RadishBase

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Alignment for radish unigene UN16172

               1      -     51
UN16172        --> GGGATCACAAAAACCATAACCATCTGTCGCCATGGCAGCCTCTCTCCAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD966383       <-- ..................................................
EV545079       <-- ..................................................
EW726972       <-- ..................................................
EW727265       <-- ..................................................
EY928242       <-- ..................................................
EX891043       <-- ..................................................
EX891577       <-- ..................................................
EY932533       --> GGGATCACAAAAACCATAACCATCTGTCGCCATGGCAGCCTCTCTCCAAT
FD969884       --> GGGATCACAAAAACCATAACCATCTGTCGCCATGGCAGCCTCTCTCCAAT
EW722165       --> .....gACAAAAACCATAACCATCTGTCGCCATGGCAGCTTCTCTCCAAT
EY908360       --> ....ggACAAAAACCATAACCATCTGTCGCCATGGCAGCCTCTCTCCAAT
FD947348       --> ....ggACAAAAACCATAACCATCTGTCGCCATGGCAGCTTCTCTCCAAT
EW722166       --> ..................................................
EX887421       --> ..................................................
EX755842       --> ..................................................
EV550069       --> ..................................................

               51     -    101
UN16172        --> CCGCCGCTACATTTCTCCAGTCGGCGAAAATCGCCACTGTTCCTTCTCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD966383       <-- ..................................................
EV545079       <-- ..................................................
EW726972       <-- ..................................................
EW727265       <-- ..................................................
EY928242       <-- ..................................................
EX891043       <-- ..................................................
EX891577       <-- ..................................................
EY932533       --> CCGCCGCTACATTTCTCCAGTCGGCGAAAATCGCCACTGTTCCTTCTCGT
FD969884       --> CCGCCGCTACATTTCTCCAGTCGGCGAAAATCACCACTGTTCCTTCTCGT
EW722165       --> CCGCCGCCACATTTCTCCAGTCGGCGAAGATCGCCACCGCTCCTTCTCGT
EY908360       --> CCGCCGCTACATTTCTCCAGTCGGCGAAAATCGCCACTGTTCCTTCTCGT
FD947348       --> CCGCCGCCACATTTCTCCAGTCGGCGAAGATCGCCACCGCTCCTTCTCGT
EW722166       --> ..................................................
EX887421       --> ..................................................
EX755842       --> ..................................................
EV550069       --> ..................................................

               101    -    151
UN16172        --> GGCAGTGCTCCCCTCCGGTCGACTCAGACCGTCGGCAAATCATTCGGGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD966383       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV545079       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW726972       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW727265       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY928242       <-- ..................................................  Raphanus sativus var. oleiformis
EX891043       <-- ..................................................  Raphanus sativus var. oleiformis
EX891577       <-- ..................................................  Raphanus sativus var. oleiformis
EY932533       --> GGCAGTGCTCCCCTCCGGTCGACTCAGACCGTCGGCAAATCATTCGGGCT  Raphanus sativus var. oleiformis
FD969884       --> GGCAGTGCTCCCCTCCGGTCGACTCAGACCGTCGGCAAATCATTCGGGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW722165       --> GGCAGTGCTCCCCTCCGGTCGACTCAGACCGTCGGCAAATCATTCGGGTT  Raphanus sativus cv Early Scarlet Globe
EY908360       --> GGCAGTGCTCCCCTCCGGTCGACTCAGACCGTCGGCAAATCATTCGGGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD947348       --> GGCAGTGCTCCCCTCCGGTCGACTCAGACCGTCGGCAAATCATTCGGGTT  Raphanus sativus cv Early Scarlet Globe
EW722166       --> ...................CGACTCAGACCGTCGGCAAATCATTCGGGTT  Raphanus sativus cv Early Scarlet Globe
EX887421       --> ..................................................  Raphanus sativus var. oleiformis
EX755842       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV550069       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               151    -    201
UN16172        --> AGAAACTTCCTCTGCTCGCCTCACTTGTTCCTTCCAGTCTGACTTCAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD966383       <-- ..................................................
EV545079       <-- ..................................................
EW726972       <-- ..................................................
EW727265       <-- ..................................................
EY928242       <-- ..................................................
EX891043       <-- ..................................................
EX891577       <-- ..................................................
EY932533       --> AGAAACTTCCTCTGCTCGCCTCACTCGTTCCTTCCAGTCTGACTTCAAGG
FD969884       --> AGAAACTTCCTCTGCTCGCCTCACTTGTTCCTTCCAGTCTGACTTCAAGG
EW722165       --> AGAAACTTCCTCTGCTCGCCTCACTTGTTCCTTCCAGTCTGACTTCAAGG
EY908360       --> AGAAACTTCCTCTGCTCGCCTCACTTGTTCCTTCCAGTCTGACTTCAAGG
FD947348       --> AGAAACTTCCTCTGCTCGCCTCACTTGTTCCTTCCAGTCTGACTTCAAGG
EW722166       --> AGAAACTTCCTCTGCTCGCCTCACTTGTTCCTTCCAGTCTGACTTCAAGG
EX887421       --> ..................................................
EX755842       --> ..................................................
EV550069       --> ..................................................

               201    -    251
UN16172        --> ACTTCGCCGGTAAATGCTCCGACGCTGTCAAGATCGCCGGATTCGCTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD966383       <-- ..................................................
EV545079       <-- ..................................................
EW726972       <-- ..................................................
EW727265       <-- ..................................................
EY928242       <-- ..................................................
EX891043       <-- ..................................................
EX891577       <-- ..................................................
EY932533       --> ACTTCGCCGGTAAATGCTCCGACGCTGTCAAGATCGCCGGATTCGCTCTC
FD969884       --> ACTTCGCCGGTAAATGCTCCGACGCTGTCAAGATAGCCGGATTCGCTCTC
EW722165       --> ACTTCGCCGGTAAATGCTCCGACGCTGTCAAGATCGCCGGATTCGCTCTC
EY908360       --> ACTTCGCCGGTAAATGCTCCGACGCTGTCAAGATCGCCGGATTCGCTCTC
FD947348       --> ACTTCGCCGGTAAATGCTCCGACGCTGTCAAGATCGCCGGATTCGCTC-C
EW722166       --> ACTTCGCCGGTAAATGCTCCGACGCTGTCAAGATCGCCGGATTCGCTCTC
EX887421       --> ..................................................
EX755842       --> ..................................................
EV550069       --> ..................................................

               251    -    301
UN16172        --> GCAACCTCTGCTCTCGTCGTCTCGGGAGCAAGTGCAGAAGGAGCTCCCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD966383       <-- ..................................................
EV545079       <-- ..................................................
EW726972       <-- ..................................................
EW727265       <-- ..................................................
EY928242       <-- ..................................................
EX891043       <-- ..................................................
EX891577       <-- ..................................................
EY932533       --> GCAACCTCTGCTCTCGTCGTCTCGGGAGCAAGTGCAGAAGGAGCTCCCAA
FD969884       --> GCAACCTCTGCTCTCGTCGTCTCGGGAGCAAGTGCAGAAGGAGCTCCCAA
EW722165       --> GCAACCTCTGCTCTCGTCGTCTCGGGAGCAAGTGCAGAAGGAGCTCCCAA
EY908360       --> GCAACCTCTGCTCTCGTCGTCTCGGGAGCAAGTGCAGAAGGAGCTCCCAA
FD947348       --> GCAACCTCTGCTCTCGTCGTCTCGGGAGCAAGTGCAGAAGGAGCTCCCAA
EW722166       --> GCAACCTCTGCTCTCGTCGTCTCGGGAGCAAGTGCAGAAGGAGCTCCCAA
EX887421       --> ..................................................
EX755842       --> ..................................................
EV550069       --> ..................................................

               301    -    351
UN16172        --> GAGACTGACTTACGACGAGATACAGAGCAAGACATACATGGAAGTCAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD966383       <-- ..................................................
EV545079       <-- ..................................................
EW726972       <-- ..................................................
EW727265       <-- ..................................................
EY928242       <-- ..................................................
EX891043       <-- ..................................................
EX891577       <-- ..................................................
EY932533       --> GAGACTGACTTACGACGAGATACAGAGCAAGACATACATGGAAGTCAAGG
FD969884       --> GAGACTGACTTACGACGAGATACAGAGCAAGACATACATGGAAGTCAAGG
EW722165       --> GAGACTGACTTACGACGAGATACAGAGCAAGACATACATGGAAGTCAAGG
EY908360       --> GAGACTGACTTACGACGAGATACAGAGCAAGACATACATGGAAGTCAAGG
FD947348       --> GAGACTGACTTACGACGAGATACAGGGCAAGACATACATGGAAGTCAAGG
EW722166       --> GAGACTGACTTACGACGAGATACAGAGCAAGACATACATGGAAGTCAAGG
EX887421       --> ......................................gGGAAGTCAAGG
EX755842       --> ..................................................
EV550069       --> ..................................................

               351    -    401
UN16172        --> GAACTGGAACGGCTAACCAGTGCCCAACTATTGACGGTGGCTCTGAGACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD966383       <-- ..................................................
EV545079       <-- ..................................................
EW726972       <-- ..................................................
EW727265       <-- ..................................................
EY928242       <-- ..................................................
EX891043       <-- ..................................................
EX891577       <-- ..................................................
EY932533       --> GAACTGGAACGGCTAACCAGTGCCCAACTATTGACGGTGGCTCTGAGACT
FD969884       --> GAACTGGAACGGCTAACCAGTGCCCAACTATTGACGGTGGCTCTGAGACT
EW722165       --> GAACTGGAACGGCTAACCAGTGCCCAACTATTGACGGTGGCTCTGAGACT
EY908360       --> GAACTGGAACGGCTAACCAGTGCCCAACTATTGACGGTGGCTCTGAGACT
FD947348       --> GAACTGGAACGGCTAACCAGTGCCCAACTATTGACGGTGGCTCTGAGACT
EW722166       --> GAACTGGAACGGCTAACCAGTGCCCAACTATTGACGGTGGCTCTGAGACT
EX887421       --> GAACTGGAACGGCTAACCAGTGCCCAACTATTGACGGTGGCTCTGAGACT
EX755842       --> .............gAACCAGTGCCCAACTATTGACGGTGGCTCTGAGACT
EV550069       --> ..................................................

               401    -    451
UN16172        --> TTCTCCTTCAAACCGGGAAAGTACGCTGGCAAGAAGTTCTGCTTCGAGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD966383       <-- .......TCAAACCGGGAAAGTACGCTGGCAAGAAGTTCTGCTTCGAGCC
EV545079       <-- .........AAACCGGGAAAGTACGCTGGCAAGAAGTTCTGCTTCGAGCC
EW726972       <-- ..................................................
EW727265       <-- ..................................................
EY928242       <-- ..................................................
EX891043       <-- ..................................................
EX891577       <-- ..................................................
EY932533       --> TTCTCCTTCAAACCGGGAAAGTACGCTGGCAAGAAGTTCTGCTTCGAGCC
FD969884       --> TTCTCCTTCAAACCGGGAAAGTACGCTGGCAAGAAGTTCTGCTTCGAGCC
EW722165       --> TTCTCCTTCAAACCGGGAAAGTACGCTGGCAAGAAGTTCTGCTTCGAGCC
EY908360       --> TTCTCCTTCAAACCGGGAAAGTACGCTGGCAAGAAGTTCTGCTTCGAGCC
FD947348       --> TTCTCCTTCAAACCGGGAAAGTACGCTGGCAAGAAGTTCTGCTTCGAGCC
EW722166       --> TTCTCCTTCAAACCGGGAAAGTACGCTGGCAAGAAGTTCTGCTTCGAGCC
EX887421       --> TTCTCCTTCAAACCGGGAAAGTACGCTGGCAAGAAGTTCTGCTTCGAGCC
EX755842       --> TTCTCCTTCAAACCGGGAAAGTACGCTGGCAAGAAGTTCTGCTTCGAGCC
EV550069       --> ..................................................

               451    -    501
UN16172        --> TACTTCCTTCACCGTCAAGGCTGAGAGTGTTAGCAAGAATGCTCCTCCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD966383       <-- TACTTCCTTCACCGTCAAGGCTGAGAGTGTTAGCAAGAACGCACCTCCTG
EV545079       <-- TACTTCCTTCACCGTCAAGGCTGAGAGTGTGAGCAAGAATGCTCCTCCTG
EW726972       <-- ..................................................
EW727265       <-- ..................................................
EY928242       <-- ..................................................
EX891043       <-- ..................................................
EX891577       <-- ..................................................
EY932533       --> TACTTCCTTCACCGTCAAGGCTGAGAGTGTTAGCAAGAATGCTCCTCCTG
FD969884       --> TACTTCCTTCACCGTCAAGGCTGAGAGTGTTAGCAAGAACGCACCTCCTG
EW722165       --> TACTTCCTTCACCGTCAAGGCTGAGAGTGTTAGCAAGAATGCTCCTCCTG
EY908360       --> TACTTCCTTCACCGTCAAGGCTGAGAGTGTTAGCAAGAATGCGCCTCCTG
FD947348       --> TACTTCCTTCACCGTCAAGGCTGAGAGTGTTAGCAAGAATGCTCCTCCTG
EW722166       --> TACTTCCTTCACCGTCAAGGCTGAGAGTGTTAGCAAGAATGCTCCTCCTG
EX887421       --> TACTTCCTTCACCGTCAAGGCTGAGAGTGTTAGCAAGAATGCTCCTCCTG
EX755842       --> TACTTCCTTCACCGTCAAGGCTGAGAGTGTTAGCAAGAACACACCTCCTG
EV550069       --> ..................................................

               501    -    551
UN16172        --> ACTTCCAGAACACCAAGCTCATGACCCGTCTCACCTACACTCTCGACGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD966383       <-- ACTTCCAGAACACCAAGCTCATGACCCGTCTCACCTACACTCTCGACGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV545079       <-- ACTTCCAGAACACCAAGCTCATGACCCGTCTCACCTACACTCTCGACGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW726972       <-- ................................................aa  Raphanus sativus cv Early Scarlet Globe
EW727265       <-- ................................................aa  Raphanus sativus cv Early Scarlet Globe
EY928242       <-- ..................................................  Raphanus sativus var. oleiformis
EX891043       <-- ..................................................  Raphanus sativus var. oleiformis
EX891577       <-- ..................................................  Raphanus sativus var. oleiformis
EY932533       --> ACTTCCAGAACACCAAGCTCATGACCCATCTCACCTACACTCTCGACGAG  Raphanus sativus var. oleiformis
FD969884       --> ACTTCCAGAACACCAAGCTCATGACCCGTCTCACCTACACTCTCGACGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EW722165       --> ACTTCCAGAACACCAAGCTCATGACCCGTCTCACCTACACTCTCGACGAA  Raphanus sativus cv Early Scarlet Globe
EY908360       --> ACTTCCAAAACACCAAGCTCATGACCCGTCTCACCTACACTCTCGACGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD947348       --> ACTTCCAGAACACCAAGCTCATGACCCGTCTCACCTACACTCTCGACGAA  Raphanus sativus cv Early Scarlet Globe
EW722166       --> ACTTCCAGAACACCAAGCTCATGACCCGTCTCACCTACACTCTCGACGAA  Raphanus sativus cv Early Scarlet Globe
EX887421       --> ACTTCCAGAACACCAAGCTCATGACCCGTCTCACCTACACTCTCGACGAG  Raphanus sativus var. oleiformis
EX755842       --> ACTTCCAGAACACCAAGCTCATGACCCGTCTCACCTACACTCTCGACGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV550069       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               551    -    601
UN16172        --> ATCGAAGGCCCCTTCGAGGTTTCTTCTGACGGAAGTGTGAACTTCAAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD966383       <-- ATCGAAGGCCCCTTTGAGGTTTCTTCTGACGGAAGTGTGAACTTCAAGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV545079       <-- ATCGAAGGCCCCTTCGAGGTTTCTTCTGACGGAAGTGTGAACTTCAAGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW726972       <-- ATCGAAGGCCCCTTCGAGGTTTCTTCTGATGGAAGCGTGAACTTCAAGGA  Raphanus sativus cv Early Scarlet Globe
EW727265       <-- ATCGAAGGCCCCTTCGAGGTTTCTTCTGATGGAAGCGTGAACTTCAAGGA  Raphanus sativus cv Early Scarlet Globe
EY928242       <-- ATCGAAGGCCCCTTTGAGGTTTCTTCTGACGGAAGTGTGAACTTCAAGGA  Raphanus sativus var. oleiformis
EX891043       <-- ...........................GACGGAAGTGTGAACTTCAAGGA  Raphanus sativus var. oleiformis
EX891577       <-- ..................................................  Raphanus sativus var. oleiformis
EY932533       --> ATCGAAGGCCCCTTTGAGGTTTCTTCTGACGGAAGTGTGAACTTCAAGGA  Raphanus sativus var. oleiformis
FD969884       --> ATCGAAGGCCCCTTTGAGGTTTCTTCTGACGGAAGTGTGAACTTCAAGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EW722165       --> ATCGAAGGCCCCTTCGAGGTTTCTTCTGATGGAAGCGTGAACTT......  Raphanus sativus cv Early Scarlet Globe
EY908360       --> ATCGAAGGCCCCTTCGAGGTTTCTTCTGACGGAAGCGTGAACTTCAAGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD947348       --> ATCGAAGGCCCCTTCGAGGTTTCTTCTGATGGAAGCGTGAACTTCAAGGA  Raphanus sativus cv Early Scarlet Globe
EW722166       --> ATCGAAGGCCCCTTCGAGGTTTCTTCTGATGGAAGCGTGAACTTCAAGGA  Raphanus sativus cv Early Scarlet Globe
EX887421       --> ATCGAAGGCCCCTTTGAGGTTTCTTCTGACGGAAGTGTGAACTTCAAGGA  Raphanus sativus var. oleiformis
EX755842       --> ATCGAAGGCCCCTTTGAGGTTTCTTCTGACGGAAGTGTGAACTTCAAGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV550069       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               601    -    651
UN16172        --> AGAAGACGGCATCGACTACGCTGCAGTCACTGTCCAGCTTCCAGG-AGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD966383       <-- AGAAGACGGCATCGACTACGCTGCAGTCACTGTCCAGCTTCCAGG-AGGC
EV545079       <-- AGAAGACGGCATCGACTACGCTGCAGTCACTGTCCAGCTTCCAGG-AGGC
EW726972       <-- AGAAGACGGAATCGATTACGCTGCAGTCACTGTCCAGCTTCCAGG-AGGC
EW727265       <-- AGAAGACGGAATCGATTACGCTGCAGTCACTGTCCAGCTTCCAGG-AGGC
EY928242       <-- AGAAGACGGCATCGATTACGCTGCAGTCACTGCCCAGCTTCCAGG-AGGC
EX891043       <-- AGAAGACGGCATCGACTACGCTGCAGTCACTGTCCAGCTTCCAGGGAGGC
EX891577       <-- ..................................................
EY932533       --> AGAAGACG..........................................
FD969884       --> AGAAGACGGCATCGACTACGCTGCAGTCACTGTCCAGCTTCCAGG-AGGC
EW722165       --> ..................................................
EY908360       --> AG................................................
FD947348       --> AGAAG.............................................
EW722166       --> AGAAGACGGAATCGACTACGCTGCAGTCACTGTCCAGCTTCCAGG-AGGC
EX887421       --> AGAAGACGGCATCGACTACGCTGCAGTCACTGTCCAGCTTCCAGG-AGGC
EX755842       --> AGAAGACGGCATCGACTACGCTGCAGTCACTGTCCAGCTTCCAGG-AGGC
EV550069       --> ..................................................

               651    -    701
UN16172        --> GAGCGTGTGCCCTTCCTCTTCACAGTCAAGCAGCTTGACGCCTCAGGCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD966383       <-- GAGCGTGTGCCCTTCCTCTTCACAGTCAAGCAGCTTGACGCCTCAGGCAA
EV545079       <-- GAGCGTGTGCCCTTCCTCTTCACAGTCAAGCAGCTTGACGCCTCAGGCAA
EW726972       <-- GAGCGTGTGCCATTCCTCTTCACAGTCAAGCAGCTTGACGCCTCTGGCAA
EW727265       <-- GAGCGTGTGCCATTCCTCTTCACAGTCAAGCAGCTTGACGCCTCTGGCAA
EY928242       <-- GAGCGTGTGCCCTTCCTCTTCACAGTCAAGCAGCTTGACGCTTCAGGCAA
EX891043       <-- GAGCGTGTGCCCTTCCTCTTCACAGTCAAGCAGCTTGACGCCTCAGGCAA
EX891577       <-- ..................................................
EY932533       --> ..................................................
FD969884       --> GAGCGTGTGCCCTTCCTCTTCACAGTCAAGCAGCTTGACGCC........
EW722165       --> ..................................................
EY908360       --> ..................................................
FD947348       --> ..................................................
EW722166       --> GAGCGTGTGCCATTCCTCTTCACAGTCAAGCAGCTTGACGCCTCTGGCAA
EX887421       --> GAGCGTGTGCCCTTCCTCTTCACAGTCAAGCAGCTTGACGCCTCAGGCAA
EX755842       --> GAGCTTGTGCCCTTCCTCTTCACAGTCAAGCAGTTTGACGCCTCAGGCAA
EV550069       --> ..................................................

               701    -    751
UN16172        --> ACCAGACAGCTTCACTGGCAAATTCTTGGTCCCTTCATACCGTGGCTCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD966383       <-- ACCAGACAGCTTCACTGGCAAATTCTTGGTCCCTTCATACCGTGGCTCCT
EV545079       <-- ACCAGACAGCTTCACTGGCAAATTCTTGGTCCCTTCATACCGTGGCTCCT
EW726972       <-- ACCAGACAACTTCACTGGCAAATTTTTAGTCCCTTCATACCGTGGCTCCT
EW727265       <-- ACCAGACAACTTCACTGGCAAATTCTTAGTCCCTTCATACCGTGGCTCCT
EY928242       <-- ACCAGACAGCTTCACTGGCAAATTCTTGGTCCCTTCATACCGTGGCTCCT
EX891043       <-- ACCAGACAGCTTCACTGGCAAATTCTTGGTCCCTTCATACCGTGGCTCCT
EX891577       <-- .................GCAAATTCTTGGTCCCTTCATACCGTGGCTCCT
EY932533       --> ..................................................
FD969884       --> ..................................................
EW722165       --> ..................................................
EY908360       --> ..................................................
FD947348       --> ..................................................
EW722166       --> ACCAGACAACTTCACTGGCAAATTCTTAGTCCCTTCATACCGTGGCTCCT
EX887421       --> ACCAGACAGCTTCACTGGCAAATTCTTGGTCCCTTCATACCGTGGCTCCT
EX755842       --> ACCAGACAGCTTCACTGGCAAATTCTTGGTCCCTTCATACCGTGGCTCCT
EV550069       --> ..................................................

               751    -    801
UN16172        --> CCTTCTTGGACCCAAAGGGTCGTGGTGGATCCACAGGATATGACAACGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD966383       <-- CCTTCTTGGACCCAAAGGGTCGTGGTGGATCCACAGGATATGACAACGCA
EV545079       <-- CCTTCTTGGACCCAAAGGGTCGTGGTGGATCCACAGGATATGACAACGCA
EW726972       <-- CCTTCTTGGACCCAAAGGGTCGTGGTGGATCCACAGGATATGACAACGCA
EW727265       <-- CCTTCTTGGACCCAAAGGGTCGTGGTGGATCCACAGGATATGACAACGCA
EY928242       <-- CCTTCTTGGACCCAAAGGGTCGTGGTGGATCCACAGGATATGACAACGCA
EX891043       <-- CCTTCTTGGACCCAAAGGGTCGTGGTGGTTCCACAGGATATGACAACGCA
EX891577       <-- CCTTCTTGGACCCAAAGGGTCGTGGTGGTTCCACAGGATATGACAACGCA
EY932533       --> ..................................................
FD969884       --> ..................................................
EW722165       --> ..................................................
EY908360       --> ..................................................
FD947348       --> ..................................................
EW722166       --> CCTTCTTG..........................................
EX887421       --> CCTTCTTGGACCCAAAGGGTCGTGGTGGATCCACAGGATATGACAACGCA
EX755842       --> CCTTCTTGGACCCAAAGGGTCGTGGTGGATCCACAGGATATGACAACGCA
EV550069       --> ..................................................

               801    -    851
UN16172        --> GTTGCATTGCCAGCTGGAGGCAGAGGAGACGAGGAGGAGCTTTCAAAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD966383       <-- GTTGCGTTGCCAGCTGGAGGGAGAGGAGACGAAGAGGAGCTTTCAAAGGA
EV545079       <-- GTTGCATTACCAGCTGGAGGGAGAGGAGACGAAGAGGAGCTTTCAAAGGA
EW726972       <-- GTTGCATTGCCAGCTGGAGGCAGAGGAGACGAGGAGGAGCTTTCAAAGGA
EW727265       <-- GTTGCATTGCCAGCTGGAGGCAGAGGAGACGAGGAGGAGCTTTCAAAGGA
EY928242       <-- GTTGCATTGCCAGCTGGAGGCAGAGGAGACGAGGAGGAGCTTTCAAAGGA
EX891043       <-- GTTGCATTGCCAGCTGGAGGCAGAGGAGACGAGGAGGAGCTTTCAAAGGA
EX891577       <-- GTTGCATTGCCAGCTGGAGGCAGAGGAGACGAGGAGGAGCTTTCAAAGGA
EY932533       --> ..................................................
FD969884       --> ..................................................
EW722165       --> ..................................................
EY908360       --> ..................................................
FD947348       --> ..................................................
EW722166       --> ..................................................
EX887421       --> GTTGCATTGCCAGCTGGAGGCAGAGGAGACGAGGAGGAGCTTTCAAAGGA
EX755842       --> GTTGCGTTGCCAGCTGGAGGGAGGGGAGACGAAGAGGAGCTTTCAAAGGA
EV550069       --> ..................................................

               851    -    901
UN16172        --> GAACGTCAAGAACACGGCAGCTTCAGTGGGACAGATCACTTTGAAAGTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD966383       <-- GAACGTCAAGAACACATCAGCTTCAGTGGGAGAGATCACTTTGAAAGTGA
EV545079       <-- GAACGTCAAGAACACAGCAGCTTCAGTGGGAGAGATCACTTTGAAAGTGA
EW726972       <-- GAACGTGAAGAACACGGCAGCTTCAGTGGGACAGATCACTTTGAAAGTGA
EW727265       <-- GAACGTGAAGAACACGGCAGCTTCAGTGGGACAGATCACTTTGAAAGTGA
EY928242       <-- GAACGTCAAGAACACGGCAGCTTCAGTGGGACAGATCACTTTGAAAGTGA
EX891043       <-- GAACGTCAAGAACACGGCAGCTTCAGTGGGACAGATCACTTTGAAAGTGA
EX891577       <-- GAACGTCAAGAACACGGCAGCTTCAGTGGGACAGATCGCTTTGAAAGTGA
EY932533       --> ..................................................
FD969884       --> ..................................................
EW722165       --> ..................................................
EY908360       --> ..................................................
FD947348       --> ..................................................
EW722166       --> ..................................................
EX887421       --> GAACGTCAAGAACACGGCAGCTTCAGTGGGACAGATCGCTTTGAAAGTGA
EX755842       --> GAACGTCAAGAACACAGCAGCTTCAGTGGGAGAGATCACTTTGAAAGTGA
EV550069       --> ..................................................

               901    -    951
UN16172        --> CAAAGAGCAAACCGGAAACTGGAGAAGTGATCGGAGTGTTTGAGAGTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD966383       <-- CAAAGAGCAAACCGGAAACTGGTGAGGTGATCGGAGTGTTTGAGAGTCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV545079       <-- CAAAGAGCAAACCGGAAACTGGTGAAGTGATCGGAGTGTTTGAGAGTCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW726972       <-- CAAAGAGCAAACCGGAAACTGGAGAAGTGATCGGAGTGTTTGAGAGTCTT  Raphanus sativus cv Early Scarlet Globe
EW727265       <-- CAAAGAGCAAACCGGAAACTGGAGAAGTGATCGGAGTGTTTGAGAGTCTT  Raphanus sativus cv Early Scarlet Globe
EY928242       <-- CAAAGAGCAAACCGGAAACTGGAGAAGTGATCGGAGTGTTTGAGAGTCTT  Raphanus sativus var. oleiformis
EX891043       <-- CAAAGAGCAAACCGGAAACTGGAGAAGTGATCGGAGTGTTTGAGAGTCTT  Raphanus sativus var. oleiformis
EX891577       <-- CAAAGAGCAAACCGGAAACTGGAGAAGTGTTCGGAGTGTTTGAGAGTCTT  Raphanus sativus var. oleiformis
EY932533       --> ..................................................  Raphanus sativus var. oleiformis
FD969884       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW722165       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY908360       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD947348       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EW722166       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX887421       --> CAAAGAGCAAACCGGAAACTGGAGAAGTGATCGGAGTGTTTGAGAGTCTT  Raphanus sativus var. oleiformis
EX755842       --> CAAAGAGCAAACCGGAAACTGGTGAGGTGATCGGAGTGTTTGAGAGTCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV550069       --> .......CAAACCGGAAACTGGTGAAGTGATCGGAGTGTTTGAGAGTCTT  Raphanus raphanistrum subsp. raphanistrum (NY)

               951    -   1001
UN16172        --> CAGCCGTCGGATACTGACTTGGGTGCCAAGGTACCAAAGGATGTTAAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD966383       <-- CAGCCGTCGGATACTGACTTGGGTGCCAAGGTACCAAAGGATGTTAAGAT
EV545079       <-- CAGCCGTCGGATACTGACTTGGGTGCCAAGGTACCAAAGGATGTTAAGAT
EW726972       <-- CAGCCGTCGGATACTGACTTGGGTGCCAAGGTACCAAAGGATGTTAAGAT
EW727265       <-- CAGCCGTCGGATACTGACTTGGGTGCCAAGGTACCAAAGGATGTTAAGAT
EY928242       <-- CAGCCGTCGGATACTGACTTGGGTGCCAAGGTACCAAAGGATGTTAAGAT
EX891043       <-- CAGCCGTCGGATACTGACTTGGGTGCCAAGGTACCAAAGGATGTT.....
EX891577       <-- CAGCCGTCGGATACTGACTTGGGTGCCAAGGTACCAAAGGATGTT.....
EY932533       --> ..................................................
FD969884       --> ..................................................
EW722165       --> ..................................................
EY908360       --> ..................................................
FD947348       --> ..................................................
EW722166       --> ..................................................
EX887421       --> CAGCCGTCGGATACTGACTTGGGTGCCAAGGTACCAAAG-ATGTTAAGAT
EX755842       --> CAGCCGTCGGATACTGACTTGGGTGCCAAGGTACCAAAG-ATGTTAAGAT
EV550069       --> CAGCCGTCGGATACTGACTTGGGTGCCAAGGTACCAAAGGATGTTAAGAT

               1001   -   1051
UN16172        --> CCAAGGGGTGTGGTATGGTCAACTTGAGTGATCATGTTATCTATATCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD966383       <-- CCAAGGGGTGTGGTATGGTCAACTTGAGTGATCATGTTATCTATATCAAA
EV545079       <-- CCAAGGGGTGTGGTATGGTCAACTTGAGTGATCATGTTATCTATATCAAA
EW726972       <-- CCAAGGGGTGTGGTATGGTCAACTTGAGTGATCATGTTATCTATATTAAA
EW727265       <-- CCAAGGGGTGTGGTATGGTCAACTTGAGTGATCATGTTATCTATATTAAA
EY928242       <-- CCAAGGGGTGTGGTATGGTCAACTTGAGCGATCATGTTATCTATATCAAA
EX891043       <-- ..................................................
EX891577       <-- ..................................................
EY932533       --> ..................................................
FD969884       --> ..................................................
EW722165       --> ..................................................
EY908360       --> ..................................................
FD947348       --> ..................................................
EW722166       --> ..................................................
EX887421       --> CCAAGGGGTGTGGTATGGTCAACTTGAGTGATCATGTTATCTATATCAAA
EX755842       --> C.................................................
EV550069       --> CCAAGGGGTGTGGTATGGTCAACTTGAGTGATCATGTTATCTATATCAAA

               1051   -   1101
UN16172        --> ACATCTTCTCTGTTAAATTGTATTCGATGATTATGAGAACATCTTTTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD966383       <-- ACATCTTCTCTCTTAAATTGTATTCGATGATTATGAGAACATCTTTTGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV545079       <-- ACATCTTCTCTCTTAAATTGTATTCGATGATTATGAGAACATCTTTTGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW726972       <-- ACTTCTTCTCTGTTAAATTGTATTCGATGATGATGAGAACATCTTTTGAT  Raphanus sativus cv Early Scarlet Globe
EW727265       <-- ACATCTTCTCTGTTAAATTGTATTCGATGATGATGAGAACATCTTTTGAT  Raphanus sativus cv Early Scarlet Globe
EY928242       <-- ACATCTTTTCTGTTAAATTGTATTCGATGATAATTAGAACATCTTTTGAT  Raphanus sativus var. oleiformis
EX891043       <-- ..................................................  Raphanus sativus var. oleiformis
EX891577       <-- ..................................................  Raphanus sativus var. oleiformis
EY932533       --> ..................................................  Raphanus sativus var. oleiformis
FD969884       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW722165       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY908360       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD947348       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EW722166       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX887421       --> -CATCTTCTCTGTTAA-TTGTATTCGATGAT-ATTAG-ACATCTTT-GAT  Raphanus sativus var. oleiformis
EX755842       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV550069       --> ACATCTTCTCTCTTAAATTGTATTCGATGATTATGAGAACATCTTTTGAT  Raphanus raphanistrum subsp. raphanistrum (NY)

               1101   -   1151
UN16172        --> GCTTTCTATGTTTTCTCTCTTATAAAAATGCAATTCCACCTTATAACGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD966383       <-- GCTTTCTATGTTTTCTCTCTTATAAAAATGCAATTCCTCCT.........
EV545079       <-- GCTTTCTATGTTTTCTCTCTTATAAAAATGCAATTCCACCTTATAACGAA
EW726972       <-- GCTTTCTATGTTTTCTCTCTTAT...........................
EW727265       <-- GCTTTCTATGTTTTCTCTCTTATAAAAATGCAATTCCtccc.........
EY928242       <-- GCTTTCTATGTTTTCTCTCTTATAAA........................
EX891043       <-- ..................................................
EX891577       <-- ..................................................
EY932533       --> ..................................................
FD969884       --> ..................................................
EW722165       --> ..................................................
EY908360       --> ..................................................
FD947348       --> ..................................................
EW722166       --> ..................................................
EX887421       --> GCTTTCTATGTTTctttct...............................
EX755842       --> ..................................................
EV550069       --> GCTTTCTATGTTTTCTCTCTTATAAAAATGCAATTCCACCTT........

               1151   -   1201
UN16172        --> ATGTATGGTATCAAACC
                   ~~~~~~~~~~~~~~~~~
FD966383       <-- .................
EV545079       <-- ATGTATGGTATCAAACC
EW726972       <-- .................
EW727265       <-- .................
EY928242       <-- .................
EX891043       <-- .................
EX891577       <-- .................
EY932533       --> .................
FD969884       --> .................
EW722165       --> .................
EY908360       --> .................
FD947348       --> .................
EW722166       --> .................
EX887421       --> .................
EX755842       --> .................
EV550069       --> .................