Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN16052

               0      -     50
UN16052        --> .CCAAACGAACATGACTTATATTGATGTACTATTGGATGATTGTAGCATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY915354       <-- ..................................................
FD982294       <-- ..................................................
FY431341       <-- ..................................................
EX887839       <-- ..................................................
EY914237       <-- ..................................................
FD963742       <-- ..................................................
FD948656       <-- ..................................................
EX897457       <-- ..................................................
EW730213       --> gCCAAACGAACATGACTTATATTGATGTACTATTGGATGATTGTAGCATG
EX901211       --> aCCAAACGAACATGACTTATATTGATGTACTATTGGATGATTGTAGCATG
EX891889       --> ......................................ggTTGTAGCATG
EY911810       --> ..........................................GTAGCATG
EY911215       --> ..........................................gcAGCATG

               50     -    100
UN16052        --> TACATTAAATTAATCAGTGTCGTAAACACAAATAAA-CATCTATTTCCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY915354       <-- ..................................................
FD982294       <-- ..................................................
FY431341       <-- ..................................................
EX887839       <-- ..................................................
EY914237       <-- ..................................................
FD963742       <-- ..................................................
FD948656       <-- ..................................................
EX897457       <-- ..................................................
EW730213       --> TACATTAAATTAATCAGTGTCGTAAACACAAATAAA-CATCTATTTCCCG
EX901211       --> TACATTAAATTAATCAGTGTCGTAAACACAAATAAA-CATCTATTTCCCG
EX891889       --> TACATTAAATTAATCAGTGTCGAAAACACAAATAAA-CATCTATTTCCCG
EY911810       --> TACATTAAATTAATCAGTGTCGTAAACACAAATAAAACATCTATTTCCCG
EY911215       --> TACATTAAATTAATCAGTGTCGTACACACACATAAA-CATCGATTTCCCG

               100    -    150
UN16052        --> TCTAGACGAACGCTTCAGCGCCGATATATGTAAATAAGAATAAGATATAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY915354       <-- ..................................................
FD982294       <-- ..................................................
FY431341       <-- ..................................................
EX887839       <-- ..................................................
EY914237       <-- ..................................................
FD963742       <-- ..................................................
FD948656       <-- ..................................................
EX897457       <-- ..................................................
EW730213       --> TCTAGACGAACGCTTCAGCGCCGATATATGTAAATAAGAATAAGATATAC
EX901211       --> TCTAGACGAACGCTTCAGCGCCGATATATGTAAATAAGAATAAGATATAC
EX891889       --> TCTAGACGAACGCTTCAGCGCCGATATATGTAAATAAGAATAAGATATAC
EY911810       --> TCTAGACGAACGCTTCAGCGCCGATATATGTAAATAAGAATAAGATATAC
EY911215       --> TCTAGACGAACGCTTCAGCGCCGATATATGTAAATAAGAATAAGATATAC

               150    -    200
UN16052        --> AATAACATATGGTGAAGGGTCTATTCTATGGTCTCTTTGAAGGGTCCAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY915354       <-- ..................................................
FD982294       <-- ..................................................
FY431341       <-- ..................................................
EX887839       <-- ..................................................
EY914237       <-- ..................................................
FD963742       <-- ..................................................
FD948656       <-- ..................................................
EX897457       <-- ..................................................
EW730213       --> AATAACATATGGTGAAGGGTCTATTCTATGGTCTCTTTGAAGGGTCCAGA
EX901211       --> AATAACATATGGTGAAGGGTCTATTCTATGGTCTCTTTGAAGGGTCCAGA
EX891889       --> AATAACATATGGTGAAGTGTCTATTCTATGGTCTCTTTGAAGGGTCCAGA
EY911810       --> AATAACATATAGTGAAGGGTCTATTCTATGGTCTCTTTGAAGGGTCCAGA
EY911215       --> AATAACATATGGTGAAGTGTCTATTCTATGGTCTCTTTGAAGGGTCCAGA

               200    -    250
UN16052        --> TTCATGCAACAGCTTGATGACATAATCCACCTGATCTGATTCACGTACTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY915354       <-- ..................................................
FD982294       <-- ..................................................
FY431341       <-- ..................................................
EX887839       <-- ..................................................
EY914237       <-- ..................................................
FD963742       <-- ..................................................
FD948656       <-- ..................................................
EX897457       <-- ..................................................
EW730213       --> CTCATGCAACAGCTTGATAACATAATCCACCTGATCTGATTCACGTACTA
EX901211       --> CTCATGCAACAGCTTGATAACATAATCCACCTGATCTGATTCACGTACTA
EX891889       --> TTCATGCAACAGCTTAATGACATAATCCACCTGATTTGATTCACGTACTA
EY911810       --> TTCATGCAACAGCTTGATGACATAACCCACCTGATCTGATTCACGTACTA
EY911215       --> TTCATGCAACAGCTTGATGACATAATCCACCTGATTTGATTCACGTACTA

               250    -    300
UN16052        --> AAAACTCGTCTATGGCTTGCCTGAAGCCTTCATCAATAATATAATGGCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY915354       <-- ..................................................
FD982294       <-- ..................................................
FY431341       <-- ..................................................
EX887839       <-- ..................................................
EY914237       <-- ..................................................
FD963742       <-- ..................................................
FD948656       <-- ..................................................
EX897457       <-- ..................................................
EW730213       --> AAAACTCGTCTATGGCTTGCCTGAAGCCTTCATCAATAATATAATGGCAA
EX901211       --> AAAACTCGTCTATGGCTTGCCTGAAGCCTTCATCAATAATATAATGACAA
EX891889       --> AAAACTCGTCTATGGCTTGCCTGAAACCTTCATCAATAATATAATGGCAA
EY911810       --> AAAACTCGTCTATGGCTTGCCTGAAGCCTTCATCAATAATGTAATGGCAA
EY911215       --> AAAACTCGTCTATGGCTTGCCTGAAGCCTTCATCAATAATGTAATGGCAA

               300    -    350
UN16052        --> CTATATGTTTTAACTGGAAGGTAGCCCCGCTGAATCTTATGCTCACCCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY915354       <-- ..................................................
FD982294       <-- ..................................................
FY431341       <-- ..................................................
EX887839       <-- ..................................................
EY914237       <-- ..................................................
FD963742       <-- ..................................................
FD948656       <-- ..................................................
EX897457       <-- ..................................................
EW730213       --> CTATATGTTTTAACTGGAAGGTAGCCCCGCTGAATCTTATGCTCACCCTG
EX901211       --> CTATATGTTTTAACTGGAAGGTAGCCCCGCTGAATCTCATGCTCACCCTG
EX891889       --> CTATATGTTTTAACTGGAAGGTAGCCCCGCTGAATCTTATGCTCACCCTG
EY911810       --> CTATATGTTTTAACTGGAAGGTAGCCCCGCTGAATCTTATGCTCACCCTG
EY911215       --> CTATATGTTTTAACTGGAAGGTAGCCCCGCTGAATCTTATGCTCACCCTG

               350    -    400
UN16052        --> AGCTCCTGCTTCTACCGTTTTCAGATTAAGCTCTATTGCTGCTTCGATAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY915354       <-- ..................................................
FD982294       <-- ..................................................
FY431341       <-- ..................................................
EX887839       <-- ..................................................
EY914237       <-- ..................................................
FD963742       <-- ..................................................
FD948656       <-- ..................................................
EX897457       <-- ..................................................
EW730213       --> AGCTCCTGCTTCTACCGTTTTCAGATTAAGCTCTATTGCTGCTTCGATAG
EX901211       --> AGCTCCTGCTTCTACCGTTTTCAGATTAAGCTCTATTGCTGCTTCGATAG
EX891889       --> AGCTCCTGCTTCTACCGTTTTCAGATTAAGCTCTATTGCTGCTTCGATTG
EY911810       --> AGCTCCTGCTTCTACCGTTTTCAGATTAAGCTCTATTGCTGCTTCGATAG
EY911215       --> AGCTCCTGCTTCTACCGTTTTTAGATTAAGCTCTATTGCTGCTTCGATTG

               400    -    450
UN16052        --> CCTGGTAATAGCACGCCTCAAAGTGGAGACTAGGATAATAGGAGTCAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY915354       <-- ..................................................
FD982294       <-- ..................................................
FY431341       <-- ..................................................
EX887839       <-- ..................................................
EY914237       <-- ..................................................
FD963742       <-- ..................................................
FD948656       <-- ..................................................
EX897457       <-- ..................................................
EW730213       --> CCTGGTAATAGCACGCCTCAAAGTGGAGACTAGGATAATAAGAGTCAGGA
EX901211       --> CCTGGTAATAGCACGCCTCAAAGTGGAGACTAGGATAATAAGAGTCAGGA
EX891889       --> CCTGGTAATAGCACGCTTCAAAGTGGAGACTAGGATAATAGGAGTCAGGG
EY911810       --> CCTGGTAATAGCACGCCTCAAAGTGGAGACTAGGATAATAGGAGTCAGGG
EY911215       --> CCTGGTAATAGCACGCCTCAAAGTGGAGACTAGGATAATAGGAGTCAGGA

               450    -    500
UN16052        --> CGACATCCCCATAGTCGCCCAAAAAGAGTATCTCCACCAATTAGATTCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY915354       <-- ..................CCAAAAAGAGTATCTCCACCAATTAGATTCAA
FD982294       <-- ..................................................
FY431341       <-- ..................................................
EX887839       <-- ..................................................
EY914237       <-- ..................................................
FD963742       <-- ..................................................
FD948656       <-- ..................................................
EX897457       <-- ..................................................
EW730213       --> CGACATCCCCATAGTCGCCCAAAAAGAGTATCTCCACCAATTAAATTCAA
EX901211       --> CGACATCCCCATAGTCGCCCAAAAAGAGTATCTCCACCAATTAGATTCAA
EX891889       --> CGACATCCCCATAGTCGCCCAAAAAGAGTATCTCCACCAATTAGATTCAA
EY911810       --> CGACATCCCCATAGTCGCCCAAATAGAGTATCTCCACCGATTAGATTCAA
EY911215       --> CGACATCCCCATAGTCGCCCAAAAAGAGTATCTCCACCAATTAGATTCAA

               500    -    550
UN16052        --> AGCTCCTGCAACAGGTTCTTCGTTTTCTTCAGCAAGAACAAGCAATACTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY915354       <-- AGCTCCTGCAACAGGTTCTTCGTTTTCTTCAGCAAGAACAAGCAATACTC
FD982294       <-- ..................................................
FY431341       <-- ..................................................
EX887839       <-- ..................................................
EY914237       <-- ..................................................
FD963742       <-- ..................................................
FD948656       <-- ..................................................
EX897457       <-- ..................................................
EW730213       --> AGCTCCTGCAACAGGTTCTTCGTTTTCTTCAGCAAGAACAAGCAATACTC
EX901211       --> AGCTCCTGCAACAGGTTCTTCGTTTTCTTCAGCAAGAACAAGCAATACTC
EX891889       --> AGCTCCTGCAACAGGTTCTTCGTTTTCTTCCGCAAGAACAAGCAATACTC
EY911810       --> AGCTCCTGCAACAGGTTCTTCGTTTTCTTCAGCAAGAACAAGCAATACTC
EY911215       --> AGCTCCTGCAACAGGTTCTTCGTTTTCTTCAGCAAGAACAAGCAATACTC

               550    -    600
UN16052        --> CATCTCCCAATTTTGATGCCATGTAGTGGAAAAACTCTCTTGTTAGATAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY915354       <-- CATCTCCCAACTTTGATGCCATGTAGTGGAAAAACTCTCTTGTTAGATAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD982294       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY431341       <-- ..................................................  Raphanus sativus cv GSK3-1
EX887839       <-- ..................................................  Raphanus sativus var. oleiformis
EY914237       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD963742       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD948656       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX897457       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW730213       --> CATCTCCCAATTTTGATGCCATGTAGTGGAAAAACTCTCTTGTTAGATAA  Raphanus sativus cv Early Scarlet Globe
EX901211       --> CATCTCCCAATTTTGATGCCATGTAGTGGAAAAACTCTCTTGTTAGATAA  Raphanus sativus cv Early Scarlet Globe
EX891889       --> CATCTCCCAATTTTGATGCCATGTAGTGGAAAAACTCTCTTGTTAGATAA  Raphanus sativus var. oleiformis
EY911810       --> CATCTCCCAACTTTGATGCCATGTAGTGGAAAAACTCTCTTGTTAGATAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY911215       --> CATCTCCCAACTTTGATGCCATGTAGTGGAAAAACTCTCTTGTTAGATAA  Raphanus raphanistrum subsp. raphanistrum (NY)

               600    -    650
UN16052        --> GGTGTTCCCCATTTGTTATCAGTCGTGTTCCTGTAGAAATCATAGAATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY915354       <-- GGTGTTCCCCATTTGTTATCAGTCGTGTTCCTGTAGAAATCATAGAATGA
FD982294       <-- ..................................................
FY431341       <-- ..................................................
EX887839       <-- ..................................................
EY914237       <-- ..................................................
FD963742       <-- ..................................................
FD948656       <-- ..................................................
EX897457       <-- ..................................................
EW730213       --> GGTGTTCCCCATTTGTTATCAGTCGTGTTCCTGTAGAAATCATAGAATGA
EX901211       --> GGTGTTCCCCATTTGTTATCAGTCGTGTTCCTGTAGAAATCATAGAATGA
EX891889       --> GGTGTTCCCCATTTGTTATCAGTCGTGTTCCTGTAGAAATCATAGAATGA
EY911810       --> GGTGTTCCCCATTTGTTATCAGTCGTGTTCCTGTAGAAATCATAGAATGA
EY911215       --> GGTGTTCCCCATTTGTTATCAGTCGTGTTCCTGTAGAAATCATAGAATGA

               650    -    700
UN16052        --> ATCCCAGTGCCTAGCCTTTATTTCGTCTCCTCGCAACCGTCTCATTTTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY915354       <-- ATCCCAGTGCCTAGCCTTTATTTCGTCTCCACGCAACCGTCTCATTTTTA
FD982294       <-- ............................................TTTTTA
FY431341       <-- ..................................................
EX887839       <-- ..................................................
EY914237       <-- ..................................................
FD963742       <-- ..................................................
FD948656       <-- ..................................................
EX897457       <-- ..................................................
EW730213       --> ATCCCAGTG.........................................
EX901211       --> ATCCCAGTGCCTAGCCTTTATTTCGTCTCCTCGCAACCGTCTCATTTTTA
EX891889       --> ATCCCAGTGCCTAGCCTTTATTTCATCTCCTCGCAACCGTCTCATTTTCA
EY911810       --> ATCCCAGTGCCTAGCCTTTATTTCGTCTCCTCGCAACCGTCTCATTTTTA
EY911215       --> ATCCCAGTGCCTAGCCTTTA..............................

               700    -    750
UN16052        --> AGTTTTGGGTACCAATCTTTTTGCGTTCCTGCCGG-ATGTTTTTCCTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY915354       <-- AGTTTTGGGTACCAATCTTTTTGCGTTCCTGCCGG-ATGTTTTTCCTTTT
FD982294       <-- AGTTTTGGGTACCAATCTTTTTGCGTTCCTGCCGGGATGTTTTTCCTTTT
FY431341       <-- ..................................................
EX887839       <-- ..................................................
EY914237       <-- ..................................................
FD963742       <-- ..................................................
FD948656       <-- ..................................................
EX897457       <-- ..................................................
EW730213       --> ..................................................
EX901211       --> AGTTTT............................................
EX891889       --> AGTTTTGGGTACCAATCTTTTTGCGTTCTTGCCGG-ATGTTTTTCCTTTT
EY911810       --> AGTTTTGGGTACCAATCTTTTTGCGTTCCTGCCGG-ATGTTTTTCCTTTT
EY911215       --> ..................................................

               750    -    800
UN16052        --> GCTTTGCTTCATATCCATCAAGAACTCATCGAAATTTTTATAGTCACGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY915354       <-- GCTTTGCATCATATCCATCAAGAACTCATCGAAATTTTTATAGTCACGAT
FD982294       <-- GCTTTGCTTCATATCCATCAAGAACTCATCGAAATTTTTATAGCCACGAT
FY431341       <-- ..........................................GTCACGAT
EX887839       <-- ..................................................
EY914237       <-- ..................................................
FD963742       <-- ..................................................
FD948656       <-- ..................................................
EX897457       <-- ..................................................
EW730213       --> ..................................................
EX901211       --> ..................................................
EX891889       --> GCTTTGCTTCATATCCATCAAGAATTCATCGAAATTTTTATAGTCACGAT
EY911810       --> GCTTTGCTTCATATCCATCAAGAACTCATCGAAA................
EY911215       --> ..................................................

               800    -    850
UN16052        --> TCTTCCAGTGGTACTGCATTCCAATCCTCTGAGAGAAGCCTTTCTCCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY915354       <-- TCTTCCAGTGGTACTACATTCCAATCCTCTGAGAAAAGCCTTTCTCCTTC
FD982294       <-- TCTTCCAGTGGTACTGCATTCCAATCCTCTGAGAGAAGCCTTTCTCCTTC
FY431341       <-- TCTTCCAGTGGTACTGCATTCCAATCCTCTGAGAGAAGCCTTTCTCCTTC
EX887839       <-- ..............................GAGAGAAGC-TTTCTC-TTC
EY914237       <-- ............................................tcgTTC
FD963742       <-- ..................................................
FD948656       <-- ..................................................
EX897457       <-- ..................................................
EW730213       --> ..................................................
EX901211       --> ..................................................
EX891889       --> T.................................................
EY911810       --> ..................................................
EY911215       --> ..................................................

               850    -    900
UN16052        --> AACTTGTTCCACTCAGCTCCAGACGGAAAGGTAATGTGCAAAGATGAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY915354       <-- AACTTGTTCCACTCAGCTCCAGACGGGAAGGTAATGTGCAAAGATGAAAC
FD982294       <-- AACTTGTTCCACTCAGCTCCAGACGGAAAGGTAATATGCAAAGATGAAAC
FY431341       <-- AACTTGTTCCACTCAGCTCCAGACGGAAAGGTAATGTGCAAAGATGAAAC
EX887839       <-- AACATGT-CCACTCAGCTCCAGACGGAAAGGTAATGTGCAATGATGAAAC
EY914237       <-- AACT-GTTCCACTCAGCTCCAGACGGGAAGGTAATGTGCAATGATGAAAC
FD963742       <-- AACTTGTTCCACTCAGCTCCAGACGGAAAGGTAATGTGCAATGATGAAAC
FD948656       <-- .......TCCACTCAGCTCCAGACGGAAAGGTAATGTGCAAAGATGAAAC
EX897457       <-- ................................AATGTGCAAAGATGAAAC
EW730213       --> ..................................................
EX901211       --> ..................................................
EX891889       --> ..................................................
EY911810       --> ..................................................
EY911215       --> ..................................................

               900    -    950
UN16052        --> TTGTAGCTTAGCAGCCAATTGGGTCATGGCAGAAACAATAGCATCAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY915354       <-- TTGTAGCTTAGTAGCCAATTGAGTCATGGCAGAAACAATAGCATCAAAAA
FD982294       <-- TTGCAGCTTAGCAGCCAATTGGGTCATGGCAGAAACAATAGCATCAAAAA
FY431341       <-- TTGTAGCTTAGCAGCCAACTGGGTCATGGCAGAAACAATAGCATCAAAAA
EX887839       <-- TTGTAGCTTAGCAGCCAACTGGGTCATGGCAGAAACAATAGCATCAAAAA
EY914237       <-- TTGTAGCTTAGCAGCCAACTGGGTCATGGCAGAAACAATAGCATCAAAAA
FD963742       <-- TTGCAGCTTAGCAGCCAACTGGGTCATGGCAGAAACAATAGCATCAAAAA
FD948656       <-- TTGTAGCTTAGCAGCCAATTGGGTCATGGCAGAAACAATAGCATCAAAAA
EX897457       <-- TTGTAGCTTAGCAACCAATTGGGTCATGGCAGAAACAATAGCATCAAAAA
EW730213       --> ..................................................
EX901211       --> ..................................................
EX891889       --> ..................................................
EY911810       --> ..................................................
EY911215       --> ..................................................

               950    -   1000
UN16052        --> CCTGGTCTTTGAAAGGAGTATCACGGATGAGAATCCTAGGTCCAGTAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY915354       <-- CCTGGTCTTTGAAAGGAGTATCACGGATGAGAATCCTAGGTCCAGTAACA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD982294       <-- CCTGGTCTTTGAAAGGAGTATCACGGATGAGAATCCTAGGTCCAGTAACA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY431341       <-- CCTGGGCTTTGAAAGGAGTATCACGGATGAGAATCCTAGGTCCAGTAACA  Raphanus sativus cv GSK3-1
EX887839       <-- CCTGGTCTTTGAAAGGAGTATCACGGATGAGAATCCTAGGTCCAGTAACA  Raphanus sativus var. oleiformis
EY914237       <-- CCTGGTCTTTGAAGGGAGTATCACGGATGAGAATCCTAGGTCCAGTAACA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD963742       <-- CCTGGTCTTTGAAAGGAGTATCACGGATGAGAATCCTAGGTCCAGTAACA  Raphanus raphanistrum subsp. maritimus
FD948656       <-- CCTGGGCTTTGAAAGGAGTATCACGGATGAGAATCCTAGGTCCAGTAACA  Raphanus sativus cv Early Scarlet Globe
EX897457       <-- CCTGGGCTTTGAAAGGAGTATCACGGATGAGAATCCTAGGTCCAGTAACA  Raphanus sativus cv Early Scarlet Globe
EW730213       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX901211       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX891889       --> ..................................................  Raphanus sativus var. oleiformis
EY911810       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY911215       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               1000   -   1050
UN16052        --> GGGGTGAAAGGAACACAAGACTGGAGCTTAGGATAATATCTTCCACCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY915354       <-- GGGGTGAAAGGAACGCAAGACTGGAGCTTAGGATAATATCTTCCACCAAA
FD982294       <-- GGGGTGAAA.........................................
FY431341       <-- GGGGTGAAAGGAACACAAGACTGAAGCTTCGGATAATATCTTCCACCAAA
EX887839       <-- GGGGTGAAAGGAACACAAGACTGGAGCTTGGGATAATATCTTCCACCAAA
EY914237       <-- GGGGTGAAAGGAACACAAGACTGGAGCTTAGGATAATATCTTCCGCCAAA
FD963742       <-- GGGGTGAAAGGAACACAAGACTGTAGCTTGGGATAATATCTTCCACCAAA
FD948656       <-- GGGGTGAAAGGAACACAAGACTGGAGCTTAGGATAATATCTTCCACCAAA
EX897457       <-- GGGGTGAAAGGAACACAAGACTGGAGCTTAGGATAATATCTTCCACCAAA
EW730213       --> ..................................................
EX901211       --> ..................................................
EX891889       --> ..................................................
EY911810       --> ..................................................
EY911215       --> ..................................................

               1050   -   1100
UN16052        --> ACTTCGGTATGCATCAGCCCAAGAGTGATCAAAAACAAATTCACCGTAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY915354       <-- GCTTCGGTATGCATCAGCCCAAGAGTGATCAAGAACAAATTCACCGTAGc
FD982294       <-- ..................................................
FY431341       <-- ACTTCGGTATGCATCAGCCCAAGAGTGATCAAAAACAAATTCACCGTAGG
EX887839       <-- ACTTCGGTATGCATCAGCCCAAGAGTGATCAAAAACAAATTCACCG-AGG
EY914237       <-- ACTTCGGTATGCATCAGCC-AAGAGTGATCAAAAACAAATTCACCGTAGG
FD963742       <-- GCTTCGGTATGCATCAGCCCAAGAGTGATCAAAAACAAATTCACCGTAGG
FD948656       <-- ACTTCGGTATGCATCAGCCCACGAGTGATCAAAAACAAATTCACCGTAGG
EX897457       <-- ACTTCGGTATGCATCAGCCCACGAGTGATCAAAAACAAATTCACCGTAGG
EW730213       --> ..................................................
EX901211       --> ..................................................
EX891889       --> ..................................................
EY911810       --> ..................................................
EY911215       --> ..................................................

               1100   -   1150
UN16052        --> AGTGGCTTTTGAGATAAAGTGGAGAAACACCCAAAACATGACCAGATTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY915354       <-- ..................................................
FD982294       <-- ..................................................
FY431341       <-- AGTGGCTTTTGAGATAAAGTGGAGAAACACCCAAAACATGACCAGACTCA
EX887839       <-- AGTGGCTTTTGAGATAAATTGGAGAAACACCCAAAACATGACCAGATTCA
EY914237       <-- AGTGACTTTTGAGATAAAGTGGAGAAACACCCAAAACATGACCAGACTCG
FD963742       <-- AGTGGCTTTTGAGATAAAGAGGAGAAACACCCAAAACATGACCAGATTCG
FD948656       <-- AGTGGCTTTTGAGATAAAGTGGAGAAACACCCAAAACATGACCAGATTCG
EX897457       <-- AGTGGCTTTTGAGATAAAGTGGAGAAACACCCAAAACATGACCAGATTCG
EW730213       --> ..................................................
EX901211       --> ..................................................
EX891889       --> ..................................................
EY911810       --> ..................................................
EY911215       --> ..................................................

               1150   -   1200
UN16052        --> TCTTTTGCAACAATGTGCAATGGCATCCAACCTGTTTCCCGAGTGGCACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY915354       <-- ..................................................
FD982294       <-- ..................................................
FY431341       <-- TCTTTTGCAACAATGTGCAATGGCATCCAACCTGTTTCCCGAGTGGCACA
EX887839       <-- TCTTTTGCAACAATGTGTAATGGCATCCAACCTGTTTCCCGAGTGGCACA
EY914237       <-- TCTTTTGCAACAATGTGCAATGGCATCCGACCTGTTTCCCGAGTGGCACA
FD963742       <-- TCTTTTGCAACAATGTGTAATGGCATCCAACCTGTTTCCCGAGTGGCACA
FD948656       <-- TCTTTTGCAACAATGTGCAATGGCATCCAACCTGTTTCCCGAGTGGCACA
EX897457       <-- TCTTTTGCAACAATGTGCAATGGCATCCAACCTGTTTCCCGAGTGGCACA
EW730213       --> ..................................................
EX901211       --> ..................................................
EX891889       --> ..................................................
EY911810       --> ..................................................
EY911215       --> ..................................................

               1200   -   1250
UN16052        --> GCCAGTGTCTTCTAAACTGGAGAGAAAACCGTGCATAAGAAAAGGATTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY915354       <-- ..................................................
FD982294       <-- ..................................................
FY431341       <-- GCCAGTGTCTTCTAAACTGGAGAGAAAACCGTGCATAAGAAAAGGATTAT
EX887839       <-- GCCAGTGTCTTCTAAACTGGAGAGAAAACCGTGCATAAGAAAAGGATTAT
EY914237       <-- GCCAGTGTCTTCTAAACTGGAGAGAAAACCGTGCATAAGAAAAGGATTAA
FD963742       <-- GCCAGTGTCTTCTAGACTGGAGAGAAAACCGTGCATAAGAAAAGGATTGT
FD948656       <-- GCCAGTGTCTTCTAAACTTGAGAGAAAACCGTGCATAAGAAAAGGATTAA
EX897457       <-- GCCAGTGTCTTCTAAACTTGAGAGAAAACCGTGCATAAGAAAAGGATTAA
EW730213       --> ..................................................
EX901211       --> ..................................................
EX891889       --> ..................................................
EY911810       --> ..................................................
EY911215       --> ..................................................

               1250   -   1300
UN16052        --> AGCTTTGAGGTTGTGAAGAATCCAAGGCACAAGCATCCCATTCGGATGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY915354       <-- ..................................................
FD982294       <-- ..................................................
FY431341       <-- AGCTTTGAGGTTGTGAAGAATCCAAGGCACAAGCATCCCATTCAGATGGT
EX887839       <-- AGCTTTGAGGTTGTGAAGAATCCAAGGCACAAGCATCCCAATCGGATGGT
EY914237       <-- AGCTTTGAGGTTGTGAAGAATCCAAGGCACAAGCATCCCATTCAGATGGT
FD963742       <-- AGCTTTGAGGTTGTGAAGAATCCAAGGCACAAGCATCCCATTCAGATGGT
FD948656       <-- AGCTTTGAGGTTGTGAAGAATCCAAGGCACAAGCATCCCAATCGGATGGT
EX897457       <-- AGCTTTGAGGTTGTGAAGAATCCAAGGCACAAGCATCCCAATCGGATGGT
EW730213       --> ..................................................
EX901211       --> ..................................................
EX891889       --> ..................................................
EY911810       --> ..................................................
EY911215       --> ..................................................

               1300   -   1350
UN16052        --> GTTATCTCTGAGATTGAAGAAACTACTGAAAGTGAAATGACTGTTGGCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY915354       <-- ..................................................
FD982294       <-- ..................................................
FY431341       <-- GTTATCTCTGAGATCGAAGAAACTACTGAAAGTGAAATGACTGTTGGCCC
EX887839       <-- GTTATCTCTGAGATTGAAGAAACTACTGAAAGTGAAATGACTGTTGGCCC
EY914237       <-- GTTATCTCTGAGATCGAAGAAACTACTGAAAGTGAAATGACTGTTGGCCC
FD963742       <-- GTTATCTCTGAGATCGAAGAAACTACTGAAAGTGAAATGACTGTTGGCCC
FD948656       <-- GTTATCTCTGAGATTGAAGAAACTACTGAGAGTGAAATGACTGTTGGCCC
EX897457       <-- GTTATCTCTGAGATTGAAGAAACTACTGAGAGTGAAATGACTGTTGGCCC
EW730213       --> ..................................................
EX901211       --> ..................................................
EX891889       --> ..................................................
EY911810       --> ..................................................
EY911215       --> ..................................................

               1350   -   1400
UN16052        --> TTCCTCTGTGGTGGTGCCTGGTCCAGTTAAAGGATAATTCGCGAGTGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY915354       <-- ..................................................
FD982294       <-- ..................................................
FY431341       <-- TTCCTCTGTGGTGGTGCCTGGTCCAGTTAAAGGATAATTCGCGAGTGAAA
EX887839       <-- TTCCTCTGTGGTGGTGCCTGGTCCAGTTAAAGGATAATTCGCGAGTGAAA
EY914237       <-- TTCCTCTGTGGTGGTGCCTGGTCCGGTTAAAGGATAATTCGCGAGTGAAA
FD963742       <-- TTCCTCTGTGGTGGTGCCTGGTCCGGTTAAAGGATAATTCGCGAGTGAAA
FD948656       <-- TTCCTCTGTGGTGGTGCCTGGTCCAGTTAAAGGATAATTCGCAAGTGAAA
EX897457       <-- TTCCTCTGTGGTGGTGCCTGGTCCAGTTAAAGGATAATTCGCAAGTGAAA
EW730213       --> ..................................................
EX901211       --> ..................................................
EX891889       --> ..................................................
EY911810       --> ..................................................
EY911215       --> ..................................................

               1400   -   1450
UN16052        --> TATCGAACTCTCGCACTTGCGGAGATTTGTCGGACCTCCAGAACATAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY915354       <-- ..................................................
FD982294       <-- ..................................................
FY431341       <-- TATCGAACTCTCGAACTTGCGGAGATTTGTCGGACCTCCAGAACATAGCA
EX887839       <-- TATCGAACTCTCGAACTTGCGGAGATTTGTCGGACCTCCAGAACATAGCA
EY914237       <-- TATCGAACTCTCGCACTTGCGGAGATTTGTCGGACCTCCAGAACATAGCA
FD963742       <-- TATCGAACTCTGGCACTTGCGGAGATTTGTCGGACCTCCAGAACATAGCA
FD948656       <-- TATCGAACTCTCGCACTTGCGGAGATTTGTCGGACCTCCAGAACATAGCA
EX897457       <-- TATCGAACTCTCGCACTTGCGGAGATTTGTCGGACCTCCAGAACATAGCA
EW730213       --> ..................................................
EX901211       --> ..................................................
EX891889       --> ..................................................
EY911810       --> ..................................................
EY911215       --> ..................................................

               1450   -   1500
UN16052        --> GTAACTGTGGATGCTCTTCTTGAGCTCCGGACATTTTCTCTCTTCCACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY915354       <-- ..................................................
FD982294       <-- ..................................................
FY431341       <-- GTAACTGTGGATGCTCTTCTTGAGCTCCGGACATTTTCTCTCTTCCACAA
EX887839       <-- GTAACTGTCGATGCTCCTCTTGAGCTCCGGACATTTTCTCTCTTCCACAA
EY914237       <-- GTAACTGTGGATGCTCTTCTTGAGCTCCGGACATTTTCTCTCTTCCACAA
FD963742       <-- GTAACTGTGGATGCTCTTCTTGAGCTCCGGACATTTTCTCTCTTCCACAA
FD948656       <-- GTAACTGTGGATGCTCCTCTTGAGCTCCGGACATTTTCTCTCTTCCACAA
EX897457       <-- GTAACTGTGGATGCTCCTCTTGAGCTCCGGACATTTT-TCTCTTCCACAA
EW730213       --> ..................................................
EX901211       --> ..................................................
EX891889       --> ..................................................
EY911810       --> ..................................................
EY911215       --> ..................................................

               1500   -   1550
UN16052        --> ATTCCCGCACTGAGGATGAAATCGAAGTGGATGAAGCGAGGGTTTGCAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY915354       <-- ..................................................
FD982294       <-- ..................................................
FY431341       <-- ATTCCCGAACTGAGGATGAAATCGAAGTGGATGAAGCGAGGGTTTGCAGT
EX887839       <-- ATTCCCGCACTGAGGATGAAATCGAAGTGGATGAAGTGAGGGTTTGCAGT
EY914237       <-- ATTCCCGCACTGAGGATGAAATCGAAGTGGATGAAGCGAGGGTTTGCAGT
FD963742       <-- ATTCCCGCACTGAGGATc................................
FD948656       <-- ATTCCCGAACTGAGGATGAAATCGAAGTGGATGAAGCGAGGGTTTGCAGT
EX897457       <-- ATTCCCGAACTGAGGATGAAATCGAAGTGGATGAAGCGAGGGTTTGCAGT
EW730213       --> ..................................................
EX901211       --> ..................................................
EX891889       --> ..................................................
EY911810       --> ..................................................
EY911215       --> ..................................................

               1550   -   1600
UN16052        --> AAGAAAGTGCAACAACGGCCATCGAAGAGCAGAGCAGAGCCAAGCGTCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY915354       <-- ..................................................
FD982294       <-- ..................................................
FY431341       <-- AAGAAAGTGCAACAACGGCCATCGAAGAGCAGAGCAGAGCCAAGCGTCTG
EX887839       <-- AAGAAAGTGCAACAACGGCCATCGAAGAGCAGAGCAGAGCCAA.......
EY914237       <-- AAGAAAGTGCAACAACGGCCATCGAgccaagcgtctgaatcc........
FD963742       <-- ..................................................
FD948656       <-- AAGAAAGTGCAACAACGGCCATCGAAGAGCAGAGCAGAGCCAAGCGTCTG
EX897457       <-- AAGAAAGTGCAACAACGGCCATCGAAGAGCAGAGCAGAGCCAGGCGTCTG
EW730213       --> ..................................................
EX901211       --> ..................................................
EX891889       --> ..................................................
EY911810       --> ..................................................
EY911215       --> ..................................................

               1600   -   1650
UN16052        --> AATGTGTGGTGTGGCTCCCTCCTCCCTCACTCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY915354       <-- ..................................
FD982294       <-- ..................................
FY431341       <-- AATGTGTGGTGTGGCTCCCTCCTCCCTCACTCAT
EX887839       <-- ..................................
EY914237       <-- ..................................
FD963742       <-- ..................................
FD948656       <-- AATGTcc...........................
EX897457       <-- AATcc.............................
EW730213       --> ..................................
EX901211       --> ..................................
EX891889       --> ..................................
EY911810       --> ..................................
EY911215       --> ..................................