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Alignment for radish unigene UN16178

               1      -     51
UN16178        --> GGCCAAACCCAAGAAGAAGCTAACTACGAAACTTCTCAGTTTCACTTCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD960819       <-- ..................................................
FD975416       <-- ..................................................
FD530251       <-- ..................................................
FD959211       <-- ..................................................
EX892280       <-- ..................................................
EW720405       <-- ..................................................
FD958739       <-- ..................................................
FD566144       <-- ..................................................
EW716113       --> GGCCAAACCCAAGAAGAAGCTAACTACGAAACTTCTCAGTCTCACTTCCT
FD962724       --> .......................gTACGAAACTTCTCAGTTTCACTTCCT
EX888330       --> ..................................................
EV550873       --> ..................................................
FD964957       --> ..................................................
FD962128       --> ..................................................
FD562179       --> ..................................................

               51     -    101
UN16178        --> TCTTCTATATAATCTCCCCCAATCTCAAATCAAAAAGTCCACAACACAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD960819       <-- ..................................................
FD975416       <-- ..................................................
FD530251       <-- ..................................................
FD959211       <-- ..................................................
EX892280       <-- ..................................................
EW720405       <-- ..................................................
FD958739       <-- ..................................................
FD566144       <-- ..................................................
EW716113       --> TCTTCTATATAATCTCCCCCAATCTCAAATCAAAAAGTCCACAACACAAC
FD962724       --> TCTTCTATATAATCTCCCCCAATCTCAAATCAAAAACTCCACAACACAAC
EX888330       --> ....................................ggCCACAACACAAC
EV550873       --> ......................................ggACAACACAAC
FD964957       --> ......................................ggACAACACAAC
FD962128       --> ..................................................
FD562179       --> ..................................................

               101    -    151
UN16178        --> ACAATCAAAACCACAAACCAACGACTCCAAAGTTTCATTTATGGCTTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD960819       <-- ..................................................
FD975416       <-- ..................................................
FD530251       <-- ..................................................
FD959211       <-- ..................................................
EX892280       <-- ..................................................
EW720405       <-- ..................................................
FD958739       <-- ..................................................
FD566144       <-- ..................................................
EW716113       --> ACAATCAAAACCACAAACCAACGACTCCAAAGTTTCATTTATGGCTTCTT
FD962724       --> ACAATCAAAACCACAAACCAACGACTCCAAAGTTTCATTTATGGCTTTTT
EX888330       --> ACAATCAAAACCACAAACCAACGACTCCAAAGTTTCATTCATGGCTTCTT
EV550873       --> ACAATCAAAACCACAAACCAACGACTCCAAAGTTTCATTTATGGCTTTTT
FD964957       --> ACAATCAAAACCACAAACCAACGACTCCAAAGTTTCATTTATGGCTTTTT
FD962128       --> ..................................................
FD562179       --> ..................................................

               151    -    201
UN16178        --> CACAAGACCAATCAGCTTTGGACCTCATAACTCAACACCTCCTTACCGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD960819       <-- ..................................................
FD975416       <-- ..................................................
FD530251       <-- ..................................................
FD959211       <-- ..................................................
EX892280       <-- ..................................................
EW720405       <-- ..................................................
FD958739       <-- ..................................................
FD566144       <-- ..................................................
EW716113       --> CACAAGACCAATCAGCTTTGGACCTCATAACTCAACACCTCCTTACCGAT
FD962724       --> CACAAGACCAATCAGCTTTGGACCTCATAACTCAACACCTCCTTACCGAT
EX888330       --> CACAAGACCAATCAGCTTTGGACCTCATAACTCAACACCTCCTTACCGAT
EV550873       --> CACAAGACCAATCAGCTTTGGACCTCATAACTCAACACCTCCTTACCGAT
FD964957       --> CACAAGACCAATCAGCTTTGGACCTCATAACTCAACACCTCCTTACCGAT
FD962128       --> ..................................................
FD562179       --> ..................................................

               201    -    251
UN16178        --> TTCCCTTCCTTAGAGACTTTCGTTTCTAGCATCCATCAGAGCACCACCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD960819       <-- .....cttCTTAGAGACTTTCGTTTCTAGCATCCATCAGAGCACCACCTC
FD975416       <-- ..................................................
FD530251       <-- ..................................................
FD959211       <-- ..................................................
EX892280       <-- ..................................................
EW720405       <-- ..................................................
FD958739       <-- ..................................................
FD566144       <-- ..................................................
EW716113       --> TCCCCTTCCTTGGAGACTTTCGTTTCTAGCATCCATCAGAGCACCACCTC
FD962724       --> TTCCCTTCCTTAGAGACTTTCGTTTCTAGCATCCATCAGAGCACCACCTC
EX888330       --> TCCCCTTCCTTGGAGACTTTCGTTTCTAGCATCCATCAGAGCACCACCTC
EV550873       --> TTCCCTTCCTTAGAGACTTTCGTTTCTAGCATCCATCAGAGCACCACCTC
FD964957       --> TTCCCTTCCTTAGAGACTTTCGTTTCTAGCATCCATCAGAGCACCACCTC
FD962128       --> ..................................................
FD562179       --> ..................................................

               251    -    301
UN16178        --> CACTCTAAGCCAACGCAAGCCATCTCTTGCCACCATTTCAGTTCCTACTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD960819       <-- CACTCTAAGCCAACGCAAGCCATCTCTTGCCACCATTTCAGTTCCTACTA
FD975416       <-- ..CTCTAAGCCAACGCAAGCCATCTCTTGCCACCATTTCAGTTCCTACTA
FD530251       <-- .....TAAGCCAACGCAAGCCATCTCTTGCCACCATTTCAGTTCCTACTA
FD959211       <-- ............ACGCAAGCCATCTCTTGCCACCATTTCAGTTCCTACTA
EX892280       <-- ..................................................
EW720405       <-- ..................................................
FD958739       <-- ..................................................
FD566144       <-- ..................................................
EW716113       --> CACTCTTAGCCAACGCAAGCCATCTCTTGCCACCATTTTAGTTCCTACTA
FD962724       --> CACTCTAAGCCAACGCAAGCCATCTCTTGCCACCATTTCAGTTCCTACTA
EX888330       --> CACTCTTAGCCAACGCAAGCCATCTCTTGCCACCATTTTAGTTCCTACTA
EV550873       --> CACTCTAAGCCAACGCAAGCCATCTCTTGCCACCATTTCAGTTCCTACTA
FD964957       --> CACTCTAAGCCAACGCAAGCCATCTCTTGCCACCATTTCAGTTCCTACTA
FD962128       --> ..............................................ACTA
FD562179       --> ..................................................

               301    -    351
UN16178        --> CTA--GCAGCGGTGGTTCAAGAGGATGATCATAGGCATTACAGAGGCGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD960819       <-- CTACTGCAGCGGTGGTTCAAGAGGATGATCATAGGCATTACAGAGGCGTG  Raphanus raphanistrum subsp. maritimus
FD975416       <-- CTACTGCAGTGGTGGTTCAAGAGGATGATCATAGGCATTACAGAGGCGTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD530251       <-- CTACTGCAGCGGTGGTTCAAGAGGATGATCATAGGCATTACAGAGGCGTG  Raphanus raphanistrum subsp. maritimus
FD959211       <-- CT---GCAGCGGTGGTTCAAGAGGATGATCATAGGCATTACAGAGGCGTG  Raphanus raphanistrum subsp. maritimus
EX892280       <-- ............TGGTTAAAGAGGATGATCATAGGCATTACAGAGGCGTG  Raphanus sativus var. oleiformis
EW720405       <-- ..................................................  Raphanus sativus var. oleiformis
FD958739       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD566144       <-- ..................................................  Raphanus sativus var. oleiformis
EW716113       --> CT---GCACCGGTGGTTAAAGAGGATGATCATAGGCATTACAGAGGCGTG  Raphanus sativus var. oleiformis
FD962724       --> CT---GCAGCGGTGGTTCAAGAGGATGATCATAGGCATTACAGAGGCGTG  Raphanus raphanistrum subsp. maritimus
EX888330       --> CT---GCACCGGTGGTTAAAGAGGATGATCATAGGCATTACAGAGGCGTG  Raphanus sativus var. oleiformis
EV550873       --> CTACTGCAGCGGTGGTTCAAGAGGATGATCATAGGCATTACAGAGGCGTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD964957       --> CTACTGCAGCGGTGGTTCAAGAGGATGATCATAGGCATTACAGAGGCGTG  Raphanus raphanistrum subsp. maritimus
FD962128       --> CT---GCAGCGGTGGTTCAAGAGGATGATCATAGGCATTACAGAGGCGTG  Raphanus raphanistrum subsp. maritimus
FD562179       --> ..................................................  Raphanus sativus var. oleiformis

               351    -    401
UN16178        --> AGGCGTAGACCGTGGGGTAAGTACGCGGCTGAGATCAGAGACCCAAACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD960819       <-- AGGCGTAGACCGTGGGGTAAGTACGCGGCTGAGATCAGAGACCCAAACAA
FD975416       <-- AGGCGTAGACCGTGGGGTAAGTACGCGGCTGAGATCAGAGACCCAAACAA
FD530251       <-- AGGCGTAGACCGTGGGGTAAGTACGCGGCTGAGATCAGAGACCCAAACAA
FD959211       <-- AGGCGTAGACCGTGGGGTAAGTACGCGGCTGAGATCAGAGACCCAAACAA
EX892280       <-- AGGCGTAGACCGTGGGGTAAGTACGCGGCTGAGATCAGAGACCCAAACAA
EW720405       <-- ....................................AGAGACCCAAACAA
FD958739       <-- ..................................................
FD566144       <-- ..................................................
EW716113       --> AGGCGTAGACCGTGGGGTAAGTACGCGGCTGAGATCAGAGACCCAAACAA
FD962724       --> AGGCGTAGACCGTGGGGTAAGTACGCGGCTGAGATCAGAGACCCAAACAA
EX888330       --> AGGCGTAGACCGTGGGGTAAGTACGCGGCTGAGATCAGAGACCCAAACAA
EV550873       --> AGGCGTAGACCGTGGGGTAAGTACGCGGCTGAGATCAGAGACCCAAACAA
FD964957       --> AGGCGTAGACCGTGGGGTAAGTACGCGGCTGAGATCAGAGACCCAAACAA
FD962128       --> AGGCGTAGACCGTGGGGTAAGTACGCGGCTGAGATCAGAGACCCAAACAA
FD562179       --> ..................................................

               401    -    451
UN16178        --> GAAAGGTGTTCGTGTCTGGCTAGGTACTTTTGACACGGCCGTGGAAGCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD960819       <-- GAAAGGTGTTCGTGTCTGGCTAGGTACTTTTGACACGGCCGTGGAAGCTG
FD975416       <-- GAAAGGTGTTCGTGTCTGGCTAGGTACTTTTGACACGGCCGTGGAAGCTG
FD530251       <-- GAAAGGTGTTCGTGTCTGGCTAGGTACTTTTGACACGGCCGTGGAAGCTG
FD959211       <-- GAAAGGTGTTCGTGTCTGGCTAGGTACTTTTGACACGGCCGTGGAAGCTG
EX892280       <-- GAAAGGTGTTCGTGTCTGGCTAGGTACTTTTGACACGGCCGTGGAAGCTG
EW720405       <-- GAAAGGTGTTCGTGTCTGGCTAGGTACTTTTGACACGGCCGTGGAAGCTG
FD958739       <-- ..............TCTGGCTAGGTACTTTTGACACGGCCGTGGAAGCTG
FD566144       <-- ..................................................
EW716113       --> GAAAGGTGTTCGTGTCTGGCTAGGTACTTTTGACACGGCCGTGGAAGCTG
FD962724       --> GAAAGGTGTTCGTGTCTGGCTAGGTACTTTTGACACGGCCGTGGAAGCTG
EX888330       --> GAAAGGTGTTCGTGTCTGGCTAGGTACTTTTGACACGGCCGTGGAAGCTG
EV550873       --> GAAAGGT--TCGTGTCTGGCTAGGTACTTTTGACACGGCCGTGGAAGCTG
FD964957       --> GAAAGGTGTTCGTGTCTGGCTAGGTACTTTTGACACGGCCGTGGAAGCTG
FD962128       --> GAAAGGTGTTCGTGTCTGGCTAGGTACTTTTGACACGGCCGTGGAAGCTG
FD562179       --> ..................................................

               451    -    501
UN16178        --> CAAGAGGTTACGATAGAGCTGCTTTTAAACTAAGAGGAAGCAAA-GCCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD960819       <-- CAAGAGGTTACGATAGAGCTGCTTTTAAACTAAGAGGAAGCAAA-GCCAT  Raphanus raphanistrum subsp. maritimus
FD975416       <-- CAAGAGGTTACGATAGAGCTGCTTTTAAACTAAGAGGAAGCAAA-GCCAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD530251       <-- CAAGAGGTTACGATAGAGCTGCTTTTAAACTAAGAGGAAGCAAA-GCCAT  Raphanus raphanistrum subsp. maritimus
FD959211       <-- CAAGAGGTTACGATAGAGCTGCTTTTAAACTAAGAGGAAGCAAA-GCCAT  Raphanus raphanistrum subsp. maritimus
EX892280       <-- CAAGAGGTTACGACAGAGCTGCTTTTAAACTAAGAGGAAGCAAA-GCCAT  Raphanus sativus var. oleiformis
EW720405       <-- CAAGAGGTTACGACAGAGCTGCTTTTAAACTAAGAGGAAGCAAAAGCCAT  Raphanus sativus var. oleiformis
FD958739       <-- CAAGAGGTTACGATAGAGCTGCTTTTAAACTAAGAGGAAGCAAA-GCCAT  Raphanus raphanistrum subsp. maritimus
FD566144       <-- ..................................................  Raphanus sativus var. oleiformis
EW716113       --> CAAGAGGTTACGACAGAGCTGCTTTTAAACTAAGAGGAAGCAAA-GCCAT  Raphanus sativus var. oleiformis
FD962724       --> CAAGAGGTTACGATAGAGCTGCTTTTAAACTAAGAGGAAGCAAA-GCCAT  Raphanus raphanistrum subsp. maritimus
EX888330       --> CAAGAGGTTACGACAGAGCTGCTTTTAAACTAAGAGGAAGCAAA-GCCAT  Raphanus sativus var. oleiformis
EV550873       --> CAAGAGGTTACGATAGAGCTGCTTTTAAACTAAGAGGAAGCAAA-GCCAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD964957       --> CAAGAGGTTACGATAGAGCTGCTTTTAAACTAAGAGGAAGCAAA-GCCAT  Raphanus raphanistrum subsp. maritimus
FD962128       --> CAAGAGGTTACGATAGAGCTGCTTTTAAACTAAGAGGAAGCAAA-GCCAT  Raphanus raphanistrum subsp. maritimus
FD562179       --> ..................................................  Raphanus sativus var. oleiformis

               501    -    551
UN16178        --> TCTTAACTTCCCACTCGAAGCAGGTAAGCACGAGGACTCTGGAGATGACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD960819       <-- TTTTAACTTCCCACTCGAAGCAGGTAAGCACGAGGACTCTGGAGATG---  Raphanus raphanistrum subsp. maritimus
FD975416       <-- TCTTAACTTCCCACTCGAAGCAGGTAAGCACGAGGACTCTGGAGATG---  Raphanus raphanistrum subsp. raphanistrum (NY)
FD530251       <-- TCTTAACTTCCCACTCGAAGCAGGTAAGCACGAGGACTCTGGAGATG---  Raphanus raphanistrum subsp. maritimus
FD959211       <-- TCTTAACTTCCCACTCGAAGCAGGTAAGCACGAGGACTCTGGAGATG---  Raphanus raphanistrum subsp. maritimus
EX892280       <-- TTTTAACTTCCCACTCGAAGCAGGTAAGCACGAGGACTCCGGAGATGACG  Raphanus sativus var. oleiformis
EW720405       <-- TCTTAACTTCCCACTCGAAGCAGGTAAGCACGAGGACTCTGGAGATGACG  Raphanus sativus var. oleiformis
FD958739       <-- TTTTAACTTCCCACTCGAAGCAGGTAAGCACGAGGACTCTGGAGATG---  Raphanus raphanistrum subsp. maritimus
FD566144       <-- ..................................................  Raphanus sativus var. oleiformis
EW716113       --> TCTTAACTTCCCACTCGAAGCAGGTAAGCACGAGGACTCTGGAGATGACG  Raphanus sativus var. oleiformis
FD962724       --> TCTTAACTTCCCACTCGAAGCAGGTAAGCACGAGGACTCTGGAGATGAC-  Raphanus raphanistrum subsp. maritimus
EX888330       --> TCTTAACTTCCCACTCGAAGCAGGTAAGCACGAGGACTCCGGAGATGACG  Raphanus sativus var. oleiformis
EV550873       --> TCTTAACTTCCCACTCGAAGCAGGTAAGCACGAGGACTCTGGAGATGAC-  Raphanus raphanistrum subsp. raphanistrum (NY)
FD964957       --> TCTTAACTTCCCACTCGAAGCAGGTAAGCACGAGGACTCTGGAGATGAC-  Raphanus raphanistrum subsp. maritimus
FD962128       --> TCTTAACTTCCCACTCGAAGCAGGTAAGCACGAGGACTCTGGAGATGAC-  Raphanus raphanistrum subsp. maritimus
FD562179       --> ..................................................  Raphanus sativus var. oleiformis

               551    -    601
UN16178        --> ACAACAACAAGAAGACTGTGGCTTTGAAAGCTAAGAGGAAGCGATCAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD960819       <-- ACAACAACAAGAAGACTGTGGCTTTGAAAGCTAAGAGGAAGCGATCAGAA  Raphanus raphanistrum subsp. maritimus
FD975416       <-- ACAACAACAAGAAGACTGTGGCTTTGAAAGCTAAGAGGAAGCGATCAGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD530251       <-- ACAACAACAAGAAGACTGTGGCTCTGAAAGCTAAGAGGAAGCGATCAGAA  Raphanus raphanistrum subsp. maritimus
FD959211       <-- ACAACAACAAGAAGACTGTGGCTTTGAAAGCTAAGAGGAAGCGATCAGAA  Raphanus raphanistrum subsp. maritimus
EX892280       <-- ACAACAACAAGAAGACTGTGGCTTTGAAAGTTAAGAGGAAGCGACCAGAA  Raphanus sativus var. oleiformis
EW720405       <-- ACAACAACAAGAAGACTGTGGCTTTGAAAGCTAAGAGGAAGCGACCAGAA  Raphanus sativus var. oleiformis
FD958739       <-- ACAACAACAAGAAGACTGTGGCTTTGAAAGCTAAGAGGAAGCGATCAGAA  Raphanus raphanistrum subsp. maritimus
FD566144       <-- ..................................................  Raphanus sativus var. oleiformis
EW716113       --> ACAACAACAAGAAGACTGTGGCTTTGAAAGCTAAGAGGAAGCGACCAGAA  Raphanus sativus var. oleiformis
FD962724       --> --AACAACAAGAAGACTGTGGCTTTGAAAGCTAAGAGGAAGCGATCAGAA  Raphanus raphanistrum subsp. maritimus
EX888330       --> ACAACAACAAGAAGACTGTGGCTTTGAAAGCTAAGAGGAAGCGACCAGAA  Raphanus sativus var. oleiformis
EV550873       --> --AACAACAAGAAGACTGTGGCTTTGAAAGCTAAGAGGAAGCGATCAGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD964957       --> --AACAACAAGAAGACTGTGGCTTTGAAAGCTAAGAGGAAGCGATCAGAA  Raphanus raphanistrum subsp. maritimus
FD962128       --> --AACAACAAGAAGACTGTGGCTTTGAAAGCTAAGAGGAAGCGATCAGAA  Raphanus raphanistrum subsp. maritimus
FD562179       --> ..................................................  Raphanus sativus var. oleiformis

               601    -    651
UN16178        --> ACAGAGGATGAAAAACATGGGATAAACCTGATCAGCCATAAAGCTGTGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD960819       <-- ACAGAGGATGAAAAACATGGGATAAACCTGATCAGCCATAAAGCTGTGAA  Raphanus raphanistrum subsp. maritimus
FD975416       <-- ACAGAGGATGAAAAACATGGGATAAACCTGATCAGCCATAAAGCTGTGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD530251       <-- ACAGAGGATGAAAAACATGGGATAAACCTGATCAGCCATAAAGCTGTGAA  Raphanus raphanistrum subsp. maritimus
FD959211       <-- ACAGAGGATGAAAAACATGGGATAAACCTGATCAGCCATAAAGCTGTGAA  Raphanus raphanistrum subsp. maritimus
EX892280       <-- ACAGAGGATGAAGACCGTGGGATAAACCTGATCTGCCATAAAGCTGTGAA  Raphanus sativus var. oleiformis
EW720405       <-- ACAGAGGATGAAGACCGTGGGATAAA........................  Raphanus sativus var. oleiformis
FD958739       <-- ACAGAGGATGAAAAACATGGGATAAACCTGATCAGCCATAAAGCTGTGAA  Raphanus raphanistrum subsp. maritimus
FD566144       <-- ..................................................  Raphanus sativus var. oleiformis
EW716113       --> ACAGAGGATGAAGACCGTGGGATAAACCTGATCTGCCATAAAGCTGTGAA  Raphanus sativus var. oleiformis
FD962724       --> ACAGAGGATGAAAAACATGGGATAAACCTGATCAGCCATAAAGCTGTGAA  Raphanus raphanistrum subsp. maritimus
EX888330       --> ACAGAGGATGAAGACCGTGGGATAAACCTGATCTGCCATAAAGCTGTGAA  Raphanus sativus var. oleiformis
EV550873       --> ACAGAGGATGAAAAACATGGGATAAACCTGATCAGCCATAAAGCTGTGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD964957       --> ACAGAGGATGAAAAACATGGGATAAACCTGATCAGCCATAAAGCTGTGAA  Raphanus raphanistrum subsp. maritimus
FD962128       --> ACAGAGGATGAAAAACATGGGATAAACCTGATCAGCCATAAAGCTGTGAA  Raphanus raphanistrum subsp. maritimus
FD562179       --> ..................................................  Raphanus sativus var. oleiformis

               651    -    701
UN16178        --> AAGGGAAGAGACAGAAGCTCAGGGTGAGGCTTGTCCGTTGACACCGTCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD960819       <-- AAGGGAAGAGACAGAAGCTCAGGGTGAGGCTTGTCCGTTGACACCGTCAA
FD975416       <-- AAGGGAAGAGACAGAAGCTCAGGGTGAGGCTTGTCCGTTGACACCGTCAA
FD530251       <-- AAGGGAAGAGACAGAAGCTCAGGGTGAGGCTTGTCCGTTGACACCGTCAA
FD959211       <-- AAGGGAAGAGACAGAAGCTCAGGGTGAGGCTTGTCCGTTGACACCGTCAA
EX892280       <-- AAGGGAAGAGACGGAAGCTCAGGGTGAGGCTTGTCCGTTGACACCGTCAA
EW720405       <-- ..................................................
FD958739       <-- AAGGGAAGAGACAGAAGCTCAGGGTGAGGCTTGTCCGTTGACCCCGTCAA
FD566144       <-- ..................................................
EW716113       --> AAGGGAAGAGACGGAAGCTCAGGGTGAGGCTTGTCCGTTGACACCGTCAA
FD962724       --> AAGGGAAGAGACAGAAGCTCAGGGTGAGGCTTGTCCGTTGACACCGTCAA
EX888330       --> AAGGGAAGAGACGGAAGCTCAGGGTGAGGCTTGTCCGTTGACACCGTCAA
EV550873       --> AAGGGAAGAGACAGAAGCTCAGGGTGAGGCTTGTCCGTTGACACCGTCAA
FD964957       --> AAGGGAAGAGACAGAAGCTCAGGGTGAGGCTTGTCCGTTGACACCGTCAA
FD962128       --> AAGGGAAGAGACAGAAGCTCAGGGTGAGGCTTGTCCGTTGACACCGTCAA
FD562179       --> ..................................................

               701    -    751
UN16178        --> GTTGGATGGGG-TTTTGGGACGGAGTAGACGGTATAGGGATGGGACTATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD960819       <-- GTTGGATGGGG-TTTTGGGACGGAGTAGACGGTATAGGGATGGGACTATT
FD975416       <-- GTTGGATGGGG-TTTTGGGACGGAGTAGACGGTATAGGGATGGGACTATT
FD530251       <-- GTTGGATGGGG-TTTTGGGACGGAGTAGACGGTATAGGGATGGGACTATT
FD959211       <-- GTTGGATGGGG-TTTTGGGACGGAGTAGACGGTATAGGGATGGGACTATT
EX892280       <-- GTTGGATGGGG-TTTTGGGACGGAGTAGACGGTATAGGGATGGGACTATT
EW720405       <-- ..................................................
FD958739       <-- GTTG-ATGGGG-TTTTGGGACGGAGTAGACGGTATAGGGATGGGACTATT
FD566144       <-- ....................................GGGATGGGACTATT
EW716113       --> GTTGGATGGGG-TTTTGGGACGGAGTA.......................
FD962724       --> GTTGGATGGGG-TTTTGGGACGGAGTAGAC....................
EX888330       --> GTTGGATGGGG-TTTTGGGACGGAGTAGACGGTATAGGGATGGGACTATT
EV550873       --> GTTGGATGGGGGTTTTGGGACGGAGTAGACGGTATAGGGATGGGACTATT
FD964957       --> GTTGGATGGGG-TTTTGGGACGGAGTAGACG-TATAGGGATGGGACTATT
FD962128       --> GTTG-ATGGGG-TTTTGGGACGGAGTAGACGGTATAGGGATGGGACTATT
FD562179       --> ....................................GGGATGGGACTATT

               751    -    801
UN16178        --> CTCTGTCCCTCCGTTATCTCCTTATCCATCTCTAGGACATTCTCAACTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD960819       <-- CTCTGTCCCTCCGTTATCTCCTTATCCATCTCTAGGACATTCTCAACTCG  Raphanus raphanistrum subsp. maritimus
FD975416       <-- CTCTGTCCCTCCGTTATCTCCTTATCCATCTCTAGGACATTCTCAACTCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD530251       <-- CTCTGTCCCTCCGTTATCTCCTTATCCATCTCTAGGACATTCTCAACTCG  Raphanus raphanistrum subsp. maritimus
FD959211       <-- CTCTGTCCCTCCGTTATCTCCTTATCCATCTCTAGGACATTCTCAACTCG  Raphanus raphanistrum subsp. maritimus
EX892280       <-- CTCTGTGCCTCCGTTATCTCCTTATCCATCTTTAGGACATTCTCAACTCG  Raphanus sativus var. oleiformis
EW720405       <-- ..................................................  Raphanus sativus var. oleiformis
FD958739       <-- TTCTGTCCCTCCGTTATCTCCTTATCCATCTTTAGGACATTCTCAACTCG  Raphanus raphanistrum subsp. maritimus
FD566144       <-- CTCTGTGCCTCCGTTATCTCCTTATCCATCTTTAGGACATTCTCAACTCG  Raphanus sativus var. oleiformis
EW716113       --> ..................................................  Raphanus sativus var. oleiformis
FD962724       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX888330       --> CTCTGTGCCTCCGTTATCTCCTTATCCATCTCTAGGACATTCTCAACTCG  Raphanus sativus var. oleiformis
EV550873       --> CTCTGTCCCTCCGTTATCTCCTTATCCATCTCTAGGACATTCTCAACTCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD964957       --> CTCTGTCCCTCCGTTATCTCCTTATCCATCTCTAGGACATTCTCAACTCG  Raphanus raphanistrum subsp. maritimus
FD962128       --> CTCTGTCCCTCCGTTATCTCCTTATCCATCTCTAGGACATTCTCAACTCG  Raphanus raphanistrum subsp. maritimus
FD562179       --> CTCTGTGCCTCCGTTATCTCCTTATCCATCTCTAGGACATTCTCAACTCG  Raphanus sativus var. oleiformis

               801    -    851
UN16178        --> GGGTTAAGTAAGCTTATTGATGGAGGTGACATCCGCAACTTTGGATTATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD960819       <-- GGGTTAAGTAAGCTTATTGATGGAGGTGACATCCGCAACTTTGGATTATA
FD975416       <-- GGGTTAAGTAAGCTTATTGATGGAGGTGACATCCGCAACTTTGGATTATA
FD530251       <-- GGGTTAAGTAAGCTTATTGATGGAGGTGACATCCGCAACTTTGGATTATA
FD959211       <-- GGGTTAAGTAAGCTTATTGATGGAGGTGACATCCGCAACTTTGGATTATA
EX892280       <-- GGGTTAAGTAAGCTTATTGATGGAGGTGACATCCGCAACTTTGGATTATA
EW720405       <-- ..................................................
FD958739       <-- GGGTTAAGTAAGCTTATTGATGGAGGTGACATCCGCAACTTTGGATTATA
FD566144       <-- GGGTTAAGTAAGCTTATTGATGGAGGTGACATCCGCAACTTTGGATTATA
EW716113       --> ..................................................
FD962724       --> ..................................................
EX888330       --> GGGTTAAGTAAGCTTATTGATGGAG-TGACATCCGCAACTTTGGATTATA
EV550873       --> GGGTTAAGTAAGCTTATTGATGGAGGTGACATCCGCAACTTTGGATTATA
FD964957       --> GGGTTAAGTAAGCTTATTGATGGAG-TGACATCCGCAACTTTGGATat..
FD962128       --> GGGTTA............................................
FD562179       --> GGGTTAAGTAAGCTTATTGATGGAGGTGACATCCGCAACTTTGGATTATA

               851    -    901
UN16178        --> AACCATCGGCAAGCAAACACACAAATAAGATAGTAATTATATACACATAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD960819       <-- AACCATCGGCAAGCAAACACACAAATAAGATAGTAATTATATACACATAA
FD975416       <-- AACCATCGGCAAGCAAACACACAAATAAGATAGTAATTATATACACATAA
FD530251       <-- AACCATCGGCAAGCAAACACACAAATAAGATAGTAATTATATACACATAA
FD959211       <-- AACCATCGGCAAGCAAACACACAAATAAGATAGTAATTATATACACATAA
EX892280       <-- AACCATCGGCAAGCAAACACACAAATAAGATAGTAATTATATACACATAA
EW720405       <-- ..................................................
FD958739       <-- AACCATCGGCAAGCAAACACACAAATAAGATAGTAATTATATACACATAA
FD566144       <-- AACCATCGGCAAGCAAACACACAAATAAGATAGTAATTATATACACATAA
EW716113       --> ..................................................
FD962724       --> ..................................................
EX888330       --> AACCATCGGCAAGCAAAacac.............................
EV550873       --> AACCATCGGCAAGCAAACACACAAATAAGATAGTAATTATATACACATAA
FD964957       --> ..................................................
FD962128       --> ..................................................
FD562179       --> AAC...............................................

               901    -    951
UN16178        --> AGGACTGTACTCAAGATTCCTCATGGAGTGAATTAGTTTTTTTAGCTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD960819       <-- AGGACTGTACTCAAGATTCCTCATGGAGTGAATTAGTTTTTTTAGCTTGA
FD975416       <-- AGGACTGTACTCAAGATTCCTCATGGAGTGAATTAGTTTTTTTAGCTTGA
FD530251       <-- AGGACTGTACTCAAGATTCCTCATGGAGTGAATTAGTTTTTTTAGCTTGA
FD959211       <-- AGGACTGTACTCAAGATTCCTCATGGAGTGAATTAGTTTTTTTAGC....
EX892280       <-- AGGACTGTACTCAAGATTCCTCATGGAGTGAATTAGTTTTTTTAGCTTGA
EW720405       <-- ..................................................
FD958739       <-- AGGACTGTACTCAAGATTCCTCATGGAGTGAATTAGTTTTTTTAGCTTGA
FD566144       <-- AGGACTGTACTCAAGATTCCTCATGGAGTGAATTAGTTTTTTTAGCTTGA
EW716113       --> ..................................................
FD962724       --> ..................................................
EX888330       --> ..................................................
EV550873       --> AGGACTGTACTCA-GA-TCCTCATGGAGTGAAT-AGTTTTTT-AGCTTGA
FD964957       --> ..................................................
FD962128       --> ..................................................
FD562179       --> ..................................................

               951    -   1001
UN16178        --> TTGATTGTAACTGCTTTGTTATATTCATTCGTTCTTCTCAATGCAATAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD960819       <-- TTGATTGTAACTGCTTTGTTATATTCATTCGTTCTTCTCAATGCAATTAT
FD975416       <-- TTTATTGTAACTGCTTTGTTATATTCATTCGTTCTTCTC...........
FD530251       <-- TTGATTGTAACTGCTTTGTTATATTCATTCGTTCTTCTCAATGC......
FD959211       <-- ..................................................
EX892280       <-- TTGATTGTAACTGCTTTGTTATATTCATTCGTTCTTCTCAATGCAATAAT
EW720405       <-- ..................................................
FD958739       <-- TTGATTGTAACTGCTTTGTTATATTCATTCGTTTTTCTC...........
FD566144       <-- TTGATTGTAACTGCTTTGTTATATTCATTCGTTCTTCTCAATGCAATAAT
EW716113       --> ..................................................
FD962724       --> ..................................................
EX888330       --> ..................................................
EV550873       --> T-GA-TGTAACTGCTTTGT-ATATTC........................
FD964957       --> ..................................................
FD962128       --> ..................................................
FD562179       --> ..................................................

               1001   -   1051
UN16178        --> CTCAACTCTTCC..
                   ~~~~~~~~~~~~~~
FD960819       <-- CTCAACTCTTCCtt
FD975416       <-- ..............
FD530251       <-- ..............
FD959211       <-- ..............
EX892280       <-- CACAACTCTTCCtc
EW720405       <-- ..............
FD958739       <-- ..............
FD566144       <-- ..............
EW716113       --> ..............
FD962724       --> ..............
EX888330       --> ..............
EV550873       --> ..............
FD964957       --> ..............
FD962128       --> ..............
FD562179       --> ..............