Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN16128

               1      -     51
UN16128        --> GGATGAAGTAAAGCTAATAAAACATTTTGTTATCTCCACAG---ATTCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541524       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV547260       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY896029       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX751748       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV552327       --> GGATGAAGTAAAGCTAATAAAACATTTTGCTATCTCCACAG---ATTCCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV537248       --> ..............ggATACAACATTTTGTTATCTCCACAGCAGATTCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EW715651       --> ...............gATACAACATTTTGTTATCTCCACAGCAGATTCCA  Raphanus sativus var. oleiformis
EW725472       --> ..............ggATACAACATTTTGTTATCTCCACAG---ATTCCA  Raphanus sativus cv Early Scarlet Globe
EX747590       --> ..............ggATACAACATTTTGTTATCTCCACAG---ATTCCA  Raphanus raphanistrum subsp. maritimus
EY900501       --> ..............ggATACAACATTTTGTTATCTCCACAG---ATTCCA  Raphanus raphanistrum subsp. maritimus
FD561313       --> ..............ggATACAACATTTTGTTATCTCCACAGCAGATTCCA  Raphanus sativus var. oleiformis

               51     -    101
UN16128        --> ACTAAACAGGAATTAAACACACAAGATCAAGAAGAAGATGGTGATGCTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541524       <-- ..................................................
EV547260       <-- ..................................................
EY896029       <-- ..................................................
EX751748       <-- ..................................................
EV552327       --> ACAAAACAGGAATTAAACACACAAGATCAAGAAGAAGATGGTGATGCTGA
EV537248       --> ACTAAACAGGAATTAAACACACAAGATCAAGAAGAAGATGGTGATGCTAT
EW715651       --> ACTAAACAGGAATTAAACACACAAGATCAAGAAGAAGATGGTGATGCTAT
EW725472       --> ACTAAACAGGAATTAAACACACAAGATCAAGAAGAAGATGGTGATGCTAT
EX747590       --> ACTAAACAGGAATTAAACTCACAAGATCAAGAAGAAGATGGTGATGCTAT
EY900501       --> ACTAAACAGGAATTAAACTCACAAGATCAAGAAGAAGATGGTGATGCTAT
FD561313       --> ACTAAACAGGAATTAAACACACAAGATCAAGAAGAAGATGGTGATGCTAT

               101    -    151
UN16128        --> TTATTAAGCTCTGCCTCTTCGCCATGGCCCCCCTCTGCACTGTCGCTGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541524       <-- ..................................................
EV547260       <-- ..................................................
EY896029       <-- ..................................................
EX751748       <-- ..................................................
EV552327       --> TTGTTAAGCTCTGCCTCTTCGCCATGGCCCCCCTCTGTACTGTCGCTGCG
EV537248       --> TTATTAAGCTCTGCCTCTTCGCCATGGCCCCCCTCTGCACTGTCGCTGCG
EW715651       --> TTATTAAGCTCTGCCTCTTCGCCATGGCCCCCCTCTGCACTGTCGCTTCG
EW725472       --> TTATTAAGCTCTGCCTCTTCGCCATGGCCCCCCTCTGCACTGTCGCTGCG
EX747590       --> TTATTAAGCTCTGCCTCTTCGCCATGGCCCCCCTCTGCACTGTCGCTGCG
EY900501       --> TTATTAAGCTCTGTCTCTTCGCCATGGCCCCCCTCTGCACTGTCGCTGCG
FD561313       --> TTATTAAGCTCTGCCTCTTCGCCATGGCCCCCCTCTGCACTGTCGCTTCG

               151    -    201
UN16128        --> AATGCTCAGACACAAGGAATAGGGTTTGGATATGGAGGTAGAAATGGACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541524       <-- ..................................................
EV547260       <-- ..................................................
EY896029       <-- ..................................................
EX751748       <-- ..................................................
EV552327       --> AATGCTCAGACACAAGGAATAGGGTTTGGATATGGAGGTAGGAATGGACC
EV537248       --> AATGCTCAAACACAAGGAATAGGGTTTGGATATGGAGGTAGAAATGGACC
EW715651       --> AATGCTCAGACACAAGGAATAGGGTTTGGATATGGAGGTAGAAATGGACC
EW725472       --> AATGCTCAGACACAAGGAATAGGGTTTGGATATGGAGGTAGAAATGGACC
EX747590       --> AATGCTCAGACACAAGGAATAGGGTTTGGATATGGAGGTAGAAATGGACC
EY900501       --> AATGCTCAGACACAAGGAATAGGGTTTGGATATGGAGGTAGAAATGGACC
FD561313       --> AATGCTCAGACACAAGGAATAGGGTTTGGATATGGAGGTAGAAATGGACC

               201    -    251
UN16128        --> AAACCAATGGGGACACTTAAACCCTCACTACACTGAATGCTCGGTCGGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541524       <-- ..................................................
EV547260       <-- ..................................................
EY896029       <-- ..................................................
EX751748       <-- ..................................................
EV552327       --> AAACCAATGGGGACACTTAAACCCTCACTACACTGAATGCTCGGTCGGTA
EV537248       --> AAACCAGTGGGGACACTTAAACCCTCACTATACTGAATGCTCGGTCGGTA
EW715651       --> AAACCAATGGGGACACTTAAACCCTCAGTACACTGAATGCTCGGTCGGTA
EW725472       --> AAACCAGTGGGGACACTTAAACCCTCACTATACTGAATGCTCGGTCGGTA
EX747590       --> AAACCAATGGGGACACTTAAACCCTCACTACACTGAATGCTCGGTCGGTA
EY900501       --> AAACCAATGGGGACACTTAAACCCTCACTACACTGAATGCTCGGTCGGTA
FD561313       --> AAACCAATGGGGACACTTAAACCCTCAGTACACTGAATGCTCGGTCGGTA

               251    -    301
UN16128        --> AATTGCAATCTCCAATTGATATCCAAAGGGGACAAACCTTTTACAACAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541524       <-- .........................................TACAACAGC
EV547260       <-- ..................................................
EY896029       <-- ..................................................
EX751748       <-- ..................................................
EV552327       --> AATTGCAATCTCCAATTGATATCCAAAGGGGACAAACCTTTTACAACAGC
EV537248       --> AATTGCAATCTCCAATTGATATCCAAAGGGGACAAACCTTTTACAACAGC
EW715651       --> AATTGCAATCTCCAATTGATATCCAAAGGGGACAAACCTTTTACAACAGC
EW725472       --> AATTGCAATCTCCAATTGATATCCAAAGGGGACAAACCTTTTACAACAGC
EX747590       --> AATTGTAATCTCCAATTGATATCCAAAGGGGACAAACCTTTTACAACAGC
EY900501       --> AATTGCAATCTCCAATTGATATCCAAAGGGGACAAACCTTTTACAACAGC
FD561313       --> AATTGCAATCTCCAATTGATATCCAAAGGGGACAAACCTTTTACAACAGC

               301    -    351
UN16128        --> ACATTAGAACCGCTTCACCGCGATTACTACACCACAAATGCAACACTCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541524       <-- ACATTAGAACCGCTTCACCGCGATTACTACACCACAAAAGCAACACTCGT
EV547260       <-- .......AACCGCTTCACCGCGATTACTACACCACAAATGCAACACTCGT
EY896029       <-- ..............TCACCGCGATTACCACACCACAAATGCAACACTCGT
EX751748       <-- ..................................................
EV552327       --> ACATTAGAACCGCTTCACCGCGATTACTACACCACAAATGCAACACTCGT
EV537248       --> ACATTAGAACCGCTTCACCGCGATTACTACACCACAAAAGCAACACTCGT
EW715651       --> ACATTAGAACCGCTTCACCGCGATTACTACACCACAAATGCAACACTCGT
EW725472       --> ACATTAGAACCGCTTCACCGCGATTACTATACCACAAATGCAACACTCGT
EX747590       --> ACATTAGAACCGCTTCACCGCGATTACTACACCACAAATGCAACACTCGT
EY900501       --> ACATTAGAACCGCTTCACCGCGATTACCACACCACAAATGCAACACTCGT
FD561313       --> ACATTAGAACCGCTTCACCGCGATTACTACACCACAAATGCAACACTCGT

               351    -    401
UN16128        --> GAACCACGTCTGCAATGTCGCCATGTTCTTCGCGGAAGGAGCAGGAGATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541524       <-- GAACCACGTCTGCAATGTCGCCATGTTCTTCGCGGAAGGAGCAGGAGATG
EV547260       <-- GAACCACGTCTGCAATGTCGCCATGTTCTTCGCGGAAGGAGCAGGAGATG
EY896029       <-- GAACCACGTCTGCAATGTCGCCATGTTCTTCGCGGAAGGAGCAGGAGATG
EX751748       <-- ..................................................
EV552327       --> GAACCACGTCTGCAATGTCGCCATGTTCTTCGCGGAAGGAGCAGGAGATG
EV537248       --> GAACCACGTCTGCAATGTCGCCATGTTCTTCGCGGAAGGAGCAGGAGATG
EW715651       --> GAACCACGTCTGCAATGTCGCCATGTTCTTCGCGGAAGGAGCAGGAGATG
EW725472       --> GAACCACGTCTGCAATGTCGCCATGTTCTTCGCGGAAGGAGCAGGAGATG
EX747590       --> GAACCACGTCTGCAATGTCGCCATGTTCTTCGCGGAAGGAGCAGGAGATG
EY900501       --> GAACCACGTCTGCAATGTCGCCATGTTCTTCGCGGAAGGAGCAGGAGATG
FD561313       --> GAACCACGTCTGCAATGTCGCCATGTTCTTCGCGGAAGGAGCAGGAGATG

               401    -    451
UN16128        --> TGGTAATAAACGATAAGAACTATACCTTATTGCAAATGCATTGGCACACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541524       <-- TGGTAATAAACGATAAGAACTATACCTTATTGCAAATGCATTGGCACACT
EV547260       <-- TGGTAATAAACAATAAGAACTATACCTTATTGCAAATGCATTGGCACACT
EY896029       <-- TGGTAATAAACGATAAGAACTATACCTTATTGCAAATGCATTGGCACACT
EX751748       <-- ..................................................
EV552327       --> TGGTAATAAACAATAAGAACTATACCTTATTGCAAATGCATTGGCACACT
EV537248       --> TGGTAATAAACGATAAGAACTATACCTTATTGCAAATGCATTGGCACACT
EW715651       --> TGGTAATAAACGATAAGAACTATACCTTATTGCAAATGCATTGGCACACT
EW725472       --> TGGTAATAAACGATAAGAACTATACCTTATTGCAAATGCATTGGCACACT
EX747590       --> TGGTAATAAACGATAAGAACTATACCTTATTGCAAATGCATTGGCACACT
EY900501       --> TGGTAATAAACGATAAGAACTATACCTTATTGCAAATGCATTGGCACACT
FD561313       --> TGGTAATAAACGATAAGAACTATACCTTATTGCAAATGCATTGGCACACT

               451    -    501
UN16128        --> CCTTCGGAACATCATCTCCATGGTGTCCAATATGCAGCTGAACTACACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541524       <-- CCTTCCGAACATCATCTCCATGGTGTCCAATATGCAGCTGAACTACACAC
EV547260       <-- CCTTCGGAACATCATCTCCATGGTGTCCAATATGCAGCTGAACTACACAT
EY896029       <-- CCTTCGGAACATCATCTCCATGGTGTCCAATATGCAGCTGAACTACACAT
EX751748       <-- ......GAACATCATCTCCATGGTGTCCAATATGCAGCTGAACTACACAT
EV552327       --> CCTTCGGAACATCATCTCCATGGTGTCCAATATGCAGCTGAACTACACAT
EV537248       --> CCTTCCGAACATCATCTCCATGGTGTCCAATATGCAGCTGAACTACACAC
EW715651       --> CCTTCGGAACATCATCTCCATGGTGTCCAATATGCAGCTGAACTACACAT
EW725472       --> CCTTCCGAACATCATCTCCATGGTGTCCAATATGCAGCTGAACTACACAT
EX747590       --> CCTTCGGAACATCATCTCCATGGTGTCCAATATGCAGCTGAACTACACAT
EY900501       --> CCTTCGGAACATCATCTCCATGGTGTCCAATATGCAGCTGAACTACACAT
FD561313       --> CCTTCGGAACATCATCTCCATGGTGTCCAATATGCAGCTGAACTACACAT

               501    -    551
UN16128        --> GGTACACCAAGCAAAAGATGGAAGCTTTGCTGTGGTAGCAAGCCTCTTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541524       <-- GGCACACCAAGCAAAAGATGGAAGCTTTGCTGTGGTAGCAAGCCTCTTCA
EV547260       <-- GGTACACCAAGCAAAAGATGGAAGCTTTGCTGTGGTAGCAAGCCTCTTCA
EY896029       <-- GGTACACCAAGCAAAAGATGGAAGCTTTGCTGTGGTAGCAAGCCTCTTCA
EX751748       <-- GGTACACCAAGCAAAAGATGGAAGCCTTGCTGTGGTAGCAAGCCTCTTCA
EV552327       --> GGTACACCAAGCAAAAGATGGAAGCTTTGCTGTGGTAGCAAGCCTCTTCA
EV537248       --> GGCACACCAAGCAAAAGATGGAAGCTTTGCTGTGGTAGCAAGCCTCTTCA
EW715651       --> GGTACACCAAGCAAAAGATGGAAGCTTTGCTGTGGTAGCAAGCCTCTTCA
EW725472       --> GGTACACCAAGCAAAAGATGGAAGCTTTGCTGTGGTAGCAAGCCTCTTCA
EX747590       --> GGTACACCAAGCAAAAGATGGAAGCCTTGCTGTGGTAGCAAGCCTCTTCA
EY900501       --> GGTACACCAAGCAAAAGATGGAAGCTTTGCTGTGGTAGCAAGCCTCTTCA
FD561313       --> GGTACACCAAGCAAAAGATGGAAGCTTTGCTGTGGTAGCAAGCCTCTTCA

               551    -    601
UN16128        --> AAATCGGCAGTGAAGAGCCTTTCCTCTCTCAGATGAAGGATAAATTAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541524       <-- AAATCGGCAGTGAAGAGCCTTTCCTCTCTCAGATGAAGGATAAATTAATG
EV547260       <-- AAATCGGCAGTGAAGAGCCTTTCCTCTCTCAGATGAAGGATAAATTAATG
EY896029       <-- AAATCGGCAGTGAAGAGCCTTTCCTCTCTCAGATGAAGGATAAATTAATG
EX751748       <-- AAATCGGCAGTGAAGAGCCTTTCCTCTCTCAGATGAAGGATAAATTAATG
EV552327       --> AAATCGGCAGTGAAGAGCCTTTCCTCTCTCAGATGAAGGATAAATTAATG
EV537248       --> AAATCGGCAGTGAAGAGCCTTTCCTCTCTCAGATGAAGGATAAATTAATG
EW715651       --> AAATCGGCAGTGAAGAGCCTTTCCTCTCTCAGATGAAGGATAAATTAATG
EW725472       --> AAATCGGCAGTGAAGAGCCTTTCCTCTCTCAGATGAAGGATAAATTAATG
EX747590       --> AAATCGGCAGTGAAGAGCCTTTCCTCTCTCAGATGAAGGATAAATTAATG
EY900501       --> AAATCGGCAGTGAAGAGCCTTTCCTCTCTCAGATGAAGGATAAATTAATG
FD561313       --> AAATCGGCAGTGAAGAGCCTTTCCTCTCTCAGATGAAGGATAAATTAATG

               601    -    651
UN16128        --> AAGCTAAAGGATGAGAGGCTCAAAGGGAACCAAACAGCACAAGTGGAAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541524       <-- AAGCTAAAGGATGAGAGGCTCAAAGGGAACCAAACAGCACAAGTGGAAGT
EV547260       <-- AAGCTAAAGGATGAGAGGCTCAAAGGGAACCAAACAGCACAAGTGGAAGT
EY896029       <-- AAGCTAAAGGATGAGAGGCTCAAAGGGAACCAAACAGCACAAGTGGAAGT
EX751748       <-- AAGCTAAAGGATGAGAGGCTCAAAGGGAACCAAACAGCACAAGTGGAAGT
EV552327       --> AAGCTAAAGGATGAGAGGCTCAAAGGGAACCAAACAGCACAAGTGGAAGT
EV537248       --> AAGCTAAAGGATGAGAGGCTCAAAGGGAACCAAACAGCACAAGTGGAAGT
EW715651       --> AAGCTAAAGGATGAGAGGCTCAAAGGGAACCAAACAGCACAAGTGGAAGT
EW725472       --> AAGCTAAAGGATGAGAGGCTCAAAGGGAACCAAACAGCACAAGTGGAAGT
EX747590       --> AAGCTAAAGGATGAGAGGCTCAAAGGGAACCAAACAGCACAAGTGGAAGT
EY900501       --> AAGCTAAAGGATGAGAGGCTCAAAGGGAACCAAACAGCACAAGTGGAAGT
FD561313       --> AAGCTAAAGGATGAGAGGCTCAAAGGGAACCAAACAGCACAAGTGGAAGT

               651    -    701
UN16128        --> TGGAAAAATAAACACAAGACATATCGAACGTAAGACTCGAAAGTACTTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541524       <-- TGGAAAAATAAACACAAGACATATCGAACGTAAGACTCGAAAGTACTTCA
EV547260       <-- TGGAAAAATAAACACAAGACACATCGAACGTAAGACTCGAAAGTACTTCA
EY896029       <-- TGGAAAAATAAACACAAGACATATCGAACGTAATACTCGAAAGTACTTCA
EX751748       <-- TGGAAAAATAAACACAAGACATATCGAACGTAAGACTCGAAAGTACTTCA
EV552327       --> TGGAAAAATAAACACAAGACACATCGAACGTAAGACTCGAAAGTACTTCA
EV537248       --> TGGAAAAATAAACACAAGACATATCGAACGTAAGACTCGAAAGTACTTCA
EW715651       --> TGGAAAAATAAACACAAGACATATCGAACGTAAGACTCGAAAGTACTTCA
EW725472       --> TGGAAAA-TAAACACAAGACATATCGAACGTAAGACTCGAAAGTACTTCA
EX747590       --> TGGAAAAATAAACACAAGACATATCGAACGTAAGACTCGAAAGTACTTCA
EY900501       --> TGGAAAAATAAACACAAGACATATCGAACGTAATACTCGAAAGTACTTCA
FD561313       --> TGGAAAA-TAAACACAAGACATATCGAACGTA-GACTCGAAAGTACTTCA

               701    -    751
UN16128        --> GATACTATGGCTCACTCACCACTCCTCCTTGTTCCGAAAACGTATCTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541524       <-- GATACTATGGCTCACTCACCACTCCTCCTTGTTCCGAAAACGTATCTTGG
EV547260       <-- GATACTATGGCTCACTCACCACACCTCCTTGTTCCGAAAACGTATCTTGG
EY896029       <-- GATACTATGGCTCACTCACCACTCCTCCTTGTTCCGAAAACGTATCTTGG
EX751748       <-- GATACTATGGCTCACTCACCACTCCTCCTTGTTCCGAAAACGTATCTTGG
EV552327       --> GATACTATGGCTCACTCACCACACCTCCTTGTTCCGAAAACGTATCT...
EV537248       --> GATACTATGGCTCACTCACCACTCCTCCTTGTTCCGAAAACGTATCTTGG
EW715651       --> GATACTATGGCTCACTCACCACTCCTCCTTGTTCCGAAAACGTATCTTGG
EW725472       --> GATACTATGGCTCACTCAC-ACTCCTC-TTGTTCCGAAA-CGTATCTTGG
EX747590       --> GATACTATGGCTCACTCACCACTCCTCCTTGTTCCGAAAACGTATCTTGG
EY900501       --> GATACTATGGCTCACTCACCACTCCTCCTTGTTCCGAAAACGTATCTTG.
FD561313       --> GATACTATGGCTCACTCA................................

               751    -    801
UN16128        --> ACCATTCTTGGCAAGGTGAGGTCAATGTCAAAGGAACAAGTAGAACTACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541524       <-- ACCATTCTTGGCAAGGTGAGGTCAATGTCAAAGGAACAAGTAGAACTACT
EV547260       <-- ACCATTCTTGGCAAGGTGAGGTCAATGTCAAAGGAACAAGTAGAACTACT
EY896029       <-- ACCATTCTTGGCAAGGTGAGGTCAATGTCAAAGGAACAAGTAGAACTACT
EX751748       <-- ACCATTCTTGGCAAGGTGAGGTCAATGTCAAAGGAACAAGTAGAACTACT
EV552327       --> ..................................................
EV537248       --> ACCATTCTTG........................................
EW715651       --> ACCATTCTTGGCAAGGTGAGGTCAATGTCA....................
EW725472       --> AC-ATTCTTGGCA--GTAAG-TCA-T-TCAAAG--ACA-GTAGAACTACT
EX747590       --> AC-ATTCTTGG.......................................
EY900501       --> ..................................................
FD561313       --> ..................................................

               801    -    851
UN16128        --> ACGATCTCCATTGGACATTTCTTACAAGAAAAATGCAAGACCTTGTCAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541524       <-- ACGATCTCCATTGGACATTTCTTACAAGAAAAATGCAAGACCTTGTCAAC
EV547260       <-- ACGTTCTCCATT......................................
EY896029       <-- ACGATCTCCATTGGACATTTCTTACAAGAAAAATGCAAGACCTTGTCAAC
EX751748       <-- ACGATCTCCATTGGACATTTCTTACAAGAAAAATGCAAGACCTTGTCAAC
EV552327       --> ..................................................
EV537248       --> ..................................................
EW715651       --> ..................................................
EW725472       --> ACGATCTCa.........................................
EX747590       --> ..................................................
EY900501       --> ..................................................
FD561313       --> ..................................................

               851    -    901
UN16128        --> CCCTAAACGGCCGGCGAGTTGAGATGTTCCACGAGCGCGTCACCGAAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541524       <-- CCCTAAACGGCCGGCGAGTTGAGATGTTCCACGAGCGCGTCACCAAAAAG
EV547260       <-- ..................................................
EY896029       <-- CCCTAAACGGCCGGCGAGTTGAGATGTTCCACGAGCGCGTCACCGAAAAG
EX751748       <-- CCCTAAACGGCCGGCGAGTTGAGATGTTCCACGAGCGCGTCACCGAAAAG
EV552327       --> ..................................................
EV537248       --> ..................................................
EW715651       --> ..................................................
EW725472       --> ..................................................
EX747590       --> ..................................................
EY900501       --> ..................................................
FD561313       --> ..................................................

               901    -    951
UN16128        --> GAAACCGGAAACAAAAAGAAAAAACCCAATTAAACCGCAAAAGCATATCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541524       <-- GAAACCGGAAACAAAAAGAAAAAGCCCAATTAAACTATTTCTGCATATCG
EV547260       <-- ..................................................
EY896029       <-- GAAACCGGAAACAAAAAGAAAAAACCCAATTAAACCGCAAAAGCATATCG
EX751748       <-- GAAACCGGAAACAAAAAGAAAAAACCCAATTAAACCGCAAAAGCATATCG
EV552327       --> ..................................................
EV537248       --> ..................................................
EW715651       --> ..................................................
EW725472       --> ..................................................
EX747590       --> ..................................................
EY900501       --> ..................................................
FD561313       --> ..................................................

               951    -   1001
UN16128        --> ATTTGTTCAAAACCTAATCAGCCCCCAAAAAA-CTAGTTTTGTAAAATCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541524       <-- ATTTGTTCAGAACCTAATTAGCCCCCAAAAAA-CTAGTTTTGTAAAATCG
EV547260       <-- ..................................................
EY896029       <-- ATTTGTTCAAAACCTAATCAGCCCCCAAAAAA-CTAGTTTTGTAAAATCG
EX751748       <-- ATTTGTTCAAAACCTAATCAGCCCCCAAAAAAACTAGTTTTGTAAAATCG
EV552327       --> ..................................................
EV537248       --> ..................................................
EW715651       --> ..................................................
EW725472       --> ..................................................
EX747590       --> ..................................................
EY900501       --> ..................................................
FD561313       --> ..................................................

               1001   -   1051
UN16128        --> TAATGAAAAAATAATAATTGTATGTGGTACTATAATCTGTTGTTTGCTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541524       <-- TAATGAAAAA--AATAATTGTATGTGGTACT--AATCTGTTGTTTGCTGT
EV547260       <-- ..................................................
EY896029       <-- TAATGAAAAAATAATAATTGTATGTGGTACTATAATCTGTTGTTTGCTGT
EX751748       <-- TAATGAAAAAATAATAATTGTATGTGGTACTATAATCTGTTGTTTGCTGT
EV552327       --> ..................................................
EV537248       --> ..................................................
EW715651       --> ..................................................
EW725472       --> ..................................................
EX747590       --> ..................................................
EY900501       --> ..................................................
FD561313       --> ..................................................

               1051   -   1101
UN16128        --> ACTTGATCTTTGATTTCCAAATTTGATAATGTGGTGTTGAGAGCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541524       <-- ACTTGATCTTTGATTTCCAAATTTGAT...................
EV547260       <-- ..............................................
EY896029       <-- ACTTGATCTTTGATTTCC............................
EX751748       <-- ACTTGATCTTTGATTTCCAAATTTGATAATGTGGTGTTGAGAGCCC
EV552327       --> ..............................................
EV537248       --> ..............................................
EW715651       --> ..............................................
EW725472       --> ..............................................
EX747590       --> ..............................................
EY900501       --> ..............................................
FD561313       --> ..............................................