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Alignment for radish unigene UN16215

               1      -     51
UN16215        --> GGCAAAGCTTAGCTTAAGCTTAAAGAAGATAATATATATCTCAACTTAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD548259       <-- GGCAAAGCTTAGCTTAAGCTTAAAGAAGATAATATATATCTCAACTTAAC
EV551186       <-- ..................................................
FY433496       <-- ..................................................
FY433983       <-- ..................................................
FY434167       <-- ..................................................
FY434971       <-- ..................................................
FY435013       <-- ..................................................
FY438879       <-- ..................................................
FD982273       <-- ..................................................
FY437237       <-- ..................................................
FY438562       <-- ..................................................
FD544466       --> GGCAAAGCTTAGCTTAAGCTTAAAGAAGATAATATATATCTCAACTTAAC
EV546333       --> ..................................................
FD977869       --> ..................................................
FD546310       --> ..................................................

               51     -    101
UN16215        --> GAGTGTTCTCGCATAGACATGACATGGTTAAAGAGTTAACCATGAGCTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD548259       <-- GAGTGTTCTCGCATAGACATGACATGGTTAAAGAGTTAACCATGAGCTGA
EV551186       <-- ..................................................
FY433496       <-- ..................................................
FY433983       <-- ..................................................
FY434167       <-- ..................................................
FY434971       <-- ..................................................
FY435013       <-- ..................................................
FY438879       <-- ..................................................
FD982273       <-- ..................................................
FY437237       <-- ..................................................
FY438562       <-- ..................................................
FD544466       --> GAGTGTTCTCGCATAGACATGACATGGTTAAAGAGTTAACCATGAGCTGA
EV546333       --> ..................................................
FD977869       --> ..................................................
FD546310       --> ..................................................

               101    -    151
UN16215        --> GAGATGATGAATCCACGGCTGACATAACTATTTTCTGACTCGAGATGAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD548259       <-- GAGATGATGAATCCACGGCTGACATAACTATTTTCTGACTCGAGATGAAC
EV551186       <-- ..................................CTGACTCGAGATGAAC
FY433496       <-- ..................................CTGACTCGAGATGAAC
FY433983       <-- ..................................CTGACTCGAGATGAAC
FY434167       <-- ..................................CTGACTCGAGATGAAC
FY434971       <-- ..................................CTGACTCGAGATGAAC
FY435013       <-- ..................................CTGACTCGAGATGAAC
FY438879       <-- ..................................CTGACTCGAGATGAAC
FD982273       <-- ....................................ggCTCGAGATGAAC
FY437237       <-- ..............................................GAAC
FY438562       <-- ..............................................GAAC
FD544466       --> GAGATGATGAATCCACGGCTGACATAACTATTTTCTGACTCGAGATGAAC
EV546333       --> ..................................CTGACTCGAGATGAAC
FD977869       --> ....................................ggCTCGAGATGAAC
FD546310       --> ............................................ctgact

               151    -    201
UN16215        --> GAGAAAATAAATAATGGTAAAACTTGTCGGTACATAAGTCGAGTTACAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD548259       <-- GAGAAAATAAATAATGGTAAAACTTGTCGGTACATAAGTCGAGTTACAGA
EV551186       <-- GAGAAAATAAATAATGGTAAAACTTGTCGGTACATAAGTCGAGTTACAGA
FY433496       <-- GAGAAAATAAATAATGGTAAAACTTGTCGGTACATAAGTCGAGTTACAGA
FY433983       <-- GAGAAAATAAATAATGGTAAAACTTGTCGGTACATAAGTCGAGTTACAGA
FY434167       <-- GAGAAAATAAATAATGGTAAAACTTGTCGGTACATAAGTCGAGTTACAGA
FY434971       <-- GAGAAAATAAATAATGGTAAAACTTGTCGGTACATAAGTCGAGTTACAGA
FY435013       <-- GAGAAAATAAATAATGGTAAAACTTGTCGGTACATAAGTCGAGTTACAGA
FY438879       <-- GAGAAAATAAATAATGGTAAAACTTGTCGGTACATAAGTCGAGTTACAGA
FD982273       <-- GAGAAAATAAATAATGGTAAAACTTGTCGGTACATAAGTCGAGTTACAGA
FY437237       <-- GAGAAAATAAATAATGGTAAAACTTGTCGGTACATAAGTCGAGTTACAGA
FY438562       <-- GAGAAAATAAATAATGGTAAAACTTGTCGGTACATAAGTCGAGTTACAGA
FD544466       --> GAGAAAATAAATAATGGTAAAACTTGTCGGTACATAAGTCGAGTTACAGA
EV546333       --> GAGAAAATAAATAATGGTAAAACTTGTCGGTACATAAGTCGAGTTACAGA
FD977869       --> GAGAAAATAAATAATGGTAAAACTTGTCGGTACATAAGTCGAGTTACAGA
FD546310       --> cgagaatTAAATAATGGTAAAACTTGTCGGTACATAAGTCGAGTTACAGA

               201    -    251
UN16215        --> CAGATAGAAT-----GGTATAAACATTAAACCAAGTAACACACAATTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD548259       <-- CAGATAGAAT-----GGTATAAACATTAAACCAAGTAACACACAATTGTT
EV551186       <-- CAGATAGAAT-----GGTATAAACATTAAACCAAGTAACACACAATTGTT
FY433496       <-- CAGATAGAAT-----GGTATAAACATTAAACCAAGTAACACACAATTGTT
FY433983       <-- CAGATAGAAT-----GGTATAAACATTAAACCAAGTAACACACAATTGTT
FY434167       <-- CAGATAGAAT-----GGTATAAACATTAAACCAAGTAACACACAATTGTT
FY434971       <-- CAGATAGAAT-----GGTATAAACATTAAACCAAGTAACACACAATTGTT
FY435013       <-- CAGATAGAAT-----GGTATAAACATTAAACCAAGTAACACACAATTGTT
FY438879       <-- CAGATAGAAT-----GGTATAAACATTAAACCAAGTAACACACAATTGTT
FD982273       <-- CAGATAGAAT-----GGTATAAACATTAAACCAAGTAACACACAATTGTT
FY437237       <-- CAGATAGAAT-----GGTATAAACATTAAACCAAGTAACACACAATTGTT
FY438562       <-- CAGATAGAAT-----GGTATAAACATTAAACCAAGTAACACACAATTGTT
FD544466       --> CAGATAGAAT-----GGTATAAACATTAAACCAAGTAACACACAATTGTT
EV546333       --> CAGATAGAAT-----GGTATAAACATTAAACCAAGTAACACACAATTGTT
FD977869       --> CAGATAGAAT-----GGTATAAACATTAAACCAAGTAACACACAATTGTT
FD546310       --> CAGATAGAATAGAATGGTATAAACATTAAACCAAAGTACACACAATTGTT

               251    -    301
UN16215        --> TTTACAGCTCTCATTTTTTAAGCTTTGACTTCTTCAACCTCGTCCAATGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD548259       <-- TTT-CAGCTCTCATTTTTTAAGCTTTGACTTCTTCAACCTAGTCCAATGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV551186       <-- TTT-CAGCTCTCATTTTTTAAGCTTTGACTTCTTCAACCTCGTCCAATGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FY433496       <-- TTTACAGCTCTCATTTTTTAAGCTTTGACTTCTTCAACCTCGTCCAATGC  Raphanus sativus cv GSK3-1
FY433983       <-- TTTACAGCTCTCATTTTTTAAGCTTTGACTTCTTCAACCTCGTCCAATGC  Raphanus sativus cv GSK3-1
FY434167       <-- TTTACAGCTCTCATTTTTTAAGCTTTGACTTCTTCAACCTCGTCCAATGC  Raphanus sativus cv GSK3-1
FY434971       <-- TTTACAGCTCTCATTTTTTAAGCTTTGACTTCTTCAACCTCGTCCAATGC  Raphanus sativus cv GSK3-1
FY435013       <-- TTTACAGCTCTCATTTTTTAAGCTTTGACTTCTTCAACCTCGTCCAATGC  Raphanus sativus cv GSK3-1
FY438879       <-- TTTACAGCTCTCATTTTTTAAGCTTTGACTTCTTCAACCTCGTCCAATGC  Raphanus sativus cv GSK3-1
FD982273       <-- TTT-CAGCTCTCATTTTTTAAGCTTTGACTTCTTCAACCTCGTCCAATGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FY437237       <-- TTTACAGCTCTCATTTTTTAAGCTTTGACTTCTTCAACCTCGTCCAATGC  Raphanus sativus cv GSK3-1
FY438562       <-- TTTACAGCTCTCATTTTTTAAGCTTTGACTTCTTCAACCTCGTCCAATGC  Raphanus sativus cv GSK3-1
FD544466       --> TTT-CAGCTCTCATTTTTTAAGCTTTGACTTCTTCAACCTAGTCCAATGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV546333       --> TTT-CAGCTCTCATTTTTTAAGCTTTGACTTCTTCAACCTCGTCCAATGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977869       --> TTT-CAGCTCTCATTTTTTAAGCTTTGACTTCTTCAACCTCGTCCAATGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD546310       --> TTT-CAGCTCTCATTTTTTAAGCTTTGACTTCTTCAACCTCGTCCAATGC  Raphanus raphanistrum subsp. raphanistrum (NY)

               301    -    351
UN16215        --> GTAGTTGTTGGTCGATATGTTGGCGTAGTTCACTTTCGCGAACCGGACCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD548259       <-- GTAGTTGTTGGTCGATATGTTGGCGTAATTCACTTTCGCGAACCGGACCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV551186       <-- GTAGTTGTTGGTCGATATGTTGGCGTAATTCACTTTCGCGAACCGGACCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY433496       <-- GTAGTTGTTGGTCGATATGTTGGCGTAGTTCACTTTCGCGAACCGGACCA  Raphanus sativus cv GSK3-1
FY433983       <-- GTAGTTGTTGGTCGATATGTTGGCGTAGTTCACTTTCGCGAACCGGACCA  Raphanus sativus cv GSK3-1
FY434167       <-- GTAGTTGTTGGTCGATATGTTGGCGTAGTTCACTTTCGCGAACCGGACCA  Raphanus sativus cv GSK3-1
FY434971       <-- GTAGTTGTTGGTCGATATGTTGGCGTAGTTCACTTTCGCGAACCGGACCA  Raphanus sativus cv GSK3-1
FY435013       <-- GTAGTTGTTGGTCGATATGTTGGCGTAGTTCACTTTCGCGAACCGGACCA  Raphanus sativus cv GSK3-1
FY438879       <-- GTAGTTGTTGGTCGATATGTTGGCGTAGTTCACTTTCGCGAACCGGACCA  Raphanus sativus cv GSK3-1
FD982273       <-- GTAGTTGTTGGTCGATATGTTGGCGTAATTCACTTTCGCGAACCGGACCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY437237       <-- GTAGTTGTTGGTCGATATGTTGGCGTAGTTCACTTTCGCGAACCGGACCA  Raphanus sativus cv GSK3-1
FY438562       <-- GTAGTTGTTGGTCGATATGTTGGCGTAGTTCACTTTCGCGAACCGGACCA  Raphanus sativus cv GSK3-1
FD544466       --> GTAGTTGTTGGTCGATATGTTGGCGTAATTCACTTTCGCGAACCGGACCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV546333       --> GTAGTTGTTGGTCGATATGTTGGCGTAATTCACTTTCGCGAACCGGACCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977869       --> GTAGTTGTTGGTCGATATGTTGGCGTAATTCACTTTCGCGAACCGGACCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD546310       --> GTAGTTGTTGGTCGATATGTTGGCGTAATTCACTTTCGCGAACCGGACCA  Raphanus raphanistrum subsp. raphanistrum (NY)

               351    -    401
UN16215        --> CAACAGGGTACCGAGTCTTCGGATCCTGATCAACGGCCACAACTGCTCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD548259       <-- CAACAGGGTc........................................
EV551186       <-- CAACAGGGTACCTAGTCTTCGGGTCCTGATCAACGGCCACAACTGCTCCA
FY433496       <-- CAACAGGGTACCGAGTCTTCGGATCCTGATCAACGGCCACAACTGCTCCA
FY433983       <-- CAACAGGGTACCGAGTCTTCGGATCCTGATCAACGGCCACAACTGCTCCA
FY434167       <-- CAACAGGGTACCGAGTCTTCGGATCCTGATCAACGGCCACAACTGCTCCA
FY434971       <-- CAACAGGGTACCGAGTCTTCGGATCCTGATCAACGGCCACAACTGCTCCA
FY435013       <-- CAACAGGGTACCGAGTCTTCGGATCCTGATCAACGGCCACAACTGCTCCA
FY438879       <-- CAACAGGGTACCGAGTCTTCGGATCCTGATCAACGGCCACAACTGCTCCA
FD982273       <-- CAACAGGGTACCTAGTCTTCGGGTCCTGATCAACGGCCACAACTGCTCCA
FY437237       <-- CAACAGGGTACCGAGTCTTCGGATCCTGATCAACGGCCACAACTGCTCCA
FY438562       <-- CAACAGGGTACCGAGTCTTCGGATCCTGATCAACGGCCACAACTGCTCCA
FD544466       --> CAACAGGGTc........................................
EV546333       --> CAACAGGGTACCTAGTCTTCGGGTCCTGATCAACGGCCACAACTGCTCCA
FD977869       --> CAACAGGGTACCTAGTCTTCGGGTCCTGATCAACGGCCACAACTGCTCCA
FD546310       --> CAACAGGGTACCGAGTCTTCGGATCCTGATCAACGGCCACAACTGCTCCA

               401    -    451
UN16215        --> ACGTTCTTGAACCAGTAGGATTCTCTCCTTAGGATCTTGACCTTGGACCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD548259       <-- ..................................................
EV551186       <-- ACGTCCTTGAACCAATAGGATTCTCTCCTTAGGATCTTGACCTTGGACCC
FY433496       <-- ACGTTCTTGAACCAGTAGGATTCTCTCCTTAGGATCTTGACCTTGGACCC
FY433983       <-- ACGTTCTTGAACCAGTAGGATTCTCTCCTTAGGATCTTGACCTTGGACCC
FY434167       <-- ACGTTCTTGAACCAGTAGGATTCTCTCCTTAGGATCTTGACCTTGGACCC
FY434971       <-- ACGTTCTTGAACCAGTAGGATTCTCTCCTTAGGATCTTGACCTTGGACCC
FY435013       <-- ACGTTCTTGAACCAGTAGGATTCTCTCCTTAGGATCTTGACCTTGGACCC
FY438879       <-- ACGTTCTTGAACCAGTAGGATTCTCTCCTTAGGATCTTGACCTTGGACCC
FD982273       <-- ACGTTCTTGAACCAATAGGATTCTCTCCTTAGGATCTTGACCTTGGACCC
FY437237       <-- ACGTTCTTGAACCAGTAGGATTCTCTCCTTAGGATCTTGACCTTGGACCC
FY438562       <-- ACGTTCTTGAACCAGTAGGATTCTCTCCTTAGGATCTTGACCTTGGACCC
FD544466       --> ..................................................
EV546333       --> ACGTCCTTGAACCAATAGGATTCTCTCCTTAGGATCTTGACCTTGGACCC
FD977869       --> ACGTTCTTGAACCAATAGGATTCTCTCCTTAGGATCTTGACCTTGGACCC
FD546310       --> ACGTTCTTGAACCAGTAGGATTCTCTCCTTAGGATCTTGACCTTGGACCC

               451    -    501
UN16215        --> TCTCTTAGGGCCGATCGGAGGCGGTTTTGGTTTGGTGGCAGCAGCTCCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD548259       <-- ..................................................
EV551186       <-- TCTCTTAGGGCCGATCGGAGGCGGTTTGGGTTTGGTGGCAGCAGCTCCAC
FY433496       <-- TCTCTTAGGGCCGATCGGAGGCGGTTTTGGTTTGGTGGCAGCAGCTCCAC
FY433983       <-- TCTCTTAGGGCCGATCGGAGGCGGTTTTGGTTTGGTGGCAGCAGCTCCAC
FY434167       <-- TCTCTTAGGGCCGATCGGAGGCGGTTTTGGTTTGGTGGCAGCAGCTCCAC
FY434971       <-- TCTCTTAGGGCCGATCGGAGGCGGTTTTGGTTTGGTGGCAGCAGCTCCAC
FY435013       <-- TCTCTTAGGGCCGATCGGAGGCGGTTTTGGTTTGGTGGCAGCAGCTCCAC
FY438879       <-- TCTCTTAGGGCCGATCGGAGGCGGTTTTGGTTTGGTGGCAGCAGCTCCAC
FD982273       <-- TCTCTTAGGGCCGATCGGAGGCGGTTTGGGTTTGGTGGCAGCAGCTCCAC
FY437237       <-- TCTCTTAGGGCCGATCGGAGGCGGTTTTGGTTTGGTGGCAGCAGCTCCAC
FY438562       <-- TCTCTTAGGGCCGATCGGAGGCGGTTTTGGTTTGGTGGCAGCAGCTCCAC
FD544466       --> ..................................................
EV546333       --> TCTCTTAGGGCCGATCGGAGGCGGTTTGGGTTTGGTGGCAGCAGCTCCAC
FD977869       --> TCTCTTAGGGCCGATCGGAGGCGGTTTGGGTTTGGTGGCAGCAGCTCCAC
FD546310       --> TCTCTTAGGGCCGATCGGAGGCGGTTTTGGTTTGGTGc............

               501    -    551
UN16215        --> CCGGAGCCACGGCAGTTGCTGGTGCACCTTCTGAAGAAGATGTTTCCGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD548259       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV551186       <-- CCGGAGCCACGGGAGTTGCTGGTGCACCTTCTGAAGAAGATGTTTCCGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY433496       <-- CCGGAGCCACGGCAGTTGCTGGTGCACCTTCTGAAGAAGATGTTTCCGCA  Raphanus sativus cv GSK3-1
FY433983       <-- CCGGAGCCACGGCAGTTGCTGGTGCACCTTCTGAAGAAGATGTTTCCGCA  Raphanus sativus cv GSK3-1
FY434167       <-- CCGGAGCCACGGCAGTTGCTGGTGCACCTTCTGAAGAAGATGTTTCCGCA  Raphanus sativus cv GSK3-1
FY434971       <-- CCGGAGCCACGGCAGTTGCTGGTGCACCTTCTGAAGAAGATGTTTCCGCA  Raphanus sativus cv GSK3-1
FY435013       <-- CCGGAGCCACGGCAGTTGCTGGTGCACCTTCTGAAGAAGATGTTTCCGCA  Raphanus sativus cv GSK3-1
FY438879       <-- CCGGAGCCACGGCAGTTGCTGGTGCACCTTCTGAAGAAGATGTTTCCGCA  Raphanus sativus cv GSK3-1
FD982273       <-- CCGGAGCCACGGGAGTTGCTGGTGCACCTTATGAAGAAGATGTTTCCGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY437237       <-- CCGGAGCCACGGCAGTTGCTGGTGCACCTTCTGAAGAAGATGTTTCCGCA  Raphanus sativus cv GSK3-1
FY438562       <-- CCGGAGCCACGGCAGTTGCTGGTGCACCTTCTGAAGAAGATGTTTCCGCA  Raphanus sativus cv GSK3-1
FD544466       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV546333       --> CCGGAGCCACGGGAGTTGCTGGTGCACCTTCTGAAGAAGATGTTTCCGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977869       --> CCGGAGCCACGGGAGTTGCTGGTGCACCTTATGAAGAAGATGTTTCCGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD546310       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               551    -    601
UN16215        --> GCGGCCTCGTCGGCTGCTCTGACTACAAGTCTAGAACCAGCCCTTCTCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD548259       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV551186       <-- GCCGCCTCGTCGGCTGCTCTGACTACAAGTCTAGAACCAGCCCTTCTCAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FY433496       <-- GCGGCCTCGTCGGCTGCTCTGACTACAAGTCTAGAACCAGCCCTTCTCAT  Raphanus sativus cv GSK3-1
FY433983       <-- GCGGCCTCGTCGGCTGCTCTGACTACAAGTCTAGAACCAGCCCTTCTCAT  Raphanus sativus cv GSK3-1
FY434167       <-- GCGGCCTCGTCGGCTGCTCTGACTACAAGTCTAGAACCAGCCCTTCTCAT  Raphanus sativus cv GSK3-1
FY434971       <-- GCGGCCTCGTCGGCTGCTCTGACTACAAGTCTAGAACCAGCCCTTCTCAT  Raphanus sativus cv GSK3-1
FY435013       <-- GCGGCCTCGTCGGCTGCTCTGACTACAAGTCTAGAACCAGCCCTTCTCAT  Raphanus sativus cv GSK3-1
FY438879       <-- GCGGCCTCGTCGGCTGCTCTGACTACAAGTCTAGAACCAGCCCTTCTCAT  Raphanus sativus cv GSK3-1
FD982273       <-- GCCGCCTCGTCGGCTGCTCTGACTACAAGTCTAGAACCAGCCCTTCTCAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FY437237       <-- GCGGCCTCGTCGGCTGCTCTGACTACAAGTCTAGAACCAGCCCTTCTCAT  Raphanus sativus cv GSK3-1
FY438562       <-- GCGGCCTCGTCGGCTGCTCTGACTACAAGTCTAGAACCAGCCCTTCTCAT  Raphanus sativus cv GSK3-1
FD544466       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV546333       --> GCCGCCTCGTCGGCTGCTCTGACTACAAGTCTAGAACCAGCCCTTCTCAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977869       --> GCCGCCTCGTCGGCTGCTCTGACTACAAGTCTAGAACCAGCCCTTCTCAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD546310       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               601    -    651
UN16215        --> CGGTAAGAAAGACACTGAGTTCCTGGAAGACGAAGGGCCGGTGGCCGCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD548259       <-- ..................................................
EV551186       <-- CGGTAAGAAAGACACTGAGTTCCTGGAAGACGAAGGGCCGGTGGCCGCCG
FY433496       <-- CGGTAAGAAAGACACTGAGTTCCTGGAAGACGAAGGGCCGGTGGCCGCCG
FY433983       <-- CGGTAAGAAAGACACTGAGTTCCTGGAAGACGAAGGGCCGGTGGCCGCCG
FY434167       <-- CGGTAAGAAAGACACTGAGTTCCTGGAAGACGAAGGGCCGGTGGCCGCCG
FY434971       <-- CGGTAAGAAAGACACTGAGTTCCTGGAAGACGAAGGGCCGGTGGCCGCCG
FY435013       <-- CGGTAAGAAAGACACTGAGTTCCTGGAAGACGAAGGGCCGGTGGCCGCCG
FY438879       <-- CGGTAAGAAAGACACTGAGTTCCTGGAAGACGAAGGGCCGGTGGCCGCCG
FD982273       <-- CGGTAAGAAAGACACTGAGTTCCTGGAAGACGAAGGGCCGGTGGCCGCCG
FY437237       <-- CGGTAAGAAAGACACTGAGTTCCTGGAAGACGAAGGGCCGGTGGCCGCCG
FY438562       <-- CGGTAAGAAAGACACTGAGTTCCTGGAAGACGAAGGGCCGGTGGCCGCCG
FD544466       --> ..................................................
EV546333       --> CGGTAAGAAAGACACTGAGTTCCTGGAAGACGAAGGGCCGGTGGCCGCCG
FD977869       --> CGGTAAGAAAGACACTGAGTTCCTGGAAGA....................
FD546310       --> ..................................................

               651    -    701
UN16215        --> TGACGTTAGCCGTCAAAACAAACGCCGAAGACGCTGACATCATCGACATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD548259       <-- ..................................................
EV551186       <-- TGACGTTAGCCGTCAAAACAAGCGCCGAAGACGCTGACATCATCGACATC
FY433496       <-- TGACGTTAGCCGTCAAAACAAACGCCGAAGACGCTGACATCATCGACATC
FY433983       <-- TGACGTTAGCCGTCAAAACAAACGCCGAAGACGCTGACATCATCGACATC
FY434167       <-- TGACGTTAGCCGTCAAAACAAACGCCGAAGACGCTGACATCATCGACATC
FY434971       <-- TGACGTTAGCCGTCAAAACAAACGCCGAAGACGCTGACATCATCGACATC
FY435013       <-- TGACGTTAGCCGTCAAAACAAACGCCGAAGACGCTGACATCATCGACATC
FY438879       <-- TGACGTTAGCCGTCAAAACAAACGCCGAAGACGCTGACATCATCGACATC
FD982273       <-- TGACGTTAGCCGTCAAAACAAACGCCGAAGACGCTGACATCATCGACATC
FY437237       <-- TGACGTTAGCCGTCAAAACAAACGCCGAAGACGCTGACATCATCGACATC
FY438562       <-- TGACGTTAGCCGTCAAAACAAACGCCGAAGACGCTGACATCATCGACATC
FD544466       --> ..................................................
EV546333       --> TGACGTTAGCCGTCAAAACAAGCGCCGAAGACGCTGACATCATCGACATC
FD977869       --> ..................................................
FD546310       --> ..................................................

               701    -    751
UN16215        --> TCTGGGATTTTTTTCTCTTTTTTTTTTTTTTGCTTCGTATTGTTGTTC..
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD548259       <-- ..................................................
EV551186       <-- TCTGGGATTTTTTTCTCTTTTTTTTTTTTTTGCTTCGTATTGTTGTTCcg
FY433496       <-- TCTGGGATTataattatttaatttttgcttcgtattg.............
FY433983       <-- TCTGGGATTa........................................
FY434167       <-- TC-GGGATTataattatta...............................
FY434971       <-- ..................................................
FY435013       <-- T.................................................
FY438879       <-- T.................................................
FD982273       <-- TCTGGGATTTTTTTTTCTTTTTTT----TTTGCTTCGTATTGTTGTTCcg
FY437237       <-- TCTGGGATTataattattaattttgctcgta...................
FY438562       <-- T.................................................
FD544466       --> ..................................................
EV546333       --> TCTGGGATTTTTTTCTCTTTTTTTTTTTTTTGCTTCGTATTGTTGTTCcg
FD977869       --> ..................................................
FD546310       --> ..................................................

               751    -    801
UN16215        --> ....
                   ~~~~
FD548259       <-- ....
EV551186       <-- accc
FY433496       <-- ....
FY433983       <-- ....
FY434167       <-- ....
FY434971       <-- ....
FY435013       <-- ....
FY438879       <-- ....
FD982273       <-- accc
FY437237       <-- ....
FY438562       <-- ....
FD544466       --> ....
EV546333       --> accc
FD977869       --> ....
FD546310       --> ....