RadishBase

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Alignment for radish unigene UN16255

               1      -     51
UN16255        --> AATCAATCCTTCTGGGCTTTATTAAAGTAAAGACACTACAAAACAAGTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574063       <-- ..................................................
EV542190       <-- ..................................................
FD977384       <-- ..................................................
EV532603       <-- ..................................................
EX899715       <-- ..................................................
EY894557       <-- ..................................................
FD968094       <-- ..................................................
FD960943       --> AATCAATCCTTCTGGGCTTTATTAAAGTAAAGACACTACAAAACAAGTAT
EV528680       --> ................................ggACTACAAAACAAGTAT
EY924552       --> ..............................................ggAT
EV569541       --> ..................................................
EV538099       --> ..................................................
EY898518       --> ..................................................
FD972136       --> ..................................................
FD981669       --> ..................................................
EX895673       --> ..................................................

               51     -    101
UN16255        --> CTAAAATTCCATATAGTAGACTGTAGAAAGGACAGTTGGCAGATAAAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574063       <-- ..................................................
EV542190       <-- ..................................................
FD977384       <-- ..................................................
EV532603       <-- ..................................................
EX899715       <-- ..................................................
EY894557       <-- ..................................................
FD968094       <-- ..................................................
FD960943       --> CTAAAATTCCATATAGTAGACTGTAGAAAGGACAGTTGGCAGATAAAATT
EV528680       --> CTAAAATTCCATATAGTAGACTGTAGAAAGGACAGTTGGCAGATAAAATT
EY924552       --> CTAAAATTCCATATAGTAGACTGTAGAAAGGACAGTTGGCAGATAAAATT
EV569541       --> ..................................................
EV538099       --> ..................................................
EY898518       --> ..................................................
FD972136       --> ..................................................
FD981669       --> ..................................................
EX895673       --> ..................................................

               101    -    151
UN16255        --> ATATTTTTGAAAGACGGGAGAATAGAGAAGCGAAGACAGCAAAAGTAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574063       <-- ..................................................
EV542190       <-- ..................................................
FD977384       <-- ..................................................
EV532603       <-- ..................................................
EX899715       <-- ..................................................
EY894557       <-- ..................................................
FD968094       <-- ..................................................
FD960943       --> ATATTTTTGAAAGACGGGAGAATAGAGAAGCGAAGACAGCAAAAGTAAGC
EV528680       --> ATATTTTTGAAAGACGGGAGAATAGAGAAGCGAAGACAGCAAAAGTAAGC
EY924552       --> ATATTTTTGAAAGACGGGAGAATAGAGAAGCGAAGACAGCAAAAGTAAGC
EV569541       --> ..................................................
EV538099       --> ..................................................
EY898518       --> ..................................................
FD972136       --> ..................................................
FD981669       --> ..................................................
EX895673       --> ..................................................

               151    -    201
UN16255        --> TGAGAGATCACGTGGGGACGGAGAAGGAGGCGTTGGTATATGATTGGACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574063       <-- ..................................................
EV542190       <-- ..................................................
FD977384       <-- ..................................................
EV532603       <-- ..................................................
EX899715       <-- ..................................................
EY894557       <-- ..................................................
FD968094       <-- ..................................................
FD960943       --> TGAGAGATCACGTGGGGACGGAGAAGGAGGCGTTGGTATATGATTGGACC
EV528680       --> TGAGAGATCACGTGGGGACGGAGAAGGAGGCGTTGGTATATGATTGGACC
EY924552       --> TGAGAGATCACGTGGGGACGGAGAAGGAGGCGTTGGTATATGATTGGACC
EV569541       --> ..................................................
EV538099       --> ..................................................
EY898518       --> ..................................................
FD972136       --> ..................................................
FD981669       --> ..................................................
EX895673       --> ..................................................

               201    -    251
UN16255        --> GACCAGTTTGCACTGTTTCATGTTATCGCCAAACATCAAGACTTGTCCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574063       <-- ..................................................
EV542190       <-- ..................................................
FD977384       <-- ..................................................
EV532603       <-- ..................................................
EX899715       <-- ..................................................
EY894557       <-- ..................................................
FD968094       <-- ..................................................
FD960943       --> GACCAGTTTGCACTGTTTCATGTTATCGCCAAACATCAAGACTTGTCCAC
EV528680       --> GACCAGTTTGCACTGTTTCATGTTATCGCCAAACATCAAGACTTGTCCAC
EY924552       --> GACCAGTTTGCACTGTTTCATGTTATCGCCAAACATCAAGACTTGTCCAC
EV569541       --> ..................................................
EV538099       --> ..................................................
EY898518       --> ..................................................
FD972136       --> ..................................................
FD981669       --> ..................................................
EX895673       --> ..................................................

               251    -    301
UN16255        --> ATGCCGCCAGTGACGAGCTCATTACTTTATGTATAGACGACTCCTCTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574063       <-- ..................................................
EV542190       <-- ..................................................
FD977384       <-- ..................................................
EV532603       <-- ..................................................
EX899715       <-- ..................................................
EY894557       <-- ..................................................
FD968094       <-- ..................................................
FD960943       --> ATGCCGCCAGTGACGAGCTCATTACTTTATGTATAGACGACTCCTCTTCC
EV528680       --> ATGCCGCCAGTGACGAGCTCATTACTTTATGTATAGACGACTCCTCTTCC
EY924552       --> ATGCCGCCAGTGACGAGCTCATTACTTTATGTATAGACGACTCCTCTTCC
EV569541       --> ..................ggATTACTTTATGTATAGACGACTCCTCTTCC
EV538099       --> ..................................................
EY898518       --> ..................................................
FD972136       --> ..................................................
FD981669       --> ..................................................
EX895673       --> ..................................................

               301    -    351
UN16255        --> TATTATTACTTTTATAGCAAAGAAAAGTGTCTAGAATCAAGAAAATCGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574063       <-- ..........TTTATAGCAA-G-AAAGTGTCTAGAATCAAGAAAATCGGA
EV542190       <-- ...........ggATAGCAAAGAAAAGTGTCTAGAATCAAGAAAATCGGA
FD977384       <-- ..............TAGCAAAGAAAAGTGTCTAGAATCAAGAAAATCGGA
EV532603       <-- ................GCAAAGAAAAGTGTCTAGAATCAAGAAAATCGGA
EX899715       <-- ..................................................
EY894557       <-- ..................................................
FD968094       <-- ..................................................
FD960943       --> TATTATTACTTTTATAGCAAAGAAAAGTGTCTAGAATCAAGAAAATCGGA
EV528680       --> TATTATTACTTTTATAGCAAAGAAAAGTGTCTAGAATCAAGAAAATCGGA
EY924552       --> TATTATTACTTTTATAGCAAAGAAAAGTGTCTAGAATCAAGAAAATCGGA
EV569541       --> TATTATTACTTTTATAGCAAAGAAAAGTGTCTAGAATCAAGAAAATCGGA
EV538099       --> ...........ggATAGCAAAGAAAAGTGTCTAGAATCAAGAAAATCGGA
EY898518       --> ...........ggATAGCAAAGAAAAGTGCCTAGAATCAAGAAAATCGGA
FD972136       --> ...........ggATAGCAAAGAAAAGTGTCTAGAATCAAGAAAATCGGA
FD981669       --> .......................AAAGTGTCTAGAATCAAGAAAATCGGA
EX895673       --> ..................................................

               351    -    401
UN16255        --> AGAGGAAAAGAGAGGAAGAACAAGAGTTATGTCATACAACACGGGATCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574063       <-- AGAGGAAAAGAGAGGAAGAACAAGAGTTATGTCATACAACACGGGATCTT  Raphanus raphanistrum subsp. landra
EV542190       <-- AGTGGAAAAGAGGGGAAGAACAAGAGTTATGTCATACTACACGGGATCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD977384       <-- AGAGGAAAAGAGGGGAAGAACAAGAATTATGTCATACTACACGGGATCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV532603       <-- AGAGGAAAAGAGAGGAAGAACAAGAGTTATGTCATACAACACCGGATCTT  Raphanus raphanistrum subsp. maritimus
EX899715       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY894557       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD968094       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD960943       --> AGAGGAAAAGAGAGGAAGAACAAGAGTTATGTCATACAACACCGGATCTT  Raphanus raphanistrum subsp. maritimus
EV528680       --> AGAGGAAAAGAGAGGAAGAACAAGAGTTATGTCATACAACACCGGATCTT  Raphanus raphanistrum subsp. maritimus
EY924552       --> AGAGGAAAAGAGAGGAAGAACAAGAGTTATGTCATACAACACCGGATCTT  Raphanus raphanistrum subsp. landra
EV569541       --> AGAGGAAAAGAGAGGAAGAACAAGAGTTATGTCATACAACACCGGATCTT  Raphanus raphanistrum subsp. landra
EV538099       --> AGTGGAAAAGAGGGGAAGAACAAGAGTTATGTCATACTACACGGGATCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY898518       --> AGAGGAAAAGAGAGGAAGAACAAGAGTTATGTCATACAACACCGGATCTT  Raphanus raphanistrum subsp. maritimus
FD972136       --> A------AAGAGAGGAAGAACAAGAGTTATGTCATACAACACGGGATCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD981669       --> AGAGGAAAAGAGGGGAAGAACAAGAATTATGTCATACTACACGGGATCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX895673       --> ..................................................  Raphanus sativus cv Early Scarlet Globe

               401    -    451
UN16255        --> CATCATCTTTTGCTAATGTGTTACTCGTCGTGTCACTTATGCTTCTGAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574063       <-- CATCATCTTT-GCTAATGTGTTACTCGTCGTGTCACTTATGCTTCTGAGT  Raphanus raphanistrum subsp. landra
EV542190       <-- CATCATCTTGTGCTAATGTGTTACTCATCGTGCTCCTTATGCTTCTGAGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD977384       <-- CATCATCTTGTGCTAATGTGTTACTCATCGTGCTCCTTATGCTTCTGAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV532603       <-- CATCATCTTTTGCTAATGTGTTACTCGTCGTGTCACTTATGCTTCTGAGT  Raphanus raphanistrum subsp. maritimus
EX899715       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY894557       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD968094       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD960943       --> CATCATCTTTTGCTAATGTGTTACTCGTCGTGTCACTTATGCTTCTGAGT  Raphanus raphanistrum subsp. maritimus
EV528680       --> CATCATCTTTTGCTAATGTGTTACTCGTCGTGTCACTTATGCTTCTGAGT  Raphanus raphanistrum subsp. maritimus
EY924552       --> CATCATCTTTTGCTAATGTGTTACTCGTCGTGTCACTTATGCTTCTGAGT  Raphanus raphanistrum subsp. landra
EV569541       --> CATCATCTTTTGCTAATGTGTTACTCGTCGTGTCACTTATGCTTCTGAGT  Raphanus raphanistrum subsp. landra
EV538099       --> CATCATCTTGTGCTAATGTGTTACTCATCGTGCTCCTTATGCTTCTGAGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY898518       --> CATCATCTTTTGCTAATGTGTTACTCGTCGTGTCACTTATGCTTCTGAGT  Raphanus raphanistrum subsp. maritimus
FD972136       --> CATCATCTTGTGCTAATGTGTTAGTCATCGTGTCACTTATGCTTCTGAGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD981669       --> CATCATCTTGTGCTAATGTGTTACTCATCGTGCTCCTTATGCTTCTGAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX895673       --> ..................................................  Raphanus sativus cv Early Scarlet Globe

               451    -    501
UN16255        --> TTGTCGGCTGATGCGTACAAGAACTATACTGTGGGAGGGTCCACGGGATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574063       <-- TTGTCGGCTGATGCGTACAAGAACTATACTGTGGGAGGGTCCACGGGATG
EV542190       <-- TTGTCGGCTGATGCGTACAAGAACTATACTGTGGGAGGGTCCACGGGATG
FD977384       <-- TTGTCGGCTGATGCGTACAAGAACTATACTGTGGGAGGGTCCACGGGATG
EV532603       <-- TTGTCGGCTGATGCGTACAAGAACTATACTGTGGGAGGGTCCACGGGATG
EX899715       <-- ..................................................
EY894557       <-- ..................................................
FD968094       <-- ..................................................
FD960943       --> TTGTCGGCTGATGCGTA.................................
EV528680       --> TTGTCGGCTGATGCGTACAAGAACTATACTGTGGGAGGGTCCACGGGATG
EY924552       --> TTGTCGGCTGATGCGTACAAGAACTATACTGTGGGAGGGTCCACGGGATG
EV569541       --> TTGTCGGCTGATGCGTACAAGAACTATACTGTGGGAGGGTCCACGGGATG
EV538099       --> TTGTCGGCTGATGCGTACAAGAACTATACTGTGGGAGGGTCCACGGGATG
EY898518       --> TTGTCGGCTGATGCGTACAAGAACTATACTGTGGGAGGGTCCACGGGATG
FD972136       --> TTGTCGGCTGATGCGTACAAGAACTATACTGTGGGAGGGTCCACGGGATG
FD981669       --> TTGTCGGCTGATGCGTACAAGAACTATACTGTGGGAGGGTCCACGGGATG
EX895673       --> ..................................................

               501    -    551
UN16255        --> GTTCGATATCCAGGAGAAATCGTCTGCAAATTATCAGAAATGGGCTGATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574063       <-- GTTCGATATCCAGGAGAAATCTTCTGCAAATTATCAGAAATGGGCTGATT  Raphanus raphanistrum subsp. landra
EV542190       <-- GTTCGATATCCAGGAGAGACCGTCTGCAAATTATCAGAAATGGGCTGATT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD977384       <-- GTTCGATATCCAGGAGAGACCGTCTGCAAATTATCAGAAATGGGCTGATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV532603       <-- GTTCGATATCCAGGAGAAATCGTCTGCAAATTATCAGAAATGGGCTGATT  Raphanus raphanistrum subsp. maritimus
EX899715       <-- ............................................CTGATT  Raphanus sativus cv Early Scarlet Globe
EY894557       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD968094       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD960943       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV528680       --> GTTCGATATCCAGGAGAAATCGTCTGCAAATTATCAGAAATGGGCTGATT  Raphanus raphanistrum subsp. maritimus
EY924552       --> GTTCGATATCCAGGAGAAATCGTCTGCAAATTATCAGAAATGGGCTGATT  Raphanus raphanistrum subsp. landra
EV569541       --> GTTCGATATCCAGGAGAAATCTTCTGCAAATTATCAGAAATGGGCTGATT  Raphanus raphanistrum subsp. landra
EV538099       --> GTTCGATATCCAGGAGAGACCGTCTGCAAATTATCAGAAATGGGCTGATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY898518       --> GTTCGATATCCAGGAGAAATCGTCTGCAAATTATCAGAAATGGGCTGATT  Raphanus raphanistrum subsp. maritimus
FD972136       --> GTTCGATATCCAGGAGAAACCGTCTGCAAATTATCAGAAATGGGCTGATT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD981669       --> GTTCGATATCCAGGAGAGACCGTCTGCAAATTATCAGAAATGGGCTGATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX895673       --> ............................................CTGATT  Raphanus sativus cv Early Scarlet Globe

               551    -    601
UN16255        --> CCAAAACCTTTTCTTTGGGTGATTTCCTCATTTTCAACACAGATAGCAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574063       <-- CCAAAACATTTTCTTTGGGTGATTTCCTCATTTTCAACACAGATAGCAAC  Raphanus raphanistrum subsp. landra
EV542190       <-- CCAAAACCTTTTCTTTGGGTGATTTCCTCATTTTCAACACAGATAGCAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD977384       <-- CCAAAACCTTTTCTTTGGGTGATTTCCTCATTTTCAACACAGATAACAAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV532603       <-- CCAAAACATTTTCTTTGGGTGATTTCCTCATTTTCAACACAGATAGCAAC  Raphanus raphanistrum subsp. maritimus
EX899715       <-- CCAAAACCTTTTCTTTGGGTGATTTCCTCATTTTCAACACAGATAACAAC  Raphanus sativus cv Early Scarlet Globe
EY894557       <-- ..............................TTTTCAACACAGATAGCAAC  Raphanus raphanistrum subsp. maritimus
FD968094       <-- ..............................TTTTCAACACAGATAGCAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD960943       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV528680       --> CCAAAACATTTTCTTTGGGTGATTTCCTCATTTTCAACACAGATAGCAAC  Raphanus raphanistrum subsp. maritimus
EY924552       --> CCAAAACATTTTCTTTGGGTGATTTCCTCATTTTCAACACAGATAGCAAC  Raphanus raphanistrum subsp. landra
EV569541       --> CCAAAACATTTTCTTTGGGTGATTTCCTCATTTTCAACACAGATAGCAAC  Raphanus raphanistrum subsp. landra
EV538099       --> CCAAAACCTTTTCTTTGGGTGATTTCCTCATTTTCAACACAGATAGCAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY898518       --> CCAAAACATTTTCTTTGGGTGATTTCCTCATTTTCAACACAGATAGCAAC  Raphanus raphanistrum subsp. maritimus
FD972136       --> CCAAAACCTTTTCTTTGGGTGATTTCCTCATTTTCAACACAGATAGCAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD981669       --> CCAAAACCTTTTCTTTGGGTGATTTCCTCATTTTCAACACAGATAACAAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX895673       --> CCAAAACCTTTTCTTTGGGTGATTTCCTCATTTTCAACACAGATAACAAC  Raphanus sativus cv Early Scarlet Globe

               601    -    651
UN16255        --> CATTCGGTGGTACAAACATATGATTTCAAAACTTACAAAGAATGTGACTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574063       <-- CATTCGGTGGTACAAACATATGATTTCAAAACTTACAAAGAATGTGATTA  Raphanus raphanistrum subsp. landra
EV542190       <-- CATTCGGTGGTACAAACATATGATTTCAAAACTTACAAAGGATGTGACTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD977384       <-- CATTCGGTGGTACAAACATATGATTTCAAAACTTACAAAGAATGTGACTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV532603       <-- CATTCGGTGGTACAAACATATGATTTCAAAACTTACAAAGAATGTGATTA  Raphanus raphanistrum subsp. maritimus
EX899715       <-- CATTCGGTGGTACAAACATATGATTTCAAAACTTACAAAGAATGTGACTA  Raphanus sativus cv Early Scarlet Globe
EY894557       <-- CATTCGGTGGTATAAACATATGATTTCAAAACTTACAAAGAATGTGATTA  Raphanus raphanistrum subsp. maritimus
FD968094       <-- CATTCGGTGGTACAAACATATGATTTCAAAACTTACAAAGAATGTGACTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD960943       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV528680       --> CATTCGGTGGTACAAACATATGATTTCAAAACTTACAAAGAATGTGATTA  Raphanus raphanistrum subsp. maritimus
EY924552       --> CATTCG-TGGTACAAACATATGATTTCAAAACTTACAAAGAATGTGATTA  Raphanus raphanistrum subsp. landra
EV569541       --> CATTCGGTGGTACAAACATATGATTTCAAAACTTACAAAGAATGTGATTA  Raphanus raphanistrum subsp. landra
EV538099       --> CATTCGGTGGTACAAACATATGATTTCAAAACTTACAAAGGATGTGACTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY898518       --> CATTCGGTGGTATAAACATATGATTTCAAAACTTACAAAGAATGTGATTA  Raphanus raphanistrum subsp. maritimus
FD972136       --> CATTCGGTGGTACAAACATATGATTTCAAAACTTACAAAGAATGTGACTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD981669       --> CATTCGGTGGTACAAACATATGATTTCAAAACTTACAAAGAATGTGACTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX895673       --> CATTCGGTGGTACAAACATATGATTTCAAAACTTACAAAGAATGTGACTA  Raphanus sativus cv Early Scarlet Globe

               651    -    701
UN16255        --> CAACAATGGTGAAGACAATAGTACAACAGAGTGGTCGGCTGCAAACCCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574063       <-- CAACAATGGTGAAGACAATAGTACAACAGAGTGGTCGGCTGCAAACCCTT
EV542190       <-- CAACAATGGTGAAGACAATAGTACAACAGAGTGGTCGGCTGCAAACCCTT
FD977384       <-- CAACAATGGTGAAGACAATAGTACAACAGAGTGGTCGACTGCAAACCCTT
EV532603       <-- CAACAATGGTGAAGACAATAGTACAACAGAGTGGTCGGCTGCAAACCCTT
EX899715       <-- CAACAATGGTGAAGACAATAGTACAACAGAGTGGTCGTCTGCAAACCCTT
EY894557       <-- CAACAATGGTGAAGACAATGGTACAACAGAGTGGTCGGCTGCAAACCCTT
FD968094       <-- CAACAATGGTGAAGACAATAGTACAACAGAGTGGTCGGCTGCAAACCCTT
FD960943       --> ..................................................
EV528680       --> CAACAATGGTGAAGACAATAGTACAACAGAGTGGTCGGCTGCAAACCCTT
EY924552       --> CAACAATGGTGAAGACA-TAGTACAACAGAGTGGTCG-CTGCAAACCCTT
EV569541       --> CAACAATGGTGAAGACAATAGTACAACAGAGTGGTCGGCTGCAAACCCTT
EV538099       --> CAACAATGGTGAAGACAATAGTACAACAGAGTGGTCGGCTGCAAACCCTT
EY898518       --> CAACAATGGTGAAGACAATGGTACAACAGAGTGGTCGGCTGCAAACCCTT
FD972136       --> CAACAATGGTGAAGACAATAGTACAACAGAGTGGTCGGCTGCAAACCCTT
FD981669       --> CAACAATGGTGAAGACAATAGTACAACAGAGTGGTCGACTGCAAACCCTT
EX895673       --> CAACAATGGTGAAGACAATAGTACAACAGAGTGGTCGTCTGCAAACCCTT

               701    -    751
UN16255        --> CAGCGACATCTCCAGTTCCGGTCTCAGTTAGTGTTCCTCTAGTTAAAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574063       <-- CAGCGACATCTCCAGTTCCGGTCTCAGTTAGTGTTCCTCTAGTTAAAGAA
EV542190       <-- CAGCGACATCTCCAGTTCCGGTCTCAGTTAGTGTTCCTCTAGTTAAAGAA
FD977384       <-- CAGCGACATCTCCAGTTCCGGTCTCAGTTAGTGTTCCTCTAGTTAAAGAA
EV532603       <-- CAGCGACATCTCCAGTTCCGGTCTCAGTTAGTGTTCCTCTAGTTAAAGAA
EX899715       <-- CAGCGACATCTCCAGTTCCGGTCTCAGTTAGTGTTCCTCTAGTTAAAGAA
EY894557       <-- CAGCGACATCTCCAGTTCCGGTCTCAGTTAGTGTTCCTCTAGTTAAAGAA
FD968094       <-- CAGCGACATCTCCAGTTCCGGTCTCAGTTAGTGTTCCTCTAGTTAAAGAA
FD960943       --> ..................................................
EV528680       --> CAGCGACATCTCCAGTTCCGGTCTCAGTTAGTGTTCCTCTAGTTAAAGAA
EY924552       --> CAGCGACATCTCCAGTTCCG-TCTCAGTTAGTGTTCCTCTAGTTAAAGAA
EV569541       --> CAGCGACATCTCCAGTTCCGGTCTCAGTTAGTGTTCCTCTAGTTAAAGAA
EV538099       --> CAGCGACATCTCCAGTTCCGGTCTCAGTTAGTGTTCCTCTAGTTAAAGAA
EY898518       --> CAGCGACATCTCCAGTTCCGGTCTCAGTTAGTGTTCCTCTAGTTAAAGAA
FD972136       --> CAGCGACATCTCCAGTTCCGGTCTCAGTTAGTGTTCCTCTAGTTAAAGAA
FD981669       --> CAGCGACATCTCCAGTTCCGGTCTCAGTTAGTGTTCCTCTAGTTAAAGAA
EX895673       --> CAGCGACATCTCCAGTTCCGGTCTCAGTTAGTGTTCCTCTAGTTAAAGAA

               751    -    801
UN16255        --> GGTTCCAATTATTTCTTCTCAGGAAATTATGACGGTGAGCAATGTAAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574063       <-- GGTTCCAATTATTTCTTCTCAGGAAATTATGACGGTGAACAATGTAAATT  Raphanus raphanistrum subsp. landra
EV542190       <-- GGTTCCAATTATTTCTTCTCAGGAAATTATGACGGTGAGCAATGTAAATT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD977384       <-- GGTTCCAATTATTTCTTCTCAGGAAATTATGACGGTGAGCAATGTAAATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV532603       <-- GGTTCCAATTATTTCTTCTCAGGAAATTATGACGGTGAACAATGTAAATT  Raphanus raphanistrum subsp. maritimus
EX899715       <-- GGTTCCAATTATTTCTTCTCAGGAAATTATGACGGTGAGCAATGTAAATT  Raphanus sativus cv Early Scarlet Globe
EY894557       <-- GGTTCCAATTATTTCTTCTCAGGAAATTATGACGGTGAACAATGTAAATT  Raphanus raphanistrum subsp. maritimus
FD968094       <-- GGTTCCAATTATTTCTTCTCAGGAAACTATGACGGTGAGCAATGTAAATT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD960943       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV528680       --> AGTTCCAATTATTTCTTCTCACGAAATTATGACGGTGAACAATGTAA-TT  Raphanus raphanistrum subsp. maritimus
EY924552       --> G-TTCCA...........................................  Raphanus raphanistrum subsp. landra
EV569541       --> GGTTCCAATTATTTCTTCTCAGGAAATTATGACGGTGAACAATGTAAATT  Raphanus raphanistrum subsp. landra
EV538099       --> GGTTCCAATTATTTCTTCTCAGGAAATTATGACGGTGAGCAATGTAAATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY898518       --> GGTTCCAATTATTTCTTCTCAGGAAATTATGACGGTGAACAATGTAAATT  Raphanus raphanistrum subsp. maritimus
FD972136       --> GGTTC.............................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD981669       --> GGTTCCAATTATTTCTTCTCAGGAAATTATGACGGTGAGCAATGTAAATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX895673       --> GGTTCCAATTATTTCTTCTCAGGAAATTATGACGGTGAGCAATGTAAATT  Raphanus sativus cv Early Scarlet Globe

               801    -    851
UN16255        --> TGGACAGCATTTCATGATAAATGTAACACATGGTCAGGGCCTACCATCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574063       <-- TGGACAGCATTTCATGATAAATGTAACACATGGTCAGGGCCTACCATCAC
EV542190       <-- TGGACAGCATTTCATGATAAATGTAACACATGGCCAGGGCCTACCATCAC
FD977384       <-- TGGACAGCATTTCATGATAAATGTAACACACGGTCAGGGCCTACCATCAC
EV532603       <-- TGGACAGCATTTCATGATAAATGTAACACATGGTCAGGGCCTACCATCAC
EX899715       <-- TGGACAGCATTTCATGATAAATGTAACACATGGTCAGGGCCTACCATCAC
EY894557       <-- TGGACAGCATTTCATGATAAATGTAACACATGGTCAGGGCCTACCATCAC
FD968094       <-- TGGACAGCATTTCATGATAAATGTAACACATGGTCAGGGCCTACCATCAC
FD960943       --> ..................................................
EV528680       --> TGGACAGCATTTCATGATAAATGTAACACATGGTCAGG-CCTACCATCAC
EY924552       --> ..................................................
EV569541       --> TGGACAGCATTTCATGATAAATGTAACACATGGTCAGGGCCTACCATCAC
EV538099       --> TGGACAGCATTTCATGATAAATGTAACACATGGCCAGGGCCTACCATCAC
EY898518       --> TGGACAGCATTTCATGATAAATGTAACACATGGTCAGGGCCTACCATCAC
FD972136       --> ..................................................
FD981669       --> TGGACAGCATTTCATGATAAATGTAACACACGGTCAGGGCCTACCATCAC
EX895673       --> TGGACAGCATTTCATGATAAATGTAACACATGGTCAGGGCCTACCATCAC

               851    -    901
UN16255        --> CAGATGAA-GATGGTGAAACGGCCCCTGGACCAGGTCAATCCTCTCAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574063       <-- CAGATGAA-GATGGTGAAACGGCCCCTGGACCAGGCCAATCCTCTCAATC
EV542190       <-- CAGATGAA-GATGGTGAAACGGCCCCTGGACCAGGTCAATCATCTCAATC
FD977384       <-- CAGATGAA-GATGGTGAAACGGCCCCTGGACCAGGTCAATCCTCCCAATC
EV532603       <-- CAGATGAA-GATGGTGAAACGGCCCCTGGACCAGGTCAATCCTCTCAATC
EX899715       <-- CAGATGAA-GATGGTGAGACGGCCCCTGGACCAGGTCAATCCTCTCAATC
EY894557       <-- CAGATGAA-GATGGTGAAACGGCCCCTGGACCAGGTCAATCCTCTCAATC
FD968094       <-- CAGATGAA-AATGATGAAACGGCCCCTGGACCAGGTCAATCCTCTCAATC
FD960943       --> ..................................................
EV528680       --> -AGATGA--GATGGTGAAACG-CCCCTGGACagtcatctctc........
EY924552       --> ..................................................
EV569541       --> CAGATGAAAGATGGTGAAACGGCCCCTGGACCAGGCCAATCCTCTCAATC
EV538099       --> CAGATGAA-GATGGTGAAACGGCCCCTGGACCAGGTCAATCATCTCAATC
EY898518       --> CAGATGAA-GATGGTGAAACGGCCCCTGGACCAGGTCAATCCTCTCAATC
FD972136       --> ..................................................
FD981669       --> CAGATGAA-GATGGTGAAACGGCCCCTGGACCAGGTCAATCCTCCCAATC
EX895673       --> CAGATGAA-GATGGTGAGACGGCCCCTGGACCAGGTCAATCCTCTCAATC

               901    -    951
UN16255        --> CGGTGATGATGATGAAGTTGCTCCAGATACCATAGTTCCCGCCAATTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574063       <-- CGGTGATGGTGATGAAGTTGCTCCAGATACCATAGTTCCCGCCAATTTTG
EV542190       <-- CGGTGATGATGATGAAGTTGCTCCAGATACCATAGTTCCCGCCAATTTTG
FD977384       <-- CGGTGATGATGATGAAGTTGCTCCAGATACCATAGTTCCCGCCAATTTTG
EV532603       <-- CGGTGATGATGATGAAGTTGCTCCAGATACCATAGTTCCCGCCAATTTTG
EX899715       <-- CGGTGATGATGATGAAGTTGCTCCAGATACCATAGTTCCCGCCAATTTTG
EY894557       <-- CGGTGATGACGATGAAGTTGCTCCAGATACCATAGTTCCCGCCAATTTTG
FD968094       <-- CGGTGATGATGATGAAGTTGCTCCAGATACCATAGTTCCCGCCAATTTTG
FD960943       --> ..................................................
EV528680       --> ..................................................
EY924552       --> ..................................................
EV569541       --> CGGTGATGGTGATGAAGTTGCTCCAGATACCATAGTTCCCGCCAATTTTG
EV538099       --> CGGTGATGATGATGAAGTTGCTCCAGATACCATAGTTCCCGCCAATTTTG
EY898518       --> CGGTGATGACGATGAAGTTGCTCCAGATACCATAGTTCCCGCCAATTTTG
FD972136       --> ..................................................
FD981669       --> CGGTGATGATGATGAAGTTGCTCCAGATACCATAGTTCCCGCCAATTTTG
EX895673       --> CGGTGATGATGATGAAGTTGCTCCAGATACCATAGTTCCCGCCAATTTTG

               951    -   1001
UN16255        --> ACCATCCTAAAGATATTGAGAGTGATGATGATGATAGTTTGGTTAAGGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574063       <-- ACCATCCTAAAGATATTGAGAGTGATGATGATGATAGTTTGGTTAAGGGT
EV542190       <-- ACCATCCTAAAGATATTGAGAGTGATGATGATGATAGTTTGGTTAAGGGT
FD977384       <-- ACCATCCTAAAGATATTGAGAGTGATGATGATGATAGTTTGGTTAAGGGT
EV532603       <-- ACCATCCTAAAGATATTGAGAGTGATGATGATGATAGTTTGGTTAAGGGT
EX899715       <-- ACCATCCTAAAGATATTGAGAGTGATGATGATGATAGTTTGGTTAAGGGT
EY894557       <-- ACCATCCTAAAGATATTGAGAGTGATGATGATGATAGTTTGGTTAAGGGT
FD968094       <-- ACCATCCTAAAGATATTGAGAGTGATGATGATGATAGTTTGGTTAAAGGT
FD960943       --> ..................................................
EV528680       --> ..................................................
EY924552       --> ..................................................
EV569541       --> ACCATCCTAAAGATATTGAGAGTGATGATGATGATAGTTTGGTTAAGG-T
EV538099       --> ACCATCCTAAAGATATTGAGAGTGATGATGATGATAGTTTGGTTAAGGGT
EY898518       --> ACCATCCTAAAGATATTGAGAGTGATGATGATGATAGTTTGGTTAAGG-T
FD972136       --> ..................................................
FD981669       --> ACCATCCTAAAGATATTGAGAGTGATGATGATGATAGTTTGGTTAAGG-T
EX895673       --> ACCATCCTAAAGATATTGAGAGTGATGATGATGATAGTTTGGTTAAGGGT

               1001   -   1051
UN16255        --> CGTAAAAGTTCTTCTTCCGTTACAAAATATAATTTGTTATGTTTAGTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574063       <-- CGTAAAAGTTCTTCTTCCGTTACAAAATATAATTTGTTATGTTTAGTTTT  Raphanus raphanistrum subsp. landra
EV542190       <-- CGTAAAAGTTCTTCTTCCGTTACAGAATATAATTTTTTATGTTTAGTTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD977384       <-- CGTAAAAGTTCTTCTTCCGTTACAGAATATAATTTTTTATGTTTAGTTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV532603       <-- CGTAAAAGTTCTTCTTCCGTTACAAAATATAATTTGTTATGTTTAGTTTT  Raphanus raphanistrum subsp. maritimus
EX899715       <-- CGTAAAAGTTCTTCTTCCGTTACAAAATATAATTTGTTATGTTTAGTTTT  Raphanus sativus cv Early Scarlet Globe
EY894557       <-- CGTAAAAGTTCTTCTTCCGTTACAAAATATAATTTGTTATGTTTAGTTTT  Raphanus raphanistrum subsp. maritimus
FD968094       <-- CGTAAAAGTTCTTCTTCCGTTACAAAATATAATTTGTTATGTTTAGTTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD960943       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV528680       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY924552       --> ..................................................  Raphanus raphanistrum subsp. landra
EV569541       --> CGTAAAAGTTCTTCTTCCGTTACAAA-TATAATTTGTTATGTTTAGTTTT  Raphanus raphanistrum subsp. landra
EV538099       --> CGTAAAAGTTCTTCTTCCGTTACAGAATATAATTTTTTATGTTTAGTTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY898518       --> CGTAAAAGTTCTT.....................................  Raphanus raphanistrum subsp. maritimus
FD972136       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD981669       --> CGTAAA-GTTCTTCTTCCGTTACAGAATATAATTTTTTATGTTTAGTTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX895673       --> CGTAAAAGTTCTTCTTCCGTTACAAAATATAATTTGTTATGTTTAGTTTT  Raphanus sativus cv Early Scarlet Globe

               1051   -   1101
UN16255        --> AATGGGGTTCCTAGCATCATTCTTTTGATCAAATTATTCTTCTGTGTGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574063       <-- AATGGGGTTCCTAGCATCATTCTTTTGATCAAATTATTCTTCTGTGTGTA  Raphanus raphanistrum subsp. landra
EV542190       <-- AATGGTGTTCCTAGCATCATTCTTTTAATCAAATCATTCTTCTGTGTGc.  Raphanus raphanistrum subsp. raphanistrum (MS)
FD977384       <-- AATGGGGTTCCTAGCATCATTCTTTTAATCAAATTATTTTTCTGTGTG..  Raphanus raphanistrum subsp. raphanistrum (NY)
EV532603       <-- AATGGGGTTCCTAGCATCATTCTTTTGAcc....................  Raphanus raphanistrum subsp. maritimus
EX899715       <-- AATGGGGTTCCTAGCATCATTCTTTTGATCAAATTATTCTTCTGTGTGTT  Raphanus sativus cv Early Scarlet Globe
EY894557       <-- AATGGGGTTCCTAGCATCATTCTTTTGATCAAATTATTCTTCTGTGTGTA  Raphanus raphanistrum subsp. maritimus
FD968094       <-- AATAGGGTTCCTAGCATCATTCTTTTAATCAAATTATTCT--TGTGTGTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD960943       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV528680       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY924552       --> ..................................................  Raphanus raphanistrum subsp. landra
EV569541       --> AATGGGGTTCCTAGCATCATTCTTT-GATCAAAT-ATTCTTCTGTGTGTA  Raphanus raphanistrum subsp. landra
EV538099       --> AATGGTGTTCCTAGCATCATTCTTTTAATCAAATCATTCTTCTGTGTGc.  Raphanus raphanistrum subsp. raphanistrum (MS)
EY898518       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD972136       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD981669       --> Atg...............................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX895673       --> AATGGGGTTCCTAGCATCATTCTTTTGATCAAATTATTCTTCTGTGTGTT  Raphanus sativus cv Early Scarlet Globe

               1101   -   1151
UN16255        --> TTATAATCATTGTGTCTTTTGGAGATATCAGTATAATTATCTTAGCTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574063       <-- TTATAATCATTG--TCTTTTGGAGATATCAGTATAATTATCTTAGCTGAT  Raphanus raphanistrum subsp. landra
EV542190       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD977384       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV532603       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX899715       <-- TTATCATCATTATGTCTTTTGGAG..........................  Raphanus sativus cv Early Scarlet Globe
EY894557       <-- TTATAATCATTG--TCTTTTGGAGATATCAGTATAATTATCTTAGCTGAT  Raphanus raphanistrum subsp. maritimus
FD968094       <-- TTATAATCATTCTGTCTTTTGGAGATATCAGTATAATTATCTTAGCTGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD960943       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV528680       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY924552       --> ..................................................  Raphanus raphanistrum subsp. landra
EV569541       --> TTATAATCATTGT--C-TTTGGAGATATCAGTAT................  Raphanus raphanistrum subsp. landra
EV538099       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY898518       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD972136       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD981669       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX895673       --> TTATCATCATTATGTCTTTTGGAG..........................  Raphanus sativus cv Early Scarlet Globe

               1151   -   1201
UN16255        --> AATTATCATAATAATATTTACGAAATTCTATACATAGAATGCGTTTCTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574063       <-- AATTATCATAATAATATTTACGAAATTCTATACATAGAATGCGTTTCTGG
EV542190       <-- ..................................................
FD977384       <-- ..................................................
EV532603       <-- ..................................................
EX899715       <-- ..................................................
EY894557       <-- AATTATCATAATAATATTTACGAAATTCTATACATAGAATGCGTTTCTGG
FD968094       <-- AATTGTCATAATAATATTTACGCAATTATATCCATAGAATGCGTTTCcgg
FD960943       --> ..................................................
EV528680       --> ..................................................
EY924552       --> ..................................................
EV569541       --> ..................................................
EV538099       --> ..................................................
EY898518       --> ..................................................
FD972136       --> ..................................................
FD981669       --> ..................................................
EX895673       --> ..................................................

               1201   -   1251
UN16255        --> AGGTGTAATAATAAGTATCCTAGTAAAAGAAATGAAATCAGTATAAGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574063       <-- AGGTGTAATAATAAGTATCCTAGTAAAAGAAATGAAATCAGTATAAGTTT
EV542190       <-- ..................................................
FD977384       <-- ..................................................
EV532603       <-- ..................................................
EX899715       <-- ..................................................
EY894557       <-- AGGTGTAATAATAAGTATCCTAGTAAAAGAAATGAAATCAGTATAAGTTT
FD968094       <-- ..................................................
FD960943       --> ..................................................
EV528680       --> ..................................................
EY924552       --> ..................................................
EV569541       --> ..................................................
EV538099       --> ..................................................
EY898518       --> ..................................................
FD972136       --> ..................................................
FD981669       --> ..................................................
EX895673       --> ..................................................

               1251   -   1301
UN16255        --> AGCTC
                   ~~~~~
EV574063       <-- AGCTC
EV542190       <-- .....
FD977384       <-- .....
EV532603       <-- .....
EX899715       <-- .....
EY894557       <-- AGCc.
FD968094       <-- .....
FD960943       --> .....
EV528680       --> .....
EY924552       --> .....
EV569541       --> .....
EV538099       --> .....
EY898518       --> .....
FD972136       --> .....
FD981669       --> .....
EX895673       --> .....