1      -     51
UN16134        --> GGACATCTGTATCTATCTTTCTCTCTCTCTCTCTCTCTCTCTTTCTAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD987030       --> GGACATCTGTATCTATCTTTCTCTCTCTCTCTCTCTCTCTCTTTCTAGAG
FD550710       --> .....ggtcagacacatctggtaTCTATCTCTCTCTCTCTCTTTCTAGAG
FD981471       --> .....ggtcagacacatctggtgTCTATCTCTCTCTCTCTCTTTCTAGAG
FD990079       --> ............................................ggAGAG
EW726662       --> ..................................................
EW715024       --> ..................................................
FD938336       --> ..................................................

               51     -    101
UN16134        --> CTGGAGTGAACTGTTGAGCCCTTTGGTTTCATCGAGAGACCCCTAAAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD987030       --> CTGGAGTGAACTGTTGAGCCCTTTGGTTTCATCGAGAGACCCCTAAA-CC  Raphanus raphanistrum subsp. landra
FD550710       --> CTGGAGTGAACTGTTGAGCCCTTTGGTTTCATCGAGAGTCCCCTAAAACC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD981471       --> CTGGAGTGAACTGTTGAGCCCTTTGGTTTCATCGAGAGTCCCCTAAAACC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD990079       --> CTGGAGTGAACTGTTGAGCCCTTTGGTTTCATCGAGAGACCCCTAAA-CC  Raphanus raphanistrum subsp. landra
EW726662       --> ...GAGTGAACTGTTGAGCCCTTTGGTTTCATCGAGAGACCCCTAAAACC  Raphanus sativus cv Early Scarlet Globe
EW715024       --> .....ggGAACTGTTGAGCCCTTTGGTTTCATCGAGAGACCCCTAAA-CC  Raphanus sativus var. oleiformis
FD938336       --> .....ggaAACTGTTGAGCCCTTTGGTTTCATCGAGAGACCCCTAAAACC  Raphanus sativus var. oleiformis

               101    -    151
UN16134        --> CGATCTAGGTGAAGAATGGCGTCTTCTTCTTCTTCGTTCTCCCTCACCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD987030       --> CAATCTAGGTGAAGAATGGCGTCTTCTTCTTCTTCGTTCTCCCTCACCTC
FD550710       --> CGATCTAGGTGAAGAATCGCGTCTTCTTCTTCTTCGTTCTCCCTCACCTC
FD981471       --> CGATCTAGGTGAAGAATGGCGTCTTCTTCTTCTTCGTTCTCCCTCACCTC
FD990079       --> CGATCTAGGTGAAGAATGGCGTCTTCTTCTTCTTCGTTCTCCCTCACCTC
EW726662       --> AGATCTAGGTGAAGAATGGCGTCTTCTTCTTCTTCGTTCTCCCTCACCTC
EW715024       --> CGATCTAGGTGAAGAATGGCGTCTTCTTCTTCTTCGTTCTCCCTCACCTC
FD938336       --> CGATCTAGGTGAAGAATGGCGTCTTCTTCTTCTTCCTTCTCCCTCACCTC

               151    -    201
UN16134        --> TCCGGCTGCTTCCGTCTATGGAGGAGCCACTCAAACCTCGTCGCAGTTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD987030       --> TCCGGCTGCTTCCGTCTATGGAACTGCCACTCAAACCTCGTCGCAGTTAC
FD550710       --> TCCGGCTGCTTCCGTCTATGGAGGAGCCACTCAAACCTCGTCGCAGTTAC
FD981471       --> TCCGGCTGCTTCCGTCTATGGAGGAGCCACTCAAACCTCGTCGCAGTTAC
FD990079       --> TCCGGCTGCTTCCGTCTATGGAACTGCCACTCAAACCT............
EW726662       --> TCCGGCTGCTTCCGTCTATGGAGGAGCCACTCAAACCTCGTCGCAGTTAC
EW715024       --> TCCGGCTGCT........................................
FD938336       --> TCCGGCTGCTTCCGTCTATGGAGGAGCCACTCGAAACTCGTCGCAGTTAC

               201    -    251
UN16134        --> CTCTCCCAACCACTCGCTCTCGCCTCCCTCGCAGAGTTTCCTTCCGTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD987030       --> CTCTCCCGACCACTCGCTCTCGTCTCCCTCGCAGAGTTTCCTTCCGTCTC
FD550710       --> CTCTCCCAACCACTCGCTCTCGCCTCCCTCGCAGAGTTTCCTTCCGTCTC
FD981471       --> CTCTCCCAACCACTCGCTCTCGCCTCCCTCGCAGAGTTTCCTTCCGTCTC
FD990079       --> ..................................................
EW726662       --> CTCTCCCAACCACTCGCTCTCGCCTCCCTCGCAGAGTTTCCTTCCGTCTC
EW715024       --> ..................................................
FD938336       --> CTCTCCCAACCACTCGCTCTCGTCTCCCTCGCAGAGTTTCGTTCCGTCTC

               251    -    301
UN16134        --> TCCTCCGCCAAGCCTAAGCTTCGCTTTCTCTCCAAGCCTACTCGCAGTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD987030       --> TCCTCCGCCAAGCCTAAGCTTCGCTTTCTCTCCAAGCCTTCTCGCAGTAG
FD550710       --> TCCTCCGCCAAGCCTAAGCTTCGCTTTCTCTCCAAGCCTACTCGCAGTAG
FD981471       --> TCCTCCGCCAAGCCTAAGCTTCGCTTTCTCTCCAAGCCTACTCGCAGTAG
FD990079       --> ..................................................
EW726662       --> TCCTCCGCCAAGCCTAAGCT-CGCTTTCTCTCCAAGCCTACTCGCAGTAG
EW715024       --> ..................................................
FD938336       --> TCCTCCGCCAAGCCTAAGCTTCGCTTTCTCTCCAAGCCTACTCGCAGTAG

               301    -    351
UN16134        --> CTACCCTGTGGTGAAAGCCCTATCTAACCAGGTTGGTGGAGGTGCATCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD987030       --> CTACCCTGTGGTGAAAGCCCTATCTAACCAGGTTGGTGGAGGTGCATCAT
FD550710       --> CTACCCTGTGGTGAAAGCCCTATCTAACCAGGTTGGTGGAGGTGCATCAT
FD981471       --> CTACCCTGTGGTGAAAGCCCTATCTAACCAGGTTGGTGGAGGTGCATCAT
FD990079       --> ..................................................
EW726662       --> CTACCCTGTGGTGAAAGCCCTTTCTAACCAGGTTGGTGGAGGTGCATCAT
EW715024       --> ..................................................
FD938336       --> CCACCCTGTGGTGAAAGCCCTTTCTAACCAGGTTGGTGGAGGTGCATCAT

               351    -    401
UN16134        --> CAAATGCTTCAGCTCCTGCAGGACCCTCAGCTGAAGGAAAGGATACAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD987030       --> CAAATGCTTCAGCTCCTGCAGGACCCTCAGCTGAAGGAAAGGATACAAAC
FD550710       --> CAAATGCTTCAGCTCCTGCAGGACCCTCAGCTGAAGGAAAGGATACAAAC
FD981471       --> CAAATGCTTCAGCTCCTGCAGGACCCTCAGCTGAAGGAAAGGATACAAAC
FD990079       --> ..................................................
EW726662       --> CAAATGCTTCAGCTCCTGCAGGACCCTCAGCTGAAGGAAAGGATACAAAC
EW715024       --> ..................................................
FD938336       --> CAAATGCTTCAGCTCCTGCAGGACCCTCAGCTGAAGGAAAGGATACAAAC

               401    -    451
UN16134        --> TCATCAAAAGACTCTTCTTCACCTGATTTAGCTACAGAGGAGTCTATCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD987030       --> TCATCAAAAGACTCTTCTTCACCTGATTTAGCTACAGAGGAGTCTATCTC
FD550710       --> TCATCAAAAGACTCTTCTTCACCTGATTTAGCTACAGAGGAGTCTATCTC
FD981471       --> TCATCAAAAGACTCTTCTTCACCTGATTTAGCTACAGAGGAGTCTATCTC
FD990079       --> ..................................................
EW726662       --> TCATCAAAAGACTCTTCTTCACCTGATTTAGCTACAGAGGAGTCTATCTC
EW715024       --> ..................................................
FD938336       --> TCATCAAAAGACTCTTCTTCACCTGATTTAGCTACAGAGGAGTCTATCTC

               451    -    501
UN16134        --> TGAGTTCCTGACCCAAGTCACAACTCTTGTCAAGCTTGTGGATTCTAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD987030       --> TGAGTTCCTGACCCAAGTCACAACTCTTGCCAAGCTTGTGGATTCTAGAG
FD550710       --> TGAGTTCCTGACCCAAGTCACAACTCTTGTCAAGCTTGTGGATTCTAGAG
FD981471       --> TGAGTTCCTGACCCAAGTCACAACTCTTGTCAAGCTTGTGGATTCTAGAG
FD990079       --> ..................................................
EW726662       --> TGAGTTCCTGACCCAAGTCACAACTCTTGTCAAGCTTGTGGATTCTAGAG
EW715024       --> ..................................................
FD938336       --> TGAGTTCCTGACCCAAGTCACAACTCTTGTCAAGCTTGTGGATTCTAGAG

               501    -    551
UN16134        --> ACATTGTCGAGTTGCAGCTGAAACAACTCGACTGTGAGCTTGTCATCCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD987030       --> ACATTGTCGAGTTGCAGCTGAAACAACTCGACTGTGAGCTTGTCATCCGG
FD550710       --> ACATTGTCGAGTTGCAGCTGAAACAACTCGACTGTGAACTTGTCATCCGG
FD981471       --> ACATTGTCGAGTTGCAGCTGAAACAACTCGACTGTGAACTTGTCATCCGG
FD990079       --> ..................................................
EW726662       --> ACATTGTCGAGTTGCAGCTGAAACAACTCGACTGTGAGCTTGTCATCCGG
EW715024       --> ..................................................
FD938336       --> ACATTGTCGAGTTGCAGTTGAAACAGCTCGACTGTGAGCTTGTCATCCGG

               551    -    601
UN16134        --> AAAAAGGAAGCCTTACCTCAGGCACAAGCCCCTGCGCCTTATGTTATGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD987030       --> AAAAAGGAAGCCTTACCTCAGGCACAAAACCCTGCGCCCTATGTTATGAT
FD550710       --> AAAAAGGAAGCCTTACCTCAGGCACAAGCCCCTGCGCCTTATGTTATGAT
FD981471       --> AAAAAGGAAGCCTTACCTCAGGCACAAGCCCCTGCGCCTTATGTTATGAT
FD990079       --> ..................................................
EW726662       --> AAAAAGGAAGCCTTACCTCAACCACAAGCCCCTGCGCCCTATGTTATGAT
EW715024       --> ..................................................
FD938336       --> AAAAAGGAAGCCTTACCTCAACCACAAGCCCCTGCGCCTTATGTTATGAT

               601    -    651
UN16134        --> GCAGCAACCAAACCAACCATCTTATGTGCAAGCAACGGCTCCTCCTCCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD987030       --> GCAGCAACCAAACCAACCATCTTATGTGCAAGCAACGGCTCCTCCTCCTT
FD550710       --> GCAGCAACCAAACCAACCATCTTATGTGCAAGCAACGGCTCCTCCTCCTT
FD981471       --> GCAGCAACCAAACCAACCATCTTATGTGCAAGCAACGGCTCCTCCTCCTT
FD990079       --> ..................................................
EW726662       --> GCAGCAACCAAACCAACCATCTTATGTGCAAGCAACGGCTCCTCCTCCTT
EW715024       --> ..................................................
FD938336       --> GCAGCAACCAAACCAACCATCTTATGTGCAAGCAACGGCTCCTCCTCCTT

               651    -    701
UN16134        --> CTGCTCCTGCTGCCTCACCTCCACCTTCTTCTACTCCAGCCTCTTTGCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD987030       --> CTGCTCCTGCTGCCTCACCTCCACCTTCTTCTACTCCAGCCTCTTTGCCC
FD550710       --> CTGCTCCTGCTGCCTCACCTCCACCTTCTTCTACTCCAGCTTCTTTGCCC
FD981471       --> CTGCTCCTGCTGCCTCACCTCCACCTTCTTCTACTCCAGCTTCTTTGCCC
FD990079       --> ..................................................
EW726662       --> CTGCACCTGCTGCCTCACCTCCACCTTCCTCTACTCCAGCCTCTTTGCCC
EW715024       --> ..................................................
FD938336       --> CTGCACCTGCTGCCTCACCTCCACCTTCTTCTACTCCAGCCTCTTTGCCC

               701    -    751
UN16134        --> GCACCATCCCCACCTAGTCCAGCGAAATCATCGCTTCCAACTGTTAAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD987030       --> GCACCATCTCCACCTAGTCCAGCGAAATCATCGCTTCCAACTGTTAAAAG
FD550710       --> GCACCATCCCCACCTAGTCCAGCGAAATCATTGCTTCCAACTGTTAAAGT
FD981471       --> GCACCATCCCCACCTAGTCCAGCGAAATCATCGCTTCCAACTGTTAAA-G
FD990079       --> ..................................................
EW726662       --> GCACCATCCCCACCTACTCCAGCGAAATCATCGCTTCCTACTGCTAAAAG
EW715024       --> ..................................................
FD938336       --> GCACCATCTCCACCTAGTCCAGCGAAATCATCGCTTCCAACTGTTAAAAG

               751    -    801
UN16134        --> TCC-ATGGCAGCACATTTTACCGCAGTCCGGGACCTGGTGAACCACCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD987030       --> TCC-ATGGCAGCAC....................................
FD550710       --> CCC-ATGGCAGCACATTTTACCGCAGTCCAGGAC-TGGTGA--CACCTTT
FD981471       --> TCC-ATGGCAGCACATTTTACCGCAGT.......................
FD990079       --> ..................................................
EW726662       --> TCC-ATGGCAGCACATTTTACCGCAGT.......................
EW715024       --> ..................................................
FD938336       --> TCCCATGGCAGCACATTCTACCGCAGTCCGGGACCTGGTGAACCACCTTT

               801    -    851
UN16134        --> TATCAGTTGGAGACAAGTGCAGAAGGGCAAGTTCTATGCATCGTCGAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD987030       --> ..................................................
FD550710       --> TA................................................
FD981471       --> ..................................................
FD990079       --> ..................................................
EW726662       --> ..................................................
EW715024       --> ..................................................
FD938336       --> TATCAGTTGGAGACAAGTGCAGAAGGGCAAGTTCTATGCATCGTCGAGCA

               851    -    901
UN16134        --> TGAAGTAGTGATGAATAGAGTCTGATCAACCGGAACGTAGTGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD987030       --> ............................................
FD550710       --> ............................................
FD981471       --> ............................................
FD990079       --> ............................................
EW726662       --> ............................................
EW715024       --> ............................................
FD938336       --> TGAAGTAGTGATGAATAGAGTCTGATCAACCGGAACGTAGTGGA