Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN16192

               1      -     51
UN16192        --> GCAATTTGTAAATCAAATAATAATAAGTGAGATTGTATTTTTGACATATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD948203       <-- ..................................................
EW730477       --> GCAATTTGTAAATCAAATAATAATAAGTGAGATTGTATTTTTGACATATC
FD945342       --> ..................gATAATAAGTGAGATTGTATTTTTGACATATC
EX893849       --> ..................agTAATAAGTGAGATTGTATTTTTGACATATC
FD944030       --> .....................AATAAGTGAGATTGTATTTTTGACATATC
EY926186       --> ........................AAGTGAGATTGTATTTTTGACATATC
EY895047       --> ..........................................GACATATC

               51     -    101
UN16192        --> ATATGTATACTACAAATGTACAACAATAAGTTTTTT-GACCACAATAGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD948203       <-- ..................................................
EW730477       --> ATATGTATACTACAAATGTACAACAATAAGTTTTTT-GACCACAATAGGT
FD945342       --> ATATGTATACTACAAATGTACAACAATAAGTTTTTTTGACCACAACAGGT
EX893849       --> ATATGTATACTACAAATGTACAACAATAAGTTTTTT-GACCACAATAGGT
FD944030       --> ATATGTATACTACAAATGTACAACAATAAGTTTTTTTGACCACAATAGGT
EY926186       --> ATATGTATACTACAAATGTACAACAATAAGTTTTTT-GACCACAATAGGT
EY895047       --> ATATGTATACTACAAATGTACAACAATAAGTTTTTT-GACCACAATAGGT

               101    -    151
UN16192        --> TGAAAGATCTTTGGATTGGTTTCCTCTGTCTTTCTGGTTTAAATTTAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD948203       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW730477       --> TGAAAGATCTTTGGATTGGTTTCCTCTGTCTTTCTGGTTCAAATTTAAAG  Raphanus sativus cv Early Scarlet Globe
FD945342       --> TGAAAGATCTTTGGATTGGTTTCCTCTGTCTTTCTGGTTCAAATTTAAAG  Raphanus sativus cv Early Scarlet Globe
EX893849       --> TGAAAGATCTTTGGATTGGTTTCCTCTGTCTTTCTGGTTTAAATTTAAAG  Raphanus sativus var. oleiformis
FD944030       --> TGAAAGATCTTTGGATTGGTTTCCTCTGTCTTTCTGGTTCAAATTTAAAG  Raphanus sativus cv Early Scarlet Globe
EY926186       --> TGAAAGATCTTTGGATTGGTTTCCTCTGTCTTTCTGGTTTAAATTTAAAG  Raphanus sativus var. oleiformis
EY895047       --> TGAAAGATCTTTGGATTGGTTTCCTCTGTCTTTCTGGTTTAAATTTAAAG  Raphanus raphanistrum subsp. maritimus

               151    -    201
UN16192        --> ATAACATGGATAAGACAGATTTTTCAGTGAGCCCTATCCTGAGTTTTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD948203       <-- ..................................................
EW730477       --> ATAACATGGATAAGACAGATTTTTCAGTGAGCCCTATCCTGAGTTTTTTT
FD945342       --> ATAACATGGATAAGACAGATTTTTCAGTGAGCCCTATCCTGAGTTTTTTT
EX893849       --> ATAACATGGATAAGACAGATTTTTCAGTGAGCCCTATCCTGAGTTTTTTT
FD944030       --> GTAACATGGATAAGACAGATTTTTCAGTGAGCCCTATCCTGAGTTTTTTT
EY926186       --> ATAACATGGATAAGACAGATTTTTCAGTGAGCCCTATCCCGAGTTTTTTT
EY895047       --> ATAACATGGATAAGACAGATTTTTCAGTGAGCCCTATCCCGAGTTTTTTT

               201    -    251
UN16192        --> TTT--CACTTGTGGCTGAAGAAACTTGAAACTGAATCGGTTCTCAAGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD948203       <-- ........................................TCTCAAGTTG
EW730477       --> TTT-TCACTTGTGGCTGAAGAAACTTGAAACTGAATCGGTTCTCAAGTTG
FD945342       --> TTT--CACTTGTGGCTGAAGAAACTTGAAACTGAATCGGTTCTCAAGTTG
EX893849       --> TT---CACTTGTGGCTGAAGAAACTTGAAACTGAATCGGTTCTCAAGTTG
FD944030       --> TTT--CACTTGTGGCTGAAGAAACTTGAAACTGAATCGGTTCTCAAGTTG
EY926186       --> TTTTTTACTTGAGGCTGAAGAAACTTGAAACTGAATCGGTTCTCAAGTTG
EY895047       --> TTT---ACTTGAGGCTGAAGAAACTTGAAACTGAATCGGTTCTCAAGTTG

               251    -    301
UN16192        --> TTGTAAAGACATTGTGAGTGAATTTCCCAGCTTGATGATGTCTGATCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD948203       <-- TTGTAAAGACATTGTGAGTGAATTTCCCAGCTTGATGATGTCTGATCTTT
EW730477       --> TTGTAAAGACATTGTGAGTGAATTTCCCAGCTTGATGATGTCTGATCTTT
FD945342       --> TTGTAAAGACATTGTGAGTGAATTTCCCAGCTTGATGATGTCTGATCTTT
EX893849       --> TTGTAAAGACATTGTGAGTGAATTTCCCAGCTTGATGATGTCTGATCTTT
FD944030       --> TTGTAAAGACATTGTGAGTGAATTTCCCAGCTTGATGATGTCTGATCTTT
EY926186       --> TTGTAAAGACATTGTGAGTGAAGTTCCCAGCTTGATGATGTCTGATCTTT
EY895047       --> TTGTAAAGACATTGTGAGTGAAGTTCCCAGCTTGATGATGTCTGATCTTT

               301    -    351
UN16192        --> CTGAGAGCTAAGAATTGTGGTTTGGTTTGAATTTATGAGAGAGTAGTCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD948203       <-- CTGAGAGCTAAGAATTGTGGTTTGGTTTGAATTTATGAGAGAGTAGTCTA
EW730477       --> ---AGAGCTAAGAATTGTGGTTTGGTTTGAATTTATGAGAGAGTAGTCTA
FD945342       --> CTGAAAGCTAA.......................................
EX893849       --> ---AGAGCTAAAAATTGTGGTTTGGTTTGAATTTATGAGAGAGTAGTCTA
FD944030       --> CTGAGAGCTAAGAATTGTGGTTTGGTTTGAATTTATGAGAGAGTAGTCTA
EY926186       --> ---AGAGCTAAAAATTGTGGTTTGGTTTGAATTTATGAGAGAGTAATCTA
EY895047       --> CTGAGAGCTAAGAATTGTGGTTTGGTTTGAATTTATGAGAGAGTAATCTA

               351    -    401
UN16192        --> GAGATCCATGCTGCTGTAATGGAAAAGAACTTGCATCCACCATCATTGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD948203       <-- GAGATCCATGCTGCTGTAATGGAAAAGAACTTGCATCCACCATCATTGGC
EW730477       --> GAGATCCATGCTGCTGTAATGGAAAAGAACTTGCATCCACCATCATTGGC
FD945342       --> ..................................................
EX893849       --> GAGATCCATGCTGCTGTAATGGAAAAAAACTTGCATCCACCATCATTGGC
FD944030       --> GAGATCCATGCTGCTGTAATGGAAAAGAACTTGCATCCACCATCATTGGC
EY926186       --> GAGATCCATGCTGCTGTAATGGAGAAAAACTTGCATCCACCATCATTGGC
EY895047       --> GAGATCCATGCTGCTGTAATGGAAAAGAACTTGCATCCACCATCATTGGC

               401    -    451
UN16192        --> TGCTTTGAGACAGCTTCTGGAAGATCTGTGAAGCATGCCTGAAACTGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD948203       <-- TGCTTTGAGACAGCTTCTGGAAGATCTGTGAAGTATGCCTGAAACTGTTT  Raphanus sativus cv Early Scarlet Globe
EW730477       --> TGCTTTGAGACAGCTTCTGGAAGATCTGTGAAGCATGCCTGAAACTGTTT  Raphanus sativus cv Early Scarlet Globe
FD945342       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX893849       --> TGCTTTGGGACAGCTTCTGGAAAATTTGTGAAGCAAGCCTGAAACTGTTT  Raphanus sativus var. oleiformis
FD944030       --> TGCTTTGAGACAGCTTCTGGAAGATCTGTGAAGTATGCCTGAAACTGTTT  Raphanus sativus cv Early Scarlet Globe
EY926186       --> TGCTTTGAGACAGCTTCTGGAAGATCTGTGAAGCAAGCCTGAAACTGTTT  Raphanus sativus var. oleiformis
EY895047       --> TGCTTTGAGACAGCTTCTGGAAGATCTGTGAAGCAAGCCTGAAACTGTTT  Raphanus raphanistrum subsp. maritimus

               451    -    501
UN16192        --> AGTGGATAATTCATTGATATGAAACTCAAGCTCTGGATTTAAGACAGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD948203       <-- AGTGGATAATTCATTGATATGAAACTCAAGCTCTGGATTTAAGACAGAGA
EW730477       --> AGTGGATAATTCATTGATATGAAACTCAAGCTCTGGATTTAAGACAGAGA
FD945342       --> ..................................................
EX893849       --> AGTGGATAATTCATTGATATGAAACTCAAGCTCTGGATTTAAGACAGAGA
FD944030       --> AGTGGATAATTCATTGATATGAAACTCAAGCTCTGGATTTAAGACAGAGA
EY926186       --> AGTGGATAATTCATTGATATGAAACTCAAGCTCTGGATTTAAGACAGAGA
EY895047       --> AGTGGATAATTCATTGATATGAAACTCAAGCTCTGGATTTAAGACAGAGA

               501    -    551
UN16192        --> GTTTCATAGACAAGAACTCGACTTGTTGCTGCAGAGATTGGACATAGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD948203       <-- GTTTCATAGACAAGAACTCGACTTGTTGCTGCAGAGATTGGACATAGTTG
EW730477       --> GTTTCATAGACAAGAACTCGACTTGTTGCTGCAGAGATTGGACATAGTTG
FD945342       --> ..................................................
EX893849       --> GTTTCATAAACAAAAACTCGACTTGTTGCTGCAGAAATTGGACATAGTTG
FD944030       --> GTTTCATAGACAA.....................................
EY926186       --> GTTTCATAGACAAGAACTCGACTTGTTGTTGCAGAGATTGGACATAGTTG
EY895047       --> GTTTCATAGACAAGAACTCGACTTGTTGTTGCAGAGATTGGACATAGTTG

               551    -    601
UN16192        --> ATGATCTCATCAAGCATACCGGCTTTACCAGTAACTTTATTGCATCCAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD948203       <-- ATGATCTCATCAAGCATACCGGCTTTACCAGTAACTTTGTTGCATCCAGG
EW730477       --> ATGATCTCATCAAGCATGCCGGCTTTACCAGTAACTTTGTTGCATCCAGG
FD945342       --> ..................................................
EX893849       --> ATGACCTCATCAAGCATACCGGCTTTACCAGTAACTTTATTGCATCCAGG
FD944030       --> ..................................................
EY926186       --> ATGATCTCATCAAGCATACCGGCTTTACCAGTAACTTTATTGCATCCAGG
EY895047       --> ATGATCTCATCAAGCATACCGGCTTTACCAGTAACTTTATTGCATCCAGG

               601    -    651
UN16192        --> AACAATGTCTTGAAGACATTTCATCTTCTTGCTTAACTTTTCTCTCCTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD948203       <-- AACAATGTCTTGAAGACATTTCATCTTCTTGCTTAACTTTTCTCTCCTTG
EW730477       --> AACAATGTCTTGAAGACATTTCATCTTCTTGCTTAACTTTTCTCTCCTTG
FD945342       --> ..................................................
EX893849       --> AACAATGTCTTGAAGACATTTCATCTTCTTGCTTAACTTTTCTCTCCTTG
FD944030       --> ..................................................
EY926186       --> AACAATGTCTTGAAGACATTTCATCTTCTTGCTTAACTTTTCTCTCCTTG
EY895047       --> AACAATGTCTTGAAGACATTTCATCTTCTTGCTTAACTTTTCTCTCCTTG

               651    -    701
UN16192        --> CCCTTTCTGCTAAGCTATGTCTGTCGGTGGCTTCACCTCGCCTAGCTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD948203       <-- CCCTTTCTGCTAAGCTATGTCTGTCGGTGGCTTCACCTCGTCTAGCTCTC
EW730477       --> CCCTTTCTGCTAAGCTATGTCTGTCGGTGGCTTCACCTCGTCTAGCTCTC
FD945342       --> ..................................................
EX893849       --> CCCTTTCTGCTAAGCTATGTCTGTCGGTGGCTTCACCTCGCCTAGCTCTC
FD944030       --> ..................................................
EY926186       --> CCCTTTCTGCTAAGCTATGTCTGTCGGTGGCTTCACCTCGCCTAGCTCTC
EY895047       --> CCCTTTCTGCTAAGCTATGTCTGTCGGTGGCTTCACCTCGCCTAGCTCTC

               701    -    751
UN16192        --> ACATGGATGTAGTCTCGCTTCTGAATCTCTGAGGATGTCTCTGAGTTGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD948203       <-- ACATGGATGTAGTCTCGCTTCTGAATCTCTGAGGATGTCTCTGAGTTGCT
EW730477       --> ACATGGATGTAGTCTCGCTTCTGAATCTCTGAGGACGTCTCTGAGTTGCT
FD945342       --> ..................................................
EX893849       --> ACATGGATGTAGTCTCGCTTCTGAATCTCTGAGGATGTCTCTGAGTTGCT
FD944030       --> ..................................................
EY926186       --> ACATGGATGTAGTCTCGCTTCTGAATCTCTGAGGATGTCTCTGAGTTGCT
EY895047       --> ACATGGATGTAGTCTCGCTTCTGAATCTCTGAGGATGTCTCTGAGTTGCT

               751    -    801
UN16192        --> CATGTTTGATTTTCCTTTCATGCTTGACTCTGTTTCATCCTCTGTTTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD948203       <-- CATGTTTGATTTTCCTTTCATGCTTGACTCTGTTTCATCCTCTGTTTTGA
EW730477       --> CATGTTTGATTT......................................
FD945342       --> ..................................................
EX893849       --> CATGTTTGATTTTCCTTTCATGCTTGACTCTGTTTCATCCTCTGTTTTGA
FD944030       --> ..................................................
EY926186       --> CATGTTTGATTTTCCTTTCATGCTTGACTCTGTTTCATCCTCTGTTTTGA
EY895047       --> CATGTTTGATTTTCCTTTCATGCTTGACTCTGT.................

               801    -    851
UN16192        --> TCTTCTTCTT--T-TTGTTCTCTATTTTTTCTGTCTTACCCTCTGTTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD948203       <-- TCTTATTCTT--T-TTGTTCTCTATTTTTTCTGTCTTACCCTCTGTTTTT
EW730477       --> ..................................................
FD945342       --> ..................................................
EX893849       --> TCTTCTTCTTc.......................................
FD944030       --> ..................................................
EY926186       --> TCTTCTTCTTCTTGTTGTTCTCTATCTTTTCTGTCTTACCCTCTGTTTTT
EY895047       --> ..................................................

               851    -    901
UN16192        --> CTCTTGGACTGCAAGGCAATGACTCTGTTTTCTTCATTGTTCTTCACTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD948203       <-- CTCTTGGACTGCAAGGCAATGACTCTGTTTTCTTCATTGTTCTTCACTTG
EW730477       --> ..................................................
FD945342       --> ..................................................
EX893849       --> ..................................................
FD944030       --> ..................................................
EY926186       --> CTCTTGtgc.........................................
EY895047       --> ..................................................

               901    -    951
UN16192        --> TTCCATTTGGAAGCTACTTGTCCTTGAGATGCGACCATCAATAGTTTCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD948203       <-- TTCCATTTGGAAGCTACTTGTCCTTGAGATGCGACCATCAATAGTTTCAT
EW730477       --> ..................................................
FD945342       --> ..................................................
EX893849       --> ..................................................
FD944030       --> ..................................................
EY926186       --> ..................................................
EY895047       --> ..................................................

               951    -   1001
UN16192        --> AATGTCTGAAACCCTGCATCTCATCATTATTGTTTCCCAAATAACTCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD948203       <-- AATGTCTGAAACCCTGCATCTCATCATTATTGTTTCCCAAATAACTCTCA
EW730477       --> ..................................................
FD945342       --> ..................................................
EX893849       --> ..................................................
FD944030       --> ..................................................
EY926186       --> ..................................................
EY895047       --> ..................................................

               1001   -   1051
UN16192        --> ACCCTTTTCC
                   ~~~~~~~~~~
FD948203       <-- ACCCTTTTCC
EW730477       --> ..........
FD945342       --> ..........
EX893849       --> ..........
FD944030       --> ..........
EY926186       --> ..........
EY895047       --> ..........