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Alignment for radish unigene UN16270

               1      -     51
UN16270        --> GATGAAATGAAAAGTTTCCTTCTCGTTTATGTTGAAGATATAGTAATATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558042       <-- ...............................................ATG  Raphanus raphanistrum subsp. landra
FD568676       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY937907       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD548219       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD980356       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD971070       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY913150       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD554630       --> GATGAAATGAAAAGTTTCCTTCTCGTTTATGTTGAAGATATAGTAATATG  Raphanus raphanistrum subsp. landra
FD572983       --> .......................CGTTTATGTTGAAGATATAGTAAT--G  Raphanus sativus cv Early Scarlet Globe
EV531979       --> ............................ATGTTGAAGATATAGTAATATG  Raphanus raphanistrum subsp. maritimus
FD967293       --> ...........................ggTGTTGAAGATATAGTAATATG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY934147       --> ..............................gcTGAAGATATAGTAAT--G  Raphanus sativus cv Early Scarlet Globe
FD544432       --> .................................ggAGATATAGTAAT--G  Raphanus raphanistrum subsp. raphanistrum (NY)
EV529394       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY934374       --> ..................................................  Raphanus sativus cv Early Scarlet Globe

               51     -    101
UN16270        --> ATGAATGAAAACA-AATGTATAATGTTACAAAGAACAAAAACTCTTACCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558042       <-- ATGAATGAAAACA-AATGTATAATGTTACAAAGAACAAAAACTCTTACCC  Raphanus raphanistrum subsp. landra
FD568676       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY937907       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD548219       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD980356       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD971070       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY913150       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD554630       --> ATGAATGAAAACA-AATGTATAATGTTACAAAGAACAAAAACTCTTACCC  Raphanus raphanistrum subsp. landra
FD572983       --> ATGAATGAAAAAACAATGTATAATGTTACAAAGAACAAAAACTCTTACCC  Raphanus sativus cv Early Scarlet Globe
EV531979       --> ATGAATGAAAACA-AATGTATAATGTTACAAAGAACAAAAACTCTTACCC  Raphanus raphanistrum subsp. maritimus
FD967293       --> ATGAATGAAAACA-AATGTATAATGTTACAAAGAACAAAAACTCTTACCC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY934147       --> ATGAATGAAAAAACAATGTATAATGTTACAAAGAACAAAAACTCTTACCC  Raphanus sativus cv Early Scarlet Globe
FD544432       --> ATGAATGAAAAAACAATGTATAATGTTACAAAGAACAAAAACTCTTACCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV529394       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY934374       --> ..................................................  Raphanus sativus cv Early Scarlet Globe

               101    -    151
UN16270        --> ACTTGAGGATAAGAGAAACAAATTGAATTCTCAGAAGCTATCCATTATTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558042       <-- ACTTGAGGATAAGAGAAACAAATTGAATTCTCAGAAGCTATCCATTATTA
FD568676       <-- ..................................................
EY937907       <-- ..................................................
FD548219       <-- ..................................................
FD980356       <-- ..................................................
FD971070       <-- ..................................................
EY913150       <-- ..................................................
FD554630       --> ACTTGAGGATAAGAGAAACAAATTGAATTCTCAGAAGCTATCCATTATTA
FD572983       --> ACTTGAGGATAAGAGAAACAAATTGAATTCTCAGAAGCCATCCATTATTA
EV531979       --> ACTTGAGGATAAGAGAAACAAATTGAATTCTCAGAAGCTATCCATTATTA
FD967293       --> ACTTGAGGATAAGAGAAACAAATTGAATTCTCAGAAGCTATCCATTATTA
EY934147       --> ACTTGAGGATAAGAGAAACAAATTGAATTCTCAGAAGCTATCCATTATTA
FD544432       --> ACTTGAGGATAAGAGAAACAAATTGAATTCTCAGAAGCTATCCATTATTA
EV529394       --> ..................................................
EY934374       --> ..................................................

               151    -    201
UN16270        --> GAACTTTGCCAAATACAAAAACAAAATGACGAAAGAAAGTTGCAACTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558042       <-- GAACTT-GCCAAATACAAAAACAAAATGACGAAAGAAAGTTGCAACTTCT  Raphanus raphanistrum subsp. landra
FD568676       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY937907       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD548219       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD980356       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD971070       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY913150       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD554630       --> GAACTTTGCCAAATACAAAAACAAAATGACGAAAGAAAGTTGCAACTTCT  Raphanus raphanistrum subsp. landra
FD572983       --> GAACATTGCCAAATACAAAAACAAAATGGGGAAAGAAAGTTGCCTCTTCC  Raphanus sativus cv Early Scarlet Globe
EV531979       --> GAACTTTGCCAAATACAAAAACAAAATGACGAAAGAAAGTTGCAACTTCT  Raphanus raphanistrum subsp. maritimus
FD967293       --> GAACTTTGCCAAATACAAAAACAAAATGACGAAAGGAAGTTGCAACTTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY934147       --> GAACATTGCCAAATACAAAAACAAAATGGGGAAAGAAAGTTGCCTCTTCC  Raphanus sativus cv Early Scarlet Globe
FD544432       --> GAACATTGCCAAATACAAAAACAAAATGGGGAAAGAAAGTTGCCTCTTCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV529394       --> ................................aaaAAAGTTGCAACTTCT  Raphanus raphanistrum subsp. maritimus
EY934374       --> ..................................................  Raphanus sativus cv Early Scarlet Globe

               201    -    251
UN16270        --> ATTTTCTTCCTTTAGCCCATCATCTTGAAGATGTCTCCAAACATTCCTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558042       <-- ATCTTCTTCCTTTAGCCCATCATCTTGAAGATGTCTCCAAACATTCCTTG  Raphanus raphanistrum subsp. landra
FD568676       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY937907       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD548219       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD980356       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD971070       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY913150       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD554630       --> ATCTTCTTCCTTTAGCCCATCATCTTGAAGATGTCTCCAAACATTCCTTG  Raphanus raphanistrum subsp. landra
FD572983       --> ATTTTCTTCCTTTAGCCCATCATCTTGAAGATGTCTCCAAACATTCCTTG  Raphanus sativus cv Early Scarlet Globe
EV531979       --> ATCTTCTTCCTTTAGCCCATCATCTTGAAGATGTCTCCAAACATTCCTTG  Raphanus raphanistrum subsp. maritimus
FD967293       --> ATTTTCTTCCTTTAGCCCATCATCTTGAAGATGTCTCCAAACATTCCTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY934147       --> ATTTTCTTCCTTTAGCCCATCATCTTGAAGATGTCTCCAAACATTCCTTG  Raphanus sativus cv Early Scarlet Globe
FD544432       --> ATTTTCTTCCTTTAGCCCATCATCTTGAAGATGTCTCCAAACATTCCTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV529394       --> ATCTTCTTCCTTTAGCCCATCATCTTGAAAATGTCTCCAAACATTCCTTG  Raphanus raphanistrum subsp. maritimus
EY934374       --> ..................................................  Raphanus sativus cv Early Scarlet Globe

               251    -    301
UN16270        --> CAAAGGATTCTTACGCTGCACACCGTAAAACCTCTCTGCAATCTCGTCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558042       <-- CAAAGGATTCTTACGCTGAACACCGTAAAACCTCTCTGCAATCTCGTCCA  Raphanus raphanistrum subsp. landra
FD568676       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY937907       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD548219       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD980356       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD971070       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY913150       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD554630       --> CAAAGGATTCTTACGCTGAACACCGTAAAACCTCTCTGCAATCTCGTCCA  Raphanus raphanistrum subsp. landra
FD572983       --> CAAAGGATTCTTACGCTGCA-ACCGTAAAACCTCTCTGCAATCTCGTCCA  Raphanus sativus cv Early Scarlet Globe
EV531979       --> CAAAGGATTCTTACGCTGAACACCGTAAAACCTCTCTGCAATCTCGTCCA  Raphanus raphanistrum subsp. maritimus
FD967293       --> CAAAGGATTCTTACGCTGCACACCGTAAAACCTCTCTGCAATCTCGTCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY934147       --> CAAAGGATTCTTACGCTGCACACCGTAAAACCTCTCTGCAATCTCGTCCA  Raphanus sativus cv Early Scarlet Globe
FD544432       --> CAAAGGATTCTTACGCTGCACACCGTAAAACCTCTCTGCAATCTCGTCCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV529394       --> CAAAGGATTCTTACCCTGAACACCGTAAAACCTCTCTGCAATCTCGTCCA  Raphanus raphanistrum subsp. maritimus
EY934374       --> .........CTTACGCTGCACACCGTAAAACCTCTCTGCAATCTCGTCCA  Raphanus sativus cv Early Scarlet Globe

               301    -    351
UN16270        --> GCAACTCATTAAGCAGCGGTTCTCTATCTACGCAAGACCTAAATTTCGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558042       <-- GCAACTCATTAAGCAGCGGTTCTCTATCTACGCAAGACCTAAATTTCGCT
FD568676       <-- ........................................AAATTTCGCT
EY937907       <-- ..................................................
FD548219       <-- ..................................................
FD980356       <-- ..................................................
FD971070       <-- ..................................................
EY913150       <-- ..................................................
FD554630       --> GCAACTCATTAAGCAGCGGTTCTCTATCTACGCAAGACCTAAATTTCGCT
FD572983       --> GCAACTCATTAAGCAGCGGTTCTCTATCTACGCAAGACCTAAATTTCGCT
EV531979       --> GCAACTCATTAAGCAGCGGTTCTCTATCTACGCAAGACCTAAATTTCGCT
FD967293       --> GCAACTCATTAAGCAGCGGTTCTCTATCTACGCAAGACCTAAATTTCGCT
EY934147       --> GCAACTCATTAAGCAACGGTTCTCTATCTACGCAAGACCTAAATTTCGCT
FD544432       --> GCAACTCATTAAGCAGCGGTTCTCTATCTACGCAAGACCTAAATTTCGCT
EV529394       --> GCAACTCATTAAGCAGCGGTTCTCTATCTACGCAAGACCTAAATTTCGCT
EY934374       --> GCAACTCATTAAGCAGCGGTTCTCTATCTACGCAAGACCTAAATTTCGCT

               351    -    401
UN16270        --> CTTAACATACTGAAAAGAGGCAATGCATCTCTCTGCAACGTTTCCAGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558042       <-- CTTAACATACTGAAAAGAGGCAATGCATCTCTCTGCAACGTTTCCAGAAG  Raphanus raphanistrum subsp. landra
FD568676       <-- CTTAACATACTGAAAAGAGGCAATGCATCTCTCTGCAACGTTTCCAGAAG  Raphanus sativus cv Early Scarlet Globe
EY937907       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD548219       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD980356       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD971070       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY913150       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD554630       --> CTTAACATACTGAAAAGAGGCAATGCATCTCTCTGCAACGTTTCCAGAAG  Raphanus raphanistrum subsp. landra
FD572983       --> CTTAACATACTGAAAAGAGGCAATGCATCTCTCTGCAACGTTTCCAGAAA  Raphanus sativus cv Early Scarlet Globe
EV531979       --> CTTAACATACTGAAAAGAGGCAATGCATCT----GCAACGTTTCCAGAAA  Raphanus raphanistrum subsp. maritimus
FD967293       --> CTTAACATACTGAAAAGAGGCAATGCATCTCTCTGCAACGTTTCCAGAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY934147       --> CTTAACATACTGAAAAGAGGCAATGCATCTCTCTGCAACGTTTCCAGAAG  Raphanus sativus cv Early Scarlet Globe
FD544432       --> CTTAACATACTGAAAAGAGGCAATGCATCTCTCTGCAACGTTTCCAGAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV529394       --> CTTAACATACTGAAAAAAGGCAATGCATCTCTCTGCAACGTTTCCAAAAA  Raphanus raphanistrum subsp. maritimus
EY934374       --> CTTAACATACTGAAAAGAGGCAATGCATCTCTCTGCAACGTTTCCAGAAG  Raphanus sativus cv Early Scarlet Globe

               401    -    451
UN16270        --> ATAAGTGATAAATTGGATAAGGTCTGATTCTGAAAGGGTCTCTGCTTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558042       <-- ATAAGTGATAAATTGGATAAGGTCTGATTCTGAAAGGGTCTCTGCTTGTT  Raphanus raphanistrum subsp. landra
FD568676       <-- ATAAGTGATAAATCGGATAAGGTCTGATTCTGAAAGGGTCTCTGCTTGCT  Raphanus sativus cv Early Scarlet Globe
EY937907       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD548219       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD980356       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD971070       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY913150       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD554630       --> ATAAGTGATAAATTGGATAAGGGCTGATTCTGAAAGGGTCTCTGCTTGTT  Raphanus raphanistrum subsp. landra
FD572983       --> ATAAGTGATAAATCGGATAAGGTCTGATTCTGAAAGGGTCTCTGCTTGCT  Raphanus sativus cv Early Scarlet Globe
EV531979       --> ATAAGTGATAAATTGGATAAGGTCTGATTCTGAAAGGGTCTCTGCTTGTT  Raphanus raphanistrum subsp. maritimus
FD967293       --> ATAAGTGATAAATTGGATAAGGTCTGATTCTGAAAGGGTCTCCGCTTGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY934147       --> ATAAGTGATAAATTGGATAAGGTCTGATTCTGAAAGGGTCTCTGCTTGCT  Raphanus sativus cv Early Scarlet Globe
FD544432       --> ATAAGTGATAAATTGGATAAGGTCTGATTCTGAAAGGGTCTCTGCTTGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV529394       --> ATAAGTGATAAATTGGATAAGGTCTGATTCTGAAAGGGTCTCTGCTTGTT  Raphanus raphanistrum subsp. maritimus
EY934374       --> ATAAGTGATAAATTGGATAAGGGCTGATTCTGAAAGGGTCTCTGCTTGCT  Raphanus sativus cv Early Scarlet Globe

               451    -    501
UN16270        --> TCTTAATCTCATCCATCAGAATATTTGCATCTTTCATGTTACCCATAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558042       <-- TCTTAATCTCATCCATCAGAATATTTGCATCTTTCATGTTACCCATAGAT
FD568676       <-- TCTTAATCTCATCCATCAGAATATTTGCATCTTTCATGTTACCCATAGAT
EY937907       <-- .......CTCATCCATCAGAATATTTGCATCTTTCATGT-ACCCATAGAT
FD548219       <-- ..............ATCAGAATATT-GCATCTTTCATGTTACCCATAGAT
FD980356       <-- ..................................................
FD971070       <-- ..................................................
EY913150       <-- ..................................................
FD554630       --> TCTTAATCTCATCCATCAGAATATTTGCATCTTTCATGTTACCCATAGAT
FD572983       --> TCTTAATCTCATCCATCAAAATATTTGCATCTTTCATGTTACCCATAGAT
EV531979       --> TCTTAATCTCATCCATCAAAATATTTGCATCTTTCATGTTACCCATAGAT
FD967293       --> TCTTAATCTCATCCATCAGAACATTTGCATCTTTCATGTCACCCATAGAT
EY934147       --> TCTTAATCTCATCCATCAGAATATTTGCATCTTTCATGTTACCCATAGAT
FD544432       --> TCTTAATCTCATCCATCAGAATATTTGCATCTTTCATGTTACCCATAGAT
EV529394       --> TCTTAATCTCATCCATCAAAATATTTGCATCTTTCATGTTACCCATAAAT
EY934374       --> TCTTAATCTCATCCATGAGAATATTTGCATCTTTCATGTTACCCATAGAT

               501    -    551
UN16270        --> AAATACATAAGAACTGCTCGTGCGATGGCAAGGTCATCTTCACCAGGATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558042       <-- AAATACATAAGAACTGCTCGTGCAATGGCAAGGTCATCTTCACCAGGATA  Raphanus raphanistrum subsp. landra
FD568676       <-- AAATACATAAGAACTGCTCGTGCGATGGCAAGGTCATCTTCACCAGGATA  Raphanus sativus cv Early Scarlet Globe
EY937907       <-- AAATACATAAGAACTGCTCGTGCGATGGCAAGGTCATCTTCACCAGGATA  Raphanus sativus cv Early Scarlet Globe
FD548219       <-- AAATACATAAGAACTGCTCGTGCGATGGCAAGGTCATCTTCACCAGGATA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD980356       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD971070       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY913150       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD554630       --> AAATACATAAGAACTGCTCGTGCAATGGCAAGGTCATCTTCACCAGGATA  Raphanus raphanistrum subsp. landra
FD572983       --> AAATACATAAAAACTGCTCGTGCGATGGCAAGGTCATCTTCACCAGGATA  Raphanus sativus cv Early Scarlet Globe
EV531979       --> AAATACATAAAAACTGCTCGTGCAATGGCAAGGTCATCTTCACCAGGATA  Raphanus raphanistrum subsp. maritimus
FD967293       --> AAATACATAAGAACTGCTCGTGCAATAGCAAGGTCATCTTCGCCAGGATA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY934147       --> AAATACATAAGAACTGCTCGTGCGATGGCAAGGTCATCTTCACCAGGATA  Raphanus sativus cv Early Scarlet Globe
FD544432       --> AAATACATAAGAACTGCTCGTGCGATGGCAAGGTCATCTTCACCAGGATA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV529394       --> AAATACATAAAAACTGCTCGTGCAATGGCAAGGTCATCTTCACCAGGATA  Raphanus raphanistrum subsp. maritimus
EY934374       --> AAATACATAAGAACagc.................................  Raphanus sativus cv Early Scarlet Globe

               551    -    601
UN16270        --> ACACCTCCCCATAAAGTTGATCAGCATAGATGCAAACTTCTCAGGGTCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558042       <-- ACACCTTCCCATAAAGTTGATCAGCATAGATGCAAACTTCTCAGGGTCCT  Raphanus raphanistrum subsp. landra
FD568676       <-- ACACCTCCCCATAAAGTTGATCAGCATAGATGCAAACTTCACAGGGTCCT  Raphanus sativus cv Early Scarlet Globe
EY937907       <-- ACACCTCCCCATAAAGTTGATCAGCATAGATGCAAACTTCACAGGGTCCT  Raphanus sativus cv Early Scarlet Globe
FD548219       <-- ACACCTCCCCATAAAGTTGATCAGCATAGATGCAAACTTCACAGGGTCCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD980356       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD971070       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY913150       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD554630       --> ACACCTTCCCATAAAGTTGATCAGCATAGATGCAAACTTCTCAGGGTCCT  Raphanus raphanistrum subsp. landra
FD572983       --> ACACCTCCCCATAAAGTTGATCAGCATAGATGCAAACTTCACAGGGTCCT  Raphanus sativus cv Early Scarlet Globe
EV531979       --> ACACCTTCCCATAAAGTTGATCAGCATAAATGCAAACTTCTCAGGGTCCT  Raphanus raphanistrum subsp. maritimus
FD967293       --> ACACCTCCCCATAAAGTTGATCAGCATAGATGCAAACTTCTCAGGGTCCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY934147       --> ACACCTCCCCATAAAGTTGATCAGCATAGATGCAAACTTCACAGGGTCCT  Raphanus sativus cv Early Scarlet Globe
FD544432       --> ACACCTCCCCAT......................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV529394       --> ACACCTTCCCATAAAGTTGATCAGCATAAATGCAAACTTCTCAGGGTCCT  Raphanus raphanistrum subsp. maritimus
EY934374       --> ..................................................  Raphanus sativus cv Early Scarlet Globe

               601    -    651
UN16270        --> CGGCCCTAACAAAATGCCTTGATATTCGAACCATGTCAAGTTCAGGACAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558042       <-- CGGCCCTAACAAAATGCCTTGATATTCc......................
FD568676       <-- CGGCCCTAACAAAATGCCTTGATATTCGAACCATGTCAAGTTCAGGACAC
EY937907       <-- CGGCCCTAACAAAATGCCTTGATATTCGAACCATGTCAAGTTCAGGACAC
FD548219       <-- CGGCCCTAACAAAATGCCTTGATATTCGAACCATGTCAAGTTCAGGACAC
FD980356       <-- ..GCCCTAACAAAATGCCTTGATATTCGAACCATGTCAAGTTCAGGACAC
FD971070       <-- ...................TGATATTCGAACCATGTCAAGTTCAGGACAC
EY913150       <-- ..................................................
FD554630       --> CGGCCCTAACAAAATGCCTTGATATTCGAACCATGTCAAGTTCAGGACAC
FD572983       --> CGGCCCTAACAAAATGCCTTGATATTCGAACCATGTCAAGTTCAGGACAC
EV531979       --> CGGCCCTAACAAAATGCCTTGATATTCGAACCATGTCAAGTTCAGGACAC
FD967293       --> CGGCCCTAACAAAATGCCTTGATATTCGAACCATGTCAAGTTCAGGACAC
EY934147       --> CGGCCCTAACAAAATGCCTTGATATTCGAACCATGTCAAGTTCAGGACAC
FD544432       --> ..................................................
EV529394       --> CGGCCCTAACAAAATGCCTTGATAT.........................
EY934374       --> ..................................................

               651    -    701
UN16270        --> TCGGTGTAAAGATAATCAGCCAGCATAGCATGCAACTCAGGATACCCTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558042       <-- ..................................................
FD568676       <-- TCGGTGTAAAGATAATCAGCCAGCATAGCATGCAACTCAGGATACCCTGT
EY937907       <-- TCGGTGTAAAGATAATCAGCCAGCATAGCATGCAACTCAGGATACCCTGT
FD548219       <-- TCGGTGTAAAGATAATCAGCCAGCATAGCATGCAACTCAGGATACCCTGT
FD980356       <-- TCGGTGTAAAGATAATCAGCCAGCATAGCATGCAACTCAGGATACCCTGT
FD971070       <-- TCGGTGTAAAGATAATCAGCCAGCATAGCATGCAACTCAGGATACCCTGT
EY913150       <-- ..................................................
FD554630       --> TCGGTGTAAAGATAATCAGCTAGCATAGCATGCAACTCAGGATACCCTGT
FD572983       --> TCGGTGTAAAGATAATCAGCCAGCATAGCATGCAACTCAGGATACCCTGT
EV531979       --> TCGGTGTAAAGATAATCAGCTAGCATAGCATGCAACTCAGGATACCCTGT
FD967293       --> TCGGTGTAAAGATAATCAGCCAGCATAGCATGCAACTCAGGATACCCTGT
EY934147       --> TCGGTGTAAAGATAATCAGCCAGCATAGCATGCAACTCAGGATACCCTGT
FD544432       --> ..................................................
EV529394       --> ..................................................
EY934374       --> ..................................................

               701    -    751
UN16270        --> ACTTGGCCCTCCAAACTCCGCAGACCATCTTATAGCAGCTCTCAAGAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558042       <-- ..................................................
FD568676       <-- ACTTGGCCCTCCAAACTCCGCAGACCATCTTATAGCAGCTCTCAAGAAGG
EY937907       <-- ACTTGGCCCTCCAAACTCCGCAGACCATCTTACAGCAGCTCTCAAGAAGG
FD548219       <-- ACTTGGCCCTCCAAACTCCGCAGACCATCTTATAGCAGCTCTCAAGAAGG
FD980356       <-- ACTTGGCCCTCCAAACTCCGCAGACCATCTTATAGCAGCTCTCAAGAAGG
FD971070       <-- ACTTGGCCCTCCAAACTCCGCAGACCATCTTATAGCAGCTCTCAAGAAGG
EY913150       <-- ............................CTTATAGCAGCTCTCAAGAAGG
FD554630       --> ACTTGGCCCTCCAAACTCTGCAGACCATTTGATAGCAGCTCTCAAGAAGG
FD572983       --> ACTTGGCCCTCCAAACTCCGCAGACCATCTTATAGCAGCTCTCAAGAAGG
EV531979       --> ACTTGGCCCTCCAAACTCTGCAGACCATTTGATAGCAGCTCTCAAGAAGG
FD967293       --> AC................................................
EY934147       --> ACTTGGCCCTCCAAACTCCGCAGACCATCTTACAGCAGCTCTCAA.....
FD544432       --> ..................................................
EV529394       --> ..................................................
EY934374       --> ..................................................

               751    -    801
UN16270        --> AAGTCAAGTTATCAACACGTGATCTAGCTTCCCCAAGAGATTCTTGAATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558042       <-- ..................................................
FD568676       <-- AAGTCAAGTTATCAACACGTGATCTAGCTTCCCCAAGAGATTCTTGAATA
EY937907       <-- AAGTCAAGTTATCAACACGTGATCTAGCTTCCCCAAGAGATTCTTGAATA
FD548219       <-- AAGTCAAGTTATCAACACGTGATCTAGCTTCCCCAAGAGATTCTTGAATA
FD980356       <-- AAGTCAAGTTATCAACACGTGATCTAGCTTCCCCAAGAGATTCTTGAATA
FD971070       <-- AAGTCAAGTTATCAATACGTGATCTAGCTTCCCCAAGAGATTCTTGAATA
EY913150       <-- AAGTCAAGTTATCAACACGTGATCTAGCTTCCCCAAGAGATTCTTGAATA
FD554630       --> AAGTCAAGTTATCAACACGTGATCTAGCTTCCCCGAGAGATTCTTGA-GA
FD572983       --> AAGTCAAGTTATCAACACGTGATCTAGCTTCCCCAAGAGATTCTTGAATA
EV531979       --> AAGTCAAGTTATCAACACGTGATCTAGCTTCCCCGAGAGATTCTTGAAGA
FD967293       --> ..................................................
EY934147       --> ..................................................
FD544432       --> ..................................................
EV529394       --> ..................................................
EY934374       --> ..................................................

               801    -    851
UN16270        --> TTATGTACATCTTCATCATCGCTCACATCAACCAAATGAGGAGGTACAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558042       <-- ..................................................
FD568676       <-- TTATGTACATCTTCATTATCGCTCACATCAACCAAATGAGGAGGTACAGG
EY937907       <-- TTATGTACATCTTCATCACCGCTCACATCAACCAAATGAGGAGGTACAGG
FD548219       <-- TTATGTACATCTTCATCATCGCTCACATCAACCAAATGAGGAGGTACAGG
FD980356       <-- TTATGTACATCTTCATCATCGCTCACATCAACCAAATGAGGAGGTACAGG
FD971070       <-- TTATGAACATCCTCATCATCGCTCACATCAACCAAATGAGGAGGTACAGG
EY913150       <-- TTATGTACATCTTCATCATCGCTCACATCAACCAAATGAGGAGGTACAGG
FD554630       --> TTATGAACATCTTCGTCATCGCTCACATCAcca.................
FD572983       --> TTATGTACATCTTCATTATCGCTCACATCA-CCAAATGAGGAGGTACAGG
EV531979       --> TTATGAACATCTTCGTCATCGCTCACATCAACCAAATGAGGtgg......
FD967293       --> ..................................................
EY934147       --> ..................................................
FD544432       --> ..................................................
EV529394       --> ..................................................
EY934374       --> ..................................................

               851    -    901
UN16270        --> AACCCGAGGAAACAACTTGAACATACACCTGATACGATCAAGAGATTCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558042       <-- ..................................................
FD568676       <-- AACCCGAGGAAACAACTTGAACATACACCTGATACGATCAAGAGATTCAT
EY937907       <-- AACCCGAGGAAACAACTTGAACATACACCTGATACGATCAAGAGATTCAT
FD548219       <-- AACCCGAGGAAACAACTTGAACATACACCTGATACGATCAAGAGATTCAT
FD980356       <-- AACCCGAGGAAACAACTTGAACATACACCTGATACGATCAAGAGATTCAT
FD971070       <-- AACCCTAGGAAACAACTTGAACATACACCTGATACGATCAAGAGATTCAT
EY913150       <-- AACCCGAGGAAACAACTTGAACATACACCTGATACGATCAAGAGATTCAT
FD554630       --> ..................................................
FD572983       --> A-CCCGAGGAAAaa....................................
EV531979       --> ..................................................
FD967293       --> ..................................................
EY934147       --> ..................................................
FD544432       --> ..................................................
EV529394       --> ..................................................
EY934374       --> ..................................................

               901    -    951
UN16270        --> CATTGCAAGGTGACTTGGCTTTAACTAGTGTGTCGACAAACAAAATAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558042       <-- ..................................................
FD568676       <-- CATTGCAAGGTGACTTGGCTTTAACTAGTGTGTCGACAAACAAAATAGCA
EY937907       <-- CATTGCAAGGTGACTTGGCTTTAACTAGTGTGTCGACAAACAAAATAGCA
FD548219       <-- CATTGCAAGGTGACTTGGCTTTAACTAGTGTGTCGACAAACAAAATAGCA
FD980356       <-- CATTGCAAGGTGACTTGGCTTTAACTAGTGTGTCGACAAACAAAATAGCA
FD971070       <-- CATTGCAAGGTGACTTGGCTTTAACTAGTGTGTCGACAAACAAAATAGCA
EY913150       <-- CATTGCAAGGTGACTTGGCTTTAACTAGTGTGTCGACAAACAAAATAGCA
FD554630       --> ..................................................
FD572983       --> ..................................................
EV531979       --> ..................................................
FD967293       --> ..................................................
EY934147       --> ..................................................
FD544432       --> ..................................................
EV529394       --> ..................................................
EY934374       --> ..................................................

               951    -   1001
UN16270        --> AGGTCGGCTCCACAATTCACCAGGGCGTGCTCTAGCTCAACGCATGCCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558042       <-- ..................................................
FD568676       <-- AGGTCGGCTCCACAATTCACCAGGGCGTGCTCTAGCTCAACGCATGCCCC
EY937907       <-- AGGTCGGCTCCACAATTCACCAGGGCGTGCTCTAGCTCAAAGCATGCCCC
FD548219       <-- AGGTCGGCTCCACAATTCACCAGGGCGTGCTCTAGCTCAACGCATGCCCC
FD980356       <-- AGGTCGGCCCCACAATTCACAAGGCCGTGCTCTAGCTCAACGCATGCACC
FD971070       <-- AGGTCGGCCCCACAATTCACCAGGCCGTGCTCTAGCTCAACGCATGCCCC
EY913150       <-- AGGTCGGCTCCACAATTCACCAGGGCGTGCTCTAGCTCAACGCATGCCCC
FD554630       --> ..................................................
FD572983       --> ..................................................
EV531979       --> ..................................................
FD967293       --> ..................................................
EY934147       --> ..................................................
FD544432       --> ..................................................
EV529394       --> ..................................................
EY934374       --> ..................................................

               1001   -   1051
UN16270        --> TGAGAAGAGGATATCAAGAGCTTCAGAGAATCTCTGAGCTGTTACATATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558042       <-- ..................................................
FD568676       <-- ..................................................
EY937907       <-- TGAGAAGAGGATATAAAGAGCTTCAGAGAATCTCTGAGCTGTTACATATC
FD548219       <-- TGAGAAGAGGATATCAAGAGCTTCAGAGAATCTCTGAGCTGTTACATATC
FD980356       <-- TGAGAAGAGGATGTCAAGAGCTTCAGAGAATCTCTGAGCTGTAACATATC
FD971070       <-- TGAGAAGAGGATATCAAGAGCTTCAGAGAATCTCTGAGCTGTAACATATC
EY913150       <-- TGAGAAGAGGATATCAAGAGCTTCAGAGAA....................
FD554630       --> ..................................................
FD572983       --> ..................................................
EV531979       --> ..................................................
FD967293       --> ..................................................
EY934147       --> ..................................................
FD544432       --> ..................................................
EV529394       --> ..................................................
EY934374       --> ..................................................

               1051   -   1101
UN16270        --> TGGCACTGATGGATTTGTACATCTGCAAAGCTCCGTAGCCATTGCCTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558042       <-- ..................................................
FD568676       <-- ..................................................
EY937907       <-- TGGCACTGATGGATTTGTACATCTGCAAAGCTCCGTAGCCATTGCCTTCC
FD548219       <-- TGGCACTGATGGATTTGTACATCTGCAAAGCTCCGTAGCCATTGCCTTCC
FD980356       <-- TGGCACTGATGGATTTGTACATCTGCAACGCTCCGTAGCCATTGCCTTCC
FD971070       <-- TGGCACTGATGGATTTGTACATCTGCAAAGCTCCGTAGCCATTGCCTTCC
EY913150       <-- ..................................................
FD554630       --> ..................................................
FD572983       --> ..................................................
EV531979       --> ..................................................
FD967293       --> ..................................................
EY934147       --> ..................................................
FD544432       --> ..................................................
EV529394       --> ..................................................
EY934374       --> ..................................................

               1101   -   1151
UN16270        --> TCTACCACTTTCTTCAATTTATCAATATGCTCTTGAACGGGAGGTAGTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558042       <-- ..................................................
FD568676       <-- ..................................................
EY937907       <-- TCTACCACTTTCTTCAATTTATCAATATGCTCTTGAACGGGAGGTAGTTC
FD548219       <-- TCTACCACTTTCTTCAATTTATCAATATGCTCTTGAACGGGAGGTAGTTC
FD980356       <-- TCTACCACTTTCTTCAATTTATCAATATGCTCTTGAACGGGAGGTAGTTC
FD971070       <-- TCTACCACTTTCTTCAATTTATCAATATGCTCTTGAACGGGAGGTAGTTC
EY913150       <-- ..................................................
FD554630       --> ..................................................
FD572983       --> ..................................................
EV531979       --> ..................................................
FD967293       --> ..................................................
EY934147       --> ..................................................
FD544432       --> ..................................................
EV529394       --> ..................................................
EY934374       --> ..................................................

               1151   -   1201
UN16270        --> ACGTCTGGTTCTCTCTCTCGACATTTGGATCTTCTTTGATTGAGTTTTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558042       <-- ..................................................
FD568676       <-- ..................................................
EY937907       <-- ACGTCTGGTTCTCTCTCTCGACATT-GGGTCTTCTTTGATTGAGTTTTGC
FD548219       <-- ACGTCTGGTTCTCTCT--CGACA-TTGGATCTTCTTTGATTGAGTTTTGC
FD980356       <-- ACGTCTGGTTCTCTCTCTCGACATTTGGATCTTCTTTGATTGAGTTTTGC
FD971070       <-- ACGTCTGGTTCTCTCTCTCGACATTTGGATCTTCTTTGATTGAGTTTTGC
EY913150       <-- ..................................................
FD554630       --> ..................................................
FD572983       --> ..................................................
EV531979       --> ..................................................
FD967293       --> ..................................................
EY934147       --> ..................................................
FD544432       --> ..................................................
EV529394       --> ..................................................
EY934374       --> ..................................................

               1201   -   1251
UN16270        --> AGCTTCAATTGATTGATTGATTGGATCTTCCAATGTCTCTCTCTGTTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558042       <-- ..................................................
FD568676       <-- ..................................................
EY937907       <-- AGCTTCAATTGATTGA----TTGGATCTTCCTATGTCTCTCcc.......
FD548219       <-- AGCTTCAATTGATTGAT.................................
FD980356       <-- AGCTTCAATTGATTGATTGATTGGATCTTCCAATGTCTCTCTCTGTTTGG
FD971070       <-- AGCTTCAATTGATTGATTGATTGGATCTTCCAATcc..............
EY913150       <-- ..................................................
FD554630       --> ..................................................
FD572983       --> ..................................................
EV531979       --> ..................................................
FD967293       --> ..................................................
EY934147       --> ..................................................
FD544432       --> ..................................................
EV529394       --> ..................................................
EY934374       --> ..................................................

               1251   -   1301
UN16270        --> CAGATGATATATATTTATATATGGAAACTAAACAGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD558042       <-- .....................................
FD568676       <-- .....................................
EY937907       <-- .....................................
FD548219       <-- .....................................
FD980356       <-- CAGATGATATATATTTATATATGGAAACTAAACAGCC
FD971070       <-- .....................................
EY913150       <-- .....................................
FD554630       --> .....................................
FD572983       --> .....................................
EV531979       --> .....................................
FD967293       --> .....................................
EY934147       --> .....................................
FD544432       --> .....................................
EV529394       --> .....................................
EY934374       --> .....................................