Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN16012

               1      -     51
UN16012        --> TTTTTGAGAACCAAAAAAAAAA-CGAAGGAGGAAAAGGGGATTTGGTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767718       <-- TTTTTGAGAACCAAAAAAAA-T-CGAAGGAGGAAAAGGGGATTTGGTTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV543931       <-- .....GAGAACCAAAAAAAAAT-CGAAGGAGGAAAAGGGGATTTGGTTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD546541       <-- ....................................aGGGATTTGGTTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD953202       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD529171       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX904769       --> TTTTTGAGAACCAAAAAAAAAATCGAAGGAGGAAAAGGGGATTTGGTTTT  Raphanus sativus cv Rat-Tail Radish #3870
FD957520       --> TTTTTGAGAACCAAAAAAAAAA-CGAAGGAGGAAAAGGG-ATTTGGTTTT  Raphanus sativus cv Rat-Tail Radish #3870
EV548214       --> .....GAGAACCAAAAAAAAAT-CGAAGGAGGAAAAGGGGATTTGGTTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV569535       --> .....GAGAACCAAAAAAAAAA-CGAAGGAGGAAAAGGG-ATTTGGTTTT  Raphanus raphanistrum subsp. landra
EV570201       --> .....GAGAACCAAAAAAAAAA-CGAAGGAGGAAAAGGG-ATTTGGTTTT  Raphanus raphanistrum subsp. landra

               51     -    101
UN16012        --> ATTGGAGGGTGTGAATTGTTGTTTAGCAGCGCCGAGATTACAAATTGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767718       <-- ATTGGAGGGTGTGAATTGTTGTTTAGCAGCGCCGAGATTACAAATTGGAG
EV543931       <-- ATTGGAGGGTGTGAATTGTTGTTTAGCAGCGCCGATATTACAAATTGGAG
FD546541       <-- ATTGGAGAGTGTGAATTGTTGTTTAGAGGCGCCGAGATTACAAATTGGAG
FD953202       <-- ..................................................
FD529171       <-- ..................................................
EX904769       --> ATTGGAGGGTGTGAATTGTTGTTTAGCAGCGCCGAGATTACAAATTGGAG
FD957520       --> ATTGGAGAGTGTGAATTGTTGTTTAGAAGCGCCGAGATTACAAATTGGAG
EV548214       --> ATTGGAGGGTGTGAATTGTTGTTTAGCAGCGCCGATATTACAAATTGGAG
EV569535       --> ATTGGAGAGTGTGAATTGTTGTTTAGAAGCGCCGAGATTACAAATTGGAG
EV570201       --> ATTGGAGAGTGTGAATTGTTGTTTAGAAGCGCCGAGATTACAAATTGGAG

               101    -    151
UN16012        --> GGTGAATTTGAGCAGAGAATGGAAGAAATAAGATCAGCGATGGAACAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767718       <-- GGTGAATTTGAGCAGAGAATGGAAGAAATAAGATCAGCGATGGAACAGCA
EV543931       <-- GGTGAATTTGAGCAGAGAATGGAAGAAATAAGATCAGCGATGGAACAGCA
FD546541       <-- GGTGAATTTGAGCAGAGAATGGAAGAAATAAGATCAGCGATGGAACAGCA
FD953202       <-- ...........GCAGAGAATGGAAGAAATAAGATCAGCGATGGAACAGCA
FD529171       <-- ..................................................
EX904769       --> GGTGAATTTGAGCAGAGAATGGAAGAAATAAGATCAGCGATGGAACAGCA
FD957520       --> GGTGAATTTGAGCAGAGAATGGAAGAAATAAGATCAGCGATGGAACAGCA
EV548214       --> GGTGAATTTGAGCAGAGAATGGAAGAAATAAGATCAGCGATGGAACAGCA
EV569535       --> GGTGAATTTGAGCAGAGAATGGAAGAAATAAGATCAGCGATGGAACAGCA
EV570201       --> GGTGAATTTGAGCAGAGAATGGAAGAAATAAGATCAGCGATGGAACAGCA

               151    -    201
UN16012        --> GATGGATCTGATGGCGGATCTGGTCCACAAACTCTCCGGAGAGCTCCGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767718       <-- GATGGA--TGATGGCGGATCTGGTCCACAAACTCTCCGGAGAGCTCCGTA
EV543931       <-- GATGGATCTGATGGCGGATCTGGTCCACAAACTCTCCGGAGAGCTCCGTA
FD546541       <-- GATGGATCTGATGGCGGATCTGGTCCACAAACTCTCCGGAGAGCTCCGTA
FD953202       <-- GATGGATCTGATGGCGGATCTGGTCCACAAACTCTCCGGAGAGCTCCGTA
FD529171       <-- ..................................................
EX904769       --> GATGGATCTGATGGCGGATCTGGTCCACAAACTCTCCGGAGAGCTCCGTA
FD957520       --> GATGGATCTGATGGCGGATCTGGTCCACAAACTCTCCGGAGAGCTCCGTA
EV548214       --> GATGGATCTGATGGCGGATCTGGTCCACAAACTCTCCGGAGAGCTCCGTA
EV569535       --> GATGAATCTGATGGCGGATCTGGTCCAGAAACTCTCCGGAGAGCTCCGTA
EV570201       --> GATGAATCTGATGGCGGATCTGGTCCAGAAACTCTCCGGAGAGCTCCGTA

               201    -    251
UN16012        --> CCGGATTGCAACCTGCCTACGAGAATTTCATTGGTTTCTTCCACGCCATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767718       <-- CCGGATTGCAACCTGCCTACGAGAATTTCATTGGTTTCTTCCACGCCATT
EV543931       <-- CCGGATTGCAACCTGCCTACGAGAATTTCATTGGTTTCTTCCACGCCATT
FD546541       <-- CCGGATTGCAACCTGCCTACGAGAATTTCATTGGTTTCTTCCACGCCATT
FD953202       <-- CCGGATTGCAACCTGCCTACGAGAATTTCATTGGTTTCTTCCACGCCATT
FD529171       <-- .....................................CTTCCACGCCATT
EX904769       --> CCGGATTGCAACCTGCCTACGAGAATTTCATTGGTTTCTTCCACGCCATT
FD957520       --> CCGGATTGCAACCTGCCTACGAGAATTTCATTGGTTTCTTCCACGCCATT
EV548214       --> CCGGATTGCAACCTGCCTACGAGAATTTCATTGGTTTCTTCCACGCCATT
EV569535       --> CCGGATTGCAACCTGCCTACGATAATTTCATTGGTTTCTTCCACGCCATC
EV570201       --> CCGGATTGCAACCTGCCTACGATAATTTCATTGGTTTCTTCCACGCCATC

               251    -    301
UN16012        --> GATTGGAAGGAACCTTGGATTATGGGATTAATGGCGTTTCATGCTCTGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767718       <-- GATTGGAAGGAACCTTGGATTACGGGATTAATGGCGTTTCATGCTCTGGT
EV543931       <-- GATTGGAAGGAACCTTGGATTATGGGATTAATGGCGTTTCATGCTCTGGT
FD546541       <-- GATTGGAAGGAACCTTGGATTGTGGGATTAATGGCGTTTCATGCTCTGGT
FD953202       <-- GATTGGAAGGAACCTTGGATTGTGGGATTAATGGCGTTTCATGCTCTGGT
FD529171       <-- GATTGGAAGGAACCTTGGATTATGGGATTAATGGCGTTTCATGCTCTGCT
EX904769       --> GATTGGAAGGAACCTTGGATTATGGGATTAATGGCGTTTCATGCTCTGGT
FD957520       --> GATTGGAAGGAACCTTGGATTGTGGGATTAATGGCGTTTCATGCTCTGGT
EV548214       --> GATTGGAAGGAACCTTGGATTATGGGATTAATGGCGTTTCATGCTCTGGT
EV569535       --> GATTGGAAGGAACCTTGGATTATGGGATTAATGGCGTTTCATGCTCTGCT
EV570201       --> GATTGGAAGGAACCTTGGATTATGGGATTAATGGCGTTTCATGCTCTGCT

               301    -    351
UN16012        --> GCTAATTGTGACTCTTGTTTCGAGAAGGCATCTCAACTTCCACATGTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767718       <-- GCTAATTGTGACTCTTGTTTCGAGAAGGCATCTAAACTTCCACATGTTCT
EV543931       <-- GCTAATTGTGACTCTTGTTTCGAGAAGGCATCTAAACTTCCACATGTTCT
FD546541       <-- GCTAATTGTGACTCTTGTTTCGAGAAGGCATCTCAACTTCCACATGTTCT
FD953202       <-- GCTAATTGTGACTCTTGTTTCGAGAAGGCATTTCAACTTCCACATGTTCT
FD529171       <-- GCTAATTGTTACTCTTGTTTCGAGAAGGCATCTCAACTTCCATATGTTCT
EX904769       --> GCTAATTGTGACTCTTGTTTCGAGAAGGCATCTAAACTTCCACATGTTCT
FD957520       --> GCTAATTGTGACTCTTGTTTCGAGAAGGCATCTCAACTTCCACATGTTCT
EV548214       --> GCTAATTGTGACTCTTGTTTCGAGAAGGCATCTAAACTTCCACATGTTCT
EV569535       --> GCTAATTGTGACTCTTGTTTCGAGAAGGCATCTCAACTTCCACATGTTCT
EV570201       --> GCTAATTGTGACTCTTGTTTCGAGAAGGCATCTCAACTTCCACATGTTCT

               351    -    401
UN16012        --> TGTTCTTATTGTCTTTGGGTGGAGTTTACTTTGCAGAGAGTCTCAACCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767718       <-- TGTTCTTATTGTCTTTGGGTGGAGTTTACTTTGCAGAGAGTCTCAACCGA
EV543931       <-- TGTTCTTATTGTCTTTGGGTGGAGTTTACTTTGCAGAGAGTCTCAACCGA
FD546541       <-- TGTTCTTATTGTCTTTGGGTGGAGTTTACTTTGCAGAGAGTCTCAACCGA
FD953202       <-- TGTTCTTATTGTCTTTGGGTGGAGTTTACTTTGCAGAGAGTTTCAACCGA
FD529171       <-- TGTTCTTATTGTCTTTGGGTGGAGTATACTTTGCAGAGAGTCTCAACCGA
EX904769       --> TGTTCTTATTGTCTTTGGGTGGAGTTTACTTTGCAGAGAGTCTCAACCGA
FD957520       --> TGTTCTTATTGTCTTTGGGTGGAGTTTACTTTGCAGAGAGTCTCAACCGA
EV548214       --> TGTTCTTATTGTCTTTGGGTGGAGTTTACTTTGCAGAGAGTCTCAACCGA
EV569535       --> TGTTCTTATTGTCTTTGGGTGGAGTTTACTTTGCAGAGAGTCTCAACCGA
EV570201       --> TGTTCTTATTGTCTTTGGGTGGAGTTTACTTTGCAGAGAGTCTCAACCGA

               401    -    451
UN16012        --> GTCTTGAGAAAGAACTGGAAGAGCTTCTCAACTCAGAATTACTTTGACCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767718       <-- GTCTTGAGAAAGAACTGGAAGAGCTTCTCAACTCAGAATTACTTTGACCC
EV543931       <-- GTCTTGAGAAAGAACTGGAAGAGCTTCTCAACTCAGAATTACTTTGACCC
FD546541       <-- GTCTTGAGAAAGAACTGGAAGAGCTTCTCAACTCAGAATTACTTTTACCC
FD953202       <-- GTCTTGAGAAAGAACTGGAAGAGCTTCTCAACTCAGAATTACTTTGACCC
FD529171       <-- GTCTTGAGAAAGAACTGGAAGAGCTTCTCAACTCAGAATTACTTTGACCC
EX904769       --> GTCTTGAGAAAAAATTGGAGGAGCTTCTCAACTCAGAATTACTTTGACCC
FD957520       --> GTCTTGAGAAAGAACTGGAAGAGCTTCTCAACTCAGAATTACTTTGACCC
EV548214       --> GTCTTGAGAAAGAACTGGAAGAGCTTCTCAACTCAGAATTACTTTGACCC
EV569535       --> GTCTTGAGAAAAAACTGGAGGAGCTTCTCAACTCAGAATTACTTTGACCC
EV570201       --> GTCTTGAGAAAAAACTGGAGGAGCTTCTCAACTCAGAATTACTTTGACCC

               451    -    501
UN16012        --> CCACGGAGCCTTCCTATCTGTTCTCTGGTCAGGACCACTTTTGGTCATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767718       <-- CCACGGAGCCTTCCTATCTGTTCTCTGGTCAGGACCACTTTTGGTCATTG
EV543931       <-- CCACGGAGCCTTCCTATCTGTTCTCTGGTCAGGACCACTTTTGGTCATTG
FD546541       <-- CCACGGAGCCTCCCTATCTGTTCTCTGGTCAGGACCACTTTTGGTCATTG
FD953202       <-- CCACGGAGCCTTCCTATCTGTTCTCTGGTCAGGACCACTTTTGGTCATTG
FD529171       <-- CCACGGAGCCTTCCTATCTGTTCTCTGGTCAGGACCACTTTTGGTCATTG
EX904769       --> CCACGGAGCTTTCCTATCTGTTCTCTGGTCAGGACCACTTTTGGTCATTG
FD957520       --> CCACGGAGCCTTCCTATCTGTTCTCTGG......................
EV548214       --> CCACGGAGCCTTCCTATCTGTTCTCTGGTCAGGACCACTTTTGGTCATTG
EV569535       --> GCACGGAGCCTTCCTATCTGTTCTTTGGTCAGGACCACTTTTGGTCATTG
EV570201       --> GCACGGAGCCTTCCTATCTGTTCTTTGGTCAGGACCACTTTTGGTCATTG

               501    -    551
UN16012        --> CAATCATAATCCTGATAAACACACTGTTCTCGCTTTGCTACCTTATTGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767718       <-- CAATCATAATCCTGATAAACACACTGTTCTCGCTTTGCTACCTTATTGTA
EV543931       <-- CAATCATAATCCTGATAAACACACTGTTCTCGCTTTGCTACCTTATTGTA
FD546541       <-- CAATCATAATCCTGATAAACACACTGTTCTCGCTTTGCTACCTTATTGTA
FD953202       <-- CAATCATAATCCTGATAAACACACTGTTCTCGCTTTGCTACCTTATTGTA
FD529171       <-- CAATCATAATCCTGATAAACACACTGTTCTCGCTTTGCTACC........
EX904769       --> CAATCATAATCCTGATAAACACACTGTTCTCGCTTTGCTACCTTATTGTA
FD957520       --> ..................................................
EV548214       --> CAATCATAATCCTGATAAACACACTGTTCTCGCTTTGCTACCTTATTGTA
EV569535       --> CAATCATAATCCTGATAAACACACTGTTCTCGCTTTGCTACCTTATTGTA
EV570201       --> CAATCATAATCCTGATAAACACACTGTTCTCGCTTTGCTACCTTATTGTA

               551    -    601
UN16012        --> AAATGGAAAAGAGCTGAGCTCAGGCATCGTGCAAGGCTTGCTCGTCCCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767718       <-- AAATGGAAAAGAGCTGAGCTCAGGCATCGTGCAAGGCTTGCTCGTCCCAA
EV543931       <-- AAATGGAAAAGAGCTGAGCTCAGGCATCGTGCAAGGCTTGCTCGTCCCAA
FD546541       <-- AAATGGAAAAGAGCTGAGCTCAGGCATCGTGCAAGGCTTGCTCGTCCCAA
FD953202       <-- AAATGGAAAAGAGCTGAGCTCAGGCATCGTGCAAGGCTTGCTCGTCCCAA
FD529171       <-- ..................................................
EX904769       --> AAATGGAAAAGAGCTGAGCTCAGGCATCGTGCAAGGCTTGCTCGTTCCAA
FD957520       --> ..................................................
EV548214       --> AAATGGAAAAGAGCTGAGCTCAGGCATCGTGCAAGGCTTGCTCGT.....
EV569535       --> AAATGGAAAAGAGCTGAGCTCAGGCATCGTGCAAGGCTTGCTCGTCCCAA
EV570201       --> AAATGGAAAAGAGCTGAGCTCAGGCATCGTGCAAGGCTTGCTCGTCCCAA

               601    -    651
UN16012        --> GCAGGAATAATAGATCCCAACTCTCTCTCTCTCTCTCT---TTTCTTT-T
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767718       <-- GCAGGAATAATAGATCCCAACTCTCTCTCTCTCTCTCT---TTTTTTC-T  Raphanus raphanistrum subsp. raphanistrum (NY)
EV543931       <-- GCAGGAATAATAGATCCCAACTCTCTCTCTCTCTCTCT---CTTTTTTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD546541       <-- GCAGGAATAATAGATCCCAACTCTCTCTCTCTCTCTCT--CTTTTTTTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD953202       <-- GCAGGAATAATAGATCCCAACTCTCTCTCTCTCTCTCTCTCTTTTTTTCT  Raphanus sativus cv Rat-Tail Radish #3870
FD529171       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX904769       --> GCAGGAATAATAGATCCCAACTCTCTCTCTCTCT-T-T---TTTCTTT--  Raphanus sativus cv Rat-Tail Radish #3870
FD957520       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EV548214       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV569535       --> GCAGGAATAATAGATCCCAACTCTCTCTCTCTCTCT-T---TTTCTTT--  Raphanus raphanistrum subsp. landra
EV570201       --> GCAGGAATAATAGATCCCAACTCTCTCTCTCTCTCT-T---TTTCTTT--  Raphanus raphanistrum subsp. landra

               651    -    701
UN16012        --> TTCTCGTATCACATCCTTTTTGTCACATATATGTATACTCTCCTCCCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767718       <-- TTCTCGTATCACATCCTTTTTGTCACATATATGTATACTCTCCTCCCTCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV543931       <-- TTCTCGTATCACATCCTTTTTGTCACATATATGTATACTCTCCTCCCTCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD546541       <-- TTCTCGTATCACATCCTTTTTGTCACATATATGTATACTCTCCTCCCTCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD953202       <-- TTCTCGTATCACATCCTTTTTGTCACATATATGTATACTCTCCTCCCTCA  Raphanus sativus cv Rat-Tail Radish #3870
FD529171       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX904769       --> --CTCGTATCACATCCTTTTTGTCACATATATGTATACTCTCCTCC-TCA  Raphanus sativus cv Rat-Tail Radish #3870
FD957520       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EV548214       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV569535       --> --CTCGTATCACATCCTTTTTGTCACATATATGTATACTCTCCTCCCTCA  Raphanus raphanistrum subsp. landra
EV570201       --> --CTCGTATCACATCCTTTTTGTCACATATATGTATACTCTCCTCCCTCA  Raphanus raphanistrum subsp. landra

               701    -    751
UN16012        --> TTTTGCAATGCAAACTGTTAGTTTTCTTTTCTTTTTTCTTTTTCTTTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767718       <-- TTTTGCAATGCAAACTGTTAGTTTTCTT......................
EV543931       <-- TTTTGCAATGCAAACTGTTAGTTTTCct......................
FD546541       <-- TTTTGCAATGCAAACTGTTAGTTTTCat......................
FD953202       <-- TTTTGCAATGCAAACTGTTAGTTTTCTTTTCTTTTTTCTTTTTCTTTTTT
FD529171       <-- ..................................................
EX904769       --> TTT-GC-ATGCAAACTGTTAGTTTTCTT......................
FD957520       --> ..................................................
EV548214       --> ..................................................
EV569535       --> TTTTGCAATGCAAACTGTTAGTTTTCTTTTCTTTTTTCTTTTTCTTTTTT
EV570201       --> TTTTGCAATGCAAACTGTTAGTTTTCTTTTCTTTTTTCTTTTTCTTTTTT

               751    -    801
UN16012        --> TTTTGTTAACAGCAAACAGTTAGTTTTCTATTTTATGTATTTCGTTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767718       <-- .................................................
EV543931       <-- .................................................
FD546541       <-- .................................................
FD953202       <-- TTTTGTTAACAGCAAACAGTTAGTTTTCTATTTTATGTATTTCGTTTTG
FD529171       <-- .................................................
EX904769       --> .................................................
FD957520       --> .................................................
EV548214       --> .................................................
EV569535       --> TTTTGTTAACAGCAAACAGTTAGTTTTCTATTTTATGTATTTCG.....
EV570201       --> TTTTGTTAACAGCAA-CAGTTAGTTTTCTATTTatg.............