Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN16273

               1      -     51
UN16273        --> AACTTAAAAGATTATTTGAAAAGGGCATATAACGATATTTTGTTGTATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572273       <-- ..................AAAAGGGCATATAACGATATTTTGTTGTATAT
FD535123       <-- ..............................................ATAT
FD549861       <-- ..................................................
FD548749       <-- ..................................................
FD544894       --> AACTTAAAAGATTATTTGAAAAGGGCATATAACGATATTTTGTTGTATAT
FD575947       --> ..................AAAAGGGCATATAACGATATTTTGTTGTATAT
FD574256       --> ...................AAAGGGCATATAACGATATTTTGTTGTATAT
FD545881       --> ..............................AACGATATTTTGTTGTATAT
AB447945       --> ..................................................

               51     -    101
UN16273        --> CTCAAAACTCAATATCTTGTTTCCCTGTAAGTTTGTGCCACAAGAAGGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572273       <-- CTCAAAACTCAATATCTTGTTTCCCTGCAAGTTTGTGCC-C-ACAAGGTT  Raphanus sativus cv Early Scarlet Globe
FD535123       <-- CTCAAAACTCAATATCTTGTTTCCCTGTAAGTTTGTGCCACAAGAAGGTT  Raphanus raphanistrum subsp. maritimus
FD549861       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD548749       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD544894       --> CTCAAAACTCAATATCTTGTTTCCCTGTAAGTTTGTGTCACAAGAAGGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD575947       --> CTCAAAACTCAATATCTTGTTTCCCTGCAAGTTTGTGCC-C-ACAAGGTT  Raphanus sativus cv Early Scarlet Globe
FD574256       --> CTCAAAACTCAATATCTTGTTTCCCTGCAAGTTTGTGCC-C-ACAAGGTT  Raphanus sativus cv Early Scarlet Globe
FD545881       --> CTCAAAACTCAATATCTTGTTTCCCTGTAAGTTTGTGCCACAAGAAGGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
AB447945       --> ..................................................  Raphanus sativus cv Sakurajima Daikon var. niger

               101    -    151
UN16273        --> CAATTATTCAGCACTCTCCAGGGAGAAAGATAACATAAAAAAAAA---CT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572273       <-- CAATTATTCAGCACTCTCCAGGGAGAAAGATAACATAAAAAAAAAAAACT
FD535123       <-- CAATTATTCAGCACTCTCCAGGGAGAAAGATAACATAAAAAAAAA---CT
FD549861       <-- ..................................................
FD548749       <-- ..................................................
FD544894       --> CAATTATTCAGCACTCTCCAGGGAGAAAGATAACATAAAAAAAAA---CT
FD575947       --> CAATTATTCAGCACTCTCCAGGGAGAAAGATAACATAAAAAAAAAAAACT
FD574256       --> CAATTATTCAGCACTCTCCAGGGCGAAAAATAACATAAAAAAAAA---CT
FD545881       --> CAATTATTCAGCACTCTCCAGGGAGAAAGATAACATAAAAAAAAA---CT
AB447945       --> ..................................................

               151    -    201
UN16273        --> CTTTCGTCTCTCTTCGTGACTTGCTTTGGTTAGATGCATGAAGGTGAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572273       <-- CTTTCGTCTCTCTTCGTGACTTGCTTTGGTTAGATGCATGAAGGTGAATC
FD535123       <-- CTTTCGTCTCTCTTCGTGACTTGCTTTGGTTAGATGCATGAAGGTGAATC
FD549861       <-- ..................................................
FD548749       <-- ..................................................
FD544894       --> CTTTCGTCTCTCTTCGTGACTTGCTTTGGTTAGATGCATGAAGGTGAATC
FD575947       --> CTTTCGTCTCTCTTCGTGACTTGCTTTGGTTAGATGCATGAAGGTGAATC
FD574256       --> CTTTCGTCTCTCTTCGTGACTTGCTTTGGTTAAATGCATGAAGGTGAATC
FD545881       --> CTTTCGTCTCTCTTCGTGACTTGCTTTGGTTAGATGCATGAAGGTGAATC
AB447945       --> ..................................................

               201    -    251
UN16273        --> AGTTCATTCTGCATCGACGCAGACACATCATCCAAAACTCCCAATGTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572273       <-- AGTTCATTCTGCATCGACGCAGACACATCATCCAAAACTCCCAATGTTGT
FD535123       <-- AGTTCATTCTGCATCGACGCAGACACATCATCCAAAACTCCCAATGTTGT
FD549861       <-- ..................................................
FD548749       <-- ..................................................
FD544894       --> AGTTCATTCTGCATCGACGCAGACACATCATCCAAAACTCCCAATGTTGT
FD575947       --> AGTTCATTCTGCATCGACGCAAACACATCATCCAAAACTCCCAATGTTGT
FD574256       --> AGTTCATTCTGCATCGACGCAAACACATCATCCAAAACTCCCAATGTTGT
FD545881       --> AGTTCATTCTGCATCGACGCAAACACATCATCCAAAACTCCCAATGTTGT
AB447945       --> ..................................................

               251    -    301
UN16273        --> GTGGGGGAATCTCTACTGTATCTTGAAGATGTTCTTCAGTTTTACAACTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572273       <-- GTGGGGGAATCTCTACTGTATCTTGAAGATGTTCTTCAGTTTTACAACTA
FD535123       <-- GTGGGGGAATCTCTACTGTATCTTGAAGATGTTCTTCAGTTTTACAACTA
FD549861       <-- ..................................................
FD548749       <-- ..................................................
FD544894       --> GTGGGGGAATCTCTACTGTATCTTGAAGATGTTCTTCAGTTTTACAACTA
FD575947       --> GTGGGGGAATCTCTACTGTATCTTGAAAATGTTCTTCAGTTTTACAACTA
FD574256       --> GTGGGGGAATCTCTACTGTATCTTGAAAATGTTCTTCAGTTTTACAACTA
FD545881       --> GTGGGGGAATCTCTACTGTATCTTGAAGATGTTCTTCAGTTTTACAACTA
AB447945       --> ..................................................

               301    -    351
UN16273        --> GCTTCCACTCATCCATGTTTAACTCATCCCTGTAGTTAGTTTTGAGTATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572273       <-- GCTTCCACTCATCCATGTTTAACTCATCCCTGTAGTTAGTTTTGAGTATG
FD535123       <-- GCTTCCACTCATCCATGTTTAACTCATCCCTGTAGTTAGTTTTGAGTATG
FD549861       <-- ..................................................
FD548749       <-- ..................................................
FD544894       --> GCTTCCACTCATCCATGTTTAACTCATCCCTGTAGTTAGTTTTGAGTATG
FD575947       --> GCTTCCACTCATCCATGTTTAACTCATCCCTGTAGTTAGTTTTGAGTATG
FD574256       --> GCTTCCACTCATCCATGTTTAACTCATCCCTGTAGTTAGTTTTGAGTATG
FD545881       --> GCTTCCACTCATCCATGTTTAACTCATCCCTGTAGTTAGTTTTGAGTATG
AB447945       --> ..................................................

               351    -    401
UN16273        --> TCGATAGATTTTCTGGAAATGTGACTCACAAGCTCATCTTCCATGTCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572273       <-- TCGATAGATTTTCTGGAAATGTGACTCACAAGCTCATCTTCCATGTCAAA  Raphanus sativus cv Early Scarlet Globe
FD535123       <-- TCGATAGATTTTCTCGAAATGTGACTCACAc...................  Raphanus raphanistrum subsp. maritimus
FD549861       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD548749       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD544894       --> TCGATAGATTTTCCCGAAATGTGACTCACAAGCTCATCCTCCATGTCAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD575947       --> TCGATAGATTTTCTGGAAATGTGACTCACAAGCTCATCTTCCATGTCAAA  Raphanus sativus cv Early Scarlet Globe
FD574256       --> TCGATAGATTTTCTGGAAATGTGACTCACAAGCTCATCTTCCATGTCAAA  Raphanus sativus cv Early Scarlet Globe
FD545881       --> TCGATAGATTTTCTCGAAATGTGACTCACAGGCTCATCTTCCATGTCAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
AB447945       --> ..................................................  Raphanus sativus cv Sakurajima Daikon var. niger

               401    -    451
UN16273        --> ATGCCTCCCAAACATCTTCTGCTCTTCAGGGTTTGAAGCAATAATCTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572273       <-- ATGCCTCCCAAACATCTTCTGCTCTTCAGGGTTTGAAGCAATAATCTTGA
FD535123       <-- ..................................................
FD549861       <-- ..................................................
FD548749       <-- ..................................................
FD544894       --> ATGCCTCCCAAACATCTTCTGCTCTTCAGGGTTTGAAGCAATAATCTTAA
FD575947       --> ATGCCTCCCAAACATCTTCTGCTCTTCAGGGTTTGAAGCAATAATCTTGA
FD574256       --> ATGCCTCCCAAACATCTTCTGCTCTTCAGGGTTTGAAGCAATAATCTTGA
FD545881       --> ATGCCTCCCAAACATCTTCTGCTCTTCAGGGTTTGAAGCAATAATCTTAA
AB447945       --> ..................................................

               451    -    501
UN16273        --> TAGCCACCTGGGTGCCTTTCTTTGCATAGTCAACAGGCTTGTGGTTGTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572273       <-- TAGCCACCTGGGTGCCTTTCTTTGCATAGTCAACAGGCTTGTGGTTGTTC
FD535123       <-- ..................................................
FD549861       <-- ...................CTTTGCATAGTCAACAGGCTTGTGGTTGTTC
FD548749       <-- ..................................................
FD544894       --> TAGCCACTTGGGTACCCTTCTTTGCATAGTCAACAGGCTTGTGGTTGTTC
FD575947       --> TAGCCACCTGGGTGCCTTTCTTTGCATAGTCAACAGGCTTGTGGTTGTTC
FD574256       --> TAGCCACCTGGGTGCCTTTCTTTGCATAGTCAACAGGCTTGTGGTTGTTC
FD545881       --> TAGCCACCTGGGTACCCTTCTTTGCATAGTCAACAGGCTTGTGGTTGTTC
AB447945       --> ..................................................

               501    -    551
UN16273        --> TCAATAGAGGCAATGCGGCCAATATCGATAAACTCTCTACTCGGGACGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572273       <-- TCAATAGAGGCAATGCGGCCAATATCGATAAACTCTCTACTCGGGACGCA  Raphanus sativus cv Early Scarlet Globe
FD535123       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD549861       <-- TCAATAGAGGCAATACGGCCAATATCGATAAACTCTCTACTCGGGACGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD548749       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD544894       --> TCAATAGAGGCAATACGGCCAATATCGATAAACTCTCTACTCGGGACGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD575947       --> TCAATAAAGGCAATGCGGCCAATATCGATAAACTCTCTACTCGGGACGCA  Raphanus sativus cv Early Scarlet Globe
FD574256       --> TCAATAAAGGCAATGCGGCCAATATCGATAAACTCTCTACTCGG......  Raphanus sativus cv Early Scarlet Globe
FD545881       --> TCAATAAAGGCAATACGGCCAATATCGATAAACTCTCTACTCGGGACGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
AB447945       --> ..................................................  Raphanus sativus cv Sakurajima Daikon var. niger

               551    -    601
UN16273        --> GATGGGAGTTCCAATCTTAAGTACACCCTCGACGACGTCAACTCCAAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572273       <-- GATGGGAGTTCCAATCTTAAGTACACCCTCGACGACGTCAACTCCAAGGA
FD535123       <-- ..................................................
FD549861       <-- GATGGGAGTTCCAATCTTAAGTACACCCTCGACGACGTCAACTCCAAGGA
FD548749       <-- ..................................................
FD544894       --> GATGGGAGTCCCAATCTTAAGTACACCCTCGACGACGTCAACTCCAAGGA
FD575947       --> AATGGGAGTTCCAATCTTAAGTACACCCTCGACGACGTCAACTCCAAGGA
FD574256       --> ..................................................
FD545881       --> AATGGGAGTTCCAATCTTAAGTACACCCTCGACGACGTCAACTCCAAGGA
AB447945       --> ......................ACACCCTCGACGACGTCAACTCCAAGGA

               601    -    651
UN16273        --> CAATTGGATCTCTCTTATTGAACACACAGTTGGGTAAAATCCTAAGGACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572273       <-- CAATTGGATCTCTCTTATTGAACACACAGTTGGGTAAAATCCTAAGGACA
FD535123       <-- ..................................................
FD549861       <-- CAATTGGATCTCTCTTATTGAACACACAGTTGGGTAAAATCCTAAG-ACA
FD548749       <-- ..................................................
FD544894       --> CAATTGGATCTCTCTTATTGAACACACAGTTGGGTAAAATCCTAAGGACA
FD575947       --> CAATTGGATCTCTCTTATTGAACACACAGTTGGGTAAAATCCTAAGGACA
FD574256       --> ..................................................
FD545881       --> CAATTGGATCTCTCTTATTGAACACACAGTTGGGTAAAATCCTAAG-ACA
AB447945       --> CAATTGGATCTCTCTTATTGAAAACACAGTTGGGTAAAATCCTAAGGACA

               651    -    701
UN16273        --> CATGGGAAGACTGCTTCATCGGCTGATTCCTTCTTCTTCTCCTCTTTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572273       <-- CATGGGAAGACTGCTTC.................................
FD535123       <-- ..................................................
FD549861       <-- CATGGGAAGACTGCTTCATCGGCTGATTCCTTCTTCTTCTCCTCTTTGAT
FD548749       <-- ..................................................
FD544894       --> CATGGGAAGACTGCTTCATCGGCTGATTCCTTCTTCTTCTCCTCTTTGAT
FD575947       --> CATGGGAAGACTGCTTC.................................
FD574256       --> ..................................................
FD545881       --> CATGGGAAGACTGCTTCATCGGCTGATTCCTTCTTCTTCTCCTCTTTGAT
AB447945       --> CATGGGAAGACTGCTTCATCGGCTGATTCCTTCTTCTTCTCCTCTTTGAT

               701    -    751
UN16273        --> ACTCTCGATATACGCCTTGAACTGGTCGAACAAATGGTAGATGATATCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572273       <-- ..................................................
FD535123       <-- ..................................................
FD549861       <-- ACTCTCGATATACGCCTTGAACTGGTCGAACAAATGGTAGATGATATCAG
FD548749       <-- ..................................................
FD544894       --> ACTCTCGATATACGCCTTGAACTGGTCGAACAAATGGTAGATGATATCAG
FD575947       --> ..................................................
FD574256       --> ..................................................
FD545881       --> ACTCTCGATATACGCCTTGAACTGGTCGAACAAATGGTAGATGATATCAG
AB447945       --> ACTCTCGATATACGCCTTGAACTGGTCGAACAAATGGTAGATGATATCAG

               751    -    801
UN16273        --> CGCAGAAGATCTTAACTCCCATCTCGTCCGCGAGCTCTCGAGCGTCCGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572273       <-- ..................................................
FD535123       <-- ..................................................
FD549861       <-- CGCAGAAGATCTTAACTCCCATCTCGTCCGCGAGCTCTCGAGCGTCCGTG
FD548749       <-- ..................................................
FD544894       --> CGCAGAAGATCTTAACTCCCATCTCGTCCGCGAGCTCTCGAGCGTC-GTG
FD575947       --> ..................................................
FD574256       --> ..................................................
FD545881       --> CGCAGAAGATCTTAACTCCCATCTCGTCCGCGAGCTCTCGAGCGTCCGTG
AB447945       --> CGCAGAAGATCTTTACTCCCATCTTGTCAGCGAGCTCGCGAGCGTCTGTG

               801    -    851
UN16273        --> GTCACTTTCACGTCGAAAGCCAAGATCGTGGCGTATTCCTTCTTCCTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572273       <-- ..................................................
FD535123       <-- ..................................................
FD549861       <-- GTCACTTTCACGTCGAAAGCCAAGATCGTGGCGTATTCCTTCTTCCTCTC
FD548749       <-- ...........................................TCCTCTC
FD544894       --> GTCACTTTCACGTCGAAAGCCA-GATCGTGc...................
FD575947       --> ..................................................
FD574256       --> ..................................................
FD545881       --> GTCACTTTCACGTCGAAAGCCA-GATCGT.....................
AB447945       --> GTCACTTTCACGTCGAAAGCCAAGATCGTGGCGTATTCCTTCTTCCTCTC

               851    -    901
UN16273        --> GAGCATCACTCCCGCTTTCATGATGTCTTTCTTGTGCACGGGCCCTATGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572273       <-- ..................................................
FD535123       <-- ..................................................
FD549861       <-- GAGCATCACTCCCGCCTTCATGATGTCCTTCTTGTGCACGGGCCCTATGC
FD548749       <-- GAGCATCACTCCCGCTTTCATGATGTCTTTCTTGTGCACGGGCCCTATGC
FD544894       --> ..................................................
FD575947       --> ..................................................
FD574256       --> ..................................................
FD545881       --> ..................................................
AB447945       --> GAGC..............................................

               901    -    951
UN16273        --> CGATACCGCTGACGGGTATCTTTACAGCTGGGGACTTCAAGAACTCGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572273       <-- ..................................................
FD535123       <-- ..................................................
FD549861       <-- CGATACCGCTGACGGGTATCTTTACAGCTGGGGACTTCAAGAACTCGAGC
FD548749       <-- CGATACCGCTGACGGGTATCTTTACAGCTGGGGACTTCAAGAACTCGAGC
FD544894       --> ..................................................
FD575947       --> ..................................................
FD574256       --> ..................................................
FD545881       --> ..................................................
AB447945       --> ..................................................

               951    -   1001
UN16273        --> AAGGCTTCCAGTGACCCTAGCGTAGACGCTTGTACGTAAACTCCTTCGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572273       <-- ..................................................
FD535123       <-- ..................................................
FD549861       <-- AAGGCTTCCAGTGACCCTAGCGTAGACGCTTGTACGTAAACTCCTTCGCC
FD548749       <-- AAGGCTTCCAGTGACCCTAGCGTAGACGCTTGTACGTAAACTCCTTCGCC
FD544894       --> ..................................................
FD575947       --> ..................................................
FD574256       --> ..................................................
FD545881       --> ..................................................
AB447945       --> ..................................................

               1001   -   1051
UN16273        --> GCTTTTGTCGATCCTGCTCTAAACTGACTCCATGTCTTCCATTGCCTGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572273       <-- ..................................................
FD535123       <-- ..................................................
FD549861       <-- GCTTTTGTCGATCCTGCTCAAAACTGACTCCATGTCTTCCATTGCCTGCT
FD548749       <-- GCTTTTGTCGATCCTGCTCTAAACTGACTCCATGTCTTCCATTGCCTGCT
FD544894       --> ..................................................
FD575947       --> ..................................................
FD574256       --> ..................................................
FD545881       --> ..................................................
AB447945       --> ..................................................

               1051   -   1101
UN16273        --> CCTTGATTGCTTCGATGTCATCATCGGGTCCAATCACGTGCAGTGCAGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572273       <-- ..................................................
FD535123       <-- ..................................................
FD549861       <-- CCTTGATTGCTTCGATGTCATCATCGGGTCCAATCACGTGCAGTGCAGTG
FD548749       <-- CCTTGATTGCTTCGATGTCATCATCGGGTCCAATCACGTGCAGTGCAGTG
FD544894       --> ..................................................
FD575947       --> ..................................................
FD574256       --> ..................................................
FD545881       --> ..................................................
AB447945       --> ..................................................

               1101   -   1151
UN16273        --> CCAGCAATAGCGTGTTCAAGGCCCTGGGCAGTGATTTTAATACCCTGTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572273       <-- ..................................................
FD535123       <-- ..................................................
FD549861       <-- CCAGCAATAGCGTGTTCAAGGCCCTGGGCAGTGATTTTAATACCCTGc..
FD548749       <-- CCAGCAATAGCGTGTTCAAGGCCCTGGGCAGTGATTTTAATACCCTGTGC
FD544894       --> ..................................................
FD575947       --> ..................................................
FD574256       --> ..................................................
FD545881       --> ..................................................
AB447945       --> ..................................................

               1151   -   1201
UN16273        --> TGCCTTTATTTCTTTGTGATGCGCATAAGTACCCTTCACCCGTAGCTCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572273       <-- ..................................................
FD535123       <-- ..................................................
FD549861       <-- ..................................................
FD548749       <-- TGCCTTTATTTCTTTGTGATGCGCATAAGTACCCTTCACCCGTAGCTCCT
FD544894       --> ..................................................
FD575947       --> ..................................................
FD574256       --> ..................................................
FD545881       --> ..................................................
AB447945       --> ..................................................

               1201   -   1251
UN16273        --> TCATTGGATGAGGAGTCAGTAACGCTCTGATCGTTGTGTCTATAGGTCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572273       <-- ..................................................
FD535123       <-- ..................................................
FD549861       <-- ..................................................
FD548749       <-- TCATTGGATGAGGAGTCAGTAACGCTCTGATCGTTGTGTCTATAGGTCCC
FD544894       --> ..................................................
FD575947       --> ..................................................
FD574256       --> ..................................................
FD545881       --> ..................................................
AB447945       --> ..................................................

               1251   -   1301
UN16273        --> TGTAACCCACACACGACGATCTGATCACCTTCATGAAGCACACCGTTTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572273       <-- ..................................................
FD535123       <-- ..................................................
FD549861       <-- ..................................................
FD548749       <-- TGTAACCCACACACGACGATCTGATCACCTTCATGAAGCACACCGTTTAC
FD544894       --> ..................................................
FD575947       --> ..................................................
FD574256       --> ..................................................
FD545881       --> ..................................................
AB447945       --> ..................................................

               1301   -   1351
UN16273        --> CAATACAACATCAATCGTTGTACCATGGCCTTCGATAACTTTGACCTCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572273       <-- ..................................................
FD535123       <-- ..................................................
FD549861       <-- ..................................................
FD548749       <-- CAATACAACATCAATCGTTGTACCATGGCCTTCGATAACTTTGACCTCAG
FD544894       --> ..................................................
FD575947       --> ..................................................
FD574256       --> ..................................................
FD545881       --> ..................................................
AB447945       --> ..................................................

               1351   -   1401
UN16273        --> GACAGTACACTGCACTTCGTCAACATATGTAAGCTTCTCAACCATTGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572273       <-- ..................................................
FD535123       <-- ..................................................
FD549861       <-- ..................................................
FD548749       <-- GACAGTACACTGCACTTCGTCAACATATGTAAGCTTCTCAACCATTGTTT
FD544894       --> ..................................................
FD575947       --> ..................................................
FD574256       --> ..................................................
FD545881       --> ..................................................
AB447945       --> ..................................................

               1401   -   1451
UN16273        --> TCTGAGCCCAGTTAACCAACAACAGCAAAAGATCTGGGATCCCTTCCCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD572273       <-- ..................................................
FD535123       <-- ..................................................
FD549861       <-- ..................................................
FD548749       <-- TCTGAGCCCAGTTAACCAACAACAGCAAAAGATCTGGGATCCCTTCCCCA
FD544894       --> ..................................................
FD575947       --> ..................................................
FD574256       --> ..................................................
FD545881       --> ..................................................
AB447945       --> ..................................................

               1451   -   1501
UN16273        --> GTAATAGCACC
                   ~~~~~~~~~~~
FD572273       <-- ...........
FD535123       <-- ...........
FD549861       <-- ...........
FD548749       <-- GTAATAGCACC
FD544894       --> ...........
FD575947       --> ...........
FD574256       --> ...........
FD545881       --> ...........
AB447945       --> ...........