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Alignment for radish unigene UN15995

               1      -     51
UN15995        --> GGGCCTAGCCAAGTATCTCATCTTTCTCCTTCTTTCTTTCGTAAATAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903289       <-- ..................................................
EV571620       <-- ..................................................
EY901644       <-- ..................................................
EY894115       <-- ..................................................
EY911211       <-- ..................................................
EY907313       --> GGGCCTAGCCAAGTATCTCATCTTTCTCCTTCTTTCTTTCGTAAATAAAA
EY905146       --> ..................................................
EY897923       --> ..................................................
EV566501       --> ..................................................

               51     -    101
UN15995        --> TCACACATCACTCACCTCTACTCCTCAATCAGTATCTTCAAAATATATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903289       <-- ..................................................
EV571620       <-- ..................................................
EY901644       <-- ..................................................
EY894115       <-- ..................................................
EY911211       <-- ..................................................
EY907313       --> TCACACATCACTCACCTCTACTCCTCAATCAGTATCTTCAAAATATATTT
EY905146       --> ..................................................
EY897923       --> ..................................................
EV566501       --> ..................................................

               101    -    151
UN15995        --> TGGAGCGTGAGAGACAAATTTTGTTTCATCTTTACGATTTCACCAGAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903289       <-- ..................................................
EV571620       <-- ..................................................
EY901644       <-- ..................................................
EY894115       <-- ..................................................
EY911211       <-- ..................................................
EY907313       --> TGGAGCGTGAGAGACAAATTTTGTTTCATCTTTACGATTTCACCAGAGAT
EY905146       --> ..................................................
EY897923       --> ..................................................
EV566501       --> ..................................................

               151    -    201
UN15995        --> GATAAAGTTTCAAGGACTCGTTTCATCGACCTTTGTCCTCTTACTGACCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903289       <-- ..................................................
EV571620       <-- ..................................................
EY901644       <-- ..................................................
EY894115       <-- ..................................................
EY911211       <-- ..................................................
EY907313       --> GATAAAGTTTCAAGGACTCGTTTCATCGACCTTTGTCCTCTTACTGACCC
EY905146       --> ..................................................
EY897923       --> ..................................................
EV566501       --> ..................................................

               201    -    251
UN15995        --> TCTCTCTGTGTTCTGCCGAAAATGATGTTTTTTCTTCCACAGGGTATGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903289       <-- ..................................................
EV571620       <-- ..................................................
EY901644       <-- ..................................................
EY894115       <-- ..................................................
EY911211       <-- ..................................................
EY907313       --> TCTCTCTGTGTTCTGCCGAAAATGATGTTTTTTCTTCCACAGGGTATGTC
EY905146       --> ..................................................
EY897923       --> ..................................................
EV566501       --> ..................................................

               251    -    301
UN15995        --> CAAATTGAGTGCTTGAGAGTACCGCCGTTGGAGTTCGCCGGAGCGGCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903289       <-- ..................................................
EV571620       <-- ..................................................
EY901644       <-- ..................................................
EY894115       <-- ..................................................
EY911211       <-- ..................................................
EY907313       --> CAAATTGAGTGCTTGAGAGTACCGCCGTTGGAGTTCGCCGGAGCGGCAAA
EY905146       --> ..................................................
EY897923       --> ..................................................
EV566501       --> ..................................................

               301    -    351
UN15995        --> AACCGCCTTCGACTCAGTCAGGAAAGCCGGAGCTTTAGTGTCGAAATTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903289       <-- ..................................................
EV571620       <-- ..................................................
EY901644       <-- ..................................................
EY894115       <-- ..................................................
EY911211       <-- ..................................................
EY907313       --> AACCGCCTTCGACTCAGTCAGGAAAGCCGGAGCTTTAGTGTCGAAATTCG
EY905146       --> ..................................................
EY897923       --> ..................................................
EV566501       --> ..................................................

               351    -    401
UN15995        --> ACAAGAAATTTGGGAACTCACGTGTGGGCCATGCCATTCTTGATTGCCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903289       <-- ..................................................
EV571620       <-- ..................................................
EY901644       <-- ..................................................
EY894115       <-- ..................................................
EY911211       <-- ..................................................
EY907313       --> ACAAGAAATTTGGGAACTCACGTGTGGGCCATGCCATTCTTGATTGCCTT
EY905146       --> ..................................................
EY897923       --> ..................................................
EV566501       --> ..................................................

               401    -    451
UN15995        --> GATCTTCTTGATTCTGCCTCTGAAGAGCTTTCTTGGATTATATCTGCCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903289       <-- ..................................................
EV571620       <-- ..................................................
EY901644       <-- ..................................................
EY894115       <-- ..................................................
EY911211       <-- ..................................................
EY907313       --> GATCTTCTTGATTCTGCCTCTGAAGAGCTTTCTTGGATTATATCTGCCTC
EY905146       --> ..................................................
EY897923       --> ..................................................
EV566501       --> ..................................................

               451    -    501
UN15995        --> TCAGAACCCCAACGGTAAAGACAATAGTACAGGAGACGTGGCTTCGGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903289       <-- ..................................................
EV571620       <-- ..................................................
EY901644       <-- ..................................................
EY894115       <-- ..................................................
EY911211       <-- ..................................................
EY907313       --> TCAGAACCCCAACGGTAAAGACAATAGTACAGGAGACGTGGCTTCGGATC
EY905146       --> ..................................................
EY897923       --> ..................................................
EV566501       --> ..................................................

               501    -    551
UN15995        --> TAAGGACGTGGATAAGCGCCGCCCTTTCTAACCAGGACACCTGTCTTGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903289       <-- ..................................................
EV571620       <-- ..................................................
EY901644       <-- ..................................................
EY894115       <-- ..................................................
EY911211       <-- ..................................................
EY907313       --> TAAGGACGTGGATAAGCGCCGCCCTTTCTAACCAGGACACCTGTCTTGAC
EY905146       --> ..................................................
EY897923       --> ..................................................
EV566501       --> ..................................................

               551    -    601
UN15995        --> GGCTTCGAGGGCACTAATGGAATTGTCAAAAAAGTTGTGGCCGGTGGTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903289       <-- ..................................................
EV571620       <-- ..................................................
EY901644       <-- ..................................................
EY894115       <-- ..................................................
EY911211       <-- ..................................................
EY907313       --> GGCTTCGAGGGCACTAATGGAATTGTCAAAAAAGTTGTGGCCGGTGGTCT
EY905146       --> ..........................................GGTGGTCT
EY897923       --> ..................................................
EV566501       --> ..................................................

               601    -    651
UN15995        --> AAGCCAGGTCGGTAAAACCATCCGAAACCTACTAACAATGGTCCACTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903289       <-- ..................................................
EV571620       <-- ..................................................
EY901644       <-- ..................................................
EY894115       <-- ..................................................
EY911211       <-- ..................................................
EY907313       --> AAGCCAGGTCGGTAAAACCATCCGAAACCTACTAACAATGGTCCACTTTT
EY905146       --> AAGCCAGGTCGGTAAAACCATCCGAAACCTACTAACAATGGTCCACTTTT
EY897923       --> ..................................................
EV566501       --> ..................................................

               651    -    701
UN15995        --> CCTCCAAACCCAAACCTAAGCCCAATAGAGCCCACAAGACAACCACCGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903289       <-- ..................................................
EV571620       <-- ..................................................
EY901644       <-- ..................................................
EY894115       <-- ..................................................
EY911211       <-- ..................................................
EY907313       --> CCTCCAAACCCAAACCTAAGCCCAATAGAGCCCACA-GACAACCACCGGT
EY905146       --> CCTCCAAACCCAAACCTAAGCCCAATAGAGCCCACAAGACAACCACCGGT
EY897923       --> ..................................................
EV566501       --> ..................................................

               701    -    751
UN15995        --> CATAGCGGCTTCAGTAAGTTTCCCACATGGGTTAGACCCGGTGATCGGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903289       <-- ..................................................
EV571620       <-- ..................................................
EY901644       <-- ..................................................
EY894115       <-- ..................................................
EY911211       <-- ..................................................
EY907313       --> CATAGCGGCTTCAGTAAGTTTCCCACATGGGTTAGACCCGGTGATCGGAg
EY905146       --> CATAGCGGCTTCAGTAAGTTTCCCACATGGGTTAGACCCGGTGATCGGAA
EY897923       --> ..................................................
EV566501       --> ..................................................

               751    -    801
UN15995        --> GTTGCTACAAATTGATGGCTTATCAATAGCGGCCGATGCATTTGTAGCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903289       <-- ..................................................
EV571620       <-- ..................................................
EY901644       <-- ..................................................
EY894115       <-- ..................................................
EY911211       <-- ..................................................
EY907313       --> tgctacaga.........................................
EY905146       --> GTTGCTACAAATTGATGGCTTATCAATAGCGGCCGATGCATTTGTAGCAG
EY897923       --> ..................................................
EV566501       --> ..................................................

               801    -    851
UN15995        --> CAGATGGGACAGGGAACTTCACTACGATAAGCGAGGCGGTACTGGCCGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903289       <-- ..................................................
EV571620       <-- ..................................................
EY901644       <-- ..................................................
EY894115       <-- ..................................................
EY911211       <-- ..................................................
EY907313       --> ..................................................
EY905146       --> CAGATGGGACAGGGAACTTCACTACGATAAGCGAGGCGGTACTGGCCGCG
EY897923       --> ..................................................
EV566501       --> ..................................................

               851    -    901
UN15995        --> CCGGACTACAGTACAAAAAGATATGTGATACATGTGAAAAGAGGTATATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903289       <-- ..................................................
EV571620       <-- ..................................................
EY901644       <-- ..................................................
EY894115       <-- ..................................................
EY911211       <-- ..................................................
EY907313       --> ..................................................
EY905146       --> CCGGACTACAGTACAAAAAGATATGTGATACATGTGAAAAGAGGTATATA
EY897923       --> ..................................................
EV566501       --> ..................................................

               901    -    951
UN15995        --> TGTCGAGAATGTAGAGATTAAGAAGAAGAAATGGAACATTATGATGGTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903289       <-- ..................................................
EV571620       <-- ..................................................
EY901644       <-- ..................................................
EY894115       <-- ..................................................
EY911211       <-- ..................................................
EY907313       --> ..................................................
EY905146       --> TGTCGAGAATGTAGAGATTAAGAAGAAGAAATGGAACATTATGATGGTCG
EY897923       --> ..................................................
EV566501       --> ..................................................

               951    -   1001
UN15995        --> GTGACGGCATTGATGCCACCGTGATCACCGGCAACCGAAGTTTCATCGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903289       <-- ..................................................
EV571620       <-- ..................................................
EY901644       <-- ..................................................
EY894115       <-- ..................................................
EY911211       <-- ..................................................
EY907313       --> ..................................................
EY905146       --> GTGACGGCATTGATGCCACCGTGATCACCGGCAACCGAAGTTTCATCGAC
EY897923       --> ..............................ggAACCGAAGTTTCATCGAC
EV566501       --> ..................................................

               1001   -   1051
UN15995        --> GGTTGGACTACGTTCCGTTCTGCTACTTTTGCTGTGAGCGGGAGAGGATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903289       <-- .................................................T
EV571620       <-- ..................................................
EY901644       <-- ..................................................
EY894115       <-- ..................................................
EY911211       <-- ..................................................
EY907313       --> ..................................................
EY905146       --> GGTTGGACAACGTTCCGTTCTGCTACTTTTGCTGTGAGCGGGAGAGGATT
EY897923       --> GGTTGGACTACATTCCGTTCTGCTACTTTTGCTGTGAGCGGGAGAGGATT
EV566501       --> ..................................................

               1051   -   1101
UN15995        --> TCTCGCACGGGACATAACGTTTCAAAACACAGCAGGACCGGAAAAACATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903289       <-- TCTCGCACGGGACATAACGTTTCAAAACACAGCAGGACCGGAAAA-CATC
EV571620       <-- ..................................................
EY901644       <-- ..................................................
EY894115       <-- ..................................................
EY911211       <-- ..................................................
EY907313       --> ..................................................
EY905146       --> TCTCGCACGGGACATAACGTTTCA..........................
EY897923       --> TCTCGCACGGGACATAACGTTTCAAAACACAGCAGGACCGGAAAAACATC
EV566501       --> ..................................................

               1101   -   1151
UN15995        --> AGGCAGTTGCAATCCGGTCAGACTCGGATCTCGGAGTTTTTTACCGATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903289       <-- AAGCAGTTGCAATCCGGTCAGACTCGGATCTCGGAGTTTTT-ATCGATGT
EV571620       <-- .GGCAGTTGCAATCCGGTCAGACTCGGATCTCGGAGTTTTTTACCGATGT
EY901644       <-- ....................................TTTTTTATCGATGT
EY894115       <-- ..................................................
EY911211       <-- ..................................................
EY907313       --> ..................................................
EY905146       --> ..................................................
EY897923       --> AAGCAGTTGCAATCCGGTCAGACTCGGATCTCGGAGTTTTTTACCGATGT
EV566501       --> .GGCAGTTGCAATCCGGTCAGACTCGGATCTCGGAGTTTTTTACCGATGT

               1151   -   1201
UN15995        --> GCGATGAGAGGTTATCAAGATACTCTCTACGCCCACACAATGCGTCAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903289       <-- GCGATGAGAGGTTATCAAGATACTCTCTACGCCCACACAATGCGTCAATT
EV571620       <-- GCGATGAGAGGTTATCAAGATACTCTCTACGCCCACACAATGCGTCAATT
EY901644       <-- GCGATGAGAGGTTATCAAGATACTCTCTACGCCCACACAATGCGTCAATT
EY894115       <-- ..................................................
EY911211       <-- ..................................................
EY907313       --> ..................................................
EY905146       --> ..................................................
EY897923       --> GCGATGAGAGGTTATCAAGATACTCTCTACGCCCACACAATGCGTCAATT
EV566501       --> GCGATGAGAGGTTATCAAGATACTCTCTACGCCCACACAATGCGTCAATT

               1201   -   1251
UN15995        --> CTTTAGAGAATGCATTATAACGGGCACCGTGGATTTCATGTTTGGAGACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903289       <-- CTTTAGAGAATGCATTATAACAGGCACCGTGGATTTCATGTTTGGAGACG
EV571620       <-- CTTTAGAGAATGCATTATAACGGGCACCGTGGATTTCATGTTTGGAGACG
EY901644       <-- CTTTAGAGAATGCATTATAACAGGCACCGTGGATTTCATGTTTGGAGACG
EY894115       <-- .....GAGAATGCGTTATAACGGGCACCGTGGATTTCATGTTTGGAGACG
EY911211       <-- ..................AACGGGCACCGTAGATTTCATGTCTGTAGACG
EY907313       --> ..................................................
EY905146       --> ..................................................
EY897923       --> CTTTAGAGAATGCGTTATAACGGGCACCGTGGATTTCATGTTTGGAGACG
EV566501       --> CTTTAGAGAATGCATTATAACGGGCACCGTGGATTTCATGTTTGGAGACG

               1251   -   1301
UN15995        --> CTACAGCTGTATTTCAAGACTGTCAAATCAAAGCAAAACAAGGCCTACCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903289       <-- CTACAGCTGTATTTCAAGACTGCCAAATCAAAGCAAAACAAGGCCTACCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV571620       <-- CTACAGCTGTATTTCAAGACTGTCAAATCAAAGCAAAACAAGGCTTACCA  Raphanus raphanistrum subsp. landra
EY901644       <-- CTACAGCTGTATTTCAAGACTGCCAAATCAAAGCAAAACAAGGCCTACCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY894115       <-- CTACAGCTGTATTTCAAGACTGTCAAATCAAAGCAAAACAAGGCCTACCA  Raphanus raphanistrum subsp. maritimus
EY911211       <-- CTACTGCTGTATTTCAAGACTGCCAAATCAAAGCAAAACAAGGCCTACCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY907313       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY905146       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY897923       --> CTACAGCTGTATTTCAAGACTGTCAAATCAAAGCAAAACAAGGCCTACCA  Raphanus raphanistrum subsp. maritimus
EV566501       --> CTACAGCTGTATTTCAAGACTGTCAAATCAAAGCAAAACAAGGCTTACCA  Raphanus raphanistrum subsp. landra

               1301   -   1351
UN15995        --> AACCAGAAGAACAGCATCACGGCTCAAGGACGTAAAGATCCTAACCAGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903289       <-- AACCAGAAGAACAGCATCACGGCTCAAGGACGTAAAGATCCTAACCAGCC
EV571620       <-- AACCAGAAGAACAGCATCACGGCTCAAGGACATAAAGATTCTAACCAGCC
EY901644       <-- AACCAGAAGAACAGCATCACGGCTCAAGGACGTAAAGATCCTAACCAGCC
EY894115       <-- AACCAGAAGAACAGCATCACGGCTCAAGGACGTAAAGATCCTAACCAGCC
EY911211       <-- AACCAGAAGAACAGCATCACGGCTCAAGGACGTAAAGATCCTAACCAGCC
EY907313       --> ..................................................
EY905146       --> ..................................................
EY897923       --> AACCAGAAGAACAGCATCACGGCTCAAGGACGTAAAGATCCTAACCAGCC
EV566501       --> AACCAGAAGAACAGCATCACGGCTCAAGGACATAAAGATTCTAACCAGCC

               1351   -   1401
UN15995        --> AACCGGATTCATGATCCAATTTAGTAACATAACGGCTGACACAGACCTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903289       <-- AACCGGATTCATGATCCAATTTAGTAACATAACGGCTGACACAGACCTAC
EV571620       <-- AACCGGATTCATGATCCAATTTAGTAACATAACGGCTGACACAGACCTAC
EY901644       <-- GACCGGATTCATGATCCAATTTAGTAACATAACGGCTGACACAGACCTAT
EY894115       <-- AACCGGATTCATGATCCAATTTAGTAACATAACGGCTGACACAGACCTAC
EY911211       <-- CACCGGATTCATGATCCAATTTAGTAACATAACGGCTGACACAGACCTAC
EY907313       --> ..................................................
EY905146       --> ..................................................
EY897923       --> AACCGGATTCATGATCCAATTTAGTAACATAACGGCTGACACAGACCTAC
EV566501       --> AACCGGATTCATGATCCAATTTAGTAACATAACGGCTGACACAGACCTAC

               1401   -   1451
UN15995        --> TTCCAAACTTAAATACCACTGCTACTTACCTGGGTCGGCCATGGAAACTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903289       <-- TTCCAAACTTAAATACCACTTCTACTTACCTGGGTCGGCCATGGAAACTA
EV571620       <-- TTCCAAACTTAAATACCACTGCTACTTACCTGGGTCGGCCATGGAAACTA
EY901644       <-- TTCCAAACTTAAATACCATTTTTACTTACCTGGGTCGGCCATGGAAACTA
EY894115       <-- TTCCAAACTTAAATACCACTGCTACTTACCTGGGTCGGCCATGGAAACTA
EY911211       <-- TTCCAAACTTAAATACCACTGCTACTTACCTGGGTCGGCCATAGAAACTA
EY907313       --> ..................................................
EY905146       --> ..................................................
EY897923       --> TTCCAAACTTAAATACCACTGCTACTTACCTGGGTCGGCCATGGAAACTA
EV566501       --> TTCCAAACTTAAATACCACTGCTACTTACCTGGGTCGGCCATGGAAACTA

               1451   -   1501
UN15995        --> TATTCTAGAACAGTGTTCATGCAAAACTACATGAGTGATGTGCTCAAGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903289       <-- TATTCTAGAACAGTGTTCATGCAAAACTACATGAGTGAAGTACTCAAGCC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV571620       <-- TATTCTAGAACAGTGTTCATGCAAAACTACATGAGTGATGTGCTCAAGCC  Raphanus raphanistrum subsp. landra
EY901644       <-- TATTCTAGAACAGTGTTCATGCAAAACTACATGAGTGAAGTACTCAAGCC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY894115       <-- TATTCTAGAACAGTGTTCATGCAAAACTACATGAGTGATGTGCTCAAGCC  Raphanus raphanistrum subsp. maritimus
EY911211       <-- TATTTTAGAACAGTGTTCATGCAAAACTACATGAGTGATGTACTCAAGCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY907313       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY905146       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY897923       --> TATTCTAGAACAGTGTTCATGCAAAACTACATGAGTGATGTGCTCAAGCC  Raphanus raphanistrum subsp. maritimus
EV566501       --> TATTCTAGAACAGTGTTCATGCAAAACTACATGAGTGATGTGCTCAAGCC  Raphanus raphanistrum subsp. landra

               1501   -   1551
UN15995        --> CGAAGGATGGCTCGAATGGAACGGCAATTTTGCGTTGGACACGTTGTACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903289       <-- CGAAGGATGGCTCGAATGGAACGGCAATTTTGCGTTGGACACGTTGTACT
EV571620       <-- CGAAGGATGGCTCGAATGGAACGGCAATTTTGCGTTGGACACGTTGTACT
EY901644       <-- CGAAGGATGGCTCGAATGGAACGGCAATTTTGCGTTGGACACGTTGTACT
EY894115       <-- CGAAGGATGGCTCGAATGGAACGGCAATTTTGCGTTGGACACGTTGTACT
EY911211       <-- CGAAGGATGGCTCGAATGGAACGGTAATTTTGCGTTGAACACGTTGTACT
EY907313       --> ..................................................
EY905146       --> ..................................................
EY897923       --> CGAAGGATGGCTCGAATGGAACGGCAATTTTGCGTTGGACACGTTGTACT
EV566501       --> CGAAGGATGGCTCGAATGGAACGGCAATTTTGCGTTGGACACGTTGTACT

               1551   -   1601
UN15995        --> ATGCCGAATATATGAACAACGGACCGGGGGCTAGCCTTGACCGTCGTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903289       <-- ATGCCGAATATATGAACAACGGACCGGGGGCTAGCCTTGACCGTCGTGTT
EV571620       <-- ATGCCGAATATATGAACAACGTACCGGGGGCTAGCCTTGACCGTCGTGTT
EY901644       <-- ATGCCGAATATATGAACAACGGACCGGGGGCTAGCCTTGACCGTCGTGTT
EY894115       <-- ATGCCGAATATATGAACAACGGACCGGGGGCTAGCCTTGACCGTCGTGTT
EY911211       <-- ATGCCGAATATATGAACAACGGACCGGGGGCTAGCCTTGACCGTCGTGTT
EY907313       --> ..................................................
EY905146       --> ..................................................
EY897923       --> ATGCCGAATATATGAACAACGGACCGGGGGCTAGCCTTGACCGTCGTGTT
EV566501       --> ATGCCGAATATATGAACAACGTACCGGGGGCTAGCCTTGACCGTCGTGTT

               1601   -   1651
UN15995        --> AAGTGGCCAGGGTACCATCTGTTGAATAATTCGGCAGAAGCTATCAACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903289       <-- AAGTGGCCAGGGTACCATCTGTTGAATAATTCGGCAGAAGCTATTAACTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV571620       <-- AAGTGGCCAGGGTACCATCTGTTGAATAATTCGGCAGAAGCTATCAACTT  Raphanus raphanistrum subsp. landra
EY901644       <-- AAGTGGCCAGGGTACCATCTGTTGAATAATTCGGCAGAAGCTATTAACTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY894115       <-- GAGTGGCCAGGGTACCATCTGTTGAATAATTCGGCAGAAGCTATCAACTT  Raphanus raphanistrum subsp. maritimus
EY911211       <-- AAGTGGCCAGGGTACCATCTGTTGAATAATTCGGCAGAAGCTATTAACTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY907313       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY905146       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY897923       --> GAGTGGCCAGGGTACCATCTGTTGAATAATTCGGCAGAAGCTATCAACTT  Raphanus raphanistrum subsp. maritimus
EV566501       --> AAGTGGCCAGGGTACCATCTGTTGAATAATTCGGCAGAAGCTATCAACTT  Raphanus raphanistrum subsp. landra

               1651   -   1701
UN15995        --> TACGGTGGCACAGTTCATAAAAGGGAACTTATGGCTGCCTGCAACTGGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903289       <-- TACGGTGGCACAGTTCATAAAAGGGAACTTATGGCTGCCTGCAACTGGTA
EV571620       <-- TACGGTGGCACAGTTCATAAAAGGGAACTTATGGCTGCCTGCAACTGGTA
EY901644       <-- TACGGTGGCACAGTTCATAAAAGGGAACTTATGGCTGCCTGCAACTGGTA
EY894115       <-- TACGGTGGCACAGTTCATAAAAGGGAACTTATGGCTGCCTGCAACTGGTA
EY911211       <-- TACGGTGGCACAGTTCATAAAAGGGAACTTATGGCTGCCTGCAACTGGTA
EY907313       --> ..................................................
EY905146       --> ..................................................
EY897923       --> TACGGTGGCACAGTTCATA...............................
EV566501       --> TACGGTGGCACAGTTCATAAAAGGGAACTTATGGCTGCCTGCAACTGGTA

               1701   -   1751
UN15995        --> TCAAATACATTGCTGGTCTATCTTCGTAAATTAATCAAGTTGGATATAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903289       <-- TCAAATACATTGCTGGTCTATCTTCGTAAATTAATCAAGTTGGATATAAC
EV571620       <-- TCAAATACATTGCTGGTCTATCTTCGTAAATTAATCAAGTTGGATATAAC
EY901644       <-- TCAAATACATTGCTGGTCTATCTTCGTAAATTAATCAAGTTGGATATAAC
EY894115       <-- TCAAATACATTGCTGGTCTATCTTCGTAAATTAATCAAGTTGGATATAAC
EY911211       <-- TCAAATACATTGCTGGTCTATTTTCGTAAATCAATCAAGTTGGATATAAC
EY907313       --> ..................................................
EY905146       --> ..................................................
EY897923       --> ..................................................
EV566501       --> TCAAATACATTGCTGGTCTATCTTCGTAAATTAATCAAGTTGGATATAAC

               1751   -   1801
UN15995        --> CCCTTTCATATAGATGTCTATGTTTTCTTTCTCATTTTACTGTATTTATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903289       <-- TCCTTTCATATAGATGTCTATGTTTTCTTTCTCAGTTTACTGTATTTATT
EV571620       <-- CCCTTTCATATAGATGTCTATGTTTTCTTTCTCATTTTACTGTATTTATT
EY901644       <-- TCCTTTCATATAGATGTCTATGTTTTCTTTCTCAGTTTACTGTATTTATT
EY894115       <-- CCCTTTCATACAGATGTCTATGTTTTCTTTCTCATTTTACTGTATTTATT
EY911211       <-- CCCTTTCATATAGATGTCTATGTTTTCTTTCTCATTT-ACTGTATTTATT
EY907313       --> ..................................................
EY905146       --> ..................................................
EY897923       --> ..................................................
EV566501       --> CCCTTTCATATAGATGTCTATGTTTTCTTTCTCATTTTACTGTATTTATT

               1801   -   1851
UN15995        --> ATATACAGTTTCTGTAAAAGTTGAACTGCTCTATAAGTTTAATACTCCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY903289       <-- ATATACAGTTTCTGTAAAAGTTGAACTGCTCTATAAGTTTAATACTCCCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV571620       <-- ATATACAGTTTCTGTAAAAGTTGAACTGCTCTA-AAGTTTAATACT....  Raphanus raphanistrum subsp. landra
EY901644       <-- ATATACAGTTTCTGTAAAAGTTGAACTGCTCTATAAGTTTAATACTCCCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY894115       <-- ATATACAGTTTCTGTAAAAGTTGAACTGCTCTA-AAGTTTAATACTCC..  Raphanus raphanistrum subsp. maritimus
EY911211       <-- ATATACAGTTTCTGTAAAAGTTGAACTGCTCTATAAGTTTAATACTCCCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY907313       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY905146       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY897923       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV566501       --> ATATACAGTTTCTGTAAAAGTTGAACTGCTCTA-AAGTTTAATACTCCCT  Raphanus raphanistrum subsp. landra

               1851   -   1901
UN15995        --> TTGTTTT
                   ~~~~~~~
EY903289       <-- TTGTTTT
EV571620       <-- .......
EY901644       <-- TTGTTTT
EY894115       <-- .......
EY911211       <-- TTGTTTT
EY907313       --> .......
EY905146       --> .......
EY897923       --> .......
EV566501       --> TTGT...