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Alignment for radish unigene UN16048

               1      -     51
UN16048        --> GGAACTCAAGAGTGGTGTAGTGAGAGAG-AGAAGAAGAGAGA-AGA-AGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY432736       <-- ..................................................
FY438882       <-- ..................................................
FY441166       <-- ..................................................
EW718924       <-- ..................................................
FD565763       <-- ..................................................
EV574346       <-- ..................................................
EY926254       <-- ..................................................
EX891100       <-- ..................................................
EX751787       <-- ..................................................
EX901838       <-- ..................................................
FD584102       <-- ..................................................
FD538902       <-- ..................................................
FD541328       --> GGAACTCAAGAGTGGTGTAGTGAGAGA--A-AAGAAGAAAGA--GA--GA
FD544081       --> gggACTCAAGAGTGGTGTAGTGAGAGAG-A--AGAAGA---A-AGA--GA
EX898229       --> ...........ggcaacTAGTGAGAGAGGAGAAGAAGAGAGAGAGAGAGA
FD561661       --> ............ggcaactcaagagtggtgtagtgAGAGAGA-AGA-AGA
FD580283       --> .............ggaactcaagagtggtgtagtgAGAGAGA-AGA-AGA
EY929936       --> ..................................................
FD551540       --> ..................................................
FY432988       --> ..................................................
EX886794       --> ..................................................
EW714769       --> ..................................................
EX747644       --> ..................................................
EV536436       --> ..................................................
FD542971       --> ..................................................
EX886790       --> ..................................................

               51     -    101
UN16048        --> GAGAGAGAAAAAA-TGGGAGGAAAAGGTGCGATGATAGTGGCGATGCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY432736       <-- ..................................................
FY438882       <-- ..................................................
FY441166       <-- ..................................................
EW718924       <-- ..................................................
FD565763       <-- ..................................................
EV574346       <-- ..................................................
EY926254       <-- ..................................................
EX891100       <-- ..................................................
EX751787       <-- ..................................................
EX901838       <-- ..................................................
FD584102       <-- ..................................................
FD538902       <-- ..................................................
FD541328       --> GAGAGAGAAAAAA-TGGGAGGAAAAGGTGCGATGATAGTGGCGATGCTCT
FD544081       --> GAGAGAGAAAAAA-TGGGAGGAAAAGGTGCGATGATAGTGGCGATGCTCT
EX898229       --> GAGAGAGAAAAAAATGGGAGGAAAAGGTGCGATGATAGTGGCGATGCTCT
FD561661       --> GAGAGAGAAAAAA-TGAGAGGAAAAGGTGCGATGATAGTGGCGATGCTCT
FD580283       --> GAGAGAGAAAAAA-TGAGAGGAAAGGGTGCGATGATAGTGGCGATGCTCT
EY929936       --> ...................GGAAAAGGTGCGATGATGGTGGCGATGCTCT
FD551540       --> ..................................................
FY432988       --> ..................................................
EX886794       --> ..................................................
EW714769       --> ..................................................
EX747644       --> ..................................................
EV536436       --> ..................................................
FD542971       --> ..................................................
EX886790       --> ..................................................

               101    -    151
UN16048        --> GCCTTTGGGCACTCTCCGCAACAACAGAAGCAGTTGTAATGGAGGAGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY432736       <-- ..................................................
FY438882       <-- ..................................................
FY441166       <-- ..................................................
EW718924       <-- ..................................................
FD565763       <-- ..................................................
EV574346       <-- ..................................................
EY926254       <-- ..................................................
EX891100       <-- ..................................................
EX751787       <-- ..................................................
EX901838       <-- ..................................................
FD584102       <-- ..................................................
FD538902       <-- ..................................................
FD541328       --> GCCTTTGGGCACTCTCCGCAACAACAGAAGCAGTTGTAATGGAGGAGGAG
FD544081       --> GCCTTTGGGCACTCTCCGCAGCAACAGAAGCAGTTGTAATGGAGGAGGAG
EX898229       --> GCCTTTGGGCACTTTCCGCAACAACAGAAGCAGTTGCAATGGAGGAGGAG
FD561661       --> GCCTTTGGGCACTCTCCGCAACAACAGAAGCAGTTGTAATGGAGGAGGAG
FD580283       --> GCCTTTGGGCACTCTCCGCAACAACAGAAGCAGTTGTAATGGAGGAGGAG
EY929936       --> GCCTTTGGGCACTCTCCGCAACAACAGAAGCAGTTGTAATGGAGGAGGAG
FD551540       --> .......................gCAGAAGCAGTTGTAATGGAGGAGGAG
FY432988       --> ..................................................
EX886794       --> ..................................................
EW714769       --> ..................................................
EX747644       --> ..................................................
EV536436       --> ..................................................
FD542971       --> ..................................................
EX886790       --> ..................................................

               151    -    201
UN16048        --> CCAGGCTTGATGATGAACTTCTACAAGGACACGTGTCCTCAGGCTGAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY432736       <-- ..................................................
FY438882       <-- ..................................................
FY441166       <-- ..................................................
EW718924       <-- ..................................................
FD565763       <-- ..................................................
EV574346       <-- ..................................................
EY926254       <-- ..................................................
EX891100       <-- ..................................................
EX751787       <-- ..................................................
EX901838       <-- ..................................................
FD584102       <-- ..................................................
FD538902       <-- ..................................................
FD541328       --> CCAGGCTTGATGATGAACTTCTACAAGGACACGTGTCCTCAGGCTGAAGA
FD544081       --> CCAGGCTTGATGATGAACTTCTACAAGGACACGTGTCCTCAGGCTGAAGA
EX898229       --> CCAGGCTTGATGATGAACTTCTACAAGGACACGTGTCCTCAGGCTGAAGG
FD561661       --> CCAGGCTTGATGATGAACTTCTACAAGGACACGTGTCCTCAGGCTGAAGG
FD580283       --> CCAGGCTTGATGATGAACTTCTACAAGGACACGTGTCCTCAGGCTGAAGA
EY929936       --> CCAGGCTTGATGATGAACTTCTACAAGGACACGTGTCCTCAGGCTGAAGA
FD551540       --> CCAGGCTTGATGATGAACTTCTACAAGGACACGTGTCCTCAGGCTGAAGA
FY432988       --> ..................................................
EX886794       --> ..................................................
EW714769       --> ..................................................
EX747644       --> ..................................................
EV536436       --> ..................................................
FD542971       --> ..................................................
EX886790       --> ..................................................

               201    -    251
UN16048        --> CATCATCCGTGAACAAGTCAAACTCCTCTACAAACGCCACAAGAACACCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY432736       <-- ..................................................
FY438882       <-- ..................................................
FY441166       <-- ..................................................
EW718924       <-- ..................................................
FD565763       <-- ..................................................
EV574346       <-- ..................................................
EY926254       <-- ..................................................
EX891100       <-- ..................................................
EX751787       <-- ..................................................
EX901838       <-- ..................................................
FD584102       <-- ..................................................
FD538902       <-- ..................................................
FD541328       --> CATCATCCGTGAACAAGTCAAACTCCTCTACAAACGCCACAAGAACACCG
FD544081       --> CATCATCCGT-AACAAGTCAAACTCCTCTACAAACGCCACAAGAACACCG
EX898229       --> CATCATCCGTGAACAAGTCAAACTCCTCTACAAACGCCACAAGAACACCG
FD561661       --> CATCATCCGTGAACAAGTCAAACTCCTCTACAAACGCCACAAGAACACCG
FD580283       --> CATCATCCGTGAACAAGTCAAACTCCTCTACAAACGCCACAAGAACACCG
EY929936       --> CATCATCCGTGAACAAGTCAAACTCCTCTACAAACGCCACAAGAACACCG
FD551540       --> CATCATCCGTGAACAAGTCAAACTCCTCTACAAACGCCACAAGAACACCG
FY432988       --> .................gtcAACTCCTCTACAA-CGCCACAAGAACACCG
EX886794       --> ..................................................
EW714769       --> ..................................................
EX747644       --> ..................................................
EV536436       --> ..................................................
FD542971       --> ..................................................
EX886790       --> ..................................................

               251    -    301
UN16048        --> CTTTCTCTTGGCTCCGTAACATCTTCCACGACTGTGCTGTCGAGTCATGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY432736       <-- ..................................................
FY438882       <-- ..................................................
FY441166       <-- ..................................................
EW718924       <-- ..................................................
FD565763       <-- ..................................................
EV574346       <-- ..................................................
EY926254       <-- ..................................................
EX891100       <-- ..................................................
EX751787       <-- ..................................................
EX901838       <-- ..................................................
FD584102       <-- ..................................................
FD538902       <-- ..................................................
FD541328       --> CTTTCTCTTGGCTCCGTAACATCTTCCACGACTGCGCTGTCGAGTCATGC
FD544081       --> CTTTCTCTTGGCTCCGTAACATCTTCCACGACTGCGCTGTCGAGTCATGC
EX898229       --> CTTTCTCTTGGCTCCGTAACATCTTCCACGACTGTGCTGTCGAGTCATGC
FD561661       --> CTTTCTCTTGGCTCCGTAACATCTTCCACGACTGTGCTGTCGAGTCATGC
FD580283       --> CTTTCTCTTGGCTCCGTAACATCTTCCACGACTGTGCTGTCGAGTCATGC
EY929936       --> CTTTCTCTTGGCTCCGTAACATCTTCCACGACTGCGCTGTCGAGTCATGC
FD551540       --> CTTTCTCTTGGCTCCGTAACATCTTCCACGACTGTGCCGTCGAGTCGTGC
FY432988       --> CTTTCTCTTGGCTCCGTAACATCTTCCACGACTGTGCTGTCGAGTCATGC
EX886794       --> ..................................................
EW714769       --> ..................................................
EX747644       --> ..................................................
EV536436       --> ..................................................
FD542971       --> ..................................................
EX886790       --> ..................................................

               301    -    351
UN16048        --> GATGCGTCGCTTTTGCTGGATTCGACAAGAAGAGAGCTAGGAGAGAAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY432736       <-- ..................................................
FY438882       <-- ..................................................
FY441166       <-- ..................................................
EW718924       <-- ..................................................
FD565763       <-- ..................................................
EV574346       <-- ..................................................
EY926254       <-- ..................................................
EX891100       <-- ..................................................
EX751787       <-- ..................................................
EX901838       <-- ..................................................
FD584102       <-- ..................................................
FD538902       <-- ..................................................
FD541328       --> GATGCGTCGCTTTTGCTGGATTCCACAAGAAGAGAGCTAGGAGAGAAAGA
FD544081       --> GATGCGTCGCTTTTGCTGGATTCCACAAGAAGAGAGCTAGGAGAGAAAGA
EX898229       --> GATGCGTCGCTTTTGCTGGATTCGACAAGAAGAGAGCTAGGAGAGAAAGA
FD561661       --> GATGCGTCGCTTTTGCTGGATTCGACAAGAAGAGAGCTAGGAGAGAAAGA
FD580283       --> GATGCGTCGCTTTTGCTGGATTCGACAAGAAGAGAGCTAGGAGAGAAAGA
EY929936       --> GATGCGTCGCTTCTGCTGGATTCGACAAGAAGAGAGCTAGGAGAGAAAGA
FD551540       --> GATGCGTCGCTTTTGCTTGATTCGACAAGAAGAGAGCTAGGAGAGAAAGA
FY432988       --> GATGCGTCGCTTTTGCTGGATTCGACAAGAAGAGAGCTAGGAGAGAAAGA
EX886794       --> ..................................................
EW714769       --> ..................................................
EX747644       --> ..................................................
EV536436       --> ..................................................
FD542971       --> ..................................................
EX886790       --> ..................................................

               351    -    401
UN16048        --> ACATGACAGGAGCTTCGGTCTGAGAAACTTCAGATACATTGAGGAGATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY432736       <-- ..................................................
FY438882       <-- ..................................................
FY441166       <-- ..................................................
EW718924       <-- ..................................................
FD565763       <-- ..................................................
EV574346       <-- ..................................................
EY926254       <-- ..................................................
EX891100       <-- ..................................................
EX751787       <-- ..................................................
EX901838       <-- ..................................................
FD584102       <-- ..................................................
FD538902       <-- ..................................................
FD541328       --> ACATGACAGGAGCTTCGGTCTGAGAAACTTCAGATACATTGAGGAGATCA
FD544081       --> ACATGACAGGAGCTTCGGTCTGAGAAACTTCAGATACATTGAGGAGATCA
EX898229       --> ACACGACAGGAGCTTCGGTCTGAGAAACTTCGGATACATCGAGGAGATCA
FD561661       --> ACATGACAGGAGCTTCGGTCTGAGAAACTTCAGATACATTGAGGAGATCA
FD580283       --> ACATGACAGGAGCTTCGGTCTGAGAAACTTCAGATACATTGAGGAGATCA
EY929936       --> ACATGACAGGAGCTTCGGTCTGAGAAACTTCAGATACATTGAGGAGATCA
FD551540       --> ACACGACAGGAGCTTCGGTCTGAGAAACTTCAGATACATTGAGGAGATCA
FY432988       --> ACATGACAGGAGCTTCGGTCTGAGAAACTTCAGATACATTGAGGAGATCA
EX886794       --> .CATGACAGGAGCTTCGGTCTGAGAAACTTCAGATACATTGAGGAGATCA
EW714769       --> ..................................................
EX747644       --> ..................................................
EV536436       --> ..................................................
FD542971       --> ..................................................
EX886790       --> ..................................................

               401    -    451
UN16048        --> AAGAAGCTCTCGAGAGGGAGTGCCCTGGTGTTGTCTCATGTTCCGATATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY432736       <-- AAGAAGCTCTCGAGAGGGAGTGCCCTGGTGTTGTCTCATGTTCCGATATC
FY438882       <-- ..................................................
FY441166       <-- ..................................................
EW718924       <-- ..................................................
FD565763       <-- ..................................................
EV574346       <-- ..................................................
EY926254       <-- ..................................................
EX891100       <-- ..................................................
EX751787       <-- ..................................................
EX901838       <-- ..................................................
FD584102       <-- ..................................................
FD538902       <-- ..................................................
FD541328       --> AAGAAGCTCTCGAGAGGGAGTGCCCTGGCGTTGTCTCATGTTCCGACATC
FD544081       --> AAGAAGCTCTCGAGAGGGAGTGCCCTGGTGTTGTCTCATGTTCCGACATC
EX898229       --> AAGAAGCTCTCGAGAGGGAGTGCCCTGGTGTTGTCTCATGTTCCGATATC
FD561661       --> AAGAAGCTCTCGAGAGGGAGTGCCCTGGTGTTGTCTCATGTTCCGATATC
FD580283       --> AAGAAGCTCTCGAGAGGGAGTGCCCTGGTGTTGTCTCATGTTCCGATATC
EY929936       --> AAGAAGCTCTCGAGAGGGAGTGCCCTGGTGTTGTCTCATGTTCCGATATC
FD551540       --> AAGAAGCTCTCGAGAGGGAGTGCCCTGGTGTTGTCTCATGTTCCGATATC
FY432988       --> AAGAAGCTCTCGAGAGGGAGTGCCCTGGTGTTGTCTCATGTTCCGATATC
EX886794       --> AAGAAGCTCTCGAGAGGGAGTGCCCTGGTGTTGTCTCATGTTCCGATATC
EW714769       --> ..................................................
EX747644       --> ..................................................
EV536436       --> ..................................................
FD542971       --> ..................................................
EX886790       --> ..................................................

               451    -    501
UN16048        --> CTTGTCTTGTCCGCAAGAGAAGGCATCGAAGCAGTGGGAGGACCACATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY432736       <-- CTTGTCTTGTCCGCAAGAGAAGGCATCGAAGCAGTGGGAGGACCACATAT  Raphanus sativus cv GSK3-1
FY438882       <-- ..................................................  Raphanus sativus cv GSK3-1
FY441166       <-- ..................................................  Raphanus sativus cv GSK3-1
EW718924       <-- ..................................................  Raphanus sativus var. oleiformis
FD565763       <-- ..................................................  Raphanus sativus var. oleiformis
EV574346       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY926254       <-- ..................................................  Raphanus sativus var. oleiformis
EX891100       <-- ..................................................  Raphanus sativus var. oleiformis
EX751787       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX901838       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD584102       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD538902       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541328       --> CTCGTCTTGTCCGCAAGAGAAGGCATCGAAGCAGTGGGAGGACCACATAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544081       --> CTCGTCTTGTCCGCAAGAGAAGGCATCGAAGCAGTGGGAGGACCACATAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX898229       --> CTCGTCTTGTCCGCAAGAGAAGGCATCGAAGCAGTGGGAGGACCACATAT  Raphanus sativus cv Early Scarlet Globe
FD561661       --> CTTGTCTTGTCCGCAAGAGAAGGCATCGAAGCAGTGGGAGGACCACATAT  Raphanus sativus var. oleiformis
FD580283       --> CTTGTCTTGTCCGCAAGAGAAGGCATCGAAGCAGTGGGAGGACCACATAT  Raphanus sativus cv Rat-Tail Radish #3870
EY929936       --> CTCGTCTTGTCCGCAAGAGAAGGCATCGAAGCAGTGGGAGGACCACATAT  Raphanus sativus var. oleiformis
FD551540       --> CTTGTCTTGTCCGCAAGAGAAGGCATCGAAGCAGTGGGAGGACCACATAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FY432988       --> CTTGTCTTGTCCGCAAGAGAAGGCATCGAAGCAGTGGGAGGACCACATAT  Raphanus sativus cv GSK3-1
EX886794       --> CTCGTCTTGTCCGCAAGAGAAGGCATCGAAGCAGTGGGAGGACCACATAT  Raphanus sativus var. oleiformis
EW714769       --> ..................................................  Raphanus sativus var. oleiformis
EX747644       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV536436       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542971       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX886790       --> ..................................................  Raphanus sativus var. oleiformis

               501    -    551
UN16048        --> TCCGTTGAAAACAGGAAGGAGAGATGGACGTAAAAGCAGGACTGATATGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY432736       <-- TCCGTTGAAAACAGGAAGGAGAGATGGACGTAAAAGCAGGACTGATATGC
FY438882       <-- .................GGAGAGATGGACGTAAAAGCAGGACTGATATGC
FY441166       <-- ..................................................
EW718924       <-- ..................................................
FD565763       <-- ..................................................
EV574346       <-- ..................................................
EY926254       <-- ..................................................
EX891100       <-- ..................................................
EX751787       <-- ..................................................
EX901838       <-- ..................................................
FD584102       <-- ..................................................
FD538902       <-- ..................................................
FD541328       --> TCCGTTGAAAACAGGAAGGAGAGATGGGCGTAAAAGCAGGACTGACATGC
FD544081       --> TCCGTTGAAAACAGGAAGGAGAGATGGGCGTAAAAGCAGGACTGACATGC
EX898229       --> TCCGTTGAAAACAGGAAGGAGAGATGGACGTAAAAGCAGGACTGATATGC
FD561661       --> TCCGTTGAAAACAGGAAGGAGAGATGGACGTAAAAGCAGGACTGATATGC
FD580283       --> TCCGTTGAAAACAGGAAGGAGAGATGGACGTAAAAGCAGGACTGATATGC
EY929936       --> TCCGTTGAAAACAGGAAGGAGAGATGGACGTAAAAGCAGGACTGATATGC
FD551540       --> TCCGTTGAAAACAGGAAGGAGAGATGGACGTAAAAGCAGGACTGATATGC
FY432988       --> TCCGTTGAAAACAGGAAGGAGAGATGGACGTAAAAGCAGGACTGATATGC
EX886794       --> TCCGTTGAAAACAGGAAGGAGAGATGGACGTAAAAGCAGGACTGATATGC
EW714769       --> ..................................................
EX747644       --> ..................................................
EV536436       --> ..................................................
FD542971       --> ..................................................
EX886790       --> ..................................................

               551    -    601
UN16048        --> TTGAGTCTTACCTTCCCGACCACAACGAGAGTATCTCCGTCGTTCTTGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY432736       <-- TTGAGTCTTACCTTCCCGACCACAACGAGAGTATCTCCGTCGTTCTTGAG
FY438882       <-- TTGAGTCTTACCTTCCCGACCACAACGAGAGTATCTCCGTCGTTCTTGAG
FY441166       <-- ..................................................
EW718924       <-- ..................................................
FD565763       <-- ..................................................
EV574346       <-- ..................................................
EY926254       <-- ..................................................
EX891100       <-- ..................................................
EX751787       <-- ..................................................
EX901838       <-- ..................................................
FD584102       <-- ..................................................
FD538902       <-- ..................................................
FD541328       --> TTGAGTCTTACCTTCCCGACCACAACGAGAGTATCTCCGTCGTTCTTGAG
FD544081       --> TTGAGTCTTACCTTCCCGACCACAACGAGAGTATCTCCGTCGTTCTTGAG
EX898229       --> TTGAGTCTTACCTTCCCGACCACAACGAGAGTATCTCCGTCGTTCTTGAG
FD561661       --> TTGAGTCTTACCTTCCCGACCACAACGAGAGTATCTCCGTCGTTCTTGAG
FD580283       --> TTGAGTCTTACCTTCCCGACCACAACGAGAGTATCTCCGTCGTTCTTGAG
EY929936       --> TTGAGTCTTACCTTCCCGACCACAACGAGAGTATCTCCGTCGTTCTTGAG
FD551540       --> TTGAGTCTTACCTTCCCGACCACAACGAGAGTATCTCCGTCGTTCTTGAG
FY432988       --> TTGAGTCTTACCTTCCCGACCACAACGAGAGTATCTCCGTCGTTCTTGAG
EX886794       --> TTGAGTCTTACCTCCCCGACCACAACGAGAGTATCTCCGTCGTTCTTGAG
EW714769       --> ..................................................
EX747644       --> ..................................................
EV536436       --> ..................................................
FD542971       --> ..................................................
EX886790       --> ..................................................

               601    -    651
UN16048        --> AAGTTCAAGTCCATCGGAATCGACACTCCCGGCCTTGTTGCCCTCCTCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY432736       <-- AAGTTCAAGTCCATCGGAATCGACACTCCCGGCCTTGTTGCCCTCCTCGG
FY438882       <-- AAGTTCAAGTCCATCGGAATCGACACTCCCGGCCTTGTTGCCCTCCTCGG
FY441166       <-- ...............GGAATCGACACTCCCGGCCTTGTTGCCCTCCTCGG
EW718924       <-- .....................................TTGCCCTCCTCGG
FD565763       <-- ...............................................CGG
EV574346       <-- .................................................G
EY926254       <-- ..................................................
EX891100       <-- ..................................................
EX751787       <-- ..................................................
EX901838       <-- ..................................................
FD584102       <-- ..................................................
FD538902       <-- ..................................................
FD541328       --> AAGTTCAAGTCCATCGGAATCGACACTCCCGGCCTTGTTGCCCTCCTCGG
FD544081       --> AAGTTCAAGTCCATCGGAATCGACACTCCCGGCCTTGTTGCCCTCCTCGG
EX898229       --> AAGTTCAAGTCCATCGGAATCGACACTCCCGGCCTTGTTGCCCTCCTCGG
FD561661       --> AAGTTCAAGTCCATCGGAATCGACACTCCCGGCCTTGTTGCCCTCCTCGG
FD580283       --> AAGTTCAAGTCCATCGGAATCGACACTCCCGGCCTTGTTGCCCTCCTCGG
EY929936       --> AAGTTCAAGTCCATCGGCATCGACACTCCCGGCCTTGTTGCCCTCCTCGG
FD551540       --> AAGTTCAAGTCCATCGGTATCGACACTCCCGGCCTTGTTGCCCTCCTCGG
FY432988       --> AAGTTCAAGTCCATCGGAATCGACACTCCCGGCCTTGTTGCCCTCCTCGG
EX886794       --> AAGTTCAAGTCCATCGGCATCGACACTCCCGGCCTTGTTGCCCTCCTCGG
EW714769       --> .........................................CCTCCTCGG
EX747644       --> ..................................................
EV536436       --> ..................................................
FD542971       --> ..................................................
EX886790       --> ..................................................

               651    -    701
UN16048        --> ATCACACAGCGTGGGAAGAACTCACTGTGTGAAGCTGGTTCACCGTTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY432736       <-- ATCACACAGCGTGGGAAGAACTCACTGTGTGAAGTTGGTTCACCGTTTGT  Raphanus sativus cv GSK3-1
FY438882       <-- ATCACACAGCGTGGGAAGAACTCACTGTGTGAAGTTGGTTCACCGTTTGT  Raphanus sativus cv GSK3-1
FY441166       <-- ATCACACAGCGTGGGAAGAACTCACTGTGTGAAGTTGGTTCACCGTTTGT  Raphanus sativus cv GSK3-1
EW718924       <-- ATCACACAGCGTGGGAAGAACTCACTGCGTGAAGCTGGTTCACCGTTTGT  Raphanus sativus var. oleiformis
FD565763       <-- ATCACACAGCGTGGGAAGAACTCACTGTGTGAAGCTGGTTCACCGTTTGT  Raphanus sativus var. oleiformis
EV574346       <-- ATCACACAGCGTGGGAAGAACTCACTGCGTGAAGCTGGTTCACCGTTTGT  Raphanus raphanistrum subsp. landra
EY926254       <-- ..................................................  Raphanus sativus var. oleiformis
EX891100       <-- ..................................................  Raphanus sativus var. oleiformis
EX751787       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX901838       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD584102       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD538902       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541328       --> ATCACACAGCGTGGGAAGAACTCACTGCGTGAAGCTGGTTCACCGTTTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544081       --> ATCACACAGCGTGGGAAGAACTCACTGCGTGAAGCTGGTTCACCGTTTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX898229       --> ATCACACAGCGTGGGAAGAACTCACTGTGTGAAGCTGGTTCACCGTTTGT  Raphanus sativus cv Early Scarlet Globe
FD561661       --> ATCACACAGCGTGGGAAGAACTCACTGTGTGAAGCTGGTTCACCGTTTGT  Raphanus sativus var. oleiformis
FD580283       --> ATCACACAGCGTGGGAAGAACTCACTGTGTGAAGTTGGTTCACCGTTTGT  Raphanus sativus cv Rat-Tail Radish #3870
EY929936       --> ATCACACAGCGTGGGAAGAACTCACTGCGTGAAGCTGGTTCACCGTTTGT  Raphanus sativus var. oleiformis
FD551540       --> ATCACACAGCGTGGGAAGAACTCACTGTGTGAAGCTGGTTCACCGTTTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FY432988       --> ATCACACAGCGTGGGAAGAACTCACTGTGTGAAGTTGGTTCACCGTTTGT  Raphanus sativus cv GSK3-1
EX886794       --> ATCACACAGCGTGGGAAGAACTCACTGCGTGAAGCTGGTTCACCGTTTGT  Raphanus sativus var. oleiformis
EW714769       --> AACACACAGCGTGGGAAGAACTCACTGCGTGAAGCTGGTTCACCGTTTGT  Raphanus sativus var. oleiformis
EX747644       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV536436       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542971       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX886790       --> ..................................................  Raphanus sativus var. oleiformis

               701    -    751
UN16048        --> ACCCTGAGGTGGACCCATCCTTGAACCCGGACCACGTCCCTCACATGCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY432736       <-- ACCCTGAGGTGGACCCATCCTTGAACCCGGACCACGTCCCTCACATGCTA  Raphanus sativus cv GSK3-1
FY438882       <-- ACCCTGAGGTGGACCCATCCTTGAACCCGGACCACGTCCCTCACATGCTA  Raphanus sativus cv GSK3-1
FY441166       <-- ACCCTGAGGTGGACCCATCCTTGAACCCGGACCACGTCCCTCACATGCTA  Raphanus sativus cv GSK3-1
EW718924       <-- ACCCTGAGGTGGACCCATCCTTGAACCCGGACCACGTCCCTCACATGCTA  Raphanus sativus var. oleiformis
FD565763       <-- ACCCTGAGGTGGACCCATCCTTGAACCCGGACCACGTCCCTCACATGCTA  Raphanus sativus var. oleiformis
EV574346       <-- ACCCTGAGGTGGACCCATCCTTGAACCCGGACCACGTCCCTCACATGCTA  Raphanus raphanistrum subsp. landra
EY926254       <-- .......GGTGGACCCATCCTTGAACCCGGACCACGTCCCTCACATGCTA  Raphanus sativus var. oleiformis
EX891100       <-- .........TGGACCCATCCTTGAACCCGGACCACGTCCCTCACATGCTA  Raphanus sativus var. oleiformis
EX751787       <-- ..........................................ACATGCTA  Raphanus raphanistrum subsp. maritimus
EX901838       <-- ..........................................ACATGCTA  Raphanus sativus cv Early Scarlet Globe
FD584102       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD538902       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541328       --> ACCCTGAGGTGGACCCATCCTTGAACCCGGAC-ACGTCCCTCACATGCTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544081       --> ACCCTGAG-TGGACCCATCCTTGAACCCGGAC-ACGTCCCTCACATGCTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX898229       --> ACCC..............................................  Raphanus sativus cv Early Scarlet Globe
FD561661       --> ACCCTGAG-TGGACCCATCCTTGAACCCGGAC-ACGTCCCTCACATGCTA  Raphanus sativus var. oleiformis
FD580283       --> ACCCTGAG-TGGACCCATCCTTGAACCCGGACCACGTCCCTCACATGCTA  Raphanus sativus cv Rat-Tail Radish #3870
EY929936       --> ACCCTGAG-TGGACCCATCCTTGAACCCGGAC-ACGTCCCTCACATGCTA  Raphanus sativus var. oleiformis
FD551540       --> ACCCTGAGGTGGACCCATCCTTGAACCCGGACCACGTCCCTCGCATGCTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY432988       --> ACCCTGAGGTGGACCCATCCTTGAACCCGGACCACGTCCCTCACATGCTA  Raphanus sativus cv GSK3-1
EX886794       --> ACCCTGAGGTGGACCCATCCTTGAACCCGGACCACGTCCCTCACATGCTA  Raphanus sativus var. oleiformis
EW714769       --> ACCCTGAGGTGGACCCATCCTTGAACCCGGACCACGTCCCTCACATGCTA  Raphanus sativus var. oleiformis
EX747644       --> ...........................gGGACCACGTCCCTCACATGCTA  Raphanus raphanistrum subsp. maritimus
EV536436       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542971       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX886790       --> ..................................................  Raphanus sativus var. oleiformis

               751    -    801
UN16048        --> CACAAGTGTCCCGACTCCATCCCTGACCCAAAGGCGGTCCAGTATGTGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY432736       <-- CACAAGTGTCCCGACTCTATCCCTGACCCAAAGGCGGTCCAGTATGTGCG
FY438882       <-- CACAAGTGTCCCGACTCTATCCCTGACCCAAAGGCGGTCCAGTATGTGCG
FY441166       <-- CACAAGTGTCCCGACTCTATCCCTGACCCAAAGGCGGTCCAGTATGTGCG
EW718924       <-- CACAAGTGTCCCGACTCCATCCCTGACCCAAAGGCGGTCCAGTATGTGCG
FD565763       <-- CACAAGTGTCCCGACTCCATCCCTGACCCAAAGGCGGTCCAGTATGTGCG
EV574346       <-- CACAAGTGTCCCGACTCCATCCCTGACCCAAAGGCGGTCCAGTATGTGCG
EY926254       <-- CACAAGTGTCCCGACTCCATCCCTGACCCAAAGGCGGTCCAGTATGTGCG
EX891100       <-- CACAAGTGTCCCGACTCCATCCCTGACCCAAAGGCGGTCCAGTATGTGCG
EX751787       <-- CACAAGTGTCCCGACTCCATCCCTGACCCAAAGGCGGTCCAGTATGTGCG
EX901838       <-- CACAAGTGTCCCGACTCCATCCCTGACCCAAAGGCGGTCCAGTATGTGCG
FD584102       <-- ..................................................
FD538902       <-- ..................................................
FD541328       --> CACAAGTGTC........................................
FD544081       --> CGCAAGTGTCCCGGCTC-ATCC-TGACC-AAAG-CGGTCCAGTATGTGCG
EX898229       --> ..................................................
FD561661       --> CACAAGTGTCCCGACTCCATCCCTGACCCAAAG-CGGTCCAGTATGTGCG
FD580283       --> CACAAGTGTCCCGACTCCATCCCTGACCC.....................
EY929936       --> CACAAGTGTCCCGACTCCATCCCTGACCCAAAG-CGGTCCAGTATGTGCG
FD551540       --> CACAAATGTCCCGACTCCATCCCTGACCCAAAGGCGGTCCAGTATGTGCG
FY432988       --> CACAAGTGTCCCGACTCTATCCCTGACCCAAAGGCGGTCCAGTATGTGCG
EX886794       --> CACAAGTGTCCCGACTCCATCCCTGACCCAAAGGCGGTCCAGTATGTGCG
EW714769       --> CACAAGTGTCCCGACTCCATCCCTGACCCAAAGGCGGTCCAGTATGTGCG
EX747644       --> CACAAGTGTCCCGACTCCATCCCTGACCCAAAGGCGGTCCAGTATGTGCG
EV536436       --> .............ACTCCATCCCTGACCCAAAGGCGGTCCAGTATGTGCG
FD542971       --> ..................................................
EX886790       --> ..................................................

               801    -    851
UN16048        --> TAATGACCGTGGTACACCCATGGTATTAGACAACAACTACTACCGTAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY432736       <-- TAATGACCGTGGTACACCCATGGTATTAGACAACAACTACTACCGTAACA
FY438882       <-- TAATGACCGTGGTACACCCATGGTATTAGACAACAACTACTACCGTAACA
FY441166       <-- TAATGACCGTGGTACACCCATGGTATTAGACAACAACTACTACCGTAACA
EW718924       <-- TAATGACCGTGGTACACCCATGGTATTAGACAACAACTACTACCGTAACA
FD565763       <-- TAATTACCGCGGTACACCCATGGTATTAGACAACAACTACTACCGTAACA
EV574346       <-- TAATGACCGTGGTACACCCATGGTATTAGACAACAACTACTACCGTAACA
EY926254       <-- TAATGACCGTGGTACACCCATGGTATTAGACAACAACTACTACCGTAACA
EX891100       <-- TAATGACCGTGGTACACCCATGGTATTAGACAACAACTACTACCGTAACA
EX751787       <-- TAATGACCGTGGTACACCCATGGTATTAGACAACAACTACTACCGTAACA
EX901838       <-- TAATGACCGTGGTACACCCATGGTATTAGACAACAACTACTACCGTAACA
FD584102       <-- ..................................................
FD538902       <-- ..................................................
FD541328       --> ..................................................
FD544081       --> TAATGACgt.........................................
EX898229       --> ..................................................
FD561661       --> TAATTACCGCGGTACACCCATGGTATTAGACA-C-ACTACTACCGTA...
FD580283       --> ..................................................
EY929936       --> TAATGAC-GTGGT.....................................
FD551540       --> TAATGACCGTGGTACACCCATGGTATTAGACA-CAACTACTACCGTAACA
FY432988       --> TAATGACCGTGGTACACCCATGGTATTAGACAACAACTACTACCGTAACA
EX886794       --> TAATGACCGTGGTACACCCATGGTATTAGACAACAACTACTACCGTAACA
EW714769       --> TAATGACCGTGGTACACCCATGGTATTAGACAACAACTACTACCGTAACA
EX747644       --> TAATGACCGTGGTACACCCATGGTATTAGACAACAACTACTACCGTAACA
EV536436       --> TAATGACCGTGGTACACCCATGGTATTAGACAAC---TACTACCGTAACA
FD542971       --> ..................................................
EX886790       --> ..................................................

               851    -    901
UN16048        --> TCCTAGACAACAAGGGTTTGCTCCTTGTGGACCACCAGCTCGCACACGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY432736       <-- TCCTAGACAACAAGGGTTTGCTCCTTGTGGACCACCAGCTCGCACACGAC
FY438882       <-- TCCTAGACAACAAGGGTTTGCTCCTTGTGGACCACCAGCTCGCACACGAC
FY441166       <-- TCCTAGACAACAAGGGTTTGCTCCTTGTGGACCACCAGCTCGCACACGAC
EW718924       <-- TCCTAGACAACAAGGGTTTGCTCCTTGTGGACCACCAGCTCGCACACGAC
FD565763       <-- TCCTAGACAACAAGGGTTTGCTCCTTGTGGACCACCAGCTCGCACACGAC
EV574346       <-- TCCTAGACAACAAGGGTTTGCTCCTTGTGGACCACCAGCTCGCACACGAC
EY926254       <-- TCCTAGACAACAAGGGTTTGCTCCTTGTGGACCACCAGCTCGCACACGAC
EX891100       <-- TCCTAGACAACAAGGGTTTGCTCCTTGTGGACCACCAGCTCGCACACGAC
EX751787       <-- TCCTAGACAACAAGGGTTTGCTCCTTGTGGACCACCAGCTCGCACACGAC
EX901838       <-- TCCTAGACAACAAGGGTTTGCTCCTTGTGGACCACCAGCTCGCACACGAC
FD584102       <-- ..................................................
FD538902       <-- ..................................................
FD541328       --> ..................................................
FD544081       --> ..................................................
EX898229       --> ..................................................
FD561661       --> ..................................................
FD580283       --> ..................................................
EY929936       --> ..................................................
FD551540       --> TCCTAGACAA........................................
FY432988       --> TCCTAGACAACAAGGGTTTGCTCCTTGTGGACCACCAGCTCGCACACGAC
EX886794       --> TCCTAGACAACAAGGGTTTGCTCCTTGTGGACCACCAGCTCGCACACGAC
EW714769       --> TCCTAGACAACAAGGGTTTGCTCCTTGTGGACCACCAGCTCGCACACGAC
EX747644       --> TCCTAGACAACAAGGGTTTGCTCCTTGTGGACCACCAGCTCGCACACGAC
EV536436       --> TCCTAGACAACAAGGGTTTGCTCCTTGTGAACCACCAGCTCGCACACGAC
FD542971       --> ..................................................
EX886790       --> ..................................................

               901    -    951
UN16048        --> AAACGAACCAGACCAATTGTTAAGAAGATGGCTAAGGACCAGGCTTACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY432736       <-- AAACGAACCAGACCAATTGTTAAGAAGATGGCTAAGGACCAGGCTTACTT
FY438882       <-- AAACGAACCAGACCAATTGTTAAGAAGATGGCTAAGGACCAGGCTTACTT
FY441166       <-- AAACGAACCAGACCAATTGTTAAGAAGATGGCTAAGGACCAGGCTTACTT
EW718924       <-- AAACGAACCAGACCAATTGTTAAGAAGATGGCTAAGGACCAGGCTTACTT
FD565763       <-- AAACGAACCAGACCAATTGCTAAGAAGATGGCTAAGGACCAGGCTTACTT
EV574346       <-- AAACGAACCAGACCAATTGTTAAGAAGATGGCTAAGGACCAGGCTTACTT
EY926254       <-- AAACGAACCAGACCAATTGTTAAGAAGATGGCTAAGGACCAGGCTTACTT
EX891100       <-- AAACGAACCAGACCAATTGTTAAGAAGATGGCTAAGGACCAGGCTTACTT
EX751787       <-- AAACGAACCAGACCAATTGTTAAGAAGATGGCTAAGGACCAGGCTTACTT
EX901838       <-- AAACGAACCAGACCAATTGTTAAGAAGATGGCTAAGGACCAGGCTTACTT
FD584102       <-- ..................................................
FD538902       <-- ..................................................
FD541328       --> ..................................................
FD544081       --> ..................................................
EX898229       --> ..................................................
FD561661       --> ..................................................
FD580283       --> ..................................................
EY929936       --> ..................................................
FD551540       --> ..................................................
FY432988       --> AAACGAACCAGACCAATTGTTAAGAAGATGGCTAAGGACCAGGCTTACTT
EX886794       --> AAACGAACCAGACCAATTGTTAAGAAGATGGCTAAGGACCAGGCTTACTT
EW714769       --> AAACGAACCAGACCAATTGTTAAGAAGATGGCTAAGGACCAGGCTTACTT
EX747644       --> AAACGAACCAGACCAATTGTTAAGAAGATGGCTAAGGACCAGGCTTACTT
EV536436       --> AAACGAACCAGACCAATTGTTAAGAAGATGGCTAAGGACCAGGCTTACTT
FD542971       --> ..................................................
EX886790       --> ..................................................

               951    -   1001
UN16048        --> CTTCAAGGAGTTTACTAGAGCCATCCAGATCTTGTCTGAGAACAACCCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY432736       <-- CTTCAAGGAGTTTACTAGAGCCATCCAAATCTTGTCTGAGAACAACCCTT  Raphanus sativus cv GSK3-1
FY438882       <-- CTTCAAGGAGTTTACTAGAGCCATCCAAATCTTGTCTGAGAACAACCCTT  Raphanus sativus cv GSK3-1
FY441166       <-- CTTCAAGGAGTTTACTAGAGCCATCCAAATCTTGTCTGAGAACAACCCTT  Raphanus sativus cv GSK3-1
EW718924       <-- CTTCAAGGAGTTTACTAGAGCCATCCAGATCTTGTCTGAGAACAACCCTT  Raphanus sativus var. oleiformis
FD565763       <-- CTTCAAGGAGTTTACTAGAGCCATCCAGATCTTGTTTGAGAACAACCCTT  Raphanus sativus var. oleiformis
EV574346       <-- CTTCAAGGAGTTTACTAGAGCCATCCAGATCTTGTTTGAGAACAACCCTT  Raphanus raphanistrum subsp. landra
EY926254       <-- CTTCAAGGAGTTTACTAGAGCCATCCAGATCTTGTCTGAGAACAACCCTT  Raphanus sativus var. oleiformis
EX891100       <-- CTTCAAGGAGTTTACTAGAGCCATCCAGATCTTGTCTGAGAACAACCCTT  Raphanus sativus var. oleiformis
EX751787       <-- CTTCAAGGAGTTTACTAGAGCCATCCAGATCTTGTCTGAGAACAACCCTT  Raphanus raphanistrum subsp. maritimus
EX901838       <-- CTTCAAGGAGTTTACTAGAGCCATCCAGATCTTGTCTGAGAACAACCCTT  Raphanus sativus cv Early Scarlet Globe
FD584102       <-- ..................................TCTGAGAACAACCCTT  Raphanus sativus cv Rat-Tail Radish #3870
FD538902       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541328       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544081       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX898229       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD561661       --> ..................................................  Raphanus sativus var. oleiformis
FD580283       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY929936       --> ..................................................  Raphanus sativus var. oleiformis
FD551540       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY432988       --> CTTCAAGGAGTTTACTAGAGCCATCCAAATCTTGTCTGAGAACAACCCTT  Raphanus sativus cv GSK3-1
EX886794       --> CTTCAAGGAGTTTACTAGAGCCATCCAGATCTTGTCTGAGAACAACCCTT  Raphanus sativus var. oleiformis
EW714769       --> CTTCAAGGAGTTTACTAGAGCCATCCAGATCTTGTCTGAGAACAACCCTT  Raphanus sativus var. oleiformis
EX747644       --> CTTCAAGGAGTTTACTAGAGCCATCCAGATCTTGTCTGAGAACAACCCTT  Raphanus raphanistrum subsp. maritimus
EV536436       --> CTTCAAGGAGTTTACTAGAGCCATCCAGATCTTGTCTGAGAACAACCCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542971       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX886790       --> ..................................................  Raphanus sativus var. oleiformis

               1001   -   1051
UN16048        --> TGACTGGTTCCAAGGGTGAGATCAGGAAGCAGTGCAATCTCGCAAACAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY432736       <-- TGACTGGTTCCAAGGGTGAGATCAGGAAGCAGTGCAATCTCGCAAACAAG
FY438882       <-- TGACTGGTTCCAAGGGTGAGATCAGGAAGCAGTGCAATCTCGCAAACAAG
FY441166       <-- TGACTGGTTCCAAGGGTGAGATCAGGAAGCAGTGCAATCTCGCAAACAAG
EW718924       <-- TGACTGGTTCCAAGGGTGAGATCAGGAAGCAGTGCAATCTCGCAAACAAG
FD565763       <-- TGACGGGTTCCAAGGGTGAGATCAGGAAGCAGTGCAATCTCGCAAACAAG
EV574346       <-- TGACTGGTTCCAAGGGTGAGATCAGGAAGCAGTGCAATCTCGCAAACAAG
EY926254       <-- TGACTGGTTCCAAGGGTGAGATCAGGAAGCAGTGCAATCTCGCAAACAAG
EX891100       <-- TGACTGGTTCCAAGGGTGAGATCAGGAAGCAGTGCAATCTCGCAAACAAG
EX751787       <-- TGACTGGTTCCAAGGGTGAGATCAGGAAGCAGTGCAATCTCGCAAACAAG
EX901838       <-- TGACTGGTTCCAAGGGTGAGATCAGGAAGCAGTGCAATCTCGCAAACAAG
FD584102       <-- TGACTGGTTCCAAGGGTGAGATCAGGAAGCAGTGCAATCTCGCAAACAAG
FD538902       <-- ..................................................
FD541328       --> ..................................................
FD544081       --> ..................................................
EX898229       --> ..................................................
FD561661       --> ..................................................
FD580283       --> ..................................................
EY929936       --> ..................................................
FD551540       --> ..................................................
FY432988       --> TGACTGGTTCCAAGGGTGAGATCAGGAAGCAGTGCAATCTCGCAAACAAG
EX886794       --> TGACTGGTTCCAAGGGTGAGATCAGGAAGCAGTGCAATCTCGCAAACAAG
EW714769       --> TGACTGGTTCCAAGGGTGAGATCAGGAAGCAGTGCAATCTCGCAAACAAG
EX747644       --> TGACTGGTTCCAAGGGTGAGATCAGGAAGCAGTGCAATCTCGCAAACAAG
EV536436       --> TGACTGGTTCCAAGGGTGAGATCAGGAAGCAGTGCAATCTCGCAAACAAG
FD542971       --> ..................................................
EX886790       --> ..................................................

               1051   -   1101
UN16048        --> ATTCACTGAGATTGCAAAGAGTGACAAG---G-GAGAGAGAGAGCCTCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY432736       <-- ATTCACTGAGATTGCAAAGAGTGACAAGAGAGAGAGAGAGAGAGCCTCTT  Raphanus sativus cv GSK3-1
FY438882       <-- ATTCACTGAGATTGCAAAGAGTGACAAGAGAGAGAGAGAGAGAGCCTCTT  Raphanus sativus cv GSK3-1
FY441166       <-- ATTCACTGAGATTGCAAAGAGTGACAAGAGAGAGAGAGAGAGAGCCTCTT  Raphanus sativus cv GSK3-1
EW718924       <-- ATTCACTGAGATTGCAAAGAGTGACAAG---G-GAGAGAGAGAGCCTTTA  Raphanus sativus var. oleiformis
FD565763       <-- ATTCACTGAGATTGCAAAGATTGACAAG--AGAGAGAGAGAGAGCCTCTT  Raphanus sativus var. oleiformis
EV574346       <-- ATTCACTGAGATTGCAAAGAGTGACAAG---G-GAGAGAGAGAGCCTCTA  Raphanus raphanistrum subsp. landra
EY926254       <-- ATTCACTGAGATTGCAAAGAGTGACAAG---G-GAGAGAGAGAGCCTCTA  Raphanus sativus var. oleiformis
EX891100       <-- ATTCACTGAGATTGCAAAGAGTGACAAG---G-GAGAGAGAGAGCCTCTA  Raphanus sativus var. oleiformis
EX751787       <-- ATTCACTGAGATTGCAAAGAGTGACAAG---G-GAGAGAGAGAGCCTCTA  Raphanus raphanistrum subsp. maritimus
EX901838       <-- ATTCACTGAGATTGCAAAGAGTGACAAG---G-GAGAGAGAGAGCCTCTT  Raphanus sativus cv Early Scarlet Globe
FD584102       <-- ATTCACTGAGATTGCAAAGAGAGACAAG--AGAGAGAGAGAGAGCCTCTT  Raphanus sativus cv Rat-Tail Radish #3870
FD538902       <-- ..............................................gctt  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541328       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544081       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX898229       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD561661       --> ..................................................  Raphanus sativus var. oleiformis
FD580283       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY929936       --> ..................................................  Raphanus sativus var. oleiformis
FD551540       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY432988       --> ATTCACTGAGATTGCAAAGAGTGA..........................  Raphanus sativus cv GSK3-1
EX886794       --> ATTCACTGAGATTGCAAAGAGTGACAAG---G-GAGAGAGAGAGCCTCTA  Raphanus sativus var. oleiformis
EW714769       --> ATTCACTGAGATTGCAAAGAGTGACAAG---G-GAGAGAGAGAGCCTTTA  Raphanus sativus var. oleiformis
EX747644       --> ATTCACTGAGATTGCAAAGAGTGACAAG---G-GAGAGAGAGAGCCTCTA  Raphanus raphanistrum subsp. maritimus
EV536436       --> ATTCACTGAGATTGCAAAGAGTGACAAG---A-GAGAGAGAGAGCCTCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542971       --> ..............................................gctt  Raphanus raphanistrum subsp. raphanistrum (MS)
EX886790       --> ..................................................  Raphanus sativus var. oleiformis

               1101   -   1151
UN16048        --> TGTGTTTTGGGTTCTCTCTGCACTTTCTTGGCATCGAACCAAGATGAATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY432736       <-- TGTGTTTTGGGTTCTCTCTGCACTTTCTTGGCATCGAACCAAGATGAATA
FY438882       <-- TGTGTTTTGGGTTCTCTCTGCACTTTCTTGGCATCGAACCAAGATGAATA
FY441166       <-- TGTGTTTTGGGTTCTCTCTGCACTTTCTTGGCATCGAACCAAGATGAATA
EW718924       <-- TGTGTTTTGGGTTCTCTCTGCACTTTCTTGGCATCGAACCAAGATGAATA
FD565763       <-- TGTGTTTTGGGTTCTCTTTGCACTTTCTTGGCATCGAACCAAGATGAATA
EV574346       <-- TGTGTTTTGGGTTCTCTCTGCACTTTCTTGGCATCGAACCAAGATGAATA
EY926254       <-- TGTGTTTTGGGTTCTCTCTGCACTTTCTTGGCATCGAACCAAGATGAATA
EX891100       <-- TGTGTTTTGGGTTCTCTCTGCACTTTCTTGGCGTCGAACCAAGATGAATA
EX751787       <-- TGTGTTTTGGGTTCTTTCTGCACTTTCTTGGCATCGAACCAAGATGAATA
EX901838       <-- TGTGTTTTGGGTTCTCTCTGCACTTTCTTGGCATCGAACCAAGATGAATA
FD584102       <-- TGTGTTTTGGGTTCTCTCTGCACTTTCTTGGCATCGAACCAAGATGAATA
FD538902       <-- TGTGTTTTGGGTTCTCTCTGCACTTTCTTGGCATCGAACCAAGATGAATA
FD541328       --> ..................................................
FD544081       --> ..................................................
EX898229       --> ..................................................
FD561661       --> ..................................................
FD580283       --> ..................................................
EY929936       --> ..................................................
FD551540       --> ..................................................
FY432988       --> ..................................................
EX886794       --> TGTGTTTTGGGTTCTCTCTGCACTTTCTTG....................
EW714769       --> TGTGTTTTGGGTTCTCTCTGCACTTTCTTGGCATCGAACCAAGATGAATA
EX747644       --> TGTGTTTTGGGTTCTCTCTGCACTTTCTTGGCATCGAACCAAGATGAATA
EV536436       --> TGTGTTTTGGGTTCTCTCTGCACTTTCTTGGCATCGAACCAAGATGAATA
FD542971       --> TGTGTTTTGGGTTCTCTCTGCACTTTCTTGGCATCGAACCAAGATGAATA
EX886790       --> ..............................GCATCGAACCAAGATGAATA

               1151   -   1201
UN16048        --> ATATTATATTTTAAGAAGTTAAAAATGAAATGAAGGGTGATGATGATGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY432736       <-- ATATTATATTTTAAGAAGTTAAAAATGAAATGAAGGGTGATGATGATGAT
FY438882       <-- ATATTATATTTTAAGAAGTTAAAAATGAAATGAAGGGTGATGATGATGAT
FY441166       <-- ATATTATATTTTAAGAAGTTAAAAATGAAATGAAGGGTGATGATGATGAT
EW718924       <-- ATATTATATTTTAAGAAGTTAAAAATGAAATGAAGGGTGATGATGATGAT
FD565763       <-- ATATTATACTTTAAGAAGTTAAAAATGAAATGAAGGGTGATGATGA---T
EV574346       <-- ATATTATATTTTAAGAAGTTAAAAATGAAATGAAGGGTGATGATGATGAT
EY926254       <-- ATATTATATTTTAAGAAGTTAAAAATGAAATGAAGGGTGATGATGATGAT
EX891100       <-- ATATTATATTTTAAGAAGTTAAAAATGAAATGAAGGGTGATGATGATGAT
EX751787       <-- ATATTATATTTTAAGAAGTTAAAAATGAAATGAAGGGTGATGATGATGAT
EX901838       <-- ATATTATATTTTAAGAAGTTAAAAATGAAATGAAGGGTGATGATGATGAT
FD584102       <-- GTATTATATTTTAAGAAGTTAAAAATGAAATGAAGGGTGATGATGATGAT
FD538902       <-- ATATTATATTTTAAGAAGTTAAAAATGAAATGAAGGGTGATGATGATGAT
FD541328       --> ..................................................
FD544081       --> ..................................................
EX898229       --> ..................................................
FD561661       --> ..................................................
FD580283       --> ..................................................
EY929936       --> ..................................................
FD551540       --> ..................................................
FY432988       --> ..................................................
EX886794       --> ..................................................
EW714769       --> ATATTATATTTTAAGAAGTTAAAAATGAAATGAAGGGTGATGATGATGAT
EX747644       --> ATATTATATTTTAAGAAGTTAAAAATGAAATGAAGGGTGATGATGATGAT
EV536436       --> ATATTATATTTTAAGAAGTTAAAAATGAAATGAAGGGTGATGATGATGAT
FD542971       --> ATATTATATTTTAAGAAGTTAAAAATGAAATGAAGGGTGATGATGATGAT
EX886790       --> ATATTATACTTTAAGAAGTTAAAAATGAAATGAAGGGTGATGATGATG--

               1201   -   1251
UN16048        --> GTATGCATCATAGTGGTGACCACATATGCACTCTTCTTTTTGTGTGTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY432736       <-- GTATGCATCATAGTGGTGACCACATATGCAC...................
FY438882       <-- GTATGCATCATAGTGGTGACCACATATGCACTCTTCTTTTTGTGTGTTGT
FY441166       <-- GTATGCATCATAGTGGTGACCACATATGCACTCTTCTTTTTGTGTGTTGT
EW718924       <-- GTATGCATCATAGTGGTGACCACATATGCACTCTTCTTTTTGTGTGTTGT
FD565763       <-- GTATGCATCATAGTGGTGACCACATATGCACTTTTCTTTTTGTGTGTTGT
EV574346       <-- GTATGCATCATAGTGGTGACCACATATGCACTCTTCTTTTTGTGTGTTGT
EY926254       <-- GTATGCATCATAGTGGTGACCACATATGCACTCTTCTTTTTGTGTGTTGT
EX891100       <-- GTATGCATCATAGTGGTGACCACATATGCACTCTTCTTTTTGTGTGTTGT
EX751787       <-- GTACGCATCATAGTGGTGACCACATATGCACTTTTCTTTTTGTGTGTTGT
EX901838       <-- GTATGCATCATAGTGGTGACCACATATGCACTCTTCTTTTTGTGTGTTGT
FD584102       <-- GTATGCATCATAGTGGTGACCACATATGCACTCTTCTTTTTGTGTGTTGT
FD538902       <-- GTATGCATCATAGTGGTGACCACATATGCACTCTTCTTTTTGTGTGTTGT
FD541328       --> ..................................................
FD544081       --> ..................................................
EX898229       --> ..................................................
FD561661       --> ..................................................
FD580283       --> ..................................................
EY929936       --> ..................................................
FD551540       --> ..................................................
FY432988       --> ..................................................
EX886794       --> ..................................................
EW714769       --> GTATGCATCATAGTGGTGACCACATATGCACTCTTCTTTTTGTGTGTTGT
EX747644       --> GTACGCATCATAGTGGTGACCACATATGCACTCTTCTTTTTGTGTGTTGT
EV536436       --> GTATGCATCATAGTGGTGACCACATATGCACTCTTCTTTTTGTGTGTTGT
FD542971       --> GTATGCATCATAGTGGTGACCACATATGCACTCTTCTTTTTGTGTGTTGT
EX886790       --> -TATGCATCATAGTGGTGACCACATATGCACTCTTCTTTTTGTGTGTTGT

               1251   -   1301
UN16048        --> TTTAGCCTTAATGCTTTAATTATGGTGGTAGTCGCCTTTTGAGTTAATTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY432736       <-- ..................................................
FY438882       <-- TTTAGCCTTAATGCTTTAATTATGGTGGTAGTCGCCTTTTGAGTTAATTA
FY441166       <-- TTTAGCCTTAATGCTTTAATTATGGTGGTAGTCGCCTTTTGAGTTAATTA
EW718924       <-- TTTAGCCTTAATGCTTTAATTATGGTGGTAGTCGCCTTTTGAGTTAATTA
FD565763       <-- TTTAGCCTTAATGCTTTAATTATGGTGGTAGTCGCCTTTTGAGTTTATTA
EV574346       <-- TTTAGCCTTAATGCTTTAATTATGGTGGTAGTCGCCTTTTGAGTTAATTA
EY926254       <-- TTTAGCCTTAATGCTTTAATTATGGTGGTAGTCGCCTTTTGAGTTAATTA
EX891100       <-- TTTAGCCTTAATGCTTTAATTATGGTGGTAGTCGCCTTTTGAGTTAATTA
EX751787       <-- TTTAGCCTTAATGCTTTAATTATGGTGGTAGTCGCCTTTTGAGTTAATTA
EX901838       <-- TTTAGCCTTAATGCTTTAATTATGGTGGTAGTCGCCTTTTGAGTTAATTA
FD584102       <-- TTTAGCCTTAATGCTTTAATTATGGTGGTAGTCGCCTTTTGAGTTAATTA
FD538902       <-- TTTAGCCTTAATGCTTTAATTATGGTGGTAGTCGCCTTTGGAGTT.....
FD541328       --> ..................................................
FD544081       --> ..................................................
EX898229       --> ..................................................
FD561661       --> ..................................................
FD580283       --> ..................................................
EY929936       --> ..................................................
FD551540       --> ..................................................
FY432988       --> ..................................................
EX886794       --> ..................................................
EW714769       --> TTTAGCCTTAATGCTTTAATTATGGTGGTAGTCGCCTTTTGAGTTAATTA
EX747644       --> TTTAGCCTTAATGCTTTAATTATGGTGGTAGTCGCCTTTTGAGTTAATTA
EV536436       --> TTTAGCCTTAATGCTTTAATTATGGTGGTAGTCGCCTTTTGAGTTAATTA
FD542971       --> TTTAGCCTTAATGCTTTAATTATGGTGGTAGTCGCCTTTGGAGTT.....
EX886790       --> TTTAGCCTTAATGCTTTAATTATGGTGGTAGTCGCCTTTTGAGTTTATTA

               1301   -   1351
UN16048        --> ATCTGTATGTTGTTTCTTTGTTGATTTTGGGTTTGTGGTGGGGTTGATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY432736       <-- ..................................................
FY438882       <-- ATCTGTATGTTGTTTCTTTGTTGATTTTGGGTTTGTGGTGGGGTTGATGA
FY441166       <-- ATCTGTATGTTGTTTCTTTGTTGATTTTGGGTTTGTGGTGGGGTTGATGA
EW718924       <-- ATCTGTATGTTGTTTCTTTGTTGATTTTGGGTTTGTGGTGGGGTTGATGA
FD565763       <-- ATCTGTATGTTGTTTCTTTGTTGATTTTGGGTTTGTGGTGGGGTTGATGA
EV574346       <-- ATCTGTATGTTGTTTCTTTGTTGATTTTGGGTTTGTGGCGGGGTTGATGA
EY926254       <-- ATCTGTATGTTGTTTCTTTGTTGATTTTGGGTTTGTGGTGGGGTTGATGA
EX891100       <-- ATCTGTATGTTGTTTCTTTGTTGATTTTGGGTTTGTGGTGGGGTTGATGA
EX751787       <-- ATCTGTATGTTGTTTCTTTGTTGATTTTGGGTTTGTGGTGGGGTTGATGA
EX901838       <-- ATATGTATGTTGTTTCTTTGTTGATTTTGGGTTTGTGGTGGGGTTGATGA
FD584102       <-- ATCTGTATGTTGTTTCTTTGTTGATTTTGGGTTTGTGGTGGGGTTGATGA
FD538902       <-- ..................................................
FD541328       --> ..................................................
FD544081       --> ..................................................
EX898229       --> ..................................................
FD561661       --> ..................................................
FD580283       --> ..................................................
EY929936       --> ..................................................
FD551540       --> ..................................................
FY432988       --> ..................................................
EX886794       --> ..................................................
EW714769       --> ATCTGTATGTTGTTTCTTTGTTGATTTT......................
EX747644       --> ATCTGTATGTTGTTTCTTTGTTGATTTTGGGTTTGTGGTGGGGTTGATGA
EV536436       --> ATCTGTATGTTGTTTCTTTGTTGATTTTGGGTTTGTGGTGGGGTTGATGA
FD542971       --> ..................................................
EX886790       --> ATCTGTATGTTGTTTCTTTGTTGATTTTGGGTTTGTGGTGGGGTTGACGA

               1351   -   1401
UN16048        --> TGGAATGGATGTATGATATGATGGACTGTGTGTTATGTAATAATAAGTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY432736       <-- ..................................................  Raphanus sativus cv GSK3-1
FY438882       <-- TGGAATGGATGTATGATATGATGGACTGTGTGTTATGTAATAATAAG...  Raphanus sativus cv GSK3-1
FY441166       <-- TGGAACGGAAGTGTGATATGATGGACTGTGTGTTATGTAATAATAAGTGG  Raphanus sativus cv GSK3-1
EW718924       <-- TGGAATGGATGTATGATATGATGAACTGTGTGTTATGTAATAATAAGTGG  Raphanus sativus var. oleiformis
FD565763       <-- TGGAATGGATGTATGATATGATGGACTGTGTGTTATGTAATAATAAGTGG  Raphanus sativus var. oleiformis
EV574346       <-- TGGAATGGATGTATGATATGATGGACTGTGTGTTATGTAATAATAAGTGG  Raphanus raphanistrum subsp. landra
EY926254       <-- TGGAATGGATGTATGATATGATGAACTGTGTGTTATGTAATAATAAGTGG  Raphanus sativus var. oleiformis
EX891100       <-- TGGAATGGATGTATGATATGATGAACTGTGTGTTATGTAATAATAAGTGG  Raphanus sativus var. oleiformis
EX751787       <-- TGGAATGGATGTATGATATGATGAACTGTGTGTTATGTAATAATAAGTGG  Raphanus raphanistrum subsp. maritimus
EX901838       <-- TGGAATGGATGTATGATATGATGGACTGTGTGTTATGTAATAATAAGTGG  Raphanus sativus cv Early Scarlet Globe
FD584102       <-- TGGAATGGATGTATGATATGATGGACTGTGTGTTATGTAATAATAAGTGG  Raphanus sativus cv Rat-Tail Radish #3870
FD538902       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541328       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544081       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX898229       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD561661       --> ..................................................  Raphanus sativus var. oleiformis
FD580283       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY929936       --> ..................................................  Raphanus sativus var. oleiformis
FD551540       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY432988       --> ..................................................  Raphanus sativus cv GSK3-1
EX886794       --> ..................................................  Raphanus sativus var. oleiformis
EW714769       --> ..................................................  Raphanus sativus var. oleiformis
EX747644       --> TGGAATGGATGTATGATATGATGAACTGTGTGTTATGTAATAATAAGTGG  Raphanus raphanistrum subsp. maritimus
EV536436       --> TGGAATGGATGTATGATATGATGGACTGTGTGTTATGTAATAATAAGTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542971       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX886790       --> TGGAATGGATGTATGATATGATGGACTGTGTGTTATGTAATAATAAGTGG  Raphanus sativus var. oleiformis

               1401   -   1451
UN16048        --> TGAAATCGTACTTTAATCTTTGATCTAGTTTCATGGAATAATATAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY432736       <-- ...............................................
FY438882       <-- ...............................................
FY441166       <-- TGAAAT.........................................
EW718924       <-- TGAAATCGTACTTT.................................
FD565763       <-- TGAAATCGTACTTTAATCTTTG.........................
EV574346       <-- CGAAATCGTACTTTA-TCTTTGATCTAGTTTCATGGAATAATATAAG
EY926254       <-- TGAAATCGTACTTTAATC.............................
EX891100       <-- TGAAATCGTACTTT.................................
EX751787       <-- TGAAATCGc......................................
EX901838       <-- TGAAATCGTACTTTAATC.............................
FD584102       <-- TGAAATCGTACTTTAATCTTTGATCT.....................
FD538902       <-- ...............................................
FD541328       --> ...............................................
FD544081       --> ...............................................
EX898229       --> ...............................................
FD561661       --> ...............................................
FD580283       --> ...............................................
EY929936       --> ...............................................
FD551540       --> ...............................................
FY432988       --> ...............................................
EX886794       --> ...............................................
EW714769       --> ...............................................
EX747644       --> TGAAATCGc......................................
EV536436       --> TGAAATCGTACCTTAATTTTTGAT.......................
FD542971       --> ...............................................
EX886790       --> CGAAATCGTACTTTAATCT............................