-1     -     49
UN16231        --> ..AATTTCTAGGGTTTTGCAACACAGAATCGCCGAACGAATC----CA-A
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571728       <-- ..................................................
EX761676       <-- ..................................................
EV544625       <-- ..................................................
EX761548       <-- ..................................................
EX767191       <-- ..................................................
FD935746       <-- ..................................................
EY911656       <-- ..................................................
EY928229       <-- ..................................................
EY903792       <-- ..................................................
FD531062       <-- ..................................................
FD572799       <-- ..................................................
EY943625       <-- ..................................................
FD958724       <-- ..................................................
FD574385       <-- ..................................................
EV549079       --> ggAATTTCTAGGGTTTTGCAACACAGAATCGCCGAACGAATC----CA-A
FD535387       --> ggAATTTCTAGGGTTTTGCAACACAGAATCGCCGAACGAATCAATCCA-A
FD941751       --> ggAATTTCTAGGGTTTTGCAACACAGAATCGCCGAACGAATC----CA-A
EX758119       --> .....ggCTAGGGTTTTGCAACACAGAATCGCCGAACGAATC----CA-A
FD570364       --> .....ggCTAGGGTTTTGCAACACAGAATCGCCGAACGAATC----CA-A
EV566645       --> .......ggAGGGTTTTGCAACACAGAATCGCCGAACGAATC----CA-A
EY947784       --> .......agAGGGTTTTGCAACACAGAATCGCCGAACGAATC----CA-A
FD568459       --> .......ggAGGGTTTTGCAACACAGAATCGCCGAACGAATC----CA-A
FD939683       --> .......ggAGGGTTTTGCAACACAGAATCGCCGAACGAATC----CA-A
EX771572       --> .......................CAGAATCGCCGAACGAATC----AATC
EX905828       --> .................................GAACGAATC----CA-A
EX758282       --> ..................................................
EY915892       --> ..................................................
EY932519       --> ..................................................
FD962109       --> ..................................................

               49     -     99
UN16231        --> CGCCATCATGGGACGAAGACCTGCGAGATGTTACCGTCAGATCAAGGGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571728       <-- ..................................................
EX761676       <-- ..................................................
EV544625       <-- ..................................................
EX761548       <-- ..................................................
EX767191       <-- ..................................................
FD935746       <-- ..................................................
EY911656       <-- ..................................................
EY928229       <-- ..................................................
EY903792       <-- ..................................................
FD531062       <-- ..................................................
FD572799       <-- ..................................................
EY943625       <-- ..................................................
FD958724       <-- ..................................................
FD574385       <-- ..................................................
EV549079       --> CGCCATCATGGGACGAAGACCTGCGAGATGTTACCGTCAGATCAAGGGGA
FD535387       --> CGCCATCGTGGGACGAAGACCTGCGAGATGTTACCGTCAGATCAAGGGGA
FD941751       --> CGCCATCATGGGACGAAGACCTGCGAGATGTTACCGTCAGATCAAGGGGA
EX758119       --> CGCCATCATGGGACGAAGACCTGCGAGATGCTACCGTCAGATCAAGGGGA
FD570364       --> CGCCATCATGGGACGAAGACCTGCGAGATGTTACCGTCAGATCAAGGGGA
EV566645       --> CGCCATCATGGGACGAAGACCTGCGAGATGTTACCGTCAGATCAAGGGGA
EY947784       --> CGCCATCATGGGACGAAGACCTGCGAGATGTTACCGTCAGATCAAGGGGA
FD568459       --> CGCCATCATGGGACGAAGACCTGCGAGATGTTACCGTCAGATCAAGGGGA
FD939683       --> CGCCATCATGGGACGAAGACCTGCGAGATGTTACCGTCAGATCAAGGGGA
EX771572       --> CAACGCCATGGGACGAAGACCTGCGAGATGTTACCGTCAGATCAAGGGGA
EX905828       --> CGCCATCATGGGACGAAGACCTGCGAGATGTTACCGTCAGATCAAGGGGA
EX758282       --> ..................................................
EY915892       --> ..................................................
EY932519       --> ..................................................
FD962109       --> ..................................................

               99     -    149
UN16231        --> AGCCCTACCCGAAATCCCGCTACTGCCGCGGAGTCCCCGACCCCAAGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571728       <-- .............ATCACGATACTGCCGCGGTGTCCCCGACCCCAAGATC
EX761676       <-- .................CGCTACTGCCGCGGAGTCCCGGACCCCAAGATC
EV544625       <-- .............................GGAGTCCCCGACCCCAAGATC
EX761548       <-- ..................................................
EX767191       <-- ..................................................
FD935746       <-- ..................................................
EY911656       <-- ..................................................
EY928229       <-- ..................................................
EY903792       <-- ..................................................
FD531062       <-- ..................................................
FD572799       <-- ..................................................
EY943625       <-- ..................................................
FD958724       <-- ..................................................
FD574385       <-- ..................................................
EV549079       --> AGCCCTACCCGAAATCCCGCTACTGCCGCGGAGTCCCCGACCCCAAGATC
FD535387       --> AGCCCTACCCGAAATCACGATACTGCCGCGGAGTCCCCGACCCCAAGATC
FD941751       --> AGCCCTACCCGAAATCCCGCTACTGCCGCGGAGTCCCCGACCCCAATATC
EX758119       --> AGCCCTACCCGAAATCCCGCTACTGCCGCGGAGTCCCGGACCCCAAGATC
FD570364       --> AGCCCTACCCGAAATCCCGCTACTGCCGCGGAGTCCCCGACCCCAAGATC
EV566645       --> AACCCTACCCGAAATCACGATACTGCCGCGGTGTCCCCGACCCCAAGATC
EY947784       --> AGCCCTACCCGAAATCCCGCTACTGCCGCGGTGTCCCCGACCCCAAGATC
FD568459       --> AGCCCTACCCGAAATCCCGCTACTGCCGCGGAGTCCCCGACCCCAAGATC
FD939683       --> AGCCCTACCCGAAATCCCGCTACTGCCGCGGAGTCCCCGACCCCAAGATC
EX771572       --> AGCCCTACCCGAAATCCCGCTACTGCCGCGGAGTCCCTGACCCGAAGATC
EX905828       --> AGCCCTACCCAAAATCCCGCTACTGCCGCGGTGTCCCCGACCCCAAGATC
EX758282       --> .....................................gGACCCCAAGATC
EY915892       --> ........................................gCCCAAGATC
EY932519       --> ..................................................
FD962109       --> ..................................................

               149    -    199
UN16231        --> CGAATCTACGACGTCGGGATGAAGAAGAAAGGAGTCGACGAGTTCCCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571728       <-- CGAATCTACGACGTCGGGATGAAGAAGAAAGGAGTCGACGAGTTCCCTTT
EX761676       <-- CGAATCTACGACGTCGGGATGAAGAAGAAAGGAGTCGACGAGTTCCCTTT
EV544625       <-- CGAATCTACGACGTCGGGATGAGGAAGAAAGGAGTCGACGAGTTCCCTTT
EX761548       <-- ..............CGGGATGAAGAAGAAAGGAGTCGACGAGTTCCCTTT
EX767191       <-- ...............................GAGTCGACGAGTTCCCTTT
FD935746       <-- ..................................................
EY911656       <-- ..................................................
EY928229       <-- ..................................................
EY903792       <-- ..................................................
FD531062       <-- ..................................................
FD572799       <-- ..................................................
EY943625       <-- ..................................................
FD958724       <-- ..................................................
FD574385       <-- ..................................................
EV549079       --> CGAATCTACGACGTCGGGATGAGGAAGAAAGGAGTCGACGAGTTCCCTTT
FD535387       --> CGAATCTACGACGTCGGGATGAAGAAGAAAGGAGTCGACGAGTTCCCTTT
FD941751       --> CGAATCTACGACGTCGGGATGAAGAAGAAAGGAGTCGACGAGTTCCCTTT
EX758119       --> CGAATCTACGACGTCGGGATGAAGAAGAAAGGAGTCGACGAGTTCCCTTT
FD570364       --> CGAATCTACGACGTCGGGATGAAGAAGAAAGGAGTCGACGAGTTCCCTTT
EV566645       --> CGAATCTACGACGTCGGGATGAAGAAGAAAGGAGTCGACGAGTTCCCTTT
EY947784       --> CGAATCTACGACGTCGGGATGAAGAAGAAAGGAGTCGACGAGTTCCCTTT
FD568459       --> CGAATCTACGACGTCGGGATGAAGAAGAAAGGAGTCGACGAGTTCCCTTT
FD939683       --> CGAATCTACGACGTCGGGATGAAGAAGAAAGGAGTCGACGAGTTCCCTTT
EX771572       --> CGAATCTACGACGTCGGGATGAAGAAGAAAGGAGTCGACGAGTTCCCTTT
EX905828       --> CGAATCTACGACGTCGGGATGAAGAAGAAAGGAGTCGACGAGTTCCCTTT
EX758282       --> CGAATCTACGACGTCGGGATGAAGAAGAAAGGAGTCGACGAGTTCCCTTT
EY915892       --> CGAATCTACGACGTCGGGATGAAGAAGAAAGGAGTCGACGAGTTCCCTTT
EY932519       --> .......ggGACGTCGGGATGAAGAAGAAAGGAGTCGACGAGTTCCCTTT
FD962109       --> ..................................................

               199    -    249
UN16231        --> CTGCGTCCACCTCGTCTCCTGGGAGAAAGAAAACGTCTCCAGCGAAGCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571728       <-- CTGCGTCCACCTCGTCTCCTGGGAGAAAGAAAACGTCTCCAGCGAAGCCC  Raphanus raphanistrum subsp. landra
EX761676       <-- CTGCGTCCACCTCGTCTCGTGGGAGAAAGAAAACGTCTCCAGCGAGGCCC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV544625       <-- CTGCGTCCACCTCGTCTCCTGGGAGAAAGAAAACGTCTCCAGCGAAGCCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX761548       <-- CTGCGTCCACCTCGCCTCGTGGGAGAAAGAAAACGTCTCCAGCGAGGCCC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX767191       <-- CTGCGTCCACCTCGTCTCGTGGGAGAAAGAAAACGTCTCCAGCGAAGCCC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD935746       <-- ..........................AAGAAAACGTCTCCAGCGAAGCCC  Raphanus sativus var. oleiformis
EY911656       <-- ...............................AACGTCTCCAGCGAAGCCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY928229       <-- ..................................................  Raphanus sativus var. oleiformis
EY903792       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531062       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD572799       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY943625       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD958724       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD574385       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV549079       --> CTGCGTCCACCTCGTCTCCTGGGAGAAAGAAAACGTCTCCAGCGAAGCCC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD535387       --> CTGCGTCCACCTCGTCTCCTGGGAGAAAGAGAACGTCTCCAGCGAAGCCC  Raphanus raphanistrum subsp. maritimus
FD941751       --> CTGCGTCCACCTCGTCTCCTGGGAGAAAGAAAACGTCTCCAGCGAAGCCC  Raphanus sativus var. oleiformis
EX758119       --> CTGCGTCCACCTCGCCTCGTGGGAGAAAGAAAACGTCTCCAGCGAGGCCC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD570364       --> CTGCGTCCACCTCGTCTCCTGGGAGAAAGAAAACGTCTCCAGCGAAGCCC  Raphanus sativus cv Early Scarlet Globe
EV566645       --> CTGCGTCCACCTCGTCTCCTGGGAGAAAGAAAACGTCTCCAGCGAAGCCC  Raphanus raphanistrum subsp. landra
EY947784       --> CTGCGTCCACCTCGTCTCCTGGGAGAAAGAAAACGTCTCCAGCGAAGCCC  Raphanus sativus cv Rat-Tail Radish #3870
FD568459       --> CTGCGTCCACCTCGTCTCCTGGGAGAAAGAAAACGTCTCCAGCGAAGCCC  Raphanus sativus cv Early Scarlet Globe
FD939683       --> CTGCGTCCACCTCGTCTCCTGGGAGAAAGAAAACGTCTCCAGCGAAGCCC  Raphanus sativus var. oleiformis
EX771572       --> CTGCGTCCACCTCGTCTCCTGGGAGAAAGAAAACGTCTCCAGCGAAGCCC  Raphanus raphanistrum subsp. landra
EX905828       --> CTGCGTCCACCTCGTCTCCTGGGAGAAAGAAAACGTCTCCAGCGAAGCCC  Raphanus sativus cv Rat-Tail Radish #3870
EX758282       --> CTGCGTCCACCTCGTCTCGTGGGAGAAAGAAAACGTCTCCAGCGAGGCCC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY915892       --> CTGCGTCCACCCCGTCTCGTGGGAGAAAGAAAACGTCTCCAGCGAAGCCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY932519       --> CTGCGTCCACCTCGTCTCCTGGGAGAAAGAAAACGTCTCCAGCGAAGCCC  Raphanus sativus var. oleiformis
FD962109       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               249    -    299
UN16231        --> TCGAGGCCGCGCGTATCGCCTGCAACAAGTACATGGTGAAATCCGCAGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571728       <-- TCGAGGCCGCGCGTATCGCCTGCAACAAGTACATGGTGAAATCCGCAGGG
EX761676       <-- TCGAGGCGGCGCGTATCGCCTGCAACAAGTACATGGTGAAATCCGCAGGG
EV544625       <-- TCGAGGCCGCGCGTATCGCCTGCAACAAGTACATGGTGAAATCCGCAGGG
EX761548       <-- TCGAGGCGGCGCGTATCGCCTGCAACAAGTACATGGTGAAATCCGCAGGG
EX767191       <-- TCGAGGCCGCGCGTATCGCCTGCAACAAGTACATGGTGAAATCCGCAGGG
FD935746       <-- TCGAGGCCGCGCGTATCGCCTGCAACAAGTACATGGTGAAATCCGCAGGG
EY911656       <-- TCGAGGCCGCGCGTATCGCCTGCAACAAGTACATGGTGAAATCCGCAGGG
EY928229       <-- .....GCCGCGCGTATCGCCTGCAACAAGTACATGGTGAAATCCGCAGGG
EY903792       <-- ..................................................
FD531062       <-- ..................................................
FD572799       <-- ..................................................
EY943625       <-- ..................................................
FD958724       <-- ..................................................
FD574385       <-- ..................................................
EV549079       --> TCGAGGCCGCGCGTATCGCCTGCAACAAGTACATGGTGAAATCCGCAGGG
FD535387       --> TCGAGGCCGCGCGTATCGCCTGCAACAAGTACATGGTGAAATCCGCAGGG
FD941751       --> TCGAGGCCGCGCGTATCGCCTGCAACAAGTACATGGTGAAATCCGCAGGG
EX758119       --> TCGAGGCGGCGCGTATCGCCTGCAACAAGTACATGGTGAAATCCGCAGGG
FD570364       --> TCGAGGCCGCGCGTATCGCCTGCAACAATTACATGGTGAAATCCGCAGGG
EV566645       --> TCGAGGCCGCGCGTATCGCCTGCAACAAGTACATGGTGAAATCCGCAGGG
EY947784       --> TCGAGGCCGCGCGTATCGCCTGCAACAAGTACATGGTGAAATCCGCAGGG
FD568459       --> TCGAGGCCGCGCGTATCGCCTGCAACAAGTACATGGTGAAATCCGCAGGG
FD939683       --> TCGAGGCCGCGCGTATCGCCTGCAACAAGTACATGGTGAAATCCGCAGGG
EX771572       --> TCGAGGCCGCGCGTATCGCCTGCAACAAGTACATGGTGAAATCCGCAGGG
EX905828       --> TCGAGGCCGCGCGTATCGCCTGCAACAAGTACATGGTGAAATCCGCAGGG
EX758282       --> TCGAGGCGGCGCGTATCGCCTGCAACAAGTACATGGTGAAATCCGCAGGG
EY915892       --> TCGAGGCCGCGCGTATCGCCTGCAACAAGTACATGGTGAAATCCGCAGGG
EY932519       --> TCGAGGCCGCGCGTATCGCCTGCAACAAGTACATGGTGAAATCCGCAGGG
FD962109       --> ..................................................

               299    -    349
UN16231        --> AAAGATGCCTTCCACTTGAGGATTAGGGTTCATCCTTTCCATGTGTTGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571728       <-- AAAGACGCCTTCCACTTGAGGATTAGGGTTCATCCTTTCCATGTGTTGCG  Raphanus raphanistrum subsp. landra
EX761676       <-- AAAGACGCCTTCCACCTGAGGATTAGGGTTCATCCTTTCCACGTGTTGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV544625       <-- AAAGATGCCTTCCACTTGAGGATTAGGGTTCACCCTTTCCATGTGTTGCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX761548       <-- AAAGACGCCTTCCACCTGAGGATTAGGGTTCATCCTTTCCACGTGTTGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX767191       <-- AAAGACGCCTTCCACTTGAGGATTAGGGTTCATCCTTTCCATGTGTTGCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD935746       <-- AAAGATGCCTTCCACTTGAGGATTAGGGTTCACCCTTTCCATGTGTTGCG  Raphanus sativus var. oleiformis
EY911656       <-- AAAGACGCCTTCCACTTGAGGATTAGGGTTCATCCTTTCCATGTGTTGCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY928229       <-- AAAGATGCCTTCCACTTGAGGATTAGGGTTCACCCTTTCCATGTGTTGCG  Raphanus sativus var. oleiformis
EY903792       <-- ...................GGATTAGGGTTCATCCTTTCCACGTGTTGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531062       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD572799       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY943625       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD958724       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD574385       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV549079       --> AAAGATGCCTTCCACTTGAGGATTAGGGTTCACCCTTTCCATGTGTTGCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD535387       --> AAAGATGCTTTCCACTTGAGGATTAGGGTTCATCCTTTCCATGTGTTGCG  Raphanus raphanistrum subsp. maritimus
FD941751       --> AAAGATGCCTTCCACTTGAGGATTAGGGTTCACCCTTTCCATGTGTTGCG  Raphanus sativus var. oleiformis
EX758119       --> AAAGACGCCTTCCACCTGAGGATTAGGGTTCATCCTTTCCACGTGTTGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD570364       --> AAAGATGCCTTCCACTTGAGGATTAGGGTTCACCCTTTCCATGTGTTGCG  Raphanus sativus cv Early Scarlet Globe
EV566645       --> AAAGACGCCTTCCACTTGAGGATTAGGGTTCATCCTTTCCATGTGTTGCG  Raphanus raphanistrum subsp. landra
EY947784       --> AAAGATGCCTTCCACTTGAGGATTAGGGTTCACCCTTTCCATGTGTTGCG  Raphanus sativus cv Rat-Tail Radish #3870
FD568459       --> AAAGATGCCTTCCACTTGAGGATTAGGGTTCACCCTTTCCATGCGTTGCG  Raphanus sativus cv Early Scarlet Globe
FD939683       --> AAAGATGCCTTCCACTTGAGGATTAGGGTTCACCCTTTCCATGTGTTGCG  Raphanus sativus var. oleiformis
EX771572       --> AAAGACGCCTTCCACTTGAGGATTAGGGTTCATCCTTTCCATGTGTTGCG  Raphanus raphanistrum subsp. landra
EX905828       --> AAAGATGCCTTCCACTTGAGGATTAGGGTTCACCCTTTCCATGTGTTGCG  Raphanus sativus cv Rat-Tail Radish #3870
EX758282       --> AAAGACGCCTTCCACCTGAGGATTAGGGTTCATCCTTTCCACGTGTTGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY915892       --> AAAGACGCCTTCCACTTGAGGATTAGGGTTCATCCTTTCCATGTGTTGCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY932519       --> AAAGATGCCTTCCACTTGAGGATTAGGGTTCACCCTTTCCATGTGTTGCG  Raphanus sativus var. oleiformis
FD962109       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               349    -    399
UN16231        --> TATCAACAAGATGCTTTCGTGCGCCGGAGCTGATAGGCTTCAGACTGGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571728       <-- TATCAACAAGATGCTTTCGTGCGCCGGAGCTGATAGGCTTCAGACTGGTA  Raphanus raphanistrum subsp. landra
EX761676       <-- TATCAACAAGATGCTTTCGTGCGCCGGAGCTGATAGGCTTCAGACTGGTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV544625       <-- TATCAACAAGATGCTTTCGTGCGCCGGAGCCGATAGGCTTCAGACTGGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX761548       <-- TATCAACAAGATGCTTTCGTGCGCCGGAGCTGATAGGCTTCAGACTGGTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX767191       <-- TATCAACAAGATGCTTTCGTGCGCTGGAGCTGATAGGCTTCAGACTGGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD935746       <-- TATCAACAAGATGCTTTCGTGCGCCGGAGCCGATAGGCTTCAGACTGGTA  Raphanus sativus var. oleiformis
EY911656       <-- TATCAACAAGATGCTTTCGTGCGCTGGAGCTGATAGGCTTCAGACTGGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY928229       <-- TATCAACAAGATGCTTTCGCGCGCCGGAGCCGATAGGCTTCAGACTGGTA  Raphanus sativus var. oleiformis
EY903792       <-- TATCAACAAGATGCTTTCGTGCGCTGGAGCTGATAGGCTTCAGACTGGTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531062       <-- ................................ATAGGCTTCAGACTGGTA  Raphanus raphanistrum subsp. maritimus
FD572799       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY943625       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD958724       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD574385       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV549079       --> TATCAACAAGATGCTTTCGTGCGCCGGAGCCGATAGGCTTCAGACTGGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD535387       --> TATCAACAAGATGCTTTCGTGCGCCGGAGCTGATAGGCTTCAGACTGGTA  Raphanus raphanistrum subsp. maritimus
FD941751       --> TATCAACAAGATGCTTTCGTGCGCCGGAGCCGATAGGCTTCAGACTGGTA  Raphanus sativus var. oleiformis
EX758119       --> TATCAACAAGATGCTTTCGTGCGCCGGAGCTGATAGGCTTCAGACTGGTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD570364       --> TATCAACAAGATGCTTTCGTGCGCCGGAGCCGATAGGCTTCAGACTGGTA  Raphanus sativus cv Early Scarlet Globe
EV566645       --> TATCAACAAGATGCTTTCGTGCGCCGGAGCTGATAGGCTTCAGACTGGTA  Raphanus raphanistrum subsp. landra
EY947784       --> TATCAACAAGATGCTTTCGTGCGCCGGAGCCGATAGGCTTCAGACTGGTA  Raphanus sativus cv Rat-Tail Radish #3870
FD568459       --> TATCAACAAGATGCTTTCGTGCGCCGGAGCCGATAGGCTTCAGACTGGTA  Raphanus sativus cv Early Scarlet Globe
FD939683       --> TATCAACAAGATGCTTTCGTGCGCCGGAGCCGATAGGCTTCAGACTGGTA  Raphanus sativus var. oleiformis
EX771572       --> TATCAACAAGATGCTTTCGTGCGCCGGAGCTGATAGGCTTCAGACTGGTA  Raphanus raphanistrum subsp. landra
EX905828       --> TATCAACAAGATGCTTTCGTGCGCCGGAGCCGATAGGCCTCAGACTGGTA  Raphanus sativus cv Rat-Tail Radish #3870
EX758282       --> TATCAACAAGATGCTTTCGTGCGCCGGAGCTGATAGGCTTCAGACTGGTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY915892       --> TATCAACAAGATGCTTTCGTGCGCTGGAGCTGATAGGCTTCAGACTGGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY932519       --> TATCAACAAGATGCTTTCGCGCGCCGGAGCCGATAGGCTTCAGACTGGTA  Raphanus sativus var. oleiformis
FD962109       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               399    -    449
UN16231        --> TGAGAGGCGCCTTTGGTAAGGCGCTGGGGACTTGCGCTAGGGTTGCGATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571728       <-- TGAGAGGCGCGTTCGGTAAGGCGCTGGGGACTTGCGCTAGGGTTGCGATT  Raphanus raphanistrum subsp. landra
EX761676       <-- TGAGAGGTGCGTTTGGTAAGGCGCTGGGGACTTGTGCTAGGGTTGCGATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV544625       <-- TGAGAGGCGCCTTTGGTAAGGCGCTGGGGACTTGCGCTAGGGTTGCGATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX761548       <-- TGAGAGGTGCGTTTGGTAAGGCGCTGGGGACTTGTGCTAGGGTTGCGATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX767191       <-- TGAGAGGCGCTTTCGGTAAGGCGCTGGGGACTTGTGCTAGGGTTGCGATT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD935746       <-- TGAGAGGCGCCTTTGGTAAGGCGCTGGGGACTTGCGCTAGGGTTGCGATT  Raphanus sativus var. oleiformis
EY911656       <-- TGAGAGGCGCTTTCGGTAAGGCGTTGGGGACTTGTGCTAGGGTTGCGATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY928229       <-- TGAGAGGCGCCTTTGGTAAGGCGCTGGGGACTTGCGCTAGGGTTGCGATT  Raphanus sativus var. oleiformis
EY903792       <-- TGAGAGGGGCTTTTGGTAGGGCGCTGGGGACTTGCGCTAGGGTTGCGATT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531062       <-- TGAGAGGCGCGTTCGGGAAGGCGCTGGGGACTTGCGCTAGGGTTGCGATT  Raphanus raphanistrum subsp. maritimus
FD572799       <-- ..........CTTTGGTAAGGCGCTGGGGACTTGCGCTAGGGTTGCGATT  Raphanus sativus cv Early Scarlet Globe
EY943625       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD958724       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD574385       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV549079       --> TGAGAGGCGCCTTTGGTAAGGCGCTGGGGACTTGCGCTAGGGTTGCGATT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD535387       --> TGAGAGGCGCGTTCGGGAAGGCGCTGGGGACTTGCGCTAGGGTTGCGATT  Raphanus raphanistrum subsp. maritimus
FD941751       --> TGAGAGGCGCCTTTGGTAAGGCGCTGGGGACTTGCGCTAGGGTTGCGATT  Raphanus sativus var. oleiformis
EX758119       --> TGAGAGGTGCGTTTGGTAAGGCGCTGGGGACTTGTGCTAGGGTTGCGATT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD570364       --> TGAGAGGCGCCTTTGGTAAGGCGCTGGGGACTTGCGCTAGGGTTGCGATT  Raphanus sativus cv Early Scarlet Globe
EV566645       --> TGAGAGGCGCGTTCGGTAAGGCGCTGGGGACTTGCGCTAGGGTTGCGATT  Raphanus raphanistrum subsp. landra
EY947784       --> TGAGAGGCGCCTTTGGTAAGGCGCTGGGGACTTGCGCTAGGGTTGCGATT  Raphanus sativus cv Rat-Tail Radish #3870
FD568459       --> TGAGAGGCGCCTTTGGTAAGGCGCTGGGGACTTGCGCTAGGGTTGCGATT  Raphanus sativus cv Early Scarlet Globe
FD939683       --> TGAGAGGCGCCTTTGGTAAGGCGCTGGGGACTTGCGCTAGGGTTGCGATT  Raphanus sativus var. oleiformis
EX771572       --> TGAGAGGCGCGTTCGGAAAGGCGCTGGGGACTTGTGCTAGGGTTGCGATT  Raphanus raphanistrum subsp. landra
EX905828       --> TGAGAGGCGCCTTTGGTAAGGCGCTGGGGACTTGCGCTAGGGTTGCGATT  Raphanus sativus cv Rat-Tail Radish #3870
EX758282       --> TGAGAGGTGCGTTTGGTAAGGCGCTGGGGACTTGTGCTAGGGTTGCGATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY915892       --> TGAGAGGCGCTTTCGGTAAGGCGTTGGGGACTTGTGCTAGGGTTGCGATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY932519       --> TGAGAGGCGCCTTTGGTAAGGCGCTGGGGACTTGCGCTAGGGTTGCGATT  Raphanus sativus var. oleiformis
FD962109       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               449    -    499
UN16231        --> GGGCAGGTGCTTTTGTCTGTGAGGTGTAAGGATAACCATGGGGCTCATGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571728       <-- GGGCAGGTGCTTTTGTCTGTGAGGTGTAAGGATAACCATGGGGCTCATGC
EX761676       <-- GGGCAGGTGCTTTTGTCTGTGAGGTGTAAGGATAACCATGGGGCTCATGC
EV544625       <-- GGGCAGGTGCTTTTGTCTGTGAGGTGTAAGGATAACCATGGGGCTCATGC
EX761548       <-- GGGCAGGTGCTTTTGTCTGTGAGGTGTAAGGATAACCATGGGGCTCATGC
EX767191       <-- GGGCAGGTGCTTTTGTCTGTGAGGTGTAAGGATAACCATGGGGCTCATGC
FD935746       <-- GGGCAGGTGCTTTTGTCTGTGAGGTGTAAGGATAACCATGGGGCTCATGC
EY911656       <-- GGGCAGGTGCTTTTGTCTGTGAGGTGTAAGGATAACCATGGGGCTCATGC
EY928229       <-- GGGCAGGTGCTTTTGTCTGTGAGGTGTAAGGATAACCATGGGGCTCATGC
EY903792       <-- GGGCAGGTGCTTTTGTCTGTGAGGTGTAAGGATAACCATGGGGCTCATGC
FD531062       <-- GGGCAGGTGCTTTTGTTTGTGAGGTGTAAGGATAACCATGGGGCTCATGC
FD572799       <-- GGGCAGGTGCTTTTGTCTGTGAGGTGTAAGGATAACCATGGGGCTCATGC
EY943625       <-- ....................GAGGTGTAAGGATAACCATGGGGCGCATGC
FD958724       <-- ..................................................
FD574385       <-- ..................................................
EV549079       --> GGGCAGGTGCTTTTGTCTGTGAGGTGTAAGGATAACCATGGGGCTCATGC
FD535387       --> GGGCAGGTGCTTTTGTCTGTGAGGTGTAAGGATAACCATGGGGCTCATGC
FD941751       --> GGGCAGGTGCTTTTGTCTGTGAGGTGTAAGGATAACCATGGGGCGCATGC
EX758119       --> GGGCAGGTGCTTTTGTCTGTGAGGTGTAAGGATAACCATGGGGCTCATGC
FD570364       --> GGGCAGGTGCTTTTGTCTGTGAGGCGTAAGGATAACCATGGGGCTCATGC
EV566645       --> GGGCAGGTGCTTTTGTCTGTGAGGTGTAAGGATAACCATGGGGCTCATGC
EY947784       --> GGGCAGGTGCTTTTGTCTGTGAGGTGTAAGGATAACCATGGGGCGCATGC
FD568459       --> GGGCAGGTGCTTTTGTCTGTGAGGTGTAAGGATAACCATGGGGCTCATGC
FD939683       --> GGGCAGGTGCTTTTGTCTGTGAGGTGTAAGGATAACCATGGGGCTCATGC
EX771572       --> GGGCAGGTGCTTTTGTCTGTGAGGTGTAAGGATAACCATGGGGCTCATGC
EX905828       --> GGGCAGGTGCTTTTGTCTGTGAGGTGTAAGGATAACCATGGGGCTCATGC
EX758282       --> GGGCAGGTGCTTTTGTCTGTGAGGTGTAAGGATAACCATGGGGCTCATGC
EY915892       --> GGGCAGGTGCTTTTGTCTGTGAGGTGTAAGGATAACCATGGGGCTCATGC
EY932519       --> GGGCAGGTGCTTTTGTCTGTGAGGTGTAAGGATAACCATGGGGCTCATGC
FD962109       --> ..................................................

               499    -    549
UN16231        --> TCAGGAGGCGTTGAGGAGGGCTAAGTTTAAGTTCCCTGGGCGTCAGAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571728       <-- TCAGGAGGCGCTGAGGAGGGCTAAGTTTAAGTTCCCTGGGCGTCAGAAGA  Raphanus raphanistrum subsp. landra
EX761676       <-- TCAGGAGGCGTTGAGGAGGGCTAAGTTTAAGTTCCCTGGGCGTCAGAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV544625       <-- TCAGGAGGCGTTGAGGAGGGCGAAGTTTAAGTTCCCTGGGCGTCAGAAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX761548       <-- TCAGGAGGCGTTGAGGAGGGCTAAGTTTAAGTTCCCTGGGCGTCAGAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX767191       <-- TCAGGAGGCGTTGAGGAGGGCTAAGTTTAAGTTCCCTGGGCGTCAGAAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD935746       <-- TCAGGAGGCGTTGAGGAGGGCGAAGTTTAAGTTCCCTGGGCGTCAGAAGA  Raphanus sativus var. oleiformis
EY911656       <-- TCAGGAGGCGTTGAGGAGGGCTAAGTTTAAGTTCCCTGGGCGTCAGAAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY928229       <-- TCAGGAGGCGTTGAGGAGGGCGAAGTTTAAGTTCCCTGGGCGTCAGAAGA  Raphanus sativus var. oleiformis
EY903792       <-- TCAGGAGGCGTTGAGGAGGGCTAAGTTTAAGTTCCCTGGGCGTCAGAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531062       <-- TCAGGAGGCGCTGAGGAGGGCTAAGTTTAAGTTCCCTGGGCGTCAGAAGA  Raphanus raphanistrum subsp. maritimus
FD572799       <-- TCAGGAGGCGTTGAGGAGGGGGAAGTTTAAGTTCCCTGGGCGTCAGAAGA  Raphanus sativus cv Early Scarlet Globe
EY943625       <-- TCAGGAGGCGCTGAGGAGGGTTAAGTTTAAGTTCCCTGGGCGTCAGAAGA  Raphanus sativus cv Rat-Tail Radish #3870
FD958724       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD574385       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV549079       --> TCAGGAGGCGTTGAGGAGGGCGAAGTTTAAGTTCCCTGGGCGTCAGAAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD535387       --> TCAGGAGGCGCTGAGGAGGGCTAAGTTTAAGTTCCCTGGGCGTCAGAAGA  Raphanus raphanistrum subsp. maritimus
FD941751       --> TCAGGAGGCGCTGAGG--GGCTAAGTTTAAGTTCCCTGGGCGCCAGAAGA  Raphanus sativus var. oleiformis
EX758119       --> TCAGGAGGCGTTGAGGAGGGCTAAGTTTAAGTTCCCTGGGCGTCAGAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD570364       --> TCAGGAGGCGTTGAGGAGGGCGAAGTTTAAGTTCCCTGGGCGTCAGAAGA  Raphanus sativus cv Early Scarlet Globe
EV566645       --> TCAGGAGGCGCTGAGGAGGGCTAAGTTTAAGTTCCCTGGGCGTCAGAAGA  Raphanus raphanistrum subsp. landra
EY947784       --> TCAGGAGGCGCTGAGGAGGGCTAAGTTTAAGTTCCCTGGGCGTCAGAAGA  Raphanus sativus cv Rat-Tail Radish #3870
FD568459       --> TCAGGAGGCGTTGAGGAGGGCGAAGTTTAAGTTCTCTGGGCGTCAGAAGA  Raphanus sativus cv Early Scarlet Globe
FD939683       --> TCAGGAGGCGTTGAGGAGGGCGAAGTTTAAGTTCCCTGGG..........  Raphanus sativus var. oleiformis
EX771572       --> TCAGGAGGCGCTGAGGAGGGCTAAGTTTAAGTTCCCTGGGCGTCAGAAGA  Raphanus raphanistrum subsp. landra
EX905828       --> TCAGGAGGCGTTGAGGAGGGCGAAGTTTGAGTTCCCTGGGCGTCAGAAGA  Raphanus sativus cv Rat-Tail Radish #3870
EX758282       --> TCAGGAGGCGTTGAGGAGGGCTAAGTTTAAGTTCCCTGGGCGTCAGAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY915892       --> TCAGGAGGCGTTGAGGAGGGCTAAGTTTAAGTTCCCTGGGCGTCAGAAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY932519       --> TCAGGAGGCGTTGAGGAGGGCGAAGTTTAAGTTCCCTGGGCGTCAGAAGA  Raphanus sativus var. oleiformis
FD962109       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               549    -    599
UN16231        --> TTATTGTTAGCAGGAAATGGGGTTTCACTAAGTTCAACCGTGCTGATTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571728       <-- TTATTGTTAGCAGGAAATGGGGTTTCACTAAGTTCAACCGTGCTGATTAC
EX761676       <-- TTATTGTTAGCAGGAAATGGGGTTTCACTAAGTTCAACCGTGCTGATTAC
EV544625       <-- TTATTGTTAGCAGGAAATGGGGTTTCACTAAGTTCAACCGTGCTGATTAC
EX761548       <-- TTATTGTTAGCAGGAAATGGGGTTTCACTAAGTTCAACCGTGCTGATTAC
EX767191       <-- TTATTGTTAGCAGGAAATGGGGTTTCACTAAGTTCAACCGTGCTGATTAC
FD935746       <-- TTATTGTTAGCAGGAAATGGGGTTTCACTAAGTTCAACCGTGCTGATTAC
EY911656       <-- TTATTGTTAGCAGGAAATGGG-TTTCACTAAGTTCAACCGTGCTGATTAC
EY928229       <-- TTATTGTTAGCAGGAAATGGGGTTTCACTAAGTTCAACCGTGCTGATTAC
EY903792       <-- TTATTGTTAGCAGGAAATGGGGTTTCACTAAGTTCAACCGTGCTGATTAC
FD531062       <-- TTATTGTTAGCAGGAAATGGGGTTTCACTAAGTTCAACCGTGCTGATTAC
FD572799       <-- TTATTGTTAGCAGGAAATGGGGTTTCATTAAGTTCAACCGTGCTGATTAC
EY943625       <-- TTATTGTTAGCAGGAAATGGGGTTTCACTAAGTTCAACCGTGCTGATTAC
FD958724       <-- .......gAGCAGGAAATGGGGTTTCACTAAGTTCAACCGTGCTGATTAC
FD574385       <-- ..................................................
EV549079       --> TTATTGTTAGCAGGAAATGGGGTTTCACTAAGTTCAACCGTGCTGATTAC
FD535387       --> TTATTGTTAGCAGGAGATGGGGTTTCACTAAGTTCAACCGTGCTGATTAC
FD941751       --> TTATTGTTAGCAGGAAATGGGGTTTCACTAAGTTCAACCGTGCTGATTAC
EX758119       --> TTATTGTTAGCAGGAAATGGGGTTTCACTAAGTTCAACCGTGCTGATTAC
FD570364       --> TTATTGTTAGCAGGAAATGGGGTTTCACTAAGTTCAACCGTGCTGATTAC
EV566645       --> TTATTGTTAGCAGGAAATGGGGTTTCACTAAGTTCAACCGTGCTGATTAC
EY947784       --> TTATTGTTAGCAGGAAATGGGGTTTCACTAAGTTCAACCGTGCTGATTAC
FD568459       --> TTATTGTTAGCAGGAAATGGGGTTTCACTAAGTTCAACCGTGCTGATTAC
FD939683       --> ..................................................
EX771572       --> TTATTGTTAGCGGGAAATGGGGTTTCACTAAGTTCAACCGTGCTGATTAC
EX905828       --> TTATTGTTAGCAGGAAATGGGGTTTCACTAAGTTCAACCGTGCTGATTAC
EX758282       --> TTATTGTTAGCAGGAAATGGGGTTTCACTAAGTTCAACCGTGCTGATTAC
EY915892       --> TTATTGTTAGCAGGAAATGGG-TTTCACTAAGTTCAACCGTGCTGATTAC
EY932519       --> TTATTGTTAGCAGGAAATGGGGTTTCACTAAGTTCAACCGTGCTGATTAC
FD962109       --> .......gAGCAGGAAATGGGGTTTCACTAAGTTCAACCGTGCTGATTAC

               599    -    649
UN16231        --> ACTAGGCTGAGACAGGTTAAGAGGATTGTTCCTGATGGTGTCAATGCTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571728       <-- ACTAGGCTGAGACAGGTTAAGAGGATTGCTCCTGATGGTGTCAATGCTAA
EX761676       <-- ACTAGGCTGAGACAGGTTAAGAGGATTGTTCCTGATGGTGTCAATGCTAA
EV544625       <-- ACTAGGCTGAGACAGGTTAAGAGGATTGTTCCTGATGGTGTCAATGCTAA
EX761548       <-- ACTAGGCTGAGACAGGTTAAGAGGATTGTTCCTGATGGTGTCAATGCTAA
EX767191       <-- ACTAGGCTGAGACAGGTTAAGAGGATTGTTCCTGATGGTGTCAATGCTAA
FD935746       <-- ACTAGGCTGAGACAGGTTAAGAGGATTGTTCCTGATGGTGTCAATGCTAA
EY911656       <-- ACTAGGCTGAGACAGGTTAAGAGGATTGTTCCTGATGGTGTCAATGCTAA
EY928229       <-- ACTAGGCTGAGACAGGTTAAGAGGATTGTTCCTGATGGTGTCAATGCTAA
EY903792       <-- ACTAGGCTGAGACAGGTTAAGAGGATTGTTCCTGATGGTGTCAATGCTAA
FD531062       <-- ACTAGGCTGAGACAGGTTAAGAGGATTGTTCCTGATGGTGTCAATGCTAA
FD572799       <-- ATTAG.............................................
EY943625       <-- ATTAGG............................................
FD958724       <-- ACTAGGCTGAGACAGGTTAAGAGGATTGTTCCTGATGGTGTCAATGCTAA
FD574385       <-- ..TAGGGTGAGACAGGTTAAGAGGATTGTTCCTGATGGTGTCAATGCTAA
EV549079       --> ACTACGCTGAGACAGGTTAAGAGGATTGTTCCTGATGGTGTCAATGCTAA
FD535387       --> A.................................................
FD941751       --> ACTAGGCTGAGACAGGTTAAGAGGATTGTTCCTGATGGTGTCAATGCTAA
EX758119       --> ACTACGCTGAGACAGGTTAAGAGGATTGTTCCTGATGGTGTCAATGCTAA
FD570364       --> ACTAGGCTGAGACAGGTTAAGAGGATTGTTCCTGATGGTGTCAATGCTAA
EV566645       --> ACTAGGCTGAGACAGGTTAAGAGGATTGCTCCTGATGGTGTCAATGCTAA
EY947784       --> A.................................................
FD568459       --> ACTAG-CTGAG.......................................
FD939683       --> ..................................................
EX771572       --> ACTAGGCTGAGACAGGTTAAGAGGATTGTTCCTGATGGTGTCAATGCTAA
EX905828       --> ACTAGGCTGAGACAGGTTAAGAGGATTGTTCCTGATGGTGTCAATGCTAA
EX758282       --> ACTAGGCTGAGACAGGTTAAGAGGATTGTTCCTGATGGTGTCAATGCTAA
EY915892       --> ACTAGGCTGAGACAGGTTAAGAGGATTGTTCCTGATGGTGTCAATGCTAA
EY932519       --> ACTAGGCTGAGACAGGTTAAGAGGATTGTTCCTGATGGTGTCAATGCTAA
FD962109       --> ACTAGGCTGAGACAGGTTAAGAGGATTGTTCCTGATGGTGTCAATGCTAA

               649    -    699
UN16231        --> GTTTCTGTCGAACCATGGTCCTTTGGCTAACCGTCAACCTGGAAGTGCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571728       <-- GTTTCTGTCGAACCATGGTCCTTTGGCTAACCGTCAACCGGGAAGTGCGT  Raphanus raphanistrum subsp. landra
EX761676       <-- GTTTCTGTCGAACCATGGTCCTTTGGCTAACCGTCAACCTGGAAGTGCGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV544625       <-- GTTTCTGTCGAACCATGGTCCTTTGGCTAACCGTCAACCTGGAAGTGCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX761548       <-- GTTTCTGTCGAACCATGGTCCTTTGGCTAACCGTCAACCTGGAAGTGCGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX767191       <-- GTTTCTGTCGAACCATGGTCCTCTGGCTAACCGTCAACCTGGAAGTGCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD935746       <-- GTTTCTGTCGAACCATGGTCCTTTGGCTAACCGCCAACCGGGAAGTGCGT  Raphanus sativus var. oleiformis
EY911656       <-- GTTTCTGTCGAACCATGGTCCTTTGGCTAACCGTCAACCTGGAAGTGCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY928229       <-- GTTTCTGTCGAACCATGGTCCTTTGGCTAACCGTCAACCGGGAAGTGCGT  Raphanus sativus var. oleiformis
EY903792       <-- GTTTCTGTCGAACCATGGTCCTTTGGCTAACCGTCAACCTGGAAGTGCGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531062       <-- GTTTCTGTCGAACCATGGTCCTTTGGCTAACCGTCAACCTGGAAGTGCGT  Raphanus raphanistrum subsp. maritimus
FD572799       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY943625       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD958724       <-- GTTTCTGTCGAACCATGGTCCTTTGGCTAACCGTCAACCTGGAAGTGCGT  Raphanus raphanistrum subsp. maritimus
FD574385       <-- GTTTCTGTCGAACCATGGTCCTTTGGCTAACCGTCAACCGGGAAGTGCGT  Raphanus sativus cv Early Scarlet Globe
EV549079       --> GTTTCTGTCGAACCATGGTCCTTTGGCTAACCGTCAACCTGGAAGTGCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD535387       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD941751       --> GTTTCTGTCGAACCATGGTCCTTTGGCTAACCGTCAACCGGGAAGTGCGT  Raphanus sativus var. oleiformis
EX758119       --> GTTTCTGTCGAACCATGGTCCTTTGGCTAACCGTCAACCTGGAAGTGCGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD570364       --> GTTTCTGTCGAACCATGGTCCTTTGGCTAACCGTCAACCGGGAAGTGCGT  Raphanus sativus cv Early Scarlet Globe
EV566645       --> GTT-CTGTCGAACCATGGTCCTTTGGCTAACCGTCAACCGGGAAGTGCGT  Raphanus raphanistrum subsp. landra
EY947784       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD568459       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD939683       --> ..................................................  Raphanus sativus var. oleiformis
EX771572       --> GTTTCTGTCGAACCATGGTCCTTTGGCTAACCGTCAACCTGGAAGTGCGT  Raphanus raphanistrum subsp. landra
EX905828       --> GTTTCTGTCGAACCATGGTCCTTTGGCTAACCGTCAACCGGGAAGTGCGT  Raphanus sativus cv Rat-Tail Radish #3870
EX758282       --> GTTTCTGTCGAACCATGGTCCTTTGGC.......................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY915892       --> GTTTCTGTCGAACCATGGTCCTTTGGCTAACCGTCAACCTGGAAGTGCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY932519       --> GTTTCTGTCGAACCATGGTCCTTTGGCTAACCGTCAACCGGGAAGTGCGT  Raphanus sativus var. oleiformis
FD962109       --> GTTTCTGTCGAACCATGGTCCTTTGGCTAACCGTCAACCTGGAAGTGCGT  Raphanus raphanistrum subsp. maritimus

               699    -    749
UN16231        --> TCATATCAGCAACCAGCGATTAAGAATGAAGATGATTTGTGGTTGTAGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571728       <-- TCATATCAGCAACCAGCGATTAAGAATGAAGATGATTTGTGGTTGTAGTA  Raphanus raphanistrum subsp. landra
EX761676       <-- TCATATCAGCAACCAGCGATTAAGAATGAATATGATTTGTGGTTGTAGTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV544625       <-- TCATATCAGCAACCAGCGATTAAGAATGAAGATGATTTGTGGTTGTAGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX761548       <-- TCATATCAGCAACCAGCGATTAAGAATGGATATGATTTGTGGTTGTAGTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX767191       <-- TCATATCAGCAACCAGCGATTAAGAATGAAGATGATTTGTGGTTGTAGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD935746       <-- TCATATCAGCAACCAGCGATAAAGAATGAAGACGATTTGTGGTTGTAGTA  Raphanus sativus var. oleiformis
EY911656       <-- TCATATCAGCAACCAGCGATTAAGAATGAAGATGATTTGTGGTTGTAGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY928229       <-- TCATATCAGCAACCAGCGATAAAGAATGAAGACGATTTGTGGTTGTAGTA  Raphanus sativus var. oleiformis
EY903792       <-- TCATATCAGCAACCAGCGATTAAGAATGAAAACGATTTGTGGTTGTAGTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531062       <-- TCATATCAGCAACCAGCGATTAAGAATGAAGATGATTTGTGGTTGTAGTA  Raphanus raphanistrum subsp. maritimus
FD572799       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY943625       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD958724       <-- TCATATCAGCAACCAGCGATTAAGAATGAAGATGATTTGTGGTTGTAGTA  Raphanus raphanistrum subsp. maritimus
FD574385       <-- TCATATCAGCAACCAGCGATAAAGAATGAAGACGATTTGTGGTTGTAGTA  Raphanus sativus cv Early Scarlet Globe
EV549079       --> TCATATCAGCAACCAGCGATTAAGAATGAAGATGATTTGTGGTTGTAGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD535387       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD941751       --> TCATATCAGC........................................  Raphanus sativus var. oleiformis
EX758119       --> TCATATCAGCAACCAGCGATTA-GAATG......................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD570364       --> TCATATCAGCAACCAGCGATAAAGAATGAAGACGATTTGTGGTTGTAGTA  Raphanus sativus cv Early Scarlet Globe
EV566645       --> TCATATCAGCAACCAGCGATTAAGAATGAAGATGATTTGTGGTTGTAGTA  Raphanus raphanistrum subsp. landra
EY947784       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD568459       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD939683       --> ..................................................  Raphanus sativus var. oleiformis
EX771572       --> TCATATCAGCAACCAGCGAT-AAGAATGAAGACGATTTGTGGTTGTAGTA  Raphanus raphanistrum subsp. landra
EX905828       --> TCATATCAGCAAC-AGCGATaagatgagacg...................  Raphanus sativus cv Rat-Tail Radish #3870
EX758282       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY915892       --> TCATATCAGCAACCAGCGATTAAGAATGAAGATGATTTGTGGTTGTAGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY932519       --> TCATATCAGCAACCAGCGATAAAGAATGAAGACGATTTGTGGTTGTAGTA  Raphanus sativus var. oleiformis
FD962109       --> TCATATCAGCAACCAGCGATTAAGAATGAAGATGATTTGTGGTTGTAGTA  Raphanus raphanistrum subsp. maritimus

               749    -    799
UN16231        --> CCGATAATACTCTAGTTTCCGAAGTTATTCGTTTTGTTTTTGTTGTAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571728       <-- CCGATAATACTCTAGTTTCCGAAGTTATTCGTTTTGTTTTTGTTGTAACA  Raphanus raphanistrum subsp. landra
EX761676       <-- CCGATAATACTCTAGTTTCCGAAGTTATTCGTTTTGTTTTTGTTGTAACA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV544625       <-- CCGATAATACTCTAGTTTCCGAAGTTATTCGTTTTGTTTTTGTTGTAACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX761548       <-- CCGATAATACTCTAGTTTCCGAAGTTATTCGTTTTGTTTTTGTTGTAACA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX767191       <-- CCGATAATACTCTAGTTTCCGAAGTTA---TTTTTGTTTTTGTTGTAACA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD935746       <-- CCGATAATACTCTAGGTTCCGAAGTTATTCGTTTTGTTTTTGTTGTAACA  Raphanus sativus var. oleiformis
EY911656       <-- CCGATAATACTCTAGTTTCCGAAGTTATTCGTTTTGTTTTTGTTGTAACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY928229       <-- CCGATAATACTCTAGGTTCCGAAGTTATTCGTTTTGTTTTTGTTGTAACA  Raphanus sativus var. oleiformis
EY903792       <-- CCGATAATACTCTAGTTTCCGAAGCTATTCGTTTTGTTTTTGTTGTAACA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531062       <-- CCGATAATACTTTAGTTTCCGAAGTTATTCGTTTTGTTTTTGTTGTAACA  Raphanus raphanistrum subsp. maritimus
FD572799       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY943625       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD958724       <-- CCGATAATACTCTAGTTTCCGAAGTTATTCGTTTTGTTTTTGTTGTAACA  Raphanus raphanistrum subsp. maritimus
FD574385       <-- CCGATAATACTTTAGGTTCCGAAGTTATTCGTTTTGTTTTTGTTGTAACA  Raphanus sativus cv Early Scarlet Globe
EV549079       --> CCGATAATACTCTAGTTTCCGAAGTTATTCG...................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD535387       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD941751       --> ..................................................  Raphanus sativus var. oleiformis
EX758119       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD570364       --> CCGATAtact........................................  Raphanus sativus cv Early Scarlet Globe
EV566645       --> CCGATAATACTCTAGTTTCCGAAGTTATTCGTTTTGTTTTTGTTGTAACA  Raphanus raphanistrum subsp. landra
EY947784       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD568459       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD939683       --> ..................................................  Raphanus sativus var. oleiformis
EX771572       --> CCGATAATACTCTGGTTTCCGA-G-TGTTCGTTTTGTTTT-GTTGTAACA  Raphanus raphanistrum subsp. landra
EX905828       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX758282       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY915892       --> CCGATAATACTCTAGTTTCCGAAGTTATTCGTTTTGTTTT-GTTGTAACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY932519       --> CCGATAATACTCTAGGTTCCGAAGTTATTCGTTTTGTTTTTGTTGTAACA  Raphanus sativus var. oleiformis
FD962109       --> CCGATAATACTCTAGTTTCCGAAGTTATTCGTTTTGTTTTTGTTGTAACA  Raphanus raphanistrum subsp. maritimus

               799    -    849
UN16231        --> GTTGAAAACAAGATCCTTGTCTGGTTTCGTTTTGTTTGGACAATTGTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571728       <-- GTTGAAAACAAGATACTTGTCTGGTTTCGTTTTGTTTGGACAATTGTTTT  Raphanus raphanistrum subsp. landra
EX761676       <-- GTTG..............................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV544625       <-- GTTGAAAACAAGATACTTGTCTGATTTCGTTTTGTTTGGACAATTGTTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX761548       <-- GTTGAAAACAAGATCCTTGTCTGGTTTCGTTTTGTTTGGACAATTGTTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX767191       <-- GTTGAAAACAAGATACTTGTCTGGTTTCGTTTTGTTTGGACAATTGTTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD935746       <-- GTTGAAAACAAGATCCTTTTCTGGTTTCGTTTTGTTTGGACAATTGTTT.  Raphanus sativus var. oleiformis
EY911656       <-- GTTGAAAACAAGATACTTGTCTGGTTTCGTTTTGTTTGGACAATTGTTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY928229       <-- GTTGAAGACAAGATCCTTTTCTGGTTTCGTTTTGTTTGGACAATTGTTTT  Raphanus sativus var. oleiformis
EY903792       <-- GTTGAAAACAAGATCCTTGTCTGGTTTCGTTTTGTTTGGACAATTGTTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531062       <-- GTTGAAAACAAAATCCTc................................  Raphanus raphanistrum subsp. maritimus
FD572799       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY943625       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD958724       <-- GTTGAAAACAAGATCCTCGTGTGGTTTCATTTTGTTTGGACAATTGTTTT  Raphanus raphanistrum subsp. maritimus
FD574385       <-- GTTGAAAACAAGATCCTTTTCTGGTTTCGTTTTGTTTGGACAATTGTTTT  Raphanus sativus cv Early Scarlet Globe
EV549079       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD535387       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD941751       --> ..................................................  Raphanus sativus var. oleiformis
EX758119       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD570364       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EV566645       --> GTTGAAAACA........................................  Raphanus raphanistrum subsp. landra
EY947784       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD568459       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD939683       --> ..................................................  Raphanus sativus var. oleiformis
EX771572       --> GTTGAAAAaa........................................  Raphanus raphanistrum subsp. landra
EX905828       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX758282       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY915892       --> GTTGAAAACAAGATACTTGTCTGGTTTCGTTTTGTTTGGACAAT-GTTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY932519       --> GTTGA.............................................  Raphanus sativus var. oleiformis
FD962109       --> GTTGAAAACAAGATCCTCGTGTGGTTTCATTTTGTTTGGACAATTGTTTT  Raphanus raphanistrum subsp. maritimus

               849    -    899
UN16231        --> ATGGTCTGTTTCTGTGTTCATTGCTTTAGTTCTGGTTTTACTTCTCATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571728       <-- ATGGTCTGTTTCTGTGTTC...............................
EX761676       <-- ..................................................
EV544625       <-- ATGGTCTGTTTCTGTGTTC...............................
EX761548       <-- ATGGTCTGTTTCTGTCTTC...............................
EX767191       <-- ATGGTCTGTTTCTGTGTTt...............................
FD935746       <-- ..................................................
EY911656       <-- ATGGTCTGTTTCTGTGTTCATCGCTTTAGTTCTGGTTTTACTTCTCATTT
EY928229       <-- ATGGTCTGTTTCTGTGTTCATTGCTTTAGTTCcg................
EY903792       <-- ATGGTC............................................
FD531062       <-- ..................................................
FD572799       <-- ..................................................
EY943625       <-- ..................................................
FD958724       <-- ATGGgc............................................
FD574385       <-- ATGGTCTGTTTCTGTGTTCATTGCTTT.......................
EV549079       --> ..................................................
FD535387       --> ..................................................
FD941751       --> ..................................................
EX758119       --> ..................................................
FD570364       --> ..................................................
EV566645       --> ..................................................
EY947784       --> ..................................................
FD568459       --> ..................................................
FD939683       --> ..................................................
EX771572       --> ..................................................
EX905828       --> ..................................................
EX758282       --> ..................................................
EY915892       --> ATGGTCTGTTTCTGTGTTCATCGCTTTA......................
EY932519       --> ..................................................
FD962109       --> ATGGgc............................................

               899    -    949
UN16231        --> CCC.
                   ~~~~
EV571728       <-- ....
EX761676       <-- ....
EV544625       <-- ....
EX761548       <-- ....
EX767191       <-- ....
FD935746       <-- ....
EY911656       <-- CCCc
EY928229       <-- ....
EY903792       <-- ....
FD531062       <-- ....
FD572799       <-- ....
EY943625       <-- ....
FD958724       <-- ....
FD574385       <-- ....
EV549079       --> ....
FD535387       --> ....
FD941751       --> ....
EX758119       --> ....
FD570364       --> ....
EV566645       --> ....
EY947784       --> ....
FD568459       --> ....
FD939683       --> ....
EX771572       --> ....
EX905828       --> ....
EX758282       --> ....
EY915892       --> ....
EY932519       --> ....
FD962109       --> ....