGATCATGTTGGCCAAAATCAAGAAAGCTGGTGTTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD950049       --> TTCGACAGATTCAAGATCATGTTGGCCAAGATCAAGAAAGCTGGTGTTGT  Raphanus sativus cv Early Scarlet Globe
EV548211       --> TTTGACAGATTCAAGATCATGTTGGCCAAGATCAAGAAAGCTGGTGTCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY922229       --> TTTGACAGATTCAAGATCATGTTGGCCAAAATCAAGAAAGCTGGTGTTGT  Raphanus raphanistrum subsp. landra
EX749014       --> TTTGACAGATTCAAGATCATGTTGGCCAAGATCAAGAAAGCTGGTGTTGT  Raphanus raphanistrum subsp. maritimus

               391    -    441
UN15977        --> CAGGCAAGAACTTGCTAAACTCAAGAAGGAGATCACCGCCTGATCATATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539944       <-- CAGGCAAGAACTTGCTAAACTCAAGAAGGAGATCACCGCCTGATCATATT
FD945608       <-- CAGGCAAGAACTTGCTAAACTCAAGAAGGAGATCACCGCCTGATCATATT
EV543929       <-- CAGGCAAGAACTTGCTAAACTCAAGAAGGAGATCACCGCCTGATCATATT
EY918227       <-- CAGGCAAGAACTTGCTAAACTCAAGAAGGAGATCACCGCCTGATCATATT
EW728350       <-- CAGGCAAGAACTTGCTAAACTCAAGAAGGAGATCACCGCCTGATCATATT
EY935067       <-- CAGGCAAGAACTTGCTAAACTCAAGAAGGAGATCACCGCCTGATCATATC
EY919754       <-- CAGGCAAGAACTTGCTAAACTCAAGAAGGAGATCACCGCCTGATCATATT
EX752812       <-- CAGGCAAGAACTTGCTAAACTCAAGAAG......................
EV566106       --> CAGGCAAGAACTTGCTAAACTCAAGAAGGAGATCACCGCCTGATCATATT
EW724512       --> CAGGCAAGAACTTGCTAAACTCAAGAAGGAGATCACCGCCTGATCATATT
EY898150       --> CAGGCAAGAACTTGCTAAACTCAAGAAGGAGATCACCGCCTGATCATATT
EY924038       --> CAGGCAAGAACTTGCTAAACTCAAGAAGGAGATCACCGCCTGATCATATT
EY939054       --> CAGGCAAGAACTTGCTAAACTCAAGAAGGAGATCACCGCCTGATCATATC
EV535208       --> CAGGCAAGAACTTGCTAAACTCAAGAAGGAGATCACCGCCTGATCATATT
FD950049       --> CAGGCAAGAACTTGCTAAACTCAAGAAGGAGATCACCGCCTGATCATATT
EV548211       --> CAGGCAAGAACTTGCTAAACTCAAGAAGGAGATCACCGCCTGATCATATT
EY922229       --> CAGGCAAGAACTTGCTAAACTCAAGAAGGAGATCACCGCCTGATCATATT
EX749014       --> CAGGCAAGAACTTGCTAAACTCAAGAAGGAGATCACCGCCTGATCATATT

               441    -    491
UN15977        --> GAGGATTATCCGCAACTCTGTTTTTCTATTTCGAATTGGTAGTTAGTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539944       <-- GAGGATTATCCGCAACTCTGTTTTTCTATTTCGAATTGGTAGTTAGTGTT
FD945608       <-- GAGGATTATCCGCAACTCTGTTTTTCTATTTCGAATTGGTAGTTAGTGTT
EV543929       <-- GAGGATTATCCGCAACTCTGTTTTTCTATTTCGAATTGGTAGTTAGTGTT
EY918227       <-- GAGGATTATCCGCAACTCTGTTTTTCTATTTCGAATTGGTAGTTAGTGTT
EW728350       <-- GAGGATTATCCGCAACTCTGTTTTTCTATTTCGAATTGGTAGTTAGTGTT
EY935067       <-- GAGGATTATCCGCAACTCTGTTTTTCTATTTCGAATTGGTAGTTAGTGTT
EY919754       <-- GAGGATTATCCGCAACTTTGTTTTTTTATTTTGAATTGGTAGTTAGTGTT
EX752812       <-- ..................................................
EV566106       --> GAGGATTATCCGCAACTCTGTTTTTCTATTTCGAATTGGTAGTTAGTGTT
EW724512       --> GAGGATTATCCGCAACTCTGTTTTTCTATTTCGAATTGGTAGTTAGTGTT
EY898150       --> -AGGATTATCCGCAACTCTGTTTTTCTATTTCGAATTGGTAGTTAGTGTT
EY924038       --> GAGGATTATCCGCAACTCTGTTTTTCTATTTCGAATTGGTAGTTAGTGTT
EY939054       --> GAGGATTATCCGCAACTCTGTTTTTCTATTTCGAATTGGTAGTTAGTGTT
EV535208       --> GAGGATTATCCGCAACTCTGTTTTTCTATTTCGAATTGGTAGTTAGTGTT
FD950049       --> GAGGATTATCCGCAACTCTGTTTTTCTATTTCGAATTGGTAGTTAGTGTT
EV548211       --> GAGGATTATCCGCAACTCTGTTTTTCTATTTCGAATTGGTAGTTAGTGTT
EY922229       --> GAGGATTATCCGCAACTCTGTTTTTCTATTTCGAATTGGTAGTTAGTGTT
EX749014       --> GAGGATTATCCGCAACTCTGTTTTTCTATTTCGAATTGGTAGTTAGTGTT

               491    -    541
UN15977        --> TTT--GAAAGTGGCAAACATCATTATCTACTTTATTGTCGGATGTTAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539944       <-- TTT--GAAAGTGGCAAACATCATTATCTACTTTGTTGTCGGATGTTAATT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD945608       <-- TTTTTGAAAGTGGCAAACATCATTATCTACTTTATTGTCGGATGTTAATT  Raphanus sativus cv Early Scarlet Globe
EV543929       <-- TTT--GAAAGTGGCAAACATCATTATCTACTTTATTGTCGGATGTTAATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY918227       <-- TTT--GAAAGTGGCAAACATCATTATCTACTTTATTGTCGGATGTTAATT  Raphanus raphanistrum subsp. landra
EW728350       <-- TTTTTGAAAGTGGCAAACATCATTATCTACTTTATTGTCGGATGTTAATT  Raphanus sativus cv Early Scarlet Globe
EY935067       <-- TTTTTGAAAGTGGCAAACATCATTATCTACTTTATTGTCGGATGTTAATT  Raphanus sativus cv Early Scarlet Globe
EY919754       <-- TTT--GAAAGTGGCAAACATCATTATTTACTTTATTGTCGGATGTTAATT  Raphanus raphanistrum subsp. landra
EX752812       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV566106       --> TTT--GAAAGTGGCAAACATCATTATCTACTTTATTGTCGGATGTTACTT  Raphanus raphanistrum subsp. landra
EW724512       --> TTTTTGAAAGTGGCAAACATCATTATCTACTTTATTGTCGGATGTTAATT  Raphanus sativus cv Early Scarlet Globe
EY898150       --> TTT--GAAAGTGGCAAACATCATTATCTACTTTATTGTCGGATGTTAATT  Raphanus raphanistrum subsp. maritimus
EY924038       --> TTT--GAAAGTGGCAAACATCATTATCTACTTTATTGTCGGATGTTAATT  Raphanus raphanistrum subsp. landra
EY939054       --> TTTTTGAAAGTGGCAAACATCATTATCTACTTTATTGTCGGATGTTAATT  Raphanus sativus cv Early Scarlet Globe
EV535208       --> TTT--GAAAGTGGCAAACATCATTATCTACTTTGTTGTCGGATGTTAATT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD950049       --> TTTTTGAAAGTGGCAAACATCATTATCTACTTTATTGTCGGATGTTAATT  Raphanus sativus cv Early Scarlet Globe
EV548211       --> TTT--GAAAGTGGCAAACATCATTATCTACTTTATTGTCGGATGTTAATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY922229       --> TTT--GAAAGTGGCAAACATCATTATCTACTTTATTGTCGGATGTTAATT  Raphanus raphanistrum subsp. landra
EX749014       --> TTT--GAAAGTGGCAAACATCATTATCTACTTTATTGTCGGATGTTAATT  Raphanus raphanistrum subsp. maritimus

               541    -    591
UN15977        --> TCAATTTTGAATGAAACCTTGTTTGGAAGACTTCATTTTGTTGTTTGGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539944       <-- TCAATTTTGAATGAAACCTTGTTTGGAAGACTcc................
FD945608       <-- TCA...............................................
EV543929       <-- TCA...............................................
EY918227       <-- TCA...............................................
EW728350       <-- TCAATTTTGAATGAAACCTTGTTTGGAAGACTTCATTTTGTTGTTTGGTC
EY935067       <-- TCAATTTTGAATGAAACCTTGTTTGGAAGACTTCATTTTGTTGTTTGGTC
EY919754       <-- TCA...............................................
EX752812       <-- ..................................................
EV566106       --> TCA...............................................
EW724512       --> TCAATTTTGAATGAAACCTTGTTTGGAAGACTTCATTTTGTTGTTTGGTC
EY898150       --> TCA...............................................
EY924038       --> TCA...............................................
EY939054       --> TCAATTTTGAATGAAACCTTGTTTGGAAGACTTCATTTTGTTGTTTGGTC
EV535208       --> TCAATTTTGAATGAAACCTTGTTTGGAAGACTcc................
FD950049       --> TCA...............................................
EV548211       --> TCA...............................................
EY922229       --> TCA...............................................
EX749014       --> TCAATTTTGAATGAAACCTTGTTTGGAAGACTcc................

               591    -    641
UN15977        --> GTACTCTCTTCACTAAAAACATGTTTATTTTCCCATCACGCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539944       <-- ...........................................
FD945608       <-- ...........................................
EV543929       <-- ...........................................
EY918227       <-- ...........................................
EW728350       <-- GTACTCTCTTCACTAAAAACATGTTTATTTTCCCATCACGCAC
EY935067       <-- GTACTCTCTTCACTAAAAACATGTTTATTTTCCC.........
EY919754       <-- ...........................................
EX752812       <-- ...........................................
EV566106       --> ...........................................
EW724512       --> GTACTCTCTTCACT.............................
EY898150       --> ...........................................
EY924038       --> ...........................................
EY939054       --> GTACTCTCTTCACTAAAAACATGTTTATTTTCCC.........
EV535208       --> ...........................................
FD950049       --> ...........................................
EV548211       --> ...........................................
EY922229       --> ...........................................
EX749014       --> ...........................................