1      -     51
UN16088        --> CGCATTGTAAAAAAGGCTGTTGCAAAATGTCATTTCTGGCATTCCATTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527168       <-- .............................aagataggaaaggccaaaacg
EY896904       <-- ...................................ggaaaggccaaaacg
FD532526       <-- ..................................aggaaaggccaaaacg
FD989763       <-- ...................................ggaaaggccaaaacg
EY940500       <-- ..................................................
EV526446       <-- ..................................................
EW724261       <-- ..................................................
FD949101       <-- ..................................................
FD543950       <-- ..................................................
EX897300       <-- ..................................................
FY443097       <-- ..................................................
EY923684       <-- ..................................................
FY445377       <-- ..................................................
EX895241       <-- ..................................................
FD948251       <-- ..................................................
EV529366       <-- ..................................................
FD965591       <-- ..................................................
FD944070       --> CGCATTGTAAAAAAGGCTGTTGCAAAATGCCATTTCTGGCATTCCATTTT
EY936253       --> .....................GCAAAATGTCATTTCTGGCATTCCATTTT
EY935044       --> ....................................cGGCATTCCATTTT
FD944790       --> .....................................GGCATTCCATTTT
EV533125       --> ...................................ggaaaggccaaaacg
EY893342       --> ...................................ggaaaggccaaaacg
FD539666       --> ..................................cggaaaggccaaaacg
FD958728       --> ..................................aggaaaggccaaaacg
FD961288       --> ..................................aggaaaggccaaaacg
FY442366       --> .................................................c
EW728933       --> ..................................................
FD985511       --> ..................................................
EV544951       --> ..................................................
EX899413       --> ..................................................
FY444701       --> ..................................................

               51     -    101
UN16088        --> TTATTCTTATCCGTCATCATAGCTGGACAGAAAATCCAGAGTTCAAAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527168       <-- ttttaCTTATCCGTCATCATAGCTGGACAGAAAATCCAGAATTCAAAAAG
EY896904       <-- ttttaCTTATCCGTCATCATAGCTGGACAGAAAATCCAGAGTTCAAAAAG
FD532526       <-- ttttaCTTATCCGTCATCATAGCTGGAAAGAAAATCCAGAGTTCAAAAAG
FD989763       <-- ttttaCTTATCCGTCATCATAGCTGGACAGAAAATCCAGAGTTCAAAAAG
EY940500       <-- ..................................................
EV526446       <-- ..................................................
EW724261       <-- ..................................................
FD949101       <-- ..................................................
FD543950       <-- ..................................................
EX897300       <-- ..................................................
FY443097       <-- ..................................................
EY923684       <-- ..................................................
FY445377       <-- ..................................................
EX895241       <-- ..................................................
FD948251       <-- ..................................................
EV529366       <-- ..................................................
FD965591       <-- ..................................................
FD944070       --> TTATTCTTATCCGTCATCATAGCTGGACAGAAAATCCAGAGTTCAAAAAG
EY936253       --> TTATTCTTATCCGTCATCATAGCTGGACAGAAAATCCAGAGTTCAAAAAG
EY935044       --> TTATTCTTATCCGTCATCATAGCTGGACAGAAAATCCAGAGTTCAAAAAG
FD944790       --> TTATTCTTATCCGTCATCATAGCTGGACAGAAAATCCAGAGTTCAAAAAG
EV533125       --> ttttaCTTATCCGTCATCATAGCTGGACAGAAAATCCAGAGTTCAAAAAG
EY893342       --> ttttaCTTATCCGTCATCATAGCTGGACAGAAAATCCAGAGTTCAAAAAG
FD539666       --> ttttaCTTATCCGTCATCATAGCTGGACAGAAAATCCAGAGTTCAAAAAG
FD958728       --> ttttaCTTATCCGTCATCATAGCTGGACAGAAAATCCAGAGTTCAAAAAG
FD961288       --> ttttaCTTATCCGTCATCATAGCTGGACAGAAAATCCAGAGTTCAAAAAG
FY442366       --> aaacgCTTATCCGTCATCATAGCTGGACAGAAAATCCAGAGTTCAAAAAG
EW728933       --> ...................................CCAGAGTTCAAAAAG
FD985511       --> ..................................................
EV544951       --> ..................................................
EX899413       --> ..................................................
FY444701       --> ..................................................

               101    -    151
UN16088        --> TTGTAACAAAAATAATAGCAAAACGGGCCTATCAAAAAGGCCCAACATAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527168       <-- TTGTAACAAAAATAATAGCAAAACGGGCCTATCAAAAAGGCCCAACATAG  Raphanus raphanistrum subsp. maritimus
EY896904       <-- TTGTAACAAAAATAATAGCAAAACGGGCCTATCAAAAAGGCCCAACATAG  Raphanus raphanistrum subsp. maritimus
FD532526       <-- TTGTAACAAAAATAATAGCAAAACGGGCCTATCAAAAAGGCCCAACATAG  Raphanus raphanistrum subsp. maritimus
FD989763       <-- TTGTAACAAAAATAATAGCAAAACGGGCCTATCAAAAAGGCCCAACATAA  Raphanus raphanistrum subsp. landra
EY940500       <-- ...............................TCAAAAAGGCCCAACATAG  Raphanus sativus cv Early Scarlet Globe
EV526446       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EW724261       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD949101       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD543950       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX897300       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FY443097       <-- ..................................................  Raphanus sativus cv GSK3-1
EY923684       <-- ..................................................  Raphanus raphanistrum subsp. landra
FY445377       <-- ..................................................  Raphanus sativus cv GSK3-1
EX895241       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD948251       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV529366       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD965591       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD944070       --> TTGTAACAAAA-TAATAGCAAAACGGGCCTATCAAAAAGGCCCAACATAG  Raphanus sativus cv Early Scarlet Globe
EY936253       --> TTGTAACAAAA-TAATAGCAAAACGGGCCTATCAAAAAGGCCCAACATAA  Raphanus sativus cv Early Scarlet Globe
EY935044       --> TTGTAACAAAA-TAATAGCAAAACGGGCCTATCAAAAAGGCCCAACATAG  Raphanus sativus cv Early Scarlet Globe
FD944790       --> TTGTAACAAAA-TAATAGCAAAACGGGCCTATCAAAAAGGCCCAACATAG  Raphanus sativus cv Early Scarlet Globe
EV533125       --> TTGTAACAAAAATAATAGCAAAACGGGCCTATCAAAAAGGCCCAACATAG  Raphanus raphanistrum subsp. maritimus
EY893342       --> TTGTAACAAAAATAATAGCAAAACGGGCCTATCAAAAAGGCCCAACATAG  Raphanus raphanistrum subsp. maritimus
FD539666       --> TTGTAACAAAAATAATAGCAAAACGGGCCTATCAAAAAGGCCCAACATAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD958728       --> TTGTAACAAAAATAATAGCAAAACGGGCCTATCAAAAAGGCCCAACATAA  Raphanus raphanistrum subsp. maritimus
FD961288       --> TTGTAACAAAAATAATAGCAAAACGGGCCTATCAAAAAGGCCCAACATAG  Raphanus raphanistrum subsp. maritimus
FY442366       --> TTGTAACAAAA-TAATAGCAAAACGGGCCTATCAAAAAGGCCCAACATAG  Raphanus sativus cv GSK3-1
EW728933       --> TTGTAACAAAA-TAATAGCAAAACGGGCCTATCAAAAAGGCCCAACATAG  Raphanus sativus cv Early Scarlet Globe
FD985511       --> ..................................................  Raphanus raphanistrum subsp. landra
EV544951       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX899413       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FY444701       --> ..................................................  Raphanus sativus cv GSK3-1

               151    -    201
UN16088        --> AAAAGTTCTTAAGAAATCGAAATAAGCAGTGAAATAGATAGAGAGACGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527168       <-- AAAAGTTCTTAAGAAATCGAAATAAGCAGTGAAATAGATAGAGAGACGTC  Raphanus raphanistrum subsp. maritimus
EY896904       <-- AAAAGTTCTTAAGAAATCGAAATAAGCAGTGAAATAGATAGAGAGACGTC  Raphanus raphanistrum subsp. maritimus
FD532526       <-- AAAAGTTCTTAAGAAATCGAAATAAGCAGTGAAATAGATAGAGAGACGTC  Raphanus raphanistrum subsp. maritimus
FD989763       <-- AAAAGTTCTTAAGAAATCGAAATAAGCAGTGAAATAGATAGAGAGACGTC  Raphanus raphanistrum subsp. landra
EY940500       <-- AAAAGTTCTTAAGAAATCGAAATAAGCAGGGAAAGAGATAGAGAGACGTC  Raphanus sativus cv Early Scarlet Globe
EV526446       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EW724261       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD949101       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD543950       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX897300       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FY443097       <-- ..................................................  Raphanus sativus cv GSK3-1
EY923684       <-- ..................................................  Raphanus raphanistrum subsp. landra
FY445377       <-- ..................................................  Raphanus sativus cv GSK3-1
EX895241       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD948251       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV529366       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD965591       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD944070       --> AAAAGTTCTTAAGAAATCGAAATAAGCAGTGAAAGAGATAGAGAGACGTC  Raphanus sativus cv Early Scarlet Globe
EY936253       --> AAAAGTTCTTAAGAAATCGAAATAAGCAGGGAAAGAGATAGAGAGACGTC  Raphanus sativus cv Early Scarlet Globe
EY935044       --> AAAAGTTCTTAAGAAATCGAAATAAGCAGTGAAAGAGATAGAGAGACGTC  Raphanus sativus cv Early Scarlet Globe
FD944790       --> AAAAGTTCTTAAGAAATCGAAATAAGCAGTGAAAGAGATAGAGAGACGTC  Raphanus sativus cv Early Scarlet Globe
EV533125       --> AAAAGTTCTTAAGAAATCGAAATAAGCAGTGAAATAGATAGAGAGACGTC  Raphanus raphanistrum subsp. maritimus
EY893342       --> AAAAGTTCTTAAGAAATCGAAATAAGCAGTGAAATAGATAGAGAGACGTC  Raphanus raphanistrum subsp. maritimus
FD539666       --> AAAAGTTCTTAAGAAATCGAAATAAGCAGTGAAAGAGATAGAGAGCCGTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD958728       --> AAAAGTTCTTAAAAAATCGAAATAAGCAGTGAAATAAATAGAGAGACGTC  Raphanus raphanistrum subsp. maritimus
FD961288       --> AAAAGTTCTTAAGAAATCGAAATAAGCAGTGAAATAGATAGAGAGACGTC  Raphanus raphanistrum subsp. maritimus
FY442366       --> AAAAGTTCTTAAGAAATCGAAATAAGCAGTGAAAGAGATAGAGAGACGTC  Raphanus sativus cv GSK3-1
EW728933       --> AAAAGTTCTTAAAAAATCGAAATAAGCAGTGAAAGAGATAGAGAGACGTC  Raphanus sativus cv Early Scarlet Globe
FD985511       --> ..................................................  Raphanus raphanistrum subsp. landra
EV544951       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX899413       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FY444701       --> ..................................................  Raphanus sativus cv GSK3-1

               201    -    251
UN16088        --> AGGAATCAGCAGATTAGTCGACCTCTTCGATCTTAGGGCCAGCACCGCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527168       <-- AGGAATCAGCAGATTAGTCGACCTCTTCGATCTTAGGGCCAGCACCGCCT  Raphanus raphanistrum subsp. maritimus
EY896904       <-- AGGAATCAGCAGATTAGTCGACCTCTTCGATCTTAGGGCCAGCACCGCCT  Raphanus raphanistrum subsp. maritimus
FD532526       <-- AGGAATCAGCAGATTAGTCGACCTCTTCGATCTTAGGGCCAGCACCGCCT  Raphanus raphanistrum subsp. maritimus
FD989763       <-- AGGAATCAGCAGATTAGTCGACCTCTTCGATCTTAGGGCCAGCACCGCCT  Raphanus raphanistrum subsp. landra
EY940500       <-- AGGAATCAACAGATTAGTCGACCTCTTCGATCTTAGGGCCAGCACCGCCT  Raphanus sativus cv Early Scarlet Globe
EV526446       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EW724261       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD949101       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD543950       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX897300       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FY443097       <-- ..................................................  Raphanus sativus cv GSK3-1
EY923684       <-- ..................................................  Raphanus raphanistrum subsp. landra
FY445377       <-- ..................................................  Raphanus sativus cv GSK3-1
EX895241       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD948251       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV529366       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD965591       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD944070       --> AGGAATCAACAGATTAGTCGACCTCTTCGATCTTAGGGCCAGCACCGCCT  Raphanus sativus cv Early Scarlet Globe
EY936253       --> AGGAATCAACAGATTAGTCGACCTCTTCGATCTTAGGGCCAGCACCGCCT  Raphanus sativus cv Early Scarlet Globe
EY935044       --> AGGAATCAACAGATTAGTCGACCTCTTCGATCTTAGGGCCAGCACCGCCT  Raphanus sativus cv Early Scarlet Globe
FD944790       --> AGGAATCAACAGATTAGTCGACCTCTTCGATCTTAGGGCCAGCACCGCCT  Raphanus sativus cv Early Scarlet Globe
EV533125       --> AGGAATCAGCAGATTAGTCGACCTCTTCGATCTTAGGGCCAGCACCGCCT  Raphanus raphanistrum subsp. maritimus
EY893342       --> AGGAATCAGCAGATTAGTCGACCTCTTCGATCTTAGGGCCAGCACCGCCT  Raphanus raphanistrum subsp. maritimus
FD539666       --> AGGAATCAACAGATTAGTCGACCTCTTCGATCTTAGGACCAGCACCGCCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD958728       --> AGGAATCAGCAAATTAGTCGACCTCTTCGATCTTAGGGCCAGCACCGCCT  Raphanus raphanistrum subsp. maritimus
FD961288       --> AGGAATCAGCAGATTAGTCGACCTCTTCGATCTTAGGGCCAGCACCGCCT  Raphanus raphanistrum subsp. maritimus
FY442366       --> AGGAATCAACAGATTAGTCGACCTCTTCGATCTTAGGGCCAGCACCGCCT  Raphanus sativus cv GSK3-1
EW728933       --> AGGAATCAACAGATCAGTCGACCTCTTCGATCTTAGGGCCAGCACCGCCT  Raphanus sativus cv Early Scarlet Globe
FD985511       --> ....................ACCTCTTCGATCTTAGGGCCAGCACCGCCT  Raphanus raphanistrum subsp. landra
EV544951       --> .................................TAGGGCCAGCACCGCCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX899413       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FY444701       --> ..................................................  Raphanus sativus cv GSK3-1

               251    -    301
UN16088        --> GAGGCAGGAGGAGCATCATCGTCCATCCCTGCAGCTTCACCGCCAGCTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527168       <-- GAGGCAGGAGGAGCATCATCGTCCATCCCTGCAACTTCACCGCCAGCTCC
EY896904       <-- GAGGCAGGAGGAGCATCATCGTCCATCCCTGCAGCTTCACCGCCAGCTCC
FD532526       <-- GAGGCAGGAGGAGCATCATCGTCCATCCCTGCAGCTTCACCGCCAGCTCC
FD989763       <-- GAGGCAGGAGGAGCATCATCGTCCATCCCTGCAGCTTCACCGCCAGCTCC
EY940500       <-- GAGGCAGGAGGAGTATCATCGTCCATCCCTGCAGCTTCACCGCCAGCTCC
EV526446       <-- ..GGCAGGAGGAGCATCATCGTCCATCCCTGCAGCTTCACCGCCAGCTCC
EW724261       <-- ..GGCAGGAGGAGCATCATCGTCCATCCCTGCAGCTTCACCGCCAGCTCC
FD949101       <-- ..GGCAGGAGGAGCATCATCGTCCATCCCTGCAGCTTCACCGCCAGCTCC
FD543950       <-- ..................................................
EX897300       <-- ..................................................
FY443097       <-- ..................................................
EY923684       <-- ..................................................
FY445377       <-- ..................................................
EX895241       <-- ..................................................
FD948251       <-- ..................................................
EV529366       <-- ..................................................
FD965591       <-- ..................................................
FD944070       --> GAGGCAGGAGGAGCATCATCGTCCATCCCTGCAGCTTCACCGCCAGCTCC
EY936253       --> GAGGCAGGAGGAGTATCATCGTCCATCCCTGCAGCTTCACCGCCAGCTCC
EY935044       --> GAGGCAGGAGGAGCATCATCGTCCATCCCTGCAGCTTCACCGCCAGCTCC
FD944790       --> GAGGCAGGAGGAGCATCATCGTCCATCCCTGCAGCTTCACCGCCAGCTCC
EV533125       --> GAGGCAGGAGGAGCATCATCGTCCATCCCTGCAGCTTCACCGCCAGCTCC
EY893342       --> GAGGCAGGAGGAGCATCATCGTCCATCCCTGCAGCTTCACCGCCAGCTCC
FD539666       --> GAGGCAGGAGGAGCATCATCGTCCATTCCTGCGGCTTCACCGCCAGCTCC
FD958728       --> GAGGCAGGAGGAGCATCATCGTCCATCCCTGCAGCTTCACCGCCAGCTCC
FD961288       --> GAGGCAGGAGGAGCATCATCGTCCATCCCTGCAGCTTCACCGCCAGCTCC
FY442366       --> GAGGCAGGAGGAGCATCATCGTCCATCCCTGCAGCTTCACCGCCAGCTCC
EW728933       --> GAGGCAGGAGGAGCATCATCGTCCATCCCTGCAGCTTCACCGCCAGCTCC
FD985511       --> GAGGCAGGAGGAGCATCATCGTCCATCCCTGCAGCTTCACCGCCAGCTCC
EV544951       --> GAGGCAGGAGGAGCATCATCGTCCATCCCTGCAGCTTCACCGCCAGTTCC
EX899413       --> ..................................................
FY444701       --> ..................................................

               301    -    351
UN16088        --> TTGGTACATCTTGGCAATGATTGGGTTGCAGATGCTCTCCAACTCCTTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527168       <-- TTGGTACATCTTGGCAATGATTGGGTTGCAGATGCTCTCCAACTCCTTCA  Raphanus raphanistrum subsp. maritimus
EY896904       <-- TTGGTACATCTTGGCAATGATTGGGTTc......................  Raphanus raphanistrum subsp. maritimus
FD532526       <-- TTGGTACATCTTGGCAATGATTGGGTTGCAGATGCTCTCCAACTCCTTCA  Raphanus raphanistrum subsp. maritimus
FD989763       <-- TTGGTACATCTAGGCAATGATTGGGTTGCAGATGCTCTCCAACTCCTTCA  Raphanus raphanistrum subsp. landra
EY940500       <-- TTGGTACATCTTGGCAATGATTGGGTTGCAGATACTCTCCAACTCCTTCA  Raphanus sativus cv Early Scarlet Globe
EV526446       <-- TTGGTACATCTTGGCAATGATTGGGTTGCAGATGCTCTCCAACTCCTTCA  Raphanus raphanistrum subsp. maritimus
EW724261       <-- TTGGTACATCTTGGCAATGATTGGGTTGCAGATACTCTCCAACTCCTTCA  Raphanus sativus cv Early Scarlet Globe
FD949101       <-- TTGGTACATCTTGGCAATGATTGGGTTGCAGATACTCTCCAACTCCTTCA  Raphanus sativus cv Early Scarlet Globe
FD543950       <-- ..GGTACATCTTGGCAATGATTGGGTTGCAGATGCTCTCCAACTCCTTCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX897300       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FY443097       <-- ..................................................  Raphanus sativus cv GSK3-1
EY923684       <-- ..................................................  Raphanus raphanistrum subsp. landra
FY445377       <-- ..................................................  Raphanus sativus cv GSK3-1
EX895241       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD948251       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV529366       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD965591       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD944070       --> TTGGTACATCTTGGCAATGATTGGGTTGCAAATACTCTCCAACTCCTTCA  Raphanus sativus cv Early Scarlet Globe
EY936253       --> TTGGTACATCTTGGCAATGATTGGGTTGCAGATACTCTCCAACTCCTTCA  Raphanus sativus cv Early Scarlet Globe
EY935044       --> TTGGTACATCTTGGCAATGATTGGGTTGTAGATACTCTCCAACTCCTTCA  Raphanus sativus cv Early Scarlet Globe
FD944790       --> TTGGTACATCTTGGCAATGATTGGGTTGCAGATACTCTCCAACTCCTTCA  Raphanus sativus cv Early Scarlet Globe
EV533125       --> TTGGTACATCTTGGCAATGATTGGGTTGCGGATGCTCTCCAACTCCTTCA  Raphanus raphanistrum subsp. maritimus
EY893342       --> TTGGTACATCTTGGCAATGATTGGGTTc......................  Raphanus raphanistrum subsp. maritimus
FD539666       --> TTGGTACATCTTGGCAATGATTGGGTTGCAGATGCTCTCCAACTCCTTCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD958728       --> TTGGTACATCTTGGCAATGATTGGGTTGCAAATGCTCTCCAACTCCTTCA  Raphanus raphanistrum subsp. maritimus
FD961288       --> TTGGTACATCTTGGCAATGATTGGGTTGCAGATGCTCTCCAACTCCTTCA  Raphanus raphanistrum subsp. maritimus
FY442366       --> TTGGTACATCTTGGCAATGATTGGGTTGCAGATACTCTCCAACTCCTTCA  Raphanus sativus cv GSK3-1
EW728933       --> TTGGTACATCTTGGCAATGATTGGGTTGCAAATACTCTCCAACTCCTTCA  Raphanus sativus cv Early Scarlet Globe
FD985511       --> TTGGTACATCTAGGCAATGATTGGGTTGCAGATGCTCTCCAACTCCTTCA  Raphanus raphanistrum subsp. landra
EV544951       --> TTGGTACATCTTGGCAATGATTGGGTTGCAGATGCTCTCCAACTCCTTCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX899413       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FY444701       --> ..................................................  Raphanus sativus cv GSK3-1

               351    -    401
UN16088        --> TCTTGTCTTCAAACTCATCAGCCTCACCCAACTGGTTATTCTCTAGCCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527168       <-- TCTTGTCTTCGAACTCATCAGCCTCACCCAACTGGTTATTCTCTAGCCAC  Raphanus raphanistrum subsp. maritimus
EY896904       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD532526       <-- TCTTGTCTTCGAACTCATCAc.............................  Raphanus raphanistrum subsp. maritimus
FD989763       <-- TCTTGTCTTCGAACTCATCAGCCTCACCCAACTGGTTATTCTCTAGCCAC  Raphanus raphanistrum subsp. landra
EY940500       <-- TCTTGTCTTCAAACTCATCAGCCTCACCCAACTGGTTATTCTCTAGCCAC  Raphanus sativus cv Early Scarlet Globe
EV526446       <-- TCTTGTCTTCGAACTCATCAGCCTCACCCAACTGGTTATTCTCTAGCCAC  Raphanus raphanistrum subsp. maritimus
EW724261       <-- TCTTGTCTTCAAACTCATCAGCCTCACCCAACTGGTTATTCTCTAGCCAC  Raphanus sativus cv Early Scarlet Globe
FD949101       <-- TCTTGTCTTCAAACTCATCAGCCTCACCCAACTGGTTATTCTCTAGCCAC  Raphanus sativus cv Early Scarlet Globe
FD543950       <-- TCTTGTCCTCAAACTCATCAGCCTCACCCAACTGGTTGTTCTCTAGCCAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX897300       <-- ..........................CCCAACTGGTTATTCTCTAGCCAC  Raphanus sativus cv Early Scarlet Globe
FY443097       <-- ..................................................  Raphanus sativus cv GSK3-1
EY923684       <-- ..................................................  Raphanus raphanistrum subsp. landra
FY445377       <-- ..................................................  Raphanus sativus cv GSK3-1
EX895241       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD948251       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV529366       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD965591       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD944070       --> TCTTGTCTTCAAACTCATCAGCCTCACCCAACTGGTTATTCTCTAGCCAC  Raphanus sativus cv Early Scarlet Globe
EY936253       --> TCTTGTCTTCAAACTCATCAGCCTCACCCAACTGGTTATTCTCTAGCCAC  Raphanus sativus cv Early Scarlet Globe
EY935044       --> TCTTGTCTTCAAACTCATCAGCCTCACCCAACTGGTTATTCTCTAGCCAC  Raphanus sativus cv Early Scarlet Globe
FD944790       --> TCTTGTCTTCAAACTCATCAGCCTCACCCAACTGGTTATTCTCTAGCCAC  Raphanus sativus cv Early Scarlet Globe
EV533125       --> TCTTGTCTTCGAACTCATCAGCCTCACCCAACTGGTTATTCTCTAGCCAC  Raphanus raphanistrum subsp. maritimus
EY893342       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD539666       --> TCTTGTCCTCAAACTCATCAGCCTCACCCAACTGGTTGTTCTCTAGCCAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD958728       --> TCTTGTCTTCGAACTCATCAGCCTCACCCAACTGGTTATTCTCTAGCCAC  Raphanus raphanistrum subsp. maritimus
FD961288       --> TCTTGTCTTCGAACTCATCAGCCTCACCCAACTGGTTATTCTCTAGCCAC  Raphanus raphanistrum subsp. maritimus
FY442366       --> TCTTGTCTTCAAACTCATCAGCCTCACCCAACTGGTTATTCTCTAGCCAC  Raphanus sativus cv GSK3-1
EW728933       --> TCTTGTCTTCAAACTCATCAGCCTCACCCAACTGGTTATTCTCTAGCCAC  Raphanus sativus cv Early Scarlet Globe
FD985511       --> TCTTGTCTTCGAACTCATCAGCCTCACCCAACTGGTTATTCTCTAGCCAC  Raphanus raphanistrum subsp. landra
EV544951       --> TCTTGTCTTCCAACTCATCAGCCTCACCCAACTGGTTATTCTCTAGCCAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX899413       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FY444701       --> ..................................................  Raphanus sativus cv GSK3-1

               401    -    451
UN16088        --> TGAATCGCCTGCTCAATCGAGTCCTCGATCTTCTTCTTGTCTGCAGCCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527168       <-- TGAATCGCCTGCTCAATCGAGTCCTCGATC....................
EY896904       <-- ..................................................
FD532526       <-- ..................................................
FD989763       <-- TGAATCGCCTGCTCAATCGAGTCCTCGATCTTCCTCTTGTCTGCAGCCGG
EY940500       <-- TGAATCGCCTGCTCAATCGAGTCCTCGATCTTCTTCTTGTCTGCAGCCGG
EV526446       <-- TGAATCGCCTGCTCAATCGAGTCCTCGATCTTCTTCTTGTCTGCAGCCGG
EW724261       <-- TGAATCGCCTGCTCAATCGAGTCCTCGATCTTCTTCTTGTCTGCAGCCGG
FD949101       <-- TGAATCGCCTGCTCAATCGAGTCCTCGATCTTCTTCTTGCCTGCAGCCGG
FD543950       <-- TGAATCGC-TGCTCAATCGAGTCCTCGATCTTCTTCTTGTCTGCAGCCGG
EX897300       <-- TGAATCGCCTGCTCAATCGAGTCCTCGATCTTCTTCTTGTCTGCAGCCGG
FY443097       <-- ...............................TCTTCTTGTCTGCAGCCGG
EY923684       <-- ..................................................
FY445377       <-- ..................................................
EX895241       <-- ..................................................
FD948251       <-- ..................................................
EV529366       <-- ..................................................
FD965591       <-- ..................................................
FD944070       --> TGAATCGCCTGCTCAATCGAGTCCTCGATCTTCTTCTTGTCTGCAGCCGG
EY936253       --> TGAATCGCCTGCTCAATCGAGTCCTCGATCTTCTTCTTGTCTGCAGCCGG
EY935044       --> TGAATCGCCTGCTCAATCGAGTCCTCGATCTTCTTCTTGTCTGCAGCCGG
FD944790       --> TGAATCGCCTGCTCAATCGAGTCCTCGATCTTCTTCTTGCCTGCAGCCGG
EV533125       --> TGAATCGCCTGCTCAATCGAGTCCTCGATCTTCTTCTTGTCTGCAGCCGG
EY893342       --> ..................................................
FD539666       --> TGAATCGCCTGCTCAATCGAGTCCTCGATCTTCTTCTTGTCTGCAGCCGG
FD958728       --> TGAATCGCCTGCTCAATCGAGTCCTCGATCTTCTTCTTGTCTGCAGCCGG
FD961288       --> TGAATCGCCTGCTCAATCGAGTCCTCGATCTTCTTCTTGTCTGCAGCCGG
FY442366       --> TGAATCGACTGCTCAATCGAGTCCTCGATCTTCTTCTTGTCTGCAGCCGG
EW728933       --> TGAATCGCCTGCTCAATCGAGTCCTCGATCTTCTTCTTGTCTGCAGCCGG
FD985511       --> TGAATCGCCTGCTCAATCGAGTCCTCGATCTTCCTCTTGTCTGCAGCCGG
EV544951       --> TGAATCGCCTGCTCAATCGAGTCCTCGATCTTCTTCTTGTCTGCAGCCGG
EX899413       --> ..................................................
FY444701       --> ..................................................

               451    -    501
UN16088        --> TAGCTTCTCACCAATCTTCTCGTCCTGGATGGTGTTCCTCATGTTGTAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527168       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY896904       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD532526       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD989763       <-- TAGCTTCTCACCAATCTTCTCGTCCTGGATGGTGTTCCTCATGTTGTAAG  Raphanus raphanistrum subsp. landra
EY940500       <-- TAGCTTCTCACCAATCTTCTCGTCCTGGATGGTGTTCCTCATATTGTAAG  Raphanus sativus cv Early Scarlet Globe
EV526446       <-- TAGCTTCTCACCAATCTTCTCGTCCTGGATGGTGTTCCTCATGTTGTAAG  Raphanus raphanistrum subsp. maritimus
EW724261       <-- TAGCTTCTCACCAATCTTCTCGTCCTGGATGGTGTTCCTCATATTGTAAG  Raphanus sativus cv Early Scarlet Globe
FD949101       <-- TAGCTTCTCACCAATCTTCTCGTCCTGGATGGTGTTCCTCATATTGTAAG  Raphanus sativus cv Early Scarlet Globe
FD543950       <-- TAGCTTCTCACCAATCTTCTCGTCCTGGATCGTGTTCCTCATGTTGTAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX897300       <-- TAGCTTCTCACCAATCTTCTCGTCCTGGATGGTGTTCCTCATATTGTAAG  Raphanus sativus cv Early Scarlet Globe
FY443097       <-- TAGCTTCTCACCAATCTTCTCGTCCTGGATGGTGTTCCTCATATTGTAAG  Raphanus sativus cv GSK3-1
EY923684       <-- ............................ATGGTGTTCCTCATGTTGTAAG  Raphanus raphanistrum subsp. landra
FY445377       <-- ..................................................  Raphanus sativus cv GSK3-1
EX895241       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD948251       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV529366       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD965591       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD944070       --> TAGCTTCTCACCAATCTTCTCGTCCTGGATGGTGTTCCTCATATTGTAAG  Raphanus sativus cv Early Scarlet Globe
EY936253       --> TAGCTTCTCACCAATCTTCTCGTCCTGGATGGTGTTCCTCATATTGTAAG  Raphanus sativus cv Early Scarlet Globe
EY935044       --> TAGCTTCTCACCAATCTTCTCGTCCTGGA.....................  Raphanus sativus cv Early Scarlet Globe
FD944790       --> TAGCTTCTCACCAATCTTCTCGTCCTGGATGGTGTTCCTCATATTGTAAG  Raphanus sativus cv Early Scarlet Globe
EV533125       --> TAGCTTCTCACCAATCTTCTCGTCCTGGATGGTGTTCCTCATGTTGTAAG  Raphanus raphanistrum subsp. maritimus
EY893342       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD539666       --> TAGCTTCTCACCAATCTTCTCGTCCTGGATCGTGTTCCTCATGTTGTAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD958728       --> TAGCTTCTCACCAATCTTCTCGTCCTGGATGGTGTTCCTCATGTTGTAAG  Raphanus raphanistrum subsp. maritimus
FD961288       --> TAGCTTCTCACCAATCTTCTCGTCCTGGATGGTGTTCCTCATGTTGTAAG  Raphanus raphanistrum subsp. maritimus
FY442366       --> TAGCTTCTCACCAATCTTCTCGTCCTGGATGGTGTTCCTCATATTGTAAG  Raphanus sativus cv GSK3-1
EW728933       --> TAGCTTCTCACCAATCTTCTCGTCCTGGATGGTGTTCCTCATATTGTAAG  Raphanus sativus cv Early Scarlet Globe
FD985511       --> TAGCTTCTCACCAATCTTCTCGTCCTGGATGGTGTTCCTCATGTTGTAAG  Raphanus raphanistrum subsp. landra
EV544951       --> TAGCTTCTCACCAATCTTCTCGTCCTGGATGGTGTTCCTCATGTTGTAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX899413       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FY444701       --> ..................................................  Raphanus sativus cv GSK3-1

               501    -    551
UN16088        --> CGTAGTTCTCGAGAGCGTTCTTGGCTTCCACCTTCTTCTT-GTGCTCCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527168       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY896904       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD532526       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD989763       <-- CGTAGTTCTCGAGAGCGTTCTTGGCTTCCACCTTCTTCTT-GTGCTCCTC  Raphanus raphanistrum subsp. landra
EY940500       <-- CGTAGTTCTCGAGAGCGTTCTTGGCTTCCACCTTCTTCTT-GTGCTCCTC  Raphanus sativus cv Early Scarlet Globe
EV526446       <-- CGTAGTTCTCGAGAGCGTTCTTGGCTTCCACCTTCTTCTT-GTGCTCCTC  Raphanus raphanistrum subsp. maritimus
EW724261       <-- CGTAGTTCCCGAGAGCGTTCTTGGCTTCCACCTTCTTCTT-GTGCTTCTC  Raphanus sativus cv Early Scarlet Globe
FD949101       <-- CGTAGTTCTCGAGAGCGTTCTTGGCTTCCACCTTCTTCTT-GTGCTCCTC  Raphanus sativus cv Early Scarlet Globe
FD543950       <-- CGTAGTTCTCGAGAGCGTTCTTGGCTTCCACCTTCTTCTT-GTGCTCCTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX897300       <-- CGTAGTTCTCGAGAGCGTTCTTGGCTTCCACCTTCTTCTT-GTGCTCCTC  Raphanus sativus cv Early Scarlet Globe
FY443097       <-- CGTAGTTCTCGAGAGCGTTCTTGGCTTCCACCTTCTTCTT-GTGCTCCTC  Raphanus sativus cv GSK3-1
EY923684       <-- CGTAGTTCTCGAGAGCGTTCTTGGCTTCCACTTTCTTCTT-GTGCTCCTC  Raphanus raphanistrum subsp. landra
FY445377       <-- .........CGAGAGCGTTCTTGGCTTCCACCTTCTTCTT-GTGCTCCTC  Raphanus sativus cv GSK3-1
EX895241       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD948251       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV529366       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD965591       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD944070       --> CGTAGTTCTCGAGAGCGTTCTTGGCTTCCACCTTCTTCTT-GTGCTCCTC  Raphanus sativus cv Early Scarlet Globe
EY936253       --> CGTAGTTCTCGAGAGCGTTCTTGGCTTCCACCTTCTTCTT-GTGCTCCTC  Raphanus sativus cv Early Scarlet Globe
EY935044       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD944790       --> CGTAGTTCTCGAGAGCGTTCTTGGCTTCCACCTTCTTCTT-GTGCTCCTC  Raphanus sativus cv Early Scarlet Globe
EV533125       --> CGTAGTTCTCGAGAGCGTTCTTGGCTTCCACCTTCTTCTT-GTGCTCCTC  Raphanus raphanistrum subsp. maritimus
EY893342       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD539666       --> CGTAGTTCTCGAGAGCGTTCTTGGCTTCCACCTTCTTCTT-GTGCTCCTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD958728       --> CGTAGTTCTCGAGAGCGTTCTTGGCTTCCACCTTCTTCTT-GTGCTCCTC  Raphanus raphanistrum subsp. maritimus
FD961288       --> CGCAGTTCTCGAGAGCGTTCTTGGCTTCCACCTTCTTCTT-GTGCTCCTC  Raphanus raphanistrum subsp. maritimus
FY442366       --> CGTAGTT...........................................  Raphanus sativus cv GSK3-1
EW728933       --> CGTAGTTCCCGAAAGCGTTCTTGGCTTCCACCTTCTTCTT-GTGCTTCTC  Raphanus sativus cv Early Scarlet Globe
FD985511       --> CGTAGTTCTCGAGAGCGTTCTTGGCTTCCACCTTCTTCTT-GTGCTCCTC  Raphanus raphanistrum subsp. landra
EV544951       --> CGTAGTTCTCGAGAGCGTTCTTGGCTTCCACCTTCTTCTT-GTGCTCCTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX899413       --> ..........GAGAGCGTTCTTGGCTTCCACCTTCTTCTTTGTGCTCCTC  Raphanus sativus cv Early Scarlet Globe
FY444701       --> ......................GGCTTC-ACCTTCTTCTT-GTGCTCCTC  Raphanus sativus cv GSK3-1

               551    -    601
UN16088        --> ATCCTCAGACTT-GTACTTCTCAGCCTCCTGGACCATCTTCTCAATATCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527168       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY896904       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD532526       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD989763       <-- GTCCTCAGACTT-GGACTTCTCAGCCTCCTGGACCATCTTCTCAATATCc  Raphanus raphanistrum subsp. landra
EY940500       <-- ATCCTCAGACTT-GTACTTCTCAGCCTCCTGGACCATCTTCACAATATCG  Raphanus sativus cv Early Scarlet Globe
EV526446       <-- GTCCTCAGACTT-GTACTTCTCAGCCTCCTGGACCATCTTCTCAATATCG  Raphanus raphanistrum subsp. maritimus
EW724261       <-- ATCCTCAGACTT-GTACTTCTCAGCCTCCTGGACCATCTTCTCAATATCG  Raphanus sativus cv Early Scarlet Globe
FD949101       <-- ATCCTCAGACTT-GTACTTCTCAGCCTCCTGGACCATCTTCTCAATATCG  Raphanus sativus cv Early Scarlet Globe
FD543950       <-- GTCCTCAGACTT-GTACTTCTCAGCCTCCTGGACCATCTTCTCAATATCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX897300       <-- ATCCTCAGACTT-GTACTTCTCAGCCTCCTGGACCATCTTCTCAATATCG  Raphanus sativus cv Early Scarlet Globe
FY443097       <-- ATCCTCAGACTT-GTACTTCTCAGCCTCCTGGACCATCTTCTCAATATCG  Raphanus sativus cv GSK3-1
EY923684       <-- GTCCTCAGACTT-GTACTTCTCAGCCTCCTGGACCATCTTCTCAATATCG  Raphanus raphanistrum subsp. landra
FY445377       <-- ATCCTCAGACTT-GTACTTCTCAGCCTCCTGGACCATCTTCTCAATATCG  Raphanus sativus cv GSK3-1
EX895241       <-- ...............................GACCATCTTCTCAATATCG  Raphanus sativus cv Early Scarlet Globe
FD948251       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV529366       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD965591       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD944070       --> ATCCTCAGACTT-GTACTTCTCAGCCTCCTGGACCATCTTCTCAATATCG  Raphanus sativus cv Early Scarlet Globe
EY936253       --> ATCCTCAGACTT-GTACTTCTCAGCCTCCTGGACCATCTTCACAATATCG  Raphanus sativus cv Early Scarlet Globe
EY935044       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD944790       --> ATCCTCAGACTT-GTACTTCTCAGCCTCCTGGACCATCTT..........  Raphanus sativus cv Early Scarlet Globe
EV533125       --> GTCCTCAGACTT-GTACTTCTCAGCCTCCTGGACCATCTTCTCAATATCG  Raphanus raphanistrum subsp. maritimus
EY893342       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD539666       --> GTCCTCAGACTT-GTACTTCTCAGCCTCCTGGACCATCTTCTCAATATCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD958728       --> GTCCTC............................................  Raphanus raphanistrum subsp. maritimus
FD961288       --> GTCCTCAGACTT-GTACTTCTCAGCCTCCTGGACCATCTTCTCAATATCG  Raphanus raphanistrum subsp. maritimus
FY442366       --> ..................................................  Raphanus sativus cv GSK3-1
EW728933       --> ATCCTCAAACTT-GTACTTCTCAGCCTCCTGGACCATCTTCTCAATATCG  Raphanus sativus cv Early Scarlet Globe
FD985511       --> GTCCTCAGACTT-GGACTTCTCAG..........................  Raphanus raphanistrum subsp. landra
EV544951       --> gtc...............................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX899413       --> ATCCTCAGACTTTGTACTTCTCAGCCTCCTGGACCATCTTCTCAATATCG  Raphanus sativus cv Early Scarlet Globe
FY444701       --> ATCCTCAGACTT-GTACTTCTCAGCCTCCTGGACCATCTTCTCAATATCG  Raphanus sativus cv GSK3-1

               601    -    651
UN16088        --> TCCTTGGACAAACGACCCTTGTCGTTGGTGATGGTGATCTTGTTCTTCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527168       <-- ..................................................
EY896904       <-- ..................................................
FD532526       <-- ..................................................
FD989763       <-- ..................................................
EY940500       <-- TCCTTGGACAAACGACCCTTGTCGTTGGTGATGGTGATCTTGTTCTTCTG
EV526446       <-- TCCTTGGACAAACGACCCTTGTCGTTGGTGATGGTGATCTTGTTCTTCTG
EW724261       <-- TCCTTGGACAAACGACCCTTGTCGTTGGTGATGGTGATCTTGTTCTTCTG
FD949101       <-- TCCTTGGACAAACGACCCTTGTCGTTGGTGATGGTGATCTTGTTCTTCTG
FD543950       <-- TCCTTGGACAAACGACCCTTGTCGTTGGTGATGGTGATCTTGTTCTTCTG
EX897300       <-- TCCTTGGACAAACGACCCTTGTCGTTGGTGATGGTGATCTTGTTCTTCTG
FY443097       <-- TCCTTGGACAAACGACCCTTGTCGTTGGTGATGGTGATCTTGTTCTTCTG
EY923684       <-- TCCTTGGACAAACGACCCTTGTCGTTGGTGATGGTGATCTTGTTCTTCTG
FY445377       <-- TCCTTGGACAAACGACCCTTGTCGTTGGTGATGGTGATCTTGTTCTTCTG
EX895241       <-- TC-TTGGACAAACGACCCTTGTCGTTGGTGATGGTGATCTTGT-CTTCTG
FD948251       <-- ..................................................
EV529366       <-- ..................................................
FD965591       <-- ..................................................
FD944070       --> TCCTTGGACAAACGACCCTTGTCGTTGGTGATGGTGATCTTGTTCTTCTG
EY936253       --> TCCTTGGACAAACGACCCTTGTCGTTGGTGATGGTGATCTTGTTCTTCTG
EY935044       --> ..................................................
FD944790       --> ..................................................
EV533125       --> TCCTTGGACAAACGACCCTTGTCGTTGGTGATGGTGATCTTGTTCTTCTG
EY893342       --> ..................................................
FD539666       --> TCCTTGGACAAACGACCCTTGTCGTTGGTGATGGTGATCTTGTTCTTCTG
FD958728       --> ..................................................
FD961288       --> TCCTTGGACAAACGACCCTTGTCGTTGGTGATGGTGATCTTGTTCTTCTG
FY442366       --> ..................................................
EW728933       --> TCCTTGGACAAACGACCCTTGTCGTTGGTGATGGTGATCTTGTTCTTCTG
FD985511       --> ..................................................
EV544951       --> ..................................................
EX899413       --> TCCTTGGACAAACGACCCTTGTCGTTGGTGATGGTGATCTTGTTCTTCTG
FY444701       --> TCCTTGGACAAACGACCCTTGTCGTTGGTGATGGTGATCTTGTTCTTCTG

               651    -    701
UN16088        --> TCCGGTGGTCTTGTCCTCAGCAGAGACGTTGAGAATACCATTGGCGTCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527168       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY896904       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD532526       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD989763       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY940500       <-- TCCGGTGGTCTTGTCCTCAGCAGAGACGTTGAGAATACCATTGGCGACAA  Raphanus sativus cv Early Scarlet Globe
EV526446       <-- TCCGGTGGTCTTGTCCTCAGCAGACACGTTGAGGATACCATTGGCGTCAA  Raphanus raphanistrum subsp. maritimus
EW724261       <-- TCCGGTGGTCTTGTCCTCAGCAGAGACGTTGAGAATACCATTGGCGTCAA  Raphanus sativus cv Early Scarlet Globe
FD949101       <-- TCCGGTGGTCT-GTCCTCAGCAGAGACGTTGAGAATACCATTGGCGTCAA  Raphanus sativus cv Early Scarlet Globe
FD543950       <-- TCCAGTGGTCTTGTCCTCAGCAGACACGTTGAGGATACCATTGGCGTCGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX897300       <-- TCCGGTGGTCTTGTCCTCAGCAGAGACGTTGAGAATACCATTGGCGTCAA  Raphanus sativus cv Early Scarlet Globe
FY443097       <-- TCCGGTGGTCTTGTCCTCAGCAGAGACGTTGAGAATACCATTGGCGTCAA  Raphanus sativus cv GSK3-1
EY923684       <-- TCCGGTGGTCTTGTCCTCAGCAGACACGTTGAGGATACCATTGGCGTCAA  Raphanus raphanistrum subsp. landra
FY445377       <-- TCCGGTGGTCTTGTCCTCAGCAGAGACGTTGAGAATACCATTGGCGTCAA  Raphanus sativus cv GSK3-1
EX895241       <-- TCCGGTGGTCTTGTCCTCAGCAGAGACATTGAGAATACCATTGGCGTCAA  Raphanus sativus cv Early Scarlet Globe
FD948251       <-- ..................AGCAGAGACGTTGAGAATACCATTGGCGTCAA  Raphanus sativus cv Early Scarlet Globe
EV529366       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD965591       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD944070       --> TCCGGTGGTCTTGTCCT.................................  Raphanus sativus cv Early Scarlet Globe
EY936253       --> TCCGGTGGTCTTGTCCTCAGCAGA..........................  Raphanus sativus cv Early Scarlet Globe
EY935044       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD944790       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EV533125       --> TCCGGTGGTCTTGTCCTCAGCAGACACGTTGAGGATACCATTGGCGTCAA  Raphanus raphanistrum subsp. maritimus
EY893342       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD539666       --> TCCAGTGGTCTTGTCCTCAGCAGACACGTTGAGGATACCATTGGCGTCGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD958728       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD961288       --> TCCGGTGGTCTTGTCCTCAGCAGACACGTTGAGGATACCATTGGCGTCAA  Raphanus raphanistrum subsp. maritimus
FY442366       --> ..................................................  Raphanus sativus cv GSK3-1
EW728933       --> TCCGGTGGTCTTGTCCTCAGCAGAGAC.......................  Raphanus sativus cv Early Scarlet Globe
FD985511       --> ..................................................  Raphanus raphanistrum subsp. landra
EV544951       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX899413       --> TCCGGTGGTCTTGTCCTCAGCAGAGACATTGAGAATACCATTGGCGTCAA  Raphanus sativus cv Early Scarlet Globe
FY444701       --> TCCGGGGGTCTTGTCCTCAGCAGAAACGTTGAGAATACCATTGGCGTCAA  Raphanus sativus cv GSK3-1

               701    -    751
UN16088        --> TGTCAAAACAGACAGTGATCTGAGGGACACCACGTGGGGCTGGAGGGATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527168       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY896904       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD532526       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD989763       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY940500       <-- TGTCAAAACAGACAGTGATCTGAGGGACACCACGTGGGGCTGGAGGGATT  Raphanus sativus cv Early Scarlet Globe
EV526446       <-- TGTCAAAGCAGACAGTGATCTGAGGGACACCAAGTGGGGCTGGAGGGATT  Raphanus raphanistrum subsp. maritimus
EW724261       <-- TGTCAAAACAGACAGTGATCTGAGGGACACCACGTGGGGCTGGAGGGATT  Raphanus sativus cv Early Scarlet Globe
FD949101       <-- TGTCAAAACAGACAGTGATCTGAGGGAAACCACGTGGGGCTGGAGGGATT  Raphanus sativus cv Early Scarlet Globe
FD543950       <-- TGTCAAAACAGACAGTGATCTGAGGGACACCACGTGGGGCTGGAGGGATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX897300       <-- TGTCAAAACAGACAGTGATCTGAGGGACACCACGTGGGGCTGGAGGGATT  Raphanus sativus cv Early Scarlet Globe
FY443097       <-- TGTCAAAACAGACAGTGATCTGAGGGACACCACGTGGGGCTGGAGGGATT  Raphanus sativus cv GSK3-1
EY923684       <-- TGTCAAAGCAGACAGTGATCTGAGGGACACCACGTGGGGCTGGAGGGATT  Raphanus raphanistrum subsp. landra
FY445377       <-- TGTCAAAACAGACAGTGATCTGAGGGACACCACGTGGGGCTGGAGGGATT  Raphanus sativus cv GSK3-1
EX895241       <-- TGTCAAAACAGACAGTGATCTGAGGGACACCACGTGGGGCTGGAGGGATT  Raphanus sativus cv Early Scarlet Globe
FD948251       <-- TGTCAAAACAGACAGTGATCTGAGGGACACCACGTGGGGCTGGAGGGATT  Raphanus sativus cv Early Scarlet Globe
EV529366       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD965591       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD944070       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY936253       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY935044       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD944790       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EV533125       --> TGTCAAAGCAGACAGTGATCTGAGGGACACCACGTGGGGCTGGAGGGATT  Raphanus raphanistrum subsp. maritimus
EY893342       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD539666       --> TGTCAAAACAGACAGTGATCTGAGGGACACCACGTGGGGCT.........  Raphanus raphanistrum subsp. raphanistrum (MS)
FD958728       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD961288       --> TGTCAAAGCAGACAGTGATCTGAGGGACAC....................  Raphanus raphanistrum subsp. maritimus
FY442366       --> ..................................................  Raphanus sativus cv GSK3-1
EW728933       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD985511       --> ..................................................  Raphanus raphanistrum subsp. landra
EV544951       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX899413       --> TGTCAAAACAGACAGTGATCTGAGGGACA.....................  Raphanus sativus cv Early Scarlet Globe
FY444701       --> TGTCAAAACAGACAGTGATCTGAGGGACACCACGTGGGGCTGGAGGGATT  Raphanus sativus cv GSK3-1

               751    -    801
UN16088        --> CCAGAGAGCTCAAACTTCCCGAGTAGGTTGTTGTCCTTGGTTCTGGCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527168       <-- ..................................................
EY896904       <-- ..................................................
FD532526       <-- ..................................................
FD989763       <-- ..................................................
EY940500       <-- CCAGAGAGCTCAAACTTCCCc.............................
EV526446       <-- CCAGAGAGCTCAAACTTCCCGAGGAGGTTGTTGTCCTTGGTTCTGGCTCT
EW724261       <-- CCAGAGAGCTCAAACTTCCCGAGTAGGTCGTTGTCCTTGGTTCTGGCTCT
FD949101       <-- CCAGAGAGCTCAAACTTCCCGAGTAGGTTGTTGTTCTTGGTTCTGGCTCT
FD543950       <-- CCAGAGAGTTCAAACTTCCCGAGTAAGTTGTTGTCCTTGGTTCTGGCTCT
EX897300       <-- CCAGAGAGCTCAAACTTCCCGAGTAGGTTGTTGTCCTTGGTTCTGGCTCT
FY443097       <-- CCAGAGAGCTCAAACTTCCCGAGTAGGTTGTTGTCCTTGGTTCTGGCTCT
EY923684       <-- CCAGAGAGCTCAAACTTCCCGAGTAGGTTGTTGTCCTTGGTTCTGGCTCT
FY445377       <-- CCAGAGAGCTCAAACTTCCCGAGTAGGTTGTTGTCCTTGGTTCTGGCTCT
EX895241       <-- CCAGAGAGCTCAAACTTCCCGAGTAGGTTGTTGTCCTTGGTTCTGGCTCT
FD948251       <-- CCAGAGAGCTCAAACTTCCCGAGTAGGTTGTTGTCCTTGGTTCTGGCTCT
EV529366       <-- .......................................GTTCTGGCTCT
FD965591       <-- ..................................................
FD944070       --> ..................................................
EY936253       --> ..................................................
EY935044       --> ..................................................
FD944790       --> ..................................................
EV533125       --> CCAGAGAGTTCAAACTTCCCGAGGAGGTTGTTGTCCTTGGTTCTGGCTCT
EY893342       --> ..................................................
FD539666       --> ..................................................
FD958728       --> ..................................................
FD961288       --> ..................................................
FY442366       --> ..................................................
EW728933       --> ..................................................
FD985511       --> ..................................................
EV544951       --> ..................................................
EX899413       --> ..................................................
FY444701       --> CCAGAAAGCTCAAACTTCCCGAGTAGGTTGTTGTCCTTGGTTCTGGCTCT

               801    -    851
UN16088        --> CTCACCCTCGAACACCTGGATCAACACACCTGGCTGGTTGTCTGAATAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527168       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY896904       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD532526       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD989763       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY940500       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV526446       <-- CTCCCCCTCGAACACCTGGATCAACACACCTGGCTGGTTGTCTGAGTAGG  Raphanus raphanistrum subsp. maritimus
EW724261       <-- CTCACCCTCGAACACCTGGATCAACACACCTGGCTGGTTGc.........  Raphanus sativus cv Early Scarlet Globe
FD949101       <-- CTCACCCTCc........................................  Raphanus sativus cv Early Scarlet Globe
FD543950       <-- CTCACCCTAGAACACCTGGATCAACACACCTGGCTGGTTGTCTGAGTAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX897300       <-- CTCACCCTCGAACACCTGGATCAACACACCTGGCTGGTTGTCTGAATAGG  Raphanus sativus cv Early Scarlet Globe
FY443097       <-- CTCACCCTCGAACACCTGGATCAACACACCTGGCTGGTTGTCTGAATAGG  Raphanus sativus cv GSK3-1
EY923684       <-- CTCCCCCTCGAAAACCTGGATCAACACACCTGGCTGGTTGTCTGAATAGG  Raphanus raphanistrum subsp. landra
FY445377       <-- CTCACCCTCGAACACCTGGATCAACACACCTGGCTGGTTGTCTGAATAGG  Raphanus sativus cv GSK3-1
EX895241       <-- CTCGCCCTCGAACACCTGGATCAACACACCTGGCTGGTTGTCTGAATAGG  Raphanus sativus cv Early Scarlet Globe
FD948251       <-- CTCACCCTCGAACACCTGGATCAACACACCTGGCTGGTTGTCTGAATAGG  Raphanus sativus cv Early Scarlet Globe
EV529366       <-- CTCCCCCTCGAACACCTGGATCAACACACCTGGCTGGTTGTCTGAGTAGG  Raphanus raphanistrum subsp. maritimus
FD965591       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD944070       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY936253       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY935044       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD944790       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EV533125       --> CTCCCCCTCGAACACCTGGATCAACACACCTGGCTGGTTGTCTG......  Raphanus raphanistrum subsp. maritimus
EY893342       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD539666       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD958728       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD961288       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FY442366       --> ..................................................  Raphanus sativus cv GSK3-1
EW728933       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD985511       --> ..................................................  Raphanus raphanistrum subsp. landra
EV544951       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX899413       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FY444701       --> CTCACCCTCGAACACCTGGATCAACACACCTGGCTGGTTGTCTGAATAGG  Raphanus sativus cv GSK3-1

               851    -    901
UN16088        --> TTGAGAACACTTGCTCCTTTTTGGTAGGAATGGTGGTGTTCCTTGCGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527168       <-- ..................................................
EY896904       <-- ..................................................
FD532526       <-- ..................................................
FD989763       <-- ..................................................
EY940500       <-- ..................................................
EV526446       <-- TTGAGAACACCTGCTCCTTTTTGGTGGGAATGGTGGTGTTCCTTGCGATC
EW724261       <-- ..................................................
FD949101       <-- ..................................................
FD543950       <-- TTGAGAACACTTGCTCCTTTTTGGTCGGAATGGTGGTGTTCCTTGCGACC
EX897300       <-- TTGAGAACACTTGCTCCTTTTTGGTAGGAATGGTGGTGTTCCTTGCGATC
FY443097       <-- TTGAGAACACTTGCTCCTTTTTGGTAGGAATGGTGGTGTTCCTTGCGATC
EY923684       <-- TTGAGAACACTTGCTCCCTTTTGGTCGGAATGGTGGTGTTCCTTGCGATC
FY445377       <-- TTGAGAACACTTGCTCCTTTTTGGTAGGAATGGTGGTGTTCCTTGCGATC
EX895241       <-- TTGAGAACACTTGCTCCTTTTTGGTAGGAATGGTGGTGTTCCTTGCGATC
FD948251       <-- TTGAGAACACTTGCTCCTTTTTGGTAGGAATGGTGGTGTTCCTTGCGATC
EV529366       <-- TTGAGAACACCTGCTCCTTTTTGGTGGGAATGGTGGTGTTCCTTGCGATC
FD965591       <-- ........................................CCTTGCGATC
FD944070       --> ..................................................
EY936253       --> ..................................................
EY935044       --> ..................................................
FD944790       --> ..................................................
EV533125       --> ..................................................
EY893342       --> ..................................................
FD539666       --> ..................................................
FD958728       --> ..................................................
FD961288       --> ..................................................
FY442366       --> ..................................................
EW728933       --> ..................................................
FD985511       --> ..................................................
EV544951       --> ..................................................
EX899413       --> ..................................................
FY444701       --> TTGAGAACACTTGCTCCTTTTTGGTAGGAATGGTGGTGTTCCTTGCGATC

               901    -    951
UN16088        --> AAAGTGGTCATGACACCACCGGCGGTTTCAAGACCGAGTGAGAGAGGAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527168       <-- ..................................................
EY896904       <-- ..................................................
FD532526       <-- ..................................................
FD989763       <-- ..................................................
EY940500       <-- ..................................................
EV526446       <-- c.................................................
EW724261       <-- ..................................................
FD949101       <-- ..................................................
FD543950       <-- AAAGTGGTCATGACACCACCGGCGGTTTCAAGACCGAGTGAGAGAGGAGT
EX897300       <-- AAAGTGGTCATGACACCACCGGCGGTTTCAAGACCGAGTGAGAGAGGAGT
FY443097       <-- AAAGTGGTCATGACACCACCGGCGGTTTCAAGACCGAGTGAGAGAGGAGT
EY923684       <-- AAAGTGGTCATGACACCACCGGCGGTTTCAAGACCGAGTGAGAGAGGAGT
FY445377       <-- AAAGTGGTCATGACACCACCGGCGGTTTCAAGACCGAGTGAGAGAGGAGT
EX895241       <-- AAAGTGGTCATGACACCACCGGCGGTTTCAAGACCGAGTGAGAGAGGAGT
FD948251       <-- AAAGTGGTCATGACACCACCGGCGGTTTCAAGACCGAGTGAGAGAGGAGT
EV529366       <-- AAAGTGGTCATGACACCACCGGCGGTTTCAAGACCGAGTGAGAGAGGTGT
FD965591       <-- AAAGTGGTCATGACACCACCGGCGGTTTCAAGACCGAGTGAGAGAGGTGT
FD944070       --> ..................................................
EY936253       --> ..................................................
EY935044       --> ..................................................
FD944790       --> ..................................................
EV533125       --> ..................................................
EY893342       --> ..................................................
FD539666       --> ..................................................
FD958728       --> ..................................................
FD961288       --> ..................................................
FY442366       --> ..................................................
EW728933       --> ..................................................
FD985511       --> ..................................................
EV544951       --> ..................................................
EX899413       --> ..................................................
FY444701       --> AAAGTGGTCATGACACCACCGGCGGTTTCAAGACCGAGTGAGAGAGGAGT

               951    -   1001
UN16088        --> GACATCAAGCAAGAGAAGATCTTGGACCTTCTCGTTTCCTTCACCGCTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527168       <-- ..................................................
EY896904       <-- ..................................................
FD532526       <-- ..................................................
FD989763       <-- ..................................................
EY940500       <-- ..................................................
EV526446       <-- ..................................................
EW724261       <-- ..................................................
FD949101       <-- ..................................................
FD543950       <-- GACATCAAGCAAGAGAAGATCTTGGACCTTCTCGTTTCCTTCACCGCTGA
EX897300       <-- GACATCAAGCAAGAGAAGATCTTGGACCTTCTCc................
FY443097       <-- GACATCAAGCAAGAGAAGATCTTGGACCTTCTCGTTTCCTTCACCGCTGA
EY923684       <-- GACATCAAGCAAGAGAAGATCTTGGACCTTCTCGTTTCCTTCACCGCTGA
FY445377       <-- GACATCAAGCAAGAGAAGATCTTGGACCTTCTCGTTTCCTTCACCGCTGA
EX895241       <-- GACATCAAGCAAGAGAAGATCTTGGACCTTCTCGTTTCCTTCACCGCTGA
FD948251       <-- GACATCAAGCAAGAGAAGATCTTGGACCTTCTCGTTTCCTTCACCGCTGA
EV529366       <-- GACATCAAGCAAGAGAAGATCTTGGACCTTCTCGTTTCCTTCACCGCTGA
FD965591       <-- GACATCAAGCAAGAGAAGATCTTGGACCTTCTCGTTTCCTTCACCGCTGA
FD944070       --> ..................................................
EY936253       --> ..................................................
EY935044       --> ..................................................
FD944790       --> ..................................................
EV533125       --> ..................................................
EY893342       --> ..................................................
FD539666       --> ..................................................
FD958728       --> ..................................................
FD961288       --> ..................................................
FY442366       --> ..................................................
EW728933       --> ..................................................
FD985511       --> ..................................................
EV544951       --> ..................................................
EX899413       --> ..................................................
FY444701       --> GACATCAAGCAAGAGAAGATCTTGGACCTTCTCGTTTCCTTCACCGCTGA

               1001   -   1051
UN16088        --> GAATAGCTCCCTGGACTGCAGCACCGTAAGCAACAGCCTCGTCGGGGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527168       <-- ..................................................
EY896904       <-- ..................................................
FD532526       <-- ..................................................
FD989763       <-- ..................................................
EY940500       <-- ..................................................
EV526446       <-- ..................................................
EW724261       <-- ..................................................
FD949101       <-- ..................................................
FD543950       <-- GAATAGCTCCCTGAACTGCAGCACCATAAGCAACGGCCTCGTCAGGGTTG
EX897300       <-- ..................................................
FY443097       <-- GAATAGCTCCCTGGACTGCAGCACCGTAAGCAACAGCCTCGTCGGGGTTG
EY923684       <-- GAATAGCTCCCTGGACTGCAGCACCGTAAGCAACAGCCTCATCGGGGTTG
FY445377       <-- GAATAGCTCCCTGGACTGCAGCACCGTAAGCAACAGCCTCGTCGGGGTTG
EX895241       <-- GAATAGCTCCCTGGACTGCAGCACCGTAAGCAACAGCCTCGTCGGGGTTG
FD948251       <-- GAATAGCTCCCTGGACTGCAGCACCGTAAGCAACAGCCTCGTCGGGGTTG
EV529366       <-- GAATAGCACCATGGACAGCAGCACCGTAAGCAACAGCCTCGTCAGGGTTA
FD965591       <-- GAATAGCACCCTGGACAGCAGCACCGTAAGCAACAGCCTCGTCAGGGTTA
FD944070       --> ..................................................
EY936253       --> ..................................................
EY935044       --> ..................................................
FD944790       --> ..................................................
EV533125       --> ..................................................
EY893342       --> ..................................................
FD539666       --> ..................................................
FD958728       --> ..................................................
FD961288       --> ..................................................
FY442366       --> ..................................................
EW728933       --> ..................................................
FD985511       --> ..................................................
EV544951       --> ..................................................
EX899413       --> ..................................................
FY444701       --> AAATAGCTCCCTGGACTGCAGCACCGTAAGCAACAGCCTCGTCGGGGTTG

               1051   -   1101
UN16088        --> ATAGACTTGCAAAGCTCTTTGCCGTTGAAAAAGTCCTGAAGCAATTGCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527168       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY896904       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD532526       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD989763       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY940500       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV526446       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EW724261       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD949101       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD543950       <-- ATAGc.............................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX897300       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FY443097       <-- ATAGACTTGCAAAGCTCTTTGCCGTTGAAAAAGTCCTGAAGCAATTGCTG  Raphanus sativus cv GSK3-1
EY923684       <-- ATAGACTTGCAAAGCTCTTTGCCGTTGAAGAAGTCCTGAAGCAATTGCTG  Raphanus raphanistrum subsp. landra
FY445377       <-- ATAGACTTGCAAAGCTCTTTGCCGTTGAAAAAGTCCTGAAGCAATTGCTG  Raphanus sativus cv GSK3-1
EX895241       <-- ATAGACTTGCAAAGCTCTTTGCCGTTGAAAAAGTCCTGAAGCAATTGCTG  Raphanus sativus cv Early Scarlet Globe
FD948251       <-- ATAGACTTGCAAAGCTCTTTGCCGTTGAAAAAGTCCTGAAGCAATTGCTG  Raphanus sativus cv Early Scarlet Globe
EV529366       <-- ATAGACTTGCAAAGCTCTTTGCCGTTGAAGAAGTCCTGAAGCAATTGCTG  Raphanus raphanistrum subsp. maritimus
FD965591       <-- ATAGACTTGCAAAGCTCTTTGCCGTTGAAGAAGTACTGAAGCAATTGCTG  Raphanus raphanistrum subsp. maritimus
FD944070       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY936253       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY935044       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD944790       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EV533125       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY893342       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD539666       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD958728       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD961288       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FY442366       --> ..................................................  Raphanus sativus cv GSK3-1
EW728933       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD985511       --> ..................................................  Raphanus raphanistrum subsp. landra
EV544951       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX899413       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FY444701       --> ATAGACTTGCAAAGCTCTTTGCCGTTGAAAAAGTCCTGAAGCAATTGCTG  Raphanus sativus cv GSK3-1

               1101   -   1151
UN16088        --> AACCTTGGGAATACGGGTGGAGCCACCGACAAGGACAACATCGTGGACGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527168       <-- ..................................................
EY896904       <-- ..................................................
FD532526       <-- ..................................................
FD989763       <-- ..................................................
EY940500       <-- ..................................................
EV526446       <-- ..................................................
EW724261       <-- ..................................................
FD949101       <-- ..................................................
FD543950       <-- ..................................................
EX897300       <-- ..................................................
FY443097       <-- AACCTTGGGAATACGGGTGGAGCCACCGACAAGGACAACATCGTGGACGG
EY923684       <-- AACCTTGGGAATACGGGTGGAGCCc.........................
FY445377       <-- AACCTTGGGAATACGGGTGGAGCCACCGACAAGGACAACATCGTGGACGG
EX895241       <-- AACCTTGGGAATACGGGTGGAGCCACCGACAAGGACAACATCGTGGACGG
FD948251       <-- AACCTTGGGAATACGGGTGGAGCCACCGACAAGGACAACATCGTGGACGG
EV529366       <-- AACCTTGGGAATACGGGTGGAGCCACCGACAAGGACAACATCGTGGACGG
FD965591       <-- AACCTTGGGAATACGGGTGGAGCCACCGACAAGGACAACATCGTGGACGG
FD944070       --> ..................................................
EY936253       --> ..................................................
EY935044       --> ..................................................
FD944790       --> ..................................................
EV533125       --> ..................................................
EY893342       --> ..................................................
FD539666       --> ..................................................
FD958728       --> ..................................................
FD961288       --> ..................................................
FY442366       --> ..................................................
EW728933       --> ..................................................
FD985511       --> ..................................................
EV544951       --> ..................................................
EX899413       --> ..................................................
FY444701       --> AACCTTGGGAATACGGGTGGAGCCACCGACAAGGACAACATCGTGGACGG

               1151   -   1201
UN16088        --> TGCTCTTGTCCATCTTAGCATCACGTAGACACTTCTCAACTGGCTCCATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527168       <-- ..................................................
EY896904       <-- ..................................................
FD532526       <-- ..................................................
FD989763       <-- ..................................................
EY940500       <-- ..................................................
EV526446       <-- ..................................................
EW724261       <-- ..................................................
FD949101       <-- ..................................................
FD543950       <-- ..................................................
EX897300       <-- ..................................................
FY443097       <-- TGCTCTTGTCCATCTTAGCATCACGTAGACACTTCTCAACTGGCTCCATA
EY923684       <-- ..................................................
FY445377       <-- TGCTCTTGTCCATCTTAGCATCACGTAGACACTTCTCAACTGGCTCCATA
EX895241       <-- TGCTCTTGTCCATCTTAGCATCACGTAGACACTTCTCAACTGGCTCCATA
FD948251       <-- TGCTCTTGTCCATCTTAGCATCACGTAGACACTTCTCAACTGGCTCCATA
EV529366       <-- TGCTCTTGTCCATCTTAGCATCACGGAGACACTTCTCTACTGGCTCCATG
FD965591       <-- TGCTCTTGTCCATCTTAGCATCACGGAGACACTTCTCTACTGGCTCCATA
FD944070       --> ..................................................
EY936253       --> ..................................................
EY935044       --> ..................................................
FD944790       --> ..................................................
EV533125       --> ..................................................
EY893342       --> ..................................................
FD539666       --> ..................................................
FD958728       --> ..................................................
FD961288       --> ..................................................
FY442366       --> ..................................................
EW728933       --> ..................................................
FD985511       --> ..................................................
EV544951       --> ..................................................
EX899413       --> ..................................................
FY444701       --> TGCTCTTGTCCATCTTAGCATCACGTAGACACTTCTCAACTGGCTCCATA

               1201   -   1251
UN16088        --> CACTTCCTAAAGAGATCCATGTTGAGCTCCTCGAATCTGGCACGGGTAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527168       <-- ..................................................
EY896904       <-- ..................................................
FD532526       <-- ..................................................
FD989763       <-- ..................................................
EY940500       <-- ..................................................
EV526446       <-- ..................................................
EW724261       <-- ..................................................
FD949101       <-- ..................................................
FD543950       <-- ..................................................
EX897300       <-- ..................................................
FY443097       <-- CACTTCCTAAAGAGATCCATGTTGAGCTCCTCGAATCTGGCACGGGTAAG
EY923684       <-- ..................................................
FY445377       <-- CACTTCCTAAAGAGATCCATGTTGAGCTCCTCGAATCTGGCACGGGTAAG
EX895241       <-- CACTTCCTAAAGAGATCCATGTTGAGCTCCTCGAATCTGGCACGGGTAAG
FD948251       <-- CACTTCCTAAAGAGATCCATGTTGAGCTCCTCGAATCTGGCACGGGTAAG
EV529366       <-- CAATTCCTAAAGAGATCCATGTTGAGCTCCTCGAATCTAGCACGGGTGAG
FD965591       <-- CACTTCCTAAAGAGATCCATGTTGAGCTCCTCGAATCTAGCACGGGTGAG
FD944070       --> ..................................................
EY936253       --> ..................................................
EY935044       --> ..................................................
FD944790       --> ..................................................
EV533125       --> ..................................................
EY893342       --> ..................................................
FD539666       --> ..................................................
FD958728       --> ..................................................
FD961288       --> ..................................................
FY442366       --> ..................................................
EW728933       --> ..................................................
FD985511       --> ..................................................
EV544951       --> ..................................................
EX899413       --> ..................................................
FY444701       --> CACTTCCTAAAGAGATCCATGTTGAGCTCCTCGAATCTGGCACGGGT...

               1251   -   1301
UN16088        --> TGCAGAGTAGAAATCAATTCCCTCAAAGAGAGAGTCAATCTCGATGGTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527168       <-- ..................................................
EY896904       <-- ..................................................
FD532526       <-- ..................................................
FD989763       <-- ..................................................
EY940500       <-- ..................................................
EV526446       <-- ..................................................
EW724261       <-- ..................................................
FD949101       <-- ..................................................
FD543950       <-- ..................................................
EX897300       <-- ..................................................
FY443097       <-- TGCAGAGTAGAAATCAATc...............................
EY923684       <-- ..................................................
FY445377       <-- TGCAGAGTAGAAATCAATTCCCTCAAAGAGAGAGTCAATCTCGATGGTGG
EX895241       <-- TGCAGAGTAGAAATCAATTCCCTCAAAGAGAGAGTCAATCTCGATGGTc.
FD948251       <-- TGCAGAGTAGAAATCAATTCCCTCAAAGAGAGAGTCAATCTCGATGGTGc
EV529366       <-- TGCAGAGTAGAAATCAATTCCCTCAAAGAGAGAGTCAATCTCGATGGTGG
FD965591       <-- TGCAGAGTAGAAATCAATTCCCTCAAAGAGAGAGTCAGTCTCGATGGTGG
FD944070       --> ..................................................
EY936253       --> ..................................................
EY935044       --> ..................................................
FD944790       --> ..................................................
EV533125       --> ..................................................
EY893342       --> ..................................................
FD539666       --> ..................................................
FD958728       --> ..................................................
FD961288       --> ..................................................
FY442366       --> ..................................................
EW728933       --> ..................................................
FD985511       --> ..................................................
EV544951       --> ..................................................
EX899413       --> ..................................................
FY444701       --> ..................................................

               1301   -   1351
UN16088        --> TCTGAGCAGTGGAGGAAAGAGTCCTCTTTGCCCTCTCACAGGCTGTCCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527168       <-- ..................................................
EY896904       <-- ..................................................
FD532526       <-- ..................................................
FD989763       <-- ..................................................
EY940500       <-- ..................................................
EV526446       <-- ..................................................
EW724261       <-- ..................................................
FD949101       <-- ..................................................
FD543950       <-- ..................................................
EX897300       <-- ..................................................
FY443097       <-- ..................................................
EY923684       <-- ..................................................
FY445377       <-- TCTGAGCAGTGGAGGAAAGAGTCCTCTTTGCCCTCTCACAGGCAGTCCTC
EX895241       <-- ..................................................
FD948251       <-- ..................................................
EV529366       <-- TCTGAGCAGTGGAGGAAAGAGTCCTCTTTGCCCTCTCACAGGCTGTCCTC
FD965591       <-- TCTGAGCAGTGGAGGAAAGAGTCCTCTTTGCCCTCTCACAGGCTGTCCTC
FD944070       --> ..................................................
EY936253       --> ..................................................
EY935044       --> ..................................................
FD944790       --> ..................................................
EV533125       --> ..................................................
EY893342       --> ..................................................
FD539666       --> ..................................................
FD958728       --> ..................................................
FD961288       --> ..................................................
FY442366       --> ..................................................
EW728933       --> ..................................................
FD985511       --> ..................................................
EV544951       --> ..................................................
EX899413       --> ..................................................
FY444701       --> ..................................................

               1351   -   1401
UN16088        --> AACCTCCTAAGAGCTCTGGGGTTTCCAGTAATGTCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527168       <-- .....................................
EY896904       <-- .....................................
FD532526       <-- .....................................
FD989763       <-- .....................................
EY940500       <-- .....................................
EV526446       <-- .....................................
EW724261       <-- .....................................
FD949101       <-- .....................................
FD543950       <-- .....................................
EX897300       <-- .....................................
FY443097       <-- .....................................
EY923684       <-- .....................................
FY445377       <-- AACCTCCTAAGAGCTCTcg..................
EX895241       <-- .....................................
FD948251       <-- .....................................
EV529366       <-- AACCTCCTAAGAGCTCTGGGGTTTCCAGTAATGTCCT
FD965591       <-- AACCTCCTAAGAGCTCTGGGGTTTCCAGTAATGTCCT
FD944070       --> .....................................
EY936253       --> .....................................
EY935044       --> .....................................
FD944790       --> .....................................
EV533125       --> .....................................
EY893342       --> .....................................
FD539666       --> .....................................
FD958728       --> .....................................
FD961288       --> .....................................
FY442366       --> .....................................
EW728933       --> .....................................
FD985511       --> .....................................
EV544951       --> .....................................
EX899413       --> .....................................
FY444701       --> .....................................