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Alignment for radish unigene UN16228

               1      -     51
UN16228        --> ATGAATTATGAACTGTTCATATATGTATGTAAAAATTATCAAAATATCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714635       <-- ..................................................
EY922247       <-- ..................................................
EY922306       <-- ..................................................
FD965494       <-- ..................................................
FY454058       <-- ..................................................
FY453171       <-- ..................................................
EV566092       <-- ..................................................
EW714336       <-- ..................................................
EX772895       <-- ..................................................
FD571856       <-- ..................................................
EY918243       --> ATGAATTATGAACTGTTCATATATGTATGTAAAAATTATCAAAATATCTG
EY918289       --> ATGAATTATGAACTGTTCATATATGTATGTAAAAATTATCAAAATATCTG
EV571301       --> ................................gggTTATCAAAATAGCTG
FD565106       --> .................................ggTTATCAAAATAGCCG
EW719154       --> ..................................................

               51     -    101
UN16228        --> GTAACTTGAGTAAGAAAACTCATCAAGACATGGTTTTGTCACACAGCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714635       <-- ..................................................
EY922247       <-- ..................................................
EY922306       <-- ..................................................
FD965494       <-- ..................................................
FY454058       <-- ..................................................
FY453171       <-- ..................................................
EV566092       <-- ..................................................
EW714336       <-- ..................................................
EX772895       <-- ..................................................
FD571856       <-- ..................................................
EY918243       --> GTAACTTGAGTAAGAAAACTCATCAAGACATGGTTTTGTCACACAGCTTC
EY918289       --> GTAACTTGAGTAAGAAAACTCATCAAGACATGGTTTTGTCACACAGCTTC
EV571301       --> GTAA-TT---TAAGAAAACTCAACAAGACATGGTTTTGTCACACAGCTTC
FD565106       --> GTAA-TT---TAAGAAAACTCAACAAGACATGGTTTTGTCACACACCTTC
EW719154       --> ..................................................

               101    -    151
UN16228        --> CATAGGCTGTATATAGCCAAAGAGTGAGAGAAGCCAATGTGTGCATAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714635       <-- ................................................TC
EY922247       <-- ..................................................
EY922306       <-- ..................................................
FD965494       <-- ..................................................
FY454058       <-- ..................................................
FY453171       <-- ..................................................
EV566092       <-- ..................................................
EW714336       <-- ..................................................
EX772895       <-- ..................................................
FD571856       <-- ..................................................
EY918243       --> CATAGGCTGTATATAGCCAAAGAGTGAGAGAAGCCA---TGTGCATAATC
EY918289       --> CATAGGCTGTATATAGCCAAAGAGTGAGAGAAGCCA---TGTGCATAATC
EV571301       --> CATAGGCTGTATATAGCCAAAGAGTGAAAGAAGC-AATGTGTGCACAATC
FD565106       --> CATAGGCTGTATATAGCCAAAGAGTGAAAGAAGC-AATGTGTGCACAATC
EW719154       --> ..........................................GCACAATC

               151    -    201
UN16228        --> ACAAAATTGATCTTATTGGGATATTGTATGGCAAACTCACACTTCTAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714635       <-- ACAAAATTGATCTTATTGGGATAT-GTATGGCAAACTCACACTTCTAAAA
EY922247       <-- ......................ATTGTATGGCAAACTCACA-TTCTAAA-
EY922306       <-- ..................................................
FD965494       <-- ..................................................
FY454058       <-- ..................................................
FY453171       <-- ..................................................
EV566092       <-- ..................................................
EW714336       <-- ..................................................
EX772895       <-- ..................................................
FD571856       <-- ..................................................
EY918243       --> ACAAAATTTATCTTATTGGGAAATTGTATGGCAAACTCACATTTCTAAAA
EY918289       --> ACAAAATTTATCTTATTGGGAAATTGTATGGCAAACTCACATTTCTAAAA
EV571301       --> ACAAAATTGATCTTATTGGGATATTGTATGGCAAACTCACACTTCTAAAA
FD565106       --> ACAAAATTGATCTTATTGGGATATTGTATGGCAAACTCACACTTCTAAAA
EW719154       --> ACAAAATTGATCTTATTGGGATATTGTATGGCAAACTCACACTTCTAAAA

               201    -    251
UN16228        --> CAACAAAACATGGGAAAAGGAAAGCCTAACACTCTCTAGTCTCAAGCCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714635       <-- CAACAAAACATGGGAAAAGGAAAGCCTAACACTCTCTAGTCTCAAGCCGG
EY922247       <-- CAACAAA-CATGGGAAAAGGAAAGC-TAACACTCTCTAGTCTCAAGCCGG
EY922306       <-- ..................................................
FD965494       <-- ..................................................
FY454058       <-- ..................................................
FY453171       <-- ..................................................
EV566092       <-- ..................................................
EW714336       <-- ..................................................
EX772895       <-- ..................................................
FD571856       <-- ..................................................
EY918243       --> CAACAAAACATGGGAAAAGGAAAGCCTAACACTCTCTAGTCTCAAGCCGG
EY918289       --> CAACAAAACATGGGAAAAGGAAAGCCTAACACTCTCTAGTCTCAAGCCGG
EV571301       --> CAACAAAACATGGGAAAAGGAAAGCCTAACACTCTCTAGTCTCAAGCCGG
FD565106       --> CAACAAAACATGGGAAAAGGAAAGCCTAACACTCTCTAGTCTCAAGCCGG
EW719154       --> CAACAAAACATGGGAAAAGGAAAGCCTAACACTCTCTAGTCTCAAGCCGG

               251    -    301
UN16228        --> CATAGAAACCATATGGTGAGTGATCGGTATCCAAACCCAATTAACCAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714635       <-- CATAGAAACCATATGGTGAGTGATCGGTATCCAAACCCAATTAACCAAAG
EY922247       <-- CATAGAAACCATATGGTGAGTGATCGGTATCCAAACCCAATTAACCAAAG
EY922306       <-- .ATAGAAACCATATGGTGAGTGATCGGTATCCAAACCCAATTAACCAAAG
FD965494       <-- ..................................................
FY454058       <-- ..................................................
FY453171       <-- ..................................................
EV566092       <-- ..................................................
EW714336       <-- ..................................................
EX772895       <-- ..................................................
FD571856       <-- ..................................................
EY918243       --> CATAGAAACCATATGGTGAGTGATCGGTATCCAAACCCAATTAACCAAAG
EY918289       --> CATAGAAACCATATGGTGAGTGATCGGTATCCAAACCCAATTAACCAAAG
EV571301       --> CATAGAAACCATATGGTGAGTGATCGGTATCCAAACCCAATTAACCAAAG
FD565106       --> CATAGAAACCATATGGTGAGTGATCGGTATCCAAACCCAATTAACCAAAG
EW719154       --> CATAAAAACCATATGGTGAGTGATCGGTATCCAAACCCAATTAACCAAAG

               301    -    351
UN16228        --> AAAGAGGTCTCTAAATTTAACACCATCTCCACATTCATCATCTTCAAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714635       <-- AAAGAGGTCTCTAAATTTAACACCATCTCCACATTCATCATCTTCAAACA
EY922247       <-- AAAGAGGTCTCTAAATTTAACACCATCTCCACATTCATCATCTTCAAGCA
EY922306       <-- AAAGAGGTCTCTAAATTTAACACCATCTCCACATTCATCATCTTCAAGCA
FD965494       <-- ..................................................
FY454058       <-- ..................................................
FY453171       <-- ..................................................
EV566092       <-- ..................................................
EW714336       <-- ..................................................
EX772895       <-- ..................................................
FD571856       <-- ..................................................
EY918243       --> AAAGAGGTCTCTAAATTTAACACCATCTCCACATTCATCATCTTCAAGCA
EY918289       --> AAAGAGGTCTCTAAATTTAACACCATCTCCACATTCATCATCTTCAAGCA
EV571301       --> AAAGAGGTCTCTAAATTTAACACCATCTCCACATTCATCATCTTCAAGCA
FD565106       --> AAAGAGGTCTCTAAATTTAACACCATCTCCACATTCATCATCTTCAAGCA
EW719154       --> AAAGAGGTCTCTAAATTTAACACCATCTCCACATTCATCATCTTCAAGCA

               351    -    401
UN16228        --> GTTTGAGCAACTGGTTCATCAGATGCTTCAAGCC-TTTCTATTCCTTCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714635       <-- GTTTGAGCAACTGGTTCATCAGATGCTTCAAGCCCTTTCGATCCCTTCCC  Raphanus sativus var. oleiformis
EY922247       <-- GTTTGAGCAACTGGTTCATCAGATGCTTCAAGCC-TTTCTATTCCTTCCC  Raphanus raphanistrum subsp. landra
EY922306       <-- GTTTGAGCAACTGGTTCATCAGATGCTTCAAGCC-TTTCTATTCCTTCCC  Raphanus raphanistrum subsp. landra
FD965494       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FY454058       <-- ..................................................  Raphanus sativus cv GSK3-1
FY453171       <-- ..................................................  Raphanus sativus cv GSK3-1
EV566092       <-- ..................................................  Raphanus raphanistrum subsp. landra
EW714336       <-- ..................................................  Raphanus sativus var. oleiformis
EX772895       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD571856       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY918243       --> GTTTGAGCAACTGGTTCATCAGATGCTTCAAGCC-TTTCTATTCCTTCCC  Raphanus raphanistrum subsp. landra
EY918289       --> GTTTGAGCAACTGGTTCATCAGATGCTTCAAGCC-TTTCTATTCCTTCCC  Raphanus raphanistrum subsp. landra
EV571301       --> GTTTGAGCAACTGGTTCATCAGATGCTTCAAGCC-TTTCTATTCCTTCCC  Raphanus raphanistrum subsp. landra
FD565106       --> GTTTGAGCAACTGGTTCATCAGATGCTTCAAGCC-TTTCGATCCCTTCCC  Raphanus sativus var. oleiformis
EW719154       --> GTTTGAGCAACTGGTTCATCAGATGCTTCAAGCC-TTTCGATCCCTTCCC  Raphanus sativus var. oleiformis

               401    -    451
UN16228        --> CAACCTCAACTCTCAGAAAATCGGCAACCTTCACAGGAGAACCCACCTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714635       <-- CAACCTCAACTCGCAGAAAATCGGCAACCTTCACAGGAGAACCCACCTCC  Raphanus sativus var. oleiformis
EY922247       <-- CAACCTCAACTCTCAGAAAATCGGCAACCTTCACAGGAGAACCCACCTCC  Raphanus raphanistrum subsp. landra
EY922306       <-- CAACCTCAACTCTCAGAAAATCGGCAACCTTCACAGGAGAACCCACCTCC  Raphanus raphanistrum subsp. landra
FD965494       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FY454058       <-- ..................................................  Raphanus sativus cv GSK3-1
FY453171       <-- ..................................................  Raphanus sativus cv GSK3-1
EV566092       <-- ..................................................  Raphanus raphanistrum subsp. landra
EW714336       <-- ..................................................  Raphanus sativus var. oleiformis
EX772895       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD571856       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY918243       --> CAACCTCAACTCTCAGAAAATCGGCAACCTTCACAGGAGAACCCACCTCC  Raphanus raphanistrum subsp. landra
EY918289       --> CAACCTCAACTCTCAGAAAATCGGCAACCTTCACAGGAGAACCCACCTCC  Raphanus raphanistrum subsp. landra
EV571301       --> CAACCTCAACTCTCAGAAAATCGGAAACCTTCACAGGAGAACCCACCTCC  Raphanus raphanistrum subsp. landra
FD565106       --> CAACCTCAACTCGCAGAAAATCGGCAACCTTCACAGGAGAACCCACCTCC  Raphanus sativus var. oleiformis
EW719154       --> CAACCTCAACTCGCAAAAAATCGGCAACCTTCACAGGAGAACCCACCTCC  Raphanus sativus var. oleiformis

               451    -    501
UN16228        --> TTGGACAAATTATCCACCAATGTCTTTATGTTAATAGAATCGTTCACAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714635       <-- TTGGACAAATTATCCACCAACGTCTTTATGTTAATAGAATCGTTCACAAT  Raphanus sativus var. oleiformis
EY922247       <-- TTGGACAAATTATCCACCAATGTCTTTATGTTAATAGAATCGTTCACAAT  Raphanus raphanistrum subsp. landra
EY922306       <-- TTGGACAAATTATCCACCAATGTCTTTATGTTAATAGAATCGTTCACAAT  Raphanus raphanistrum subsp. landra
FD965494       <-- ...GACAGATTATCCACCAACGTCTTTATGTTAATAGAATCGTTCACAAT  Raphanus raphanistrum subsp. maritimus
FY454058       <-- ..................................................  Raphanus sativus cv GSK3-1
FY453171       <-- ..................................................  Raphanus sativus cv GSK3-1
EV566092       <-- ..................................................  Raphanus raphanistrum subsp. landra
EW714336       <-- ..................................................  Raphanus sativus var. oleiformis
EX772895       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD571856       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY918243       --> TTGGACAAATTATCCACCAATGTCTTTATGTTAATAGAATCGTTCACAAT  Raphanus raphanistrum subsp. landra
EY918289       --> TTGGACAAATTATCCACCAATGTCTTTATGTTAATAGAATCGTTCACAAT  Raphanus raphanistrum subsp. landra
EV571301       --> TTGGACAAATTATCCACCAATGTCTTTATGTTAATAGAATCGTTCACAAT  Raphanus raphanistrum subsp. landra
FD565106       --> TTGGACAAATTATCCACCAACGTCTTTATGTTAATAGAATCGTTCACAAT  Raphanus sativus var. oleiformis
EW719154       --> TTGGACAAATTATCCACCAACGTCTTTATGTTAATAGAATCGTTCACAAT  Raphanus sativus var. oleiformis

               501    -    551
UN16228        --> GAACTTTTGCTCCATTAGAGCAACTTCTTCGAAATATTTACGGAG---GC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714635       <-- GAA...............................................
EY922247       <-- GAACTTTTGCTCCATTAGAGCAACTTCTTCGAAATATTTACGGAG---GC
EY922306       <-- GAACTTTTGCTCCATTAGAGCAACTTCTTCGAAATATTTACGGAG---GC
FD965494       <-- GAACTTTTGCTCCATTAGAGCAACTTCTTCGAAATATTTACGGAGACGGC
FY454058       <-- ..................................................
FY453171       <-- ..................................................
EV566092       <-- ..................................................
EW714336       <-- ..................................................
EX772895       <-- ..................................................
FD571856       <-- ..................................................
EY918243       --> GAACTTTTGCTCCATTAGAGCAACTTCTTCGAAATATTTACGGAG---GC
EY918289       --> GAACTTTTGCTCCATTAGAGCAACTTCTTCGAAATATTTACGGAG---GC
EV571301       --> GAACTTTTGCTCCATTAGAGCAACTTCTTCGAAATATTTACGGAGACGGC
FD565106       --> GAACTTTTGCTCCATTAGAGCAACTTCTTCGAAATATTTACGGAGACGGC
EW719154       --> GAACTTTTGCTCCATTAGAGCAACTTCTTCGAAATATTTACGGAGACGGC

               551    -    601
UN16228        --> CTTCCACCATCTTCTCCACAGCCATCTGAGACTTGGCTGTACTTTCTGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714635       <-- ..................................................
EY922247       <-- CTTCCACCATCTTCTCCACAGCCATCTGAGACTTGGCTGTACTTTCTGCC
EY922306       <-- CTTCCACCATCTTCTCCACAGCCATCTGAGACTTGGCTGTACTTTCTGCC
FD965494       <-- CCTCCACCATCTTCTCCACAGCCATCTGAGACTTGGCTGTACTTTCTGCC
FY454058       <-- ..................................................
FY453171       <-- ..................................................
EV566092       <-- ..................................................
EW714336       <-- ..................................................
EX772895       <-- ..................................................
FD571856       <-- ..................................................
EY918243       --> CTTCCACCATCTTCTCCACAGCCATCTGAGACTTGGCTGTACTTTCTGCC
EY918289       --> CTTCCACCATCTTCTCCACAGCCATCTGAGACTTGGCTGTACTTTCTGCC
EV571301       --> CTTCCACCATCTTCTCCACAGCCATCTGAAACTTGGCTGTACTTTCTGCC
FD565106       --> CTTCCACCATCTTCTCCACAGCCATCTGAGACTTGGCTGTACTTTCTGCC
EW719154       --> CTTCCACCATCTTCTCCACAGCCATCTGAAACTTGGCTGTACTTTCTGCC

               601    -    651
UN16228        --> TGAGATTTGAGAATCTCCCGTTCGTTTGCTAATGCTTCAGAAGAAACGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714635       <-- ..................................................
EY922247       <-- TGAGATTTGAGAATCTCCCGTTCGTTTGCTAATGCTTCAGAAGAAACGAG
EY922306       <-- TGAGATTTGAGAATCTCCCGTTCGTTTGCTAATGCTTCAGAAGAAACGAG
FD965494       <-- TGAGATTTGAGAATCTCCCGTTCGTTTGCTAATGCTTCAGAAGAAACGAG
FY454058       <-- ..................................................
FY453171       <-- ..................................................
EV566092       <-- ..................................................
EW714336       <-- ..................................................
EX772895       <-- ..................................................
FD571856       <-- ..................................................
EY918243       --> TGAGATTTGAGAATCTCCCGTTCGTTTGCTAATGCT..............
EY918289       --> TGAGATTTGAGAATCTCCCGTTCGTTTGCTAATGCTTCAGAAGAAACGAG
EV571301       --> TGAGATTTGAGAATCTCCCGTTCGTTTGCTAATGCTTCAGAAGAAACGAG
FD565106       --> TGAGATTTGAGAATCTCCCGTTCGTTTGCTAATGCTTCAGAAGAAACAAG
EW719154       --> TGAAATTTGAGAATCTCCCGTTCGTTTGCTAATGTTTCAGAAGAAACAAG

               651    -    701
UN16228        --> GTCTTTGCTTAAAAATAAAGGCTTTGCTGCTACAACATGCATGGCCATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714635       <-- ..................................................
EY922247       <-- GTCTTTGCTTAAAAATAAAGGCTTTGCTGCTACAACATGCATGGCCATTT
EY922306       <-- GTCTTTGCTTAAAAATAAAGGCTTTGCTGCTACAACATGCATGGCCATTT
FD965494       <-- GTCTTTGCTTAAAAATAAAGGCTTTGCTGCTACAACATGCATGGCCAGTT
FY454058       <-- ..................................................
FY453171       <-- ..................................................
EV566092       <-- ..................................................
EW714336       <-- ..................................................
EX772895       <-- ..................................................
FD571856       <-- ..................................................
EY918243       --> ..................................................
EY918289       --> GTCTTTGCTTAAAAATAAAGGCTTTGCTGCTACAACATGCATGGCCATTT
EV571301       --> GTCTTTGCTTAAAAATAAAGGCTTTGCTGCTACAACATGCATGGCCAGTT
FD565106       --> GTCTTTGCTCAAAAACAAAGGCTTTGCAGCTACAACATGCATGGCCATTT
EW719154       --> GTCTTTGCTCAAAAACAAAGGCTTTGCAGCTACAACATGCATGGCCATTT

               701    -    751
UN16228        --> CTGAGCCTACACGTTGAAGAGCCTCTAGTTGAGTGTTTCCACCTTCTACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714635       <-- ..................................................
EY922247       <-- CTGAGCCTACACGTTGAAGAGCCTCTAGTTGAGTGTTTCCACCTTCTACT
EY922306       <-- CTGAGCCTACACGTTGAAGAGCCTCTAGTTGAGTGTTTCCACCTTCTACT
FD965494       <-- CTGAGCCTACACGTTGAAGAGCCTCTAGTTGAGTGTTTCCACCTTCTACT
FY454058       <-- ................................................CT
FY453171       <-- ..................................................
EV566092       <-- ..................................................
EW714336       <-- ..................................................
EX772895       <-- ..................................................
FD571856       <-- ..................................................
EY918243       --> ..................................................
EY918289       --> CTGAGCCTACACGTTGAAGAGCCTCTAGTTGAGTGTTTCCACCTTCT...
EV571301       --> CTGAGCCTACACGTTGAAGAGCCTCTAGTTGAGTGTTTCCACCTTCTACT
FD565106       --> CTGAGCCTACACGTTGAAGAGCCTCTAGTTGAGTGTTTCCACCTTCTACT
EW719154       --> CTGAGCCTACACGTTGAAGAGCCTCTAGTTGAGTGTTTCCACCTTCTACT

               751    -    801
UN16228        --> TCGAGAGATACAATCCCAGCGATACGACCCAACCC-TGGTTGGGGACTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714635       <-- ..................................................
EY922247       <-- TCGAGAGATACAATCCCAGCGATACGACCCAACCC-TGGCTGGGGACTTG
EY922306       <-- TCGAGAGATACAATCCCAGCGATACGACCCAACCC-TGGCTGGGGACTTG
FD965494       <-- TCGAGAGATACAATCCCAGCTATACGACCCAACCC-TGGCTGGGGACTTG
FY454058       <-- TCGAGAGATACAATCCCAGCGATACGACCCAACCC-TGGTTGGGGACTTG
FY453171       <-- ...AGAGATACAATCCCAGCGATACGACCCAACCCCTGGTTGAGGACTTG
EV566092       <-- ......................................GTTGGGGACTTG
EW714336       <-- ..................................................
EX772895       <-- ..................................................
FD571856       <-- ..................................................
EY918243       --> ..................................................
EY918289       --> ..................................................
EV571301       --> TCGAGAGATACAATCCCAGCTATACGACCCAga.................
FD565106       --> TCGAGAGATACAATCCCAGCGATACGACCCAACCC-TGGTTGGGGACTTG
EW719154       --> TCGAGAGATACAATCCCAGCGATACGACCCAACCC-TGGTTGGGGACTTG

               801    -    851
UN16228        --> TGTGGAGATATGCAGAGAGGACGCCTGTTGAAGATTTTGACATTAAGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714635       <-- ..................................................  Raphanus sativus var. oleiformis
EY922247       <-- TGTGGAGATATGCAGAGAGGACGCCTGTTGAAGATTTTGACATTAAGAAA  Raphanus raphanistrum subsp. landra
EY922306       <-- TGTGGAGATATGCAGAGAGGACGCCTGTTGAAGATTTTGACATTAAGAAA  Raphanus raphanistrum subsp. landra
FD965494       <-- TGTGGAGATATGCAGAGAGGACGCCTGTTGAAGATTTTGACATTAAGAAA  Raphanus raphanistrum subsp. maritimus
FY454058       <-- TGTGGAGATATGCAGAGAGGACGCCTGTTGAAGATTTTGACATCAAGAAA  Raphanus sativus cv GSK3-1
FY453171       <-- TGTGGAGATATGCAGAGAGGACGCCTGTTGAAGATTTTGACATCAAGAAA  Raphanus sativus cv GSK3-1
EV566092       <-- TGTG-AGATATGCAGAGAGGACGCCTGTTGAAGATTT-GACATCAAGAAA  Raphanus raphanistrum subsp. landra
EW714336       <-- ..................................................  Raphanus sativus var. oleiformis
EX772895       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD571856       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY918243       --> ..................................................  Raphanus raphanistrum subsp. landra
EY918289       --> ..................................................  Raphanus raphanistrum subsp. landra
EV571301       --> ..................................................  Raphanus raphanistrum subsp. landra
FD565106       --> TGTGGAGATAGGCAGAGAGGACGCCTGTTGAAGATTTTGACATTAAGAAA  Raphanus sativus var. oleiformis
EW719154       --> TGTGGAGATAGGCAGAGAGGACGCCTGTTGAAGATTTTGACATTAAGAAA  Raphanus sativus var. oleiformis

               851    -    901
UN16228        --> CCTCTCCTAAACTTGACATTCTCTCCCATTATCGCAGCTACTTCTGTAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714635       <-- ..................................................
EY922247       <-- CCTCTCCTAAACTTGACATTCTCTCCCATTATCGCAGCTACTTCTGTAGC
EY922306       <-- CCTCTCCTAAACTTGACATTCTCTCCCATTATCGCAGCTACTTCTGTAGC
FD965494       <-- CCTCTCCTAAACTTGACATTCTCTCCCATTATCGCAGCTACTTCTGTAGC
FY454058       <-- CCTCTCCTAAACTTGACATTCTCTCCCATTATCGCAGCTACTTCTGTAGC
FY453171       <-- CCTCTCCTAAACTTGACATTCTCTCCCATTATCGCAGCTACTTCTGTAGC
EV566092       <-- CCTCTCCTAAACTTGACATTCTCTCCCATAATTGCCGCTACTTCTGTAGC
EW714336       <-- ...tcctTAAACT-GACATTCTCTCCCATTATCGCAGCTACTTCTGTAGC
EX772895       <-- ............cTGACAT-CTCTCCCAT-ATCGCAGCTACTTCTGTAGC
FD571856       <-- ...............................................AGC
EY918243       --> ..................................................
EY918289       --> ..................................................
EV571301       --> ..................................................
FD565106       --> CCTCTC-TAAACTTGACATTCTCTC.........................
EW719154       --> CCTCTCCTAAACTTGACATTCTCTCCCATTATCGCAGCTACTTCTGTAGC

               901    -    951
UN16228        --> AGCGTTTGAAACTGTGGTTTCACCATTCACTTTTGGATGGTCGAGATTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714635       <-- ..................................................
EY922247       <-- AGCGTTTGAAACTGTGGTTTCACCATTCACTTTTGGATGc..........
EY922306       <-- AGCGTTTGAAACTGTGGTTTCACCATTCACTTTTGGATGc..........
FD965494       <-- AGCGTTTGAAACTGTGGTTTCACCATTCACTTTTGGATGGTCGAGATTGA
FY454058       <-- AGCGTTTGAAACTGTGGTTTCACCATTCACTTTTGGATGGTCGAGATTGA
FY453171       <-- AGCGTTTGAAACTGTGGTTTCACCATTCACTTTTGGATGGTCGAGATTGA
EV566092       <-- AGCGTTTGAAACTGTGGTTTCACCATTCACTTTTGGATGGTCGAGATTGA
EW714336       <-- AGCGTTTGAAACTGTGGTTTCACCATTCACTTTTGGATGGTCGAGATTGA
EX772895       <-- AGCGTT-GAAACTGTGGTTTCACCATTCACTTTTG-ATGGTCGAGATTGA
FD571856       <-- AGCGTTTGAAACTGTGGTTTCACCATTCACTTTTGGATGGTCGAGATTGA
EY918243       --> ..................................................
EY918289       --> ..................................................
EV571301       --> ..................................................
FD565106       --> ..................................................
EW719154       --> AGCGTTTGAAACTGTGGTTTCACCATTCACTTTTGGATGGTCGAGATTGA

               951    -   1001
UN16228        --> GCTTCAACTCCTCAAAAAGCTCAGGGCCAAAGGGGAAGACACCAGG-AAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714635       <-- ..................................................  Raphanus sativus var. oleiformis
EY922247       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY922306       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD965494       <-- GCTTCAACTCCTCAAAAAGCTCAGGGCCAAAGGGGAAGACACCAGG-AAC  Raphanus raphanistrum subsp. maritimus
FY454058       <-- GCTTCAACTCCTCAAAAAGCTCAGGGCCAAAGGGGAAGACACCAGG-AAC  Raphanus sativus cv GSK3-1
FY453171       <-- GCTTCAACTCCTCAAAAAGCTCAGGGCCAAAGGGGAAGACACCAGG-AAC  Raphanus sativus cv GSK3-1
EV566092       <-- GCTTCAACTCCTCAAAAAGCTCAGGGCCAAAGGGGAAGACACCAGG-AAC  Raphanus raphanistrum subsp. landra
EW714336       <-- GCTTTAGCTCCTCAAAAAGCTCAGGGCCAAAGGGGAAAACACCAGGGAAC  Raphanus sativus var. oleiformis
EX772895       <-- GCTTTAGCTCCTCAAAAAGCTCAGGGCCAAAGGGGAAGACACCAGG-AAC  Raphanus raphanistrum subsp. landra
FD571856       <-- GCTTCAACTCCTCAAAAAGCTCAGGGCCAAAGGGGAAGACACCAGG-AAC  Raphanus sativus cv Early Scarlet Globe
EY918243       --> ..................................................  Raphanus raphanistrum subsp. landra
EY918289       --> ..................................................  Raphanus raphanistrum subsp. landra
EV571301       --> ..................................................  Raphanus raphanistrum subsp. landra
FD565106       --> ..................................................  Raphanus sativus var. oleiformis
EW719154       --> GCTTTAGCTCCTCAAAAAGCTCAGGGCCAAAGGGGAAAACACCAGG-AAC  Raphanus sativus var. oleiformis

               1001   -   1051
UN16228        --> TTGCTGAGAACTGTTATCAACCAGCAAAGCACGTTTTGCCATAGCTAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714635       <-- ..................................................
EY922247       <-- ..................................................
EY922306       <-- ..................................................
FD965494       <-- TTGCTGAGAACTGTTATCAACCAGCAAAGCACGTTTTGCCATAGCTAAAG
FY454058       <-- TTGCTGAGAACTGTTATCAACCAGCAAAGCACGTTTTGCCATAGCTAAAG
FY453171       <-- TTGCTGAGAACTGTTATCAACCAGCAAAGCACGTTTTGCCATAGCTAAAG
EV566092       <-- TTGCTGAGAACTGTTATCAACCAGCAAAGCACGTTTTGCCATAGCTAAAG
EW714336       <-- TTGCTGAGAACTGTTATCAACCAGCAAAGCACGTTTTGCCATAGCTAAAG
EX772895       <-- TTGCTGAGAACTGTTATCAACCAGCAAAGCACGTTTTGCCATAGCTAAAG
FD571856       <-- TTGCTGAGAACTGTTATCAACCAGCAAAGCACGTTTTGCCATAGCTAAAG
EY918243       --> ..................................................
EY918289       --> ..................................................
EV571301       --> ..................................................
FD565106       --> ..................................................
EW719154       --> TTGCTGAGAACTGTTATCAACCAGCAAAGCACGTTT-GCCATAGC.....

               1051   -   1101
UN16228        --> CC-AAGTACTGGAAGATGTCGTTCCTAGCCACAAAGTCTGTCTCGCAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714635       <-- ..................................................
EY922247       <-- ..................................................
EY922306       <-- ..................................................
FD965494       <-- CC-AAGTACTGGAAGAc.................................
FY454058       <-- CC-AAGTACTGGAAGATGTCGTTCCTAGCCACAAAGTCTGTCTCGCAGTT
FY453171       <-- CC-AAGTACTGGAAGATGTCGTTCCTAGCCACAAAGTCTGTCTCGCAGTT
EV566092       <-- CC-AAGTACTGGAAGATGTCGTTCCTAGCCACAAAGTCTGTCTCGCAGTT
EW714336       <-- CCCAAGTACTGGAAGATGTCGTTCCTAGCCACAAAGTCGGTCTCGCAGTT
EX772895       <-- CC-AAGTACTGGAAGATGTCGTTCCTAGCCACAAAGTCTGTCTCGCAGTT
FD571856       <-- CC-AAGTACTGGAAGATGTCGTTCCTAGCCACAAAGTCTGTCTCGCAGTT
EY918243       --> ..................................................
EY918289       --> ..................................................
EV571301       --> ..................................................
FD565106       --> ..................................................
EW719154       --> ..................................................

               1101   -   1151
UN16228        --> CAGTTCGATAACAGCAACTCTTCCCTCGTTCTGGGCAACAGCAAGCATAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714635       <-- ..................................................
EY922247       <-- ..................................................
EY922306       <-- ..................................................
FD965494       <-- ..................................................
FY454058       <-- CAGTTCGATAACAGCAACTCTTCCCTCGTTCTGGGCAACAGCAAGCATAC
FY453171       <-- CAGTTCGATAACAGCAACTCTTCCCTCGTTCTGGGCAACAGCAAGCATAC
EV566092       <-- CAGTTCGATAACAGCAACTCTTCCCTCGTTCTGGGCAACAGCAAGCATAC
EW714336       <-- CAGTTCGATAACAGC...................................
EX772895       <-- CAGTTCGATAACAGCAACTCTTCCCTCGTTCTGGGCAACAGCAAGCATAC
FD571856       <-- CAGCTCGATAACAGCAACTCTTCCCTCGTTCTGGGCAACCGCAAGCATAC
EY918243       --> ..................................................
EY918289       --> ..................................................
EV571301       --> ..................................................
FD565106       --> ..................................................
EW719154       --> ..................................................

               1151   -   1201
UN16228        --> CCTCTGCAGCTGTCCGTGACGACTTTTTGGAAGCCAGTACTTTGCCTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714635       <-- ..................................................
EY922247       <-- ..................................................
EY922306       <-- ..................................................
FD965494       <-- ..................................................
FY454058       <-- CCTCTGCAGCTGTCCGTGACGACTTTTTGGAAGCCAGTACTTTGCCTCTC
FY453171       <-- CCTCTGCAGCTGTCCGTGACGACTTTTTGGAAGCCAGTACTTTGCCTCTC
EV566092       <-- CCTCTGCAGCTGTCCGTGACGACTTTTTGGAAGCCAGTACTTTCCCTCTC
EW714336       <-- ..................................................
EX772895       <-- CCTCTGCAGCTGTCCGTGACGACTTTTTGGAAGCCAGTACTTTCCCTCTC
FD571856       <-- CCTCTGCAGCTGTCCGTGACGACTTTTTGGAAGCCAGTACTTTGCCTCTC
EY918243       --> ..................................................
EY918289       --> ..................................................
EV571301       --> ..................................................
FD565106       --> ..................................................
EW719154       --> ..................................................

               1201   -   1251
UN16228        --> TTCCTCAAATCCTTCTGAGCAGCCTCAATGTCCCAATTGCATTCAACAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714635       <-- ..................................................
EY922247       <-- ..................................................
EY922306       <-- ..................................................
FD965494       <-- ..................................................
FY454058       <-- TTCCTCAAATCCTTCTGAGCAGCCTCAATGTCCCAATTGCATTCAACAAG
FY453171       <-- TTCCTCAAATCCTTCTGAGCAGCCTCAATGTCCCAATTGCATTCAACAAG
EV566092       <-- TTCCTCAAATCCTTCTGAGCAGCCTCAATGTCCCAATTGCATTCAACAAG
EW714336       <-- ..................................................
EX772895       <-- TTCCTCAAATCCTTCTGAGCAGCCTCAATGTCCCAATTGCATTCAACAAG
FD571856       <-- TTCCTCAAATCCTTCTGAGCAGCCTCAATGTCCCAATTGCATTCAACAAG
EY918243       --> ..................................................
EY918289       --> ..................................................
EV571301       --> ..................................................
FD565106       --> ..................................................
EW719154       --> ..................................................

               1251   -   1301
UN16228        --> AGAAGCCTTAACATCTTTAATAGGAGCACTAGTTCTTTGCCTCAGTTGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714635       <-- ..................................................
EY922247       <-- ..................................................
EY922306       <-- ..................................................
FD965494       <-- ..................................................
FY454058       <-- AGAAGCTTTAACATCTTTAATAGGAGCACTAGTTCTTTGCCTCAGTTTCT
FY453171       <-- AGAAGCTTTAACATCTTTAATAGGAGCACTAGTTCTTTGCCTCAGTTTCT
EV566092       <-- AGAAGCCTTAACATCCTTAATAGGAGCACTAGTTCTTTGCCTCAGTTGCT
EW714336       <-- ..................................................
EX772895       <-- AGAAGCCTTAACATCCTTAATAGGAGCACTAGTTCTTTGCCTCAGTTGCT
FD571856       <-- AGAAGCCTTAACATCTTTGATAGGAGCACTAGTTCTTTGCCTCAGTTGCT
EY918243       --> ..................................................
EY918289       --> ..................................................
EV571301       --> ..................................................
FD565106       --> ..................................................
EW719154       --> ..................................................

               1301   -   1351
UN16228        --> TGATGAGGCTCATCTGGTCAACTCCAGCAGGAGCCTCCGAACTAAAACTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714635       <-- ..................................................
EY922247       <-- ..................................................
EY922306       <-- ..................................................
FD965494       <-- ..................................................
FY454058       <-- TGATGAGGCTCATCTGGTCAACTCCACCAGGAGCCTCCGAACTAAAACTC
FY453171       <-- TGATGAGGCTCATCTGGTCAACTCCACCAGGAGCCTCCGAACTAAAACTC
EV566092       <-- TGATGAGGCTCATCTGGTCAACTCCAGCAGGAGCCTCCGAACTAAAACTC
EW714336       <-- ..................................................
EX772895       <-- TGATGAGGCTCATCTGGTCAACTCCAGCAGGAGCCTCCGAACTAAAACTC
FD571856       <-- TGATGAGGCTCATCTGGTCAACTCCAGCAGGAGCCTCCGAACTAAAACTC
EY918243       --> ..................................................
EY918289       --> ..................................................
EV571301       --> ..................................................
FD565106       --> ..................................................
EW719154       --> ..................................................

               1351   -   1401
UN16228        --> CTCAACAAGTTCCCGAAACCACCAACAGGGCTCCTGTACTGAGACAGACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714635       <-- ..................................................
EY922247       <-- ..................................................
EY922306       <-- ..................................................
FD965494       <-- ..................................................
FY454058       <-- CTCAACAAGTTCCCGAAACCACCAACAGGGCTCCTGTACTGAGACAGACT
FY453171       <-- CTCAACAAGTTCCCGAAACCACCAACAGGGCTCCTGTACTGAGACAGACT
EV566092       <-- CTCAACAAGTTCCCAAACCCACCGACATGGCTTCTGTACTGAGACAGACT
EW714336       <-- ..................................................
EX772895       <-- CTCAACAAGTTCCCAAACCCACCGACATGGCTTCTGTACTGAGACAGACT
FD571856       <-- CTCAACAAGTTCCCGAAACCACCAACAGGGCTCCTGTACTGAGACAGACT
EY918243       --> ..................................................
EY918289       --> ..................................................
EV571301       --> ..................................................
FD565106       --> ..................................................
EW719154       --> ..................................................

               1401   -   1451
UN16228        --> TTCGAATTTGCTTGAGTACTCATTTCCACAGCTGAACCTACGACTAGCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714635       <-- ..................................................
EY922247       <-- ..................................................
EY922306       <-- ..................................................
FD965494       <-- ..................................................
FY454058       <-- TTCGAATTTGCTTGAGTACTCATTTCCACAGCTGAACCTACGACTAGCAC
FY453171       <-- TTCGAATTTGCTTGAGTACTCATTTCCACAGCTGAACCTACGACTAGCAC
EV566092       <-- TTCGAATTTGCTTGAGTACTCATTTCCACAGCTGAACCTACGACTAGCAC
EW714336       <-- ..................................................
EX772895       <-- TTCGAATTTGCTTGAGTACTCATTTCCACAGCTGAACCTACGACTAGCAC
FD571856       <-- CTCGAATTTGCTAGAGTACTCATTTCCACAACTGAACCTACGACTAGCAC
EY918243       --> ..................................................
EY918289       --> ..................................................
EV571301       --> ..................................................
FD565106       --> ..................................................
EW719154       --> ..................................................

               1451   -   1501
UN16228        --> TGTAAAGAAAGACTCCAAGGGGTCGTCTCGCTGCCCTAGAATACGCCATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714635       <-- ..................................................
EY922247       <-- ..................................................
EY922306       <-- ..................................................
FD965494       <-- ..................................................
FY454058       <-- TGTAAAGAAAGACTCCAAGGGGTCGTCTCGCTGCCCTAGAATACGCCATT
FY453171       <-- TGTAAAGAAAGACTCCAAGGGGTCGTCTCGCTGCCCTAGAATACGCCATT
EV566092       <-- TGTAAAGAAAGACTCCAAGGGGTCGTCTCGCTGCCCTAGAATACGCCATT
EW714336       <-- ..................................................
EX772895       <-- TGTAAAGAAAGACTCCAAGGGGTCGTCTCGCTGCCCTAGAATACGCCATT
FD571856       <-- TATAAAGAAAGACTCCAAGGGGTCGTCTCGCTGCCCTAGAATACGCCATT
EY918243       --> ..................................................
EY918289       --> ..................................................
EV571301       --> ..................................................
FD565106       --> ..................................................
EW719154       --> ..................................................

               1501   -   1551
UN16228        --> TTTTTTTCTTTTGCAAAACCGAGGTGTAAGAGTTGCGTTCTTTGCGTCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714635       <-- ..................................................
EY922247       <-- ..................................................
EY922306       <-- ..................................................
FD965494       <-- ..................................................
FY454058       <-- TTTTTTTCTTTTGCAAAACCGAGGTGTAAGAGTTGCGTTCTTTGCGTCGT
FY453171       <-- TTTTTTTCTTTTGCAAAACCGAGGTGTAAGAGTTGCGTTCTTTGCGTCGT
EV566092       <-- TTTTTTTCTTTTGCAAAACCGAGGTGTAAGAGTTGCGTTCTTTGCGTCGT
EW714336       <-- ..................................................
EX772895       <-- TTTTTTTCTTTTGCAAAACCGAGGTGTAAGAGTTGCGTTCTTTGCGTCGT
FD571856       <-- TTCTT---TTTTGCAAAACCGAGGTGTAAGAGTTGCGTTCTTTGCGTCGT
EY918243       --> ..................................................
EY918289       --> ..................................................
EV571301       --> ..................................................
FD565106       --> ..................................................
EW719154       --> ..................................................

               1551   -   1601
UN16228        --> TGGTGAAAATCGATACTAGAAAGAGATCGAGGAGATCGTAGAAATGGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714635       <-- ..................................................
EY922247       <-- ..................................................
EY922306       <-- ..................................................
FD965494       <-- ..................................................
FY454058       <-- TGGTGAAAATCGATACTAGAAAGAGATCGAGGAGATCATAGAAA......
FY453171       <-- TGGTGAAAATCGATACTAGAAAGAGATC......................
EV566092       <-- TGGTGAAAATCGATACTAGAAAGAGATCGAGGAGATCGTAGAAATGGGAG
EW714336       <-- ..................................................
EX772895       <-- TGGTGAAAATCGATACTAGAAAGAGATCGAGGAGATCGTAGAAATGGGAG
FD571856       <-- TGGTGAAAATCGATACTAGAAAGAGATC-AGGAGATCATAGAAATGGGAG
EY918243       --> ..................................................
EY918289       --> ..................................................
EV571301       --> ..................................................
FD565106       --> ..................................................
EW719154       --> ..................................................

               1601   -   1651
UN16228        --> CGACCGATGAGGGATTTGTTTGGTTACTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714635       <-- ..............................
EY922247       <-- ..............................
EY922306       <-- ..............................
FD965494       <-- ..............................
FY454058       <-- ..............................
FY453171       <-- ..............................
EV566092       <-- CGACCcc.......................
EW714336       <-- ..............................
EX772895       <-- CGACCGATGAGGGATTTGTTTGGTTACTCC
FD571856       <-- CGAGGGATGAGGGATT-GTTTGGTTcc...
EY918243       --> ..............................
EY918289       --> ..............................
EV571301       --> ..............................
FD565106       --> ..............................
EW719154       --> ..............................