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Alignment for radish unigene UN16171

               1      -     51
UN16171        --> AATTAAAGAAGGTCGATCATGATGATAATACTATAGTACAAGCAGTAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716799       <-- .ATTAAAGAAGGTCGATCATGATGATA-TACTATAGTACAAGCAGTAAAC
FD988739       <-- ..................................................
EY915817       <-- ..................................................
FD558352       <-- ..................................................
FD569643       <-- ..................................................
EY913395       <-- ..................................................
EY937741       <-- ..................................................
EX888240       <-- ..................................................
EX747692       <-- ..................................................
EW721128       --> AATTAAAGAAGGTCGATCATGATGATAATACTATAGTACAAGCAGTAAAC
EX892213       --> ....AAAGAAGGTCGATCATGATGATAATACTATAGTACAAGCAGTAAAC

               51     -    101
UN16171        --> CACAATGATTTATAACAAGTTTCTTATCTACTCTCGACTTATTTAATAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716799       <-- CACAATGATTTATAACAAGTTTCTTATCTACTCTCGACTTATTTAATAGT
FD988739       <-- ..................................................
EY915817       <-- ..................................................
FD558352       <-- ..................................................
FD569643       <-- ..................................................
EY913395       <-- ..................................................
EY937741       <-- ..................................................
EX888240       <-- ..................................................
EX747692       <-- ..................................................
EW721128       --> CACAATGATTTATAACAAGTTTCTTATCTACTCTCGACTTATTTAATAGT
EX892213       --> CACGATGATTTATAACAAGTTTCTTATCTACTCTCGACTTATTTAATAGT

               101    -    151
UN16171        --> TGATCATAATTAGTTTCTACTTGTAATTGCAAGCAGAAAACATCCGTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716799       <-- TGATCATAATTAGTTTCTACTTGTAATTGCAAGCAGAAAACATCCGTCTC
FD988739       <-- ..................................................
EY915817       <-- ..................................................
FD558352       <-- ..................................................
FD569643       <-- ..................................................
EY913395       <-- ..................................................
EY937741       <-- ..................................................
EX888240       <-- ..................................................
EX747692       <-- ..................................................
EW721128       --> TGATCATAATTAGTTTCTACTTGTAATTGCAAGCAGAAAACATCCGTCTC
EX892213       --> TGATCATAATTAGTTTCTACTTGTAATTGCAAGCAGAAAACATCCGTCTC

               151    -    201
UN16171        --> AAGCAGAAGTTTCACTACTCTCACGTTTTACCTCTTACTCCCCAACCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716799       <-- AAGCAGAAGTTTCACTACTCTCACGTTTTACCTCTTACTCCCCAACCAAA
FD988739       <-- ..................................................
EY915817       <-- ..................................................
FD558352       <-- ..................................................
FD569643       <-- ..................................................
EY913395       <-- ..................................................
EY937741       <-- ..................................................
EX888240       <-- ..................................................
EX747692       <-- ..................................................
EW721128       --> AAGCAGAAGTTTCACTACTCTCACGTTTTACCTCTTACTCCCCAACCAAA
EX892213       --> AAGCAGAAGTTTCACTACTCTCACGTTTTACCTCTTACTCCCCAACCAAA

               201    -    251
UN16171        --> AGAGACTTGATGATCTTATCAGTCACCCCTTCCACAAGAGGTAACAAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716799       <-- AGAGACTTGATGATCTTATCAGTCACCCCTTCCACAAGAGGTAACAAATG
FD988739       <-- ..................................................
EY915817       <-- ..................................................
FD558352       <-- ..................................................
FD569643       <-- ..................................................
EY913395       <-- ..................................................
EY937741       <-- ..................................................
EX888240       <-- ..................................................
EX747692       <-- ..................................................
EW721128       --> AGAGACTTGATGATCTTATCAGTCACCCCTTCCACAAGAGGTAACAAATG
EX892213       --> A-AGACTTGATGATCTTACCAGTCACCCCTTCCACAAGAGGTAACAAATG

               251    -    301
UN16171        --> TCCGGATCCTGAGATTTCATGGTAATGAATCCATGGAAGCTTTGATGCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716799       <-- TCCGGATCCTGAGATTTCATGGTAATGAATCCATGGAAGCTTTGATGCTA
FD988739       <-- ..................................................
EY915817       <-- ..................................................
FD558352       <-- ..................................................
FD569643       <-- ..................................................
EY913395       <-- ..................................................
EY937741       <-- ..................................................
EX888240       <-- ..................................................
EX747692       <-- ..................................................
EW721128       --> TCCGGATCCTGAGATTTCATGGTAATGAATCCATGGAAGCTTTGATGCTA
EX892213       --> TCCGGATCCTGAGATTTCATGGTAATGAATCCATGGAAGCTTTGATGCTA

               301    -    351
UN16171        --> TATAACTCTGAAGCTTCACTGGCACAAACCTGTCCTCATCACCATGCCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716799       <-- TATAACTCTGAAGCTTCACTGGCACAAACCTGTCCTCATCACCATGCCAT
FD988739       <-- .......................cacAACCTGTCCTCATCACCATGCCAT
EY915817       <-- ..................................................
FD558352       <-- ..................................................
FD569643       <-- ..................................................
EY913395       <-- ..................................................
EY937741       <-- ..................................................
EX888240       <-- ..................................................
EX747692       <-- ..................................................
EW721128       --> TATAACTCTGAAGCTTCACTGGCACAAACCTGTCCTCATCACCATGCCAT
EX892213       --> TATAACTCTGAAGCTTCACTGGCACAAACCTGTCCTCATCACCATGCCAT

               351    -    401
UN16171        --> AAGTGAACCGAGCCATTCTTGTTCGGGAACGGATCTTGAAGGTCTAAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716799       <-- AAGTGAACCGAGCCATTCTTGTTCGGGAACGGATCTTGAAGGTCTAAAGG
FD988739       <-- AAGTGA-CCGAGCCATT-TTGTTCGGGAACGGATCTTGAAGGTCTAAAGG
EY915817       <-- ..................................................
FD558352       <-- ..................................................
FD569643       <-- ..................................................
EY913395       <-- ..................................................
EY937741       <-- ..................................................
EX888240       <-- ..................................................
EX747692       <-- ..................................................
EW721128       --> AAGTGAACCGAGCCATTCTTGTTCGGGAACGGATCTTGAAGGTCTAAAGG
EX892213       --> AAGTGAACCGAGCCATTCTTGCTCGGGAACGGATCTTGAAGGTCTAAAGG

               401    -    451
UN16171        --> ATCGAACTCCCAGCTTGAAAATCCAACATTCAAATCTCGGTGTAGGCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716799       <-- ATCGAACTCCCAGCTTGAAAATCCAACATTCAAATCTCGGTGTAGGCTTT
FD988739       <-- ATCGAACTCCCAGCTTGAAAATCCA-CATTCAAATCTCGGTGTAGGCTTT
EY915817       <-- ..................................................
FD558352       <-- ..................................................
FD569643       <-- ..................................................
EY913395       <-- ..................................................
EY937741       <-- ..................................................
EX888240       <-- ..................................................
EX747692       <-- ..................................................
EW721128       --> ATCGAACTCCCAGCTTGAAAATCCAACATTCAAATCTCGGTGTAGGCTTT
EX892213       --> ATCGAACTCCCAGCTTGAAAATCCAACATTCAAATCTCGGTGTAGGCTTT

               451    -    501
UN16171        --> CGTATTCACCTTGTTGTCTTGTGTATGCCCGATTTGGACTGATGAATCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716799       <-- CGTATTCACCTTGTTGTCTTGTGTATGCCCGATTTGGACTGATGAATCCG
FD988739       <-- CGTATTCACCTTGTTGTCTTGTGTATGCCCGATTTGGA-TGATGAATCCG
EY915817       <-- .....................................ACTGATGAATCCG
FD558352       <-- ..................................................
FD569643       <-- ..................................................
EY913395       <-- ..................................................
EY937741       <-- ..................................................
EX888240       <-- ..................................................
EX747692       <-- ..................................................
EW721128       --> CGTATTCACCTTGTTGTCTTGTGTATGCCCGATTTGGACTGATGAATCCG
EX892213       --> CGTATTCACCTTGTTGTCTTGTGTATGCCCGATTTGGACTGATGAATCCG

               501    -    551
UN16171        --> AGCTTAGACAAGACCTCCATGTCCTGACGGGAGAAAATGATGGGGTTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716799       <-- AGCTTAGACAAGACCTCCATGTCCTGACGGGAGAAAATGATGGGGTTTCC
FD988739       <-- AGCTTAGACAAGACCTCCATGTCCTGACGGGAGAAAATGATGGGGTTCCC
EY915817       <-- AGCTTAGACAGGAC-TCCATGTC-TGACGGGAGAAAATGATGGGGTTTCC
FD558352       <-- ..........................ACGGGAGAAAATGATGGGGTTTCC
FD569643       <-- ..................................................
EY913395       <-- ..................................................
EY937741       <-- ..................................................
EX888240       <-- ..................................................
EX747692       <-- ..................................................
EW721128       --> AGCTTAGACAAGACCTCCATGTCCTGACGGGAGAAAATGATGGGGTTTCC
EX892213       --> AGCTTAGACAAGACCTCCATGTCCTGACGGGAGAAAATGATGGGGTTTCC

               551    -    601
UN16171        --> AGCGATCACATTGGAGATCGGGAACCATTTCTGAGTGTTCCACCAATACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716799       <-- AGCGATCACATTGGAGATCGGGAACCATTTCTGAGTGTTCCACCAATACG
FD988739       <-- AGCGATCACATTGGAGATTGGGAACCATTTtgagc...............
EY915817       <-- AGCGATCACATTGAAGATTGGGAACCATTTCTGAGTGTTCCACCAATACG
FD558352       <-- AGCGACCACATTGGAGATCGGGAACCATTTCTGAGTGTTCCACCAATACG
FD569643       <-- ..................................................
EY913395       <-- ..................................................
EY937741       <-- ..................................................
EX888240       <-- ..................................................
EX747692       <-- ..................................................
EW721128       --> AGCGATCACATTGGAGATCGGGAACCATTTCTGAGTGTTCCACCAATACG
EX892213       --> AGCGATCACATTGGAGATCGGGAACCATTTCTGAGTGTTCCACCAATACG

               601    -    651
UN16171        --> TAAGCCAAGGAGCATAGTGAGCTACGCGAAGTGACCATTGATCTGCAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716799       <-- TAAGCCAAGGAGCATAGTGAGCTACGCGAAGTGACCATTGATCTGCAGGA
FD988739       <-- ..................................................
EY915817       <-- TAAGCCAAGGAGCACAGTGAGCTACGCGAAGTGACCATTGATCTGCAGGG
FD558352       <-- TAAGCCAAGGAGCATAGTGAGCTACGCGAAGTGACCATTGATCTGCAGGA
FD569643       <-- ..................................................
EY913395       <-- ..................................................
EY937741       <-- ..................................................
EX888240       <-- ..................................................
EX747692       <-- ..................................................
EW721128       --> TAAGCCAAGGAGCATAGTGAGCTACGCGAAGTGACCATTGATCTGCAG-A
EX892213       --> TAAGCCAAGGAGCATAGTGAGCTACGCGAAGTGACCATTGATCTGCAGGA

               651    -    701
UN16171        --> TACATAAGTGAGAAAGCTTCTCTTGTTATGTCTCCTGGTAAGTTCCTCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716799       <-- TACATAAGTGAGAAAGCTTCTCTTGTTATGTCTCCTGGTAAGTTCCTCCA
FD988739       <-- ..................................................
EY915817       <-- TACATAAGAGAGAAAGCTTCTCTTGTTATGTCTCCTGGTAAGTTTCTCCA
FD558352       <-- TACATGAGTGAGAAAGCTTCTCTTGTTATGTCTCCTGGTAAGTTCCTCCA
FD569643       <-- ......................................TAAGTTCCTCCA
EY913395       <-- ..................................................
EY937741       <-- ..................................................
EX888240       <-- ..................................................
EX747692       <-- ..................................................
EW721128       --> TACATAAGTGAGAAAGCTTCTCTTGTTATGTCTCCTGGTAAGTTCCTCCA
EX892213       --> TACATAAGTGAGAAAGCTTCTCTTGTTATGTCTCCTGGTAAGTTCCTCCA

               701    -    751
UN16171        --> CCAGTAGTTAATCGCTGGTGCTACAAGCGCTGCTCCTGCTAACCTGTGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716799       <-- CCAGTAGTTAATCGCTGGTGCTACAAGCGCTGCTCCTGCTAACCTGTGAG
FD988739       <-- ..................................................
EY915817       <-- CCAGTAGTTAATCGCTGGTGCTACAAGCGCTGCTCCTGCTAACCTGTGAG
FD558352       <-- CCAGTAGTTAATCACTGGTGCTACAAGCGCTGCTCCTGCTAACCTGTGAG
FD569643       <-- CCAGTAGTTAATCGCTGGTGCTACAAGCGCTGCTCCTGCTAACCTGTGAG
EY913395       <-- .......................................TAACCTGTGAG
EY937741       <-- .............................................GTGAG
EX888240       <-- ...............................................GAG
EX747692       <-- ..................................................
EW721128       --> CCAGTAGTTAATCGCTGGTGCTACAAGCGCTGCTCCTGCTAACtg.....
EX892213       --> CCAGTAGTTAATCGCTGGTGCTACAAGCGCTGCTCCTGCTAACCTGTGAG

               751    -    801
UN16171        --> GAATGTACTTAAGACATGCCCAAGTGATTTCACCACCCATGGAGAGACCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716799       <-- GAATGTACTTAAGgcc..................................
FD988739       <-- ..................................................
EY915817       <-- GAATGTACTTAAGACATGCCCAAGTGATTTCACCACCCATGGAGAGACCA
FD558352       <-- GAATGTACTTAAGGCATGCCCAAGTGATTTCACCACCCATGGAGAGACCA
FD569643       <-- GAATGTACTTAAGACATGCCCAAGTGATTTCACCACCCATGGAGAGACCA
EY913395       <-- GAATGTACTTAAGACATGCCCAAGTGATTTCACCACCCATGGAGAGACCA
EY937741       <-- GAATGTACTTAAGACATGCCCAAGTGATTTCACCACCCATGGAGAGACCA
EX888240       <-- GAATGTACTTAAGGCATGCCCAAGTGATTTCACCACCCATGGAGAGACCA
EX747692       <-- .......................GTGATTTCACCACCCATGGAGAGACCA
EW721128       --> ..................................................
EX892213       --> GAATG.............................................

               801    -    851
UN16171        --> AAGACATAGAAGTTAGGTCCTAGTCCTAACCCATCAGCCAGCTCTTCTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716799       <-- ..................................................
FD988739       <-- ..................................................
EY915817       <-- AAGACATAGAAGTTAGGTCCTAGTCCTAACCCATCAGCCAGCTCTTCTAT
FD558352       <-- AAGACATAGAAGTTAGGTCCTAGTCCTAACCCATCAGCCAGCTCTTCTAT
FD569643       <-- AAGACATAGAAGTTAGGTCCTAGTCCTAACCCATCAGCCAGCTCTTCTAC
EY913395       <-- AAGACATAGAAGTTAGGTCCTAGTCCTAACCCATCAGCCAGCTCTTCTAT
EY937741       <-- AAGACATAGAAGTTAGGTCCTAGTCCTAACCCATCAGCCAGCTCTTCTAC
EX888240       <-- AAGACATAGAAGTTAGGTCCTAGTCCTAACCCATCAGCCAGCTCTTCTAT
EX747692       <-- AAGACATAGAAGTTAGGTCCTAGTCCTAACCCATCAGCCAGCTCTTCTAT
EW721128       --> ..................................................
EX892213       --> ..................................................

               851    -    901
UN16171        --> ATCCAATGCTATGCTTCTCGGTGATCGGTTCGGGTCAGGATCACTCTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716799       <-- ..................................................  Raphanus sativus var. oleiformis
FD988739       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY915817       <-- ATCCAATGCTATGCTTCTCGGTGATCGGTTCGGGTCATGATCACTCTCTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD558352       <-- ATCCAATGCTATGCTTCTCGGTGATCGGTTCGGGTCAGGATCACTCTCTC  Raphanus raphanistrum subsp. landra
FD569643       <-- ATCCAATGCTATGCTTCTCGGTGATCGGTTCGGGTCAGGATCACTCTCTC  Raphanus sativus cv Early Scarlet Globe
EY913395       <-- ATCCAATGCTATGCTTCTCGGTGATCGGTTCGGGTCATGATCACTCTCTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY937741       <-- ATCCAATGCTATGCTTCTCGGTGATCGGTTCGGGTCAGGATCACTCTCTC  Raphanus sativus cv Early Scarlet Globe
EX888240       <-- ATCCAATGCTATGCTTCTCGGTGATCGGTTCGGGTCAGGATCACTCTCTC  Raphanus sativus var. oleiformis
EX747692       <-- ATCCAATGCCATGCTTCTCGGTGATCGGTTCGGGTCATGATCACTCTCTC  Raphanus raphanistrum subsp. maritimus
EW721128       --> ..................................................  Raphanus sativus var. oleiformis
EX892213       --> ..................................................  Raphanus sativus var. oleiformis

               901    -    951
UN16171        --> CGTAACCAGGACGGTCGAAAGACACAGTGTATATCCTCAACTCCTCCACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716799       <-- ..................................................
FD988739       <-- ..................................................
EY915817       <-- CGTAACCAGGACGGTCGAAAGACACAGTGTATATCCTCAACTCCTCCACA
FD558352       <-- CGTAACCAGGACGGTCGAAAGACACAGTGTATATCCTCAACTCCTCCACA
FD569643       <-- CGTAACCAGGACGGTCGAAAGACACAGTGTATATCCTCAACTCCTCCACA
EY913395       <-- CGTAACCAGGACGGTCGAAAGACACAGTGTATATCCTCAACTCCTCCACA
EY937741       <-- CGTAACCAGGACGGTCGAAAGACACAGTGTATATCCTCAACTCCTCCACA
EX888240       <-- CGTAACCAGGACGGTCGAAAGACACAGTGTATATCCTCAACTCCTCCACA
EX747692       <-- CGTAACCAGGACGGTCGAAAGACACAGTGTATATCCTCAACTCCTCCACA
EW721128       --> ..................................................
EX892213       --> ..................................................

               951    -   1001
UN16171        --> AGAGCCGGCGATAAGAAATAGGGGAAAGGCGAGTCGAGCATACTAGAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716799       <-- ..................................................  Raphanus sativus var. oleiformis
FD988739       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY915817       <-- AGAGCCGGCGATAAGAAAAAGGGGAAAGGCGAGTCGAGCATACTAGAATC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD558352       <-- AGAGCCGGCGATAAGAAATAGGGGAAAGGCGAGTCGAGCATACTAGAATC  Raphanus raphanistrum subsp. landra
FD569643       <-- AGAGCCGGCGATAAGAAATAGGGGAAAGGCGAGTCGAGCATACTAGAATC  Raphanus sativus cv Early Scarlet Globe
EY913395       <-- AGAGCCGGCGATAAGAAAAAGGGGAAAGGCGAGTCGAGCATACTAGAATC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY937741       <-- AGAGCCGGCGATAAGAAATAGGGGAAAGGCGAGTCGAGCATACTAGAATC  Raphanus sativus cv Early Scarlet Globe
EX888240       <-- AGAGCCGGCGATAAGAAATAGGGGAAAGGCGAGTCGAGCATACTAGAATC  Raphanus sativus var. oleiformis
EX747692       <-- AGAGCCGGCGATAAGAAAAAGGGGAAAGGCGAGTCGAGCATACTAGAATC  Raphanus raphanistrum subsp. maritimus
EW721128       --> ..................................................  Raphanus sativus var. oleiformis
EX892213       --> ..................................................  Raphanus sativus var. oleiformis

               1001   -   1051
UN16171        --> GAAGCCGTGGATGTATATGATTTTGAACTTGGCTTCGTCTCTATGAACTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716799       <-- ..................................................
FD988739       <-- ..................................................
EY915817       <-- GAAGCCGTGGATGTATATGATTTTGAACTTGGCTTCGTCTCTATGAACTC
FD558352       <-- GAAGCCGTGGATGTATATGATTTTGAACTTGGCTTCG.............
FD569643       <-- GAAGCCGTGGATGTATATGATTTTGAACTTGGCTTCGTCTCTATGAACTC
EY913395       <-- GAAGCCGTGGATGTATATGATTTTGAACTTGGCTTCGTCTCTATGAACTC
EY937741       <-- GAAGCCGTGGATGTATATGATTTTGAACTTGGCTTCGTCTCTATGAACTC
EX888240       <-- GAAGCCGTGGATGTATATGATTTTGAACTTGGCTTCGTCTCTATGAACTC
EX747692       <-- GAAGCCGTGGATGTATATGATTTTGAACTTGGCTTCGTCTCTATGAACTC
EW721128       --> ..................................................
EX892213       --> ..................................................

               1051   -   1101
UN16171        --> CGTGCTCCTTGTAAGCCAAATGTCTTCCGTCTCTCAATTTAATCCTCGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716799       <-- ..................................................
FD988739       <-- ..................................................
EY915817       <-- CGTGCTCCTTGTAAGCCAAATGTCTTCCGTCTCTCAATTTAATCCTCGGT
FD558352       <-- ..................................................
FD569643       <-- CGTGCTCCTTGTAAGCCAAATGCCTTCCGTCTCTCAATTTAATCCTCGGT
EY913395       <-- CGTGCTCCTTGTAAGCCAAATGTCTTCCGTCTCTCAATTTAATCCTCGGT
EY937741       <-- CGTGCTCCTTGTAAGCCAAATGTCTTCCGTCTCTCAATTTAATCCTCGGT
EX888240       <-- CGTGCTCCTTGTACGCCAAATGTCTTCCGTCTCTCAATTTAATCCTCGGT
EX747692       <-- CGTGC-CCTTGTAAGCCAAATGTCTTCCGTCTCTCAATTTAATCCTCGGT
EW721128       --> ..................................................
EX892213       --> ..................................................

               1101   -   1151
UN16171        --> GCTGTCACGGCGGCCCCTCCGGGAGAGCCGACGGTTTTTGGCGGTGGTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716799       <-- ..................................................
FD988739       <-- ..................................................
EY915817       <-- GCTGTCACGGCGGCCCCTCCGGGAGAGCCGACGGTTTTTGGCGGTGGTGG
FD558352       <-- ..................................................
FD569643       <-- GCTGTCACGGCGGCCCCTCCGGGAGAGCCGACGGTTTTTGGCGGTGGTGG
EY913395       <-- GCTGTCACGGCGGCCCCTCCGGGAGAGCCGACGGTTTTTGGCGGTGGTGG
EY937741       <-- GCTGTCACGGCGGCCCCTCCGGGAGAGCCGACGGTTTTTGGCGGTGGTGG
EX888240       <-- GCTGTCACGGCG-CCCCTCCGGGAGAGCCGACGGTTTTTGGCGGTGGTGG
EX747692       <-- GCTGTCACGGCGGCCCCTCCGGGAGAGCCGACGGTTTTTGGCGGTGGTGG
EW721128       --> ..................................................
EX892213       --> ..................................................

               1151   -   1201
UN16171        --> TTGGATTGATTGATAAACCCATGCCGAAGCTCCGACGAACAACACCAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716799       <-- ..................................................
FD988739       <-- ..................................................
EY915817       <-- TTGGATTGATTGATAAACCCATGCCGAAGCTCCGACc.............
FD558352       <-- ..................................................
FD569643       <-- TTGGATTGATTGATAAACCCATGCCGAAGCTCCGACGAACAACACCAGGA
EY913395       <-- TTGGATTGATTGATAAACCCATGCCGAAGCTCCGACGAACAACACCAGGA
EY937741       <-- TTGGATTGATTGATAAACCCATGCCGAAGCTCCGACGAACAACACCAGGA
EX888240       <-- TTGGATTGATTGATAAACCCATGCCGAAGCTCCGACGAACAACACCAGGA
EX747692       <-- TTGGATTGATTGATAAACCCATGCCGAAGCTCCGACGAACAACACCAGGA
EW721128       --> ..................................................
EX892213       --> ..................................................

               1201   -   1251
UN16171        --> GAATCGTCTTCAAGTAGTCAAAAGAAGATCCTCCTTGAGTGTTTCTTGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716799       <-- ..................................................
FD988739       <-- ..................................................
EY915817       <-- ..................................................
FD558352       <-- ..................................................
FD569643       <-- GAATCGTCTTCAAGTAGTCtcc............................
EY913395       <-- GAATCGTCTTCAAGTAGTCAAAAGAAGATCCTCCTTGAGTGTTTCTTGTG
EY937741       <-- GAATCGTCTTCAAGTAGTCAAAAGAAGATCCTCCTTGAGTGTTTCTTGTG
EX888240       <-- GAATCGTCTTCAGGTAGTCAAAAGAAGATCCTCCTTGAGTGTGTCTTGTG
EX747692       <-- GAATCGTCTTCAAGTAGTCAAAAGAAGATCCTCCTTGAGTGTTTCTTGTG
EW721128       --> ..................................................
EX892213       --> ..................................................

               1251   -   1301
UN16171        --> TGAGATCTTGCAGTAGCTGCAGATATATTTTTCCTATCTGTTTCTTCTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716799       <-- ..................................................
FD988739       <-- ..................................................
EY915817       <-- ..................................................
FD558352       <-- ..................................................
FD569643       <-- ..................................................
EY913395       <-- TGAGATCTTGCAGTAGCTGCAGATATATTTTTCCTATCTGTTTCTTCTCC
EY937741       <-- TGAGATCTTGCAGTAGCTGCAGATATATTTTTCCTATCTGTTTCTTCTCC
EX888240       <-- TGAGATCTTGCAGTAGCTGCAGATATATTCTTCCTATCTGTTTCTTCTCC
EX747692       <-- TGAGATCTTGCAGTAGCTGCAGATATATTTTTCCTATCTGTTTCTTCTCC
EW721128       --> ..................................................
EX892213       --> ..................................................

               1301   -   1351
UN16171        --> AGACATTGTCTCTTTTCTCATGGAAAACTTTTCCAGGAAAGAGTTCCGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716799       <-- ..................................................
FD988739       <-- ..................................................
EY915817       <-- ..................................................
FD558352       <-- ..................................................
FD569643       <-- ..................................................
EY913395       <-- AGACATTGTCTCTTTTCTCATGGAAAACTTTTCCAGGcc...........
EY937741       <-- AGACATTGTCTCTTTTCTCATGGAAAACTTTTCCAGGAAAGAGTTCCGAA
EX888240       <-- AGACATTCTCTCTTTTCTCATGGAAAACTTTTCCAGGAAAGAGTTTCGGA
EX747692       <-- AGACATTGTCTCTTTTCTCATGGAAAACTTTTCCAGGAAAGAGTTCCGAA
EW721128       --> ..................................................
EX892213       --> ..................................................

               1351   -   1401
UN16171        --> AAAAAACTTTTACAGGAAAATAAGTAAGAGAAAGAGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW716799       <-- ......................................
FD988739       <-- ......................................
EY915817       <-- ......................................
FD558352       <-- ......................................
FD569643       <-- ......................................
EY913395       <-- ......................................
EY937741       <-- AAAAAA................................
EX888240       <-- AAAAAACTTTTACAGGAAAATAAGTAAGAGAAAGAGTG
EX747692       <-- AAAAA.................................
EW721128       --> ......................................
EX892213       --> ......................................