1      -     51
UN16281        --> GGGCGCATCAGATAAACGGCTCAAAAAGCAAAAAAAGAAAG-AAAAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910714       <-- ..................................................
EW730338       <-- ..................................................
EX899155       <-- ..................................................
EY933898       <-- ..................................................
EY911471       <-- ..................................................
EY902396       <-- ..................................................
EY914726       --> GGGCGCATCAGATAAACGGCTCAAAAAGCAAAAAA-GAAAGGAAAAAAAA
EY906136       --> ..ggGCATCAGATAAACGGCTCAAAAAGCAAAAAAAGAAAG-AAAAAAAA
FD541385       --> ..ggGCATCAGATAAACGGCTCAAAAAGCAAAAAAAGAAAG-AAAAAAAA
EW725046       --> ......................................ggaaagAAAAAA
EX894903       --> ......................................ggaaagAAAAAA
EY937623       --> ..................................................
EY931403       --> ..................................................

               51     -    101
UN16281        --> AAGTTCTGTGGGAAGATGCAGCCGACAGAGGCGACAAGGCCGGCGACGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910714       <-- ............................................GACGGC
EW730338       <-- .................................................C
EX899155       <-- ..................................................
EY933898       <-- ..................................................
EY911471       <-- ..................................................
EY902396       <-- ..................................................
EY914726       --> AAGTTCTGTGGGAAGATGCGGCCGACAGAGGCGACAAGGCCGGCGACGGC
EY906136       --> AAGTTCTGTGGGAAGATGCAGCCGACAGAGGCGACAAGGCCGGCGACGGC
FD541385       --> AAGTTCTGTGGGAAGATGCAGCCGACAGAGGCGACAAGGCCGGCGACGGC
EW725046       --> AAGTTCTGTGGGAAGATGCAGCCGACAGAGGCGACACGGCCGGCGACGGC
EX894903       --> AAGTTCTGTGGGAAGATGCAGCCGACAGAGGCGACACGGCCGGCGACGGC
EY937623       --> ..................................................
EY931403       --> ..................................................

               101    -    151
UN16281        --> GGAACAGAGCCGGCGACTAAAGGATGAGCTATCGGAGAGCATGAGCTTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910714       <-- GGAACAGAGCCGGCGACTAAAGGATGAGCTATCGGAGAGCATGAGCTTCA
EW730338       <-- GGAACAGAGCCGGCGACTAAAGGATGAGCTATCGGAGAGCATGAGCTTCA
EX899155       <-- ........................TGAGCTATCGGAGAGCATGAGCTTCA
EY933898       <-- ..................................................
EY911471       <-- ..................................................
EY902396       <-- ..................................................
EY914726       --> GGAACAGAGCCGGCGACTAAAGGATGAGCTATCGGAGAGCATGAGCTTCA
EY906136       --> GGAACAGAGCCGGAGACTAAAGGATGAGCTATCGGAGAGCATGAGCTTCA
FD541385       --> GGAACAGAGCCGGAGACTAAAGGATGAGCTATCGGAGAGCATGAGCTTCA
EW725046       --> GGAACAGAGCCGGCGACTAAAGGATGAGCTATCGGAGAGCATGAGCTTCA
EX894903       --> GGAACAGAGCCGGCGACTAAAGGATGAGCTATCGGAGAGCATGAGCTTCA
EY937623       --> ..................................................
EY931403       --> ..................................................

               151    -    201
UN16281        --> GCAGCCAAATGAAGAAGGAAGACGAGGAGCTGTCGGTGAAAGCTCTGTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910714       <-- GCAGCCAAATGAAGAAGGAAGACGAGGAGCTGTCGGTGAAAGCTCTGTCG
EW730338       <-- GCAGCCAAATGAAGAAGGAAGACGAGGAGCTGTCGGTGAAAGCTCTGTCG
EX899155       <-- GCAGCCAAATGAAGAAGGAAGACGAGGAGCTGTCGGTGAAAGCTCTGTCG
EY933898       <-- ...............................................TCG
EY911471       <-- ................................................CG
EY902396       <-- ..................................................
EY914726       --> GCAGCCAAATGAAGAAGGAAGACGAGGAGCTGTCGGTGAAAGCTCTGTCG
EY906136       --> GCAGCCAAATGAAGAAGGAAGACGAGGAGCTGTCGGTGAAAGCTCTGTCG
FD541385       --> GCAGCCAAATGAAGAAGGAAGACGAGGAGCTGTCGGTGAAAGCTCTGTCG
EW725046       --> GCAGCCAAATGAAGAAGGAAGACGAGGAGCTGTCGGTGAAAGCTCTGTCG
EX894903       --> GCAGCCAAATGAAGAAGGAAGACGAGGAGCTGTCGGTGAAAGCTCTGTCG
EY937623       --> ..................................................
EY931403       --> ..................................................

               201    -    251
UN16281        --> GCGTTCAAGGCGAAAGAAGATGAGATCGAGAAGAAGAAGATGGAGATCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910714       <-- GCGTTCAAGGCGAAAGAAGATGAGATCGAGAAGAAGAAGATGGAGATCAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW730338       <-- GCGTTCAAGGCGAAAGAAGACGAGATCGAGAAGAAGAAGATGGAGATCAG  Raphanus sativus cv Early Scarlet Globe
EX899155       <-- GCGTTCAAGGCGAAAGAAGACGAGATCGAGAAGAAGAAGATGGAGATCAG  Raphanus sativus cv Early Scarlet Globe
EY933898       <-- GCGTTCAAGGCGAAAGAAGACGAGATCGAGAAGAAGAAGATGGAGATCAG  Raphanus sativus cv Early Scarlet Globe
EY911471       <-- GCGTTCAAGGCGAAAGAAGATGAGATCGAGAAGAAGAAGATGGAGATCAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY902396       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY914726       --> GCGTTCAAGGCGAAAGAAGATGAGATCGAGAAGAAGAAGATGGAGATCAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY906136       --> GCGTTCAAGGCGAAAGAAGATGAGATCGAGAAGAAGAAGATGGAGATCAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541385       --> GCGTTCAAGGCGAAAGAAGATGAGATCGAGAAGAAGAAGATGGAGATCAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EW725046       --> GCGTTCAAGGCGAAAGAAGACGAGATCGAGAAGAAGAAGATGGAGATCAG  Raphanus sativus cv Early Scarlet Globe
EX894903       --> GCGTTCAAGGCGAAAGAAGACGAGATCGAGAAGAAGAAGATGGAGATCAG  Raphanus sativus cv Early Scarlet Globe
EY937623       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY931403       --> ..................................................  Raphanus sativus var. oleiformis

               251    -    301
UN16281        --> AGAACGAGTTTTAGCTCAGCTCGGCCGTGTTGAAGACGAGACCAAGCGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910714       <-- AGAACGAGTTTTAGCTCAGCTCGGCCGTGTTGAAGACGAGACCAAGCGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EW730338       <-- AGAACGAGTTTTAGCTCAGCTAGGCCGTGTTGAAGACGAGACCAAGCGTC  Raphanus sativus cv Early Scarlet Globe
EX899155       <-- AGAACGAGTTTTAGCTCAGCTAGGCCGTGTTGAAGACGAGACCAAGCGTC  Raphanus sativus cv Early Scarlet Globe
EY933898       <-- AGAACGAGTTTTAGCTCAGCTAGGCCGTGTTGAAGACGAGACCAAGCGTC  Raphanus sativus cv Early Scarlet Globe
EY911471       <-- AGAACGAGTTTTAGCTCAGCTCGGCCGTGTTGAAGACGAGACCAAGCGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY902396       <-- .....................CGGCCGTGTTGAAGACGAGACCAAGCGTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY914726       --> AGAACGAGTTTTAGCTCAGCTCGGCCGTGTTGAAGACGAGACCAAGCGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY906136       --> AGAACGAGTTTTAGCTCAGCTCGGCCGTGTTGAAGACGAGACCAAGCGTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541385       --> AGAACGAGTTTTAGCTCAGCTCGGCCGTGTTGAAGACGAGACCAAGCGTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EW725046       --> AGAACGAGTTTTAGCTCAGCTAGGCCGTGTTGAAGACGAGACCAAGCGTC  Raphanus sativus cv Early Scarlet Globe
EX894903       --> AGAACGAGTTTTAGCTCAGCTAGGCCGTGTTGAAGACGAGACCAAGCGTC  Raphanus sativus cv Early Scarlet Globe
EY937623       --> ...................ctaGGCCGTGTTGAAGACGAGACCAAGCGTC  Raphanus sativus cv Early Scarlet Globe
EY931403       --> ..................................................  Raphanus sativus var. oleiformis

               301    -    351
UN16281        --> TCGCTTTGATCCGCGAGGAACTTGAAGGATTTGCTGATCCCATGAGGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910714       <-- TCGCTTTGATCCGCGAGGAACTTGAAGGATTTGCTGATCCCATGAGGAAG
EW730338       <-- TCGCTTTGATCCGCGAGGAACTTGAAGGATTTGCTGATCCCATGAGGAAG
EX899155       <-- TCGCTTTGATCCGCGAGGAACTTGAAGGATTTGCTGATCCCATGAGGAAG
EY933898       <-- TCGCTTTGATCCGCGAGGAACTTGAAGGATTTGCTGATCCCATGAGGAAG
EY911471       <-- TCGCTTTGATCCGCGAGGAACTTGAAGGATTTGCTGATCCCATGAGGAAG
EY902396       <-- TCGCTTTGATCCGCGAGGAACTTGAAGGATTTGCTGATCCCATGAGGAAG
EY914726       --> TCGCTTTGATCCGCGAGGAACTTGAAGGATTTGCTGATCCCATGAGGAAG
EY906136       --> TCGCTTTGATCCGCGAGGAACTTGAAGGATTTGCTGATCCCATGAGGAAG
FD541385       --> TCGCTTTGATCCGCGAGGAACTTGAAGGATTTGCTGATCCCATGAGGAAG
EW725046       --> TCGCTTTGATCCGCGAGGAACTTGAAGGATTTGCTGATCCCATGAGGAAG
EX894903       --> TCGCTTTGATCCGCGAGGAACTTGAAGGATTTGCTGATCCCATGAGGAAG
EY937623       --> TCGCTTTGATCCGCGAGGAACTTGAAGGATTTGCTGATCCCATGAGGAAG
EY931403       --> ..................................................

               351    -    401
UN16281        --> GAAGTCACTTTGATCCGGAAGAAGATTGATTCTCTCGATAAAGAGATTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910714       <-- GAAGTCACTTTGATCCGGAAGAAGATTGATTCTCTCGATAAAGAGATTAA
EW730338       <-- GAAGTCACTTTGATCCGGAAGAAGATTGATTCTCTCGATAAAGAGATTAA
EX899155       <-- GAAGTCACTTTGATCCGGAAGAAGATTGATTCTCTCGATAAAGAGATTAA
EY933898       <-- GAAGTCACTTTGATCCGTAAGAAGATTGATTCTCTCGATAAAGAGATTAA
EY911471       <-- GAATTCACTTTGATCCGGAAGAAGATTGATTCTCTCGATAAAGAGATTAA
EY902396       <-- GAAGTCACTTTGATCCGGAAGAAGATTGATTCTCTCGATAAAGAGATTAA
EY914726       --> GAAGTCACTTTGATCCGGAAGAAGATTGATTCTCTCGATAAAGAGATTAA
EY906136       --> GAAGTCACTTTGATCCGGAAGAAGATTGATTCTCTCGATAAAGAGATTAA
FD541385       --> GAAGTCACTTTGATCCGGAAGAAGATTGATTCTCTCGATAAAGAGATTAA
EW725046       --> GAAGTCACTTTGATCCGGAAGAAGATTGATTCTCTCGATAAAGAGATTAA
EX894903       --> GAAGTCACTTTGATCCGGAAGAAGATTGATTCTCTCGATAAAGAGATTAA
EY937623       --> GAAGTCACTTTGATCCGTAAGAAGATTGATTCTCTCGATAAAGAGATTAA
EY931403       --> ..................................................

               401    -    451
UN16281        --> ACCATTGGGGAATACTGTTCAGAAAAAG-----GAAGTAGAGTACAAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910714       <-- ACCATTGGGGAATACTGTTCAGAAAAAG-----GAAGTAGAGTACAAGGA
EW730338       <-- ACCATTGGGGAATACTGTTCAGAAAAAGTGCAGGAAGTAGAGTACAAGGA
EX899155       <-- ACCATTGGGGAATACTGTTCAGAAAAAGTGCAGGAAGTAGAGTACAAGGA
EY933898       <-- ACCATTGGGGAATACTGTTCAGAAAAAG-----GAAGTAGAGTACAAGGA
EY911471       <-- ACCATTGGGGAATACTGTTCAGAAAAAG-----GAAGTAGAGTACAAGGA
EY902396       <-- ACCATTGGGGAATACTGTTCAGAAAAAG-----GAAGTAGAGTACAAGGA
EY914726       --> ACCATTGGGGAATACTGTTCAGAAAAAG-----GAAGTAGAGTACAAGGA
EY906136       --> ACCATTGGGGAATACTGTTCAGAAAAAG-----GAAGTAGAGTACAAGGA
FD541385       --> ACCATTGGGGAATACTGTTCAGAAAAAG-----GAAGTAGAGTACAAGGA
EW725046       --> ACCATTGGGGAATACTGTTCAGAAAAAGTGCAGGAAGTAGAGTACAAGGA
EX894903       --> ACCATTGGGGAATACTGTTCAGAAAAAGTGCAGGAAGTAGAGTACAAGGA
EY937623       --> ACCATTGGGGAATACTGTTCAGAAAAAG-----GAAGTAGAGTACAAGGA
EY931403       --> ..................................................

               451    -    501
UN16281        --> TGCGCTTGAAGCATTTAACGAAAAGAACAAGGAGAAGGTGGAGCTGATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910714       <-- TGCACTTGAAGCATTTAACGAAAAGAACAAGGAGAAGGTGGAGCTGATCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW730338       <-- TGCGCTTGAAGCATTTAACGAAAAGAACAAGGAGAAGGTGGAGCTGATCA  Raphanus sativus cv Early Scarlet Globe
EX899155       <-- TGCGCTTGAAGCATTTAACGAAAAGAACAAGGAGAAGGTGGAGCTGATCA  Raphanus sativus cv Early Scarlet Globe
EY933898       <-- TGCGCTTGAAGCATTTAACGAAAAGAACAAGGAGAAGGTGGAGCTGATCA  Raphanus sativus cv Early Scarlet Globe
EY911471       <-- TGCACTTGAAGCATTTAACGAAAAGAACAAGGAGAAGGTGGAGCTGATCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY902396       <-- TGCACTTGAAGCATTTAATGAAAAGAACAAGGAGAAGGTGGAGCTGATCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY914726       --> TGCACTTGAAGCATTTAACGAAAAGAACAAGGAGAAGGTGGAGCTGATCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY906136       --> TGCACTTGAAGCATTTAATGAAAAGAACAAGGAGAAGGTGGAGCTGATCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541385       --> TGCACTTGAAGCATTTAATGAAAAGAACAAGGAGAAGGTGGAGCTGATCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EW725046       --> TGCGCTTGAAGCATTTAACGAAAAGAACAAGGAGAAGGTGGAGCTGATCA  Raphanus sativus cv Early Scarlet Globe
EX894903       --> TGCGCTTGAAGCATTTAACGAAAAGAACAAGGAGAAGGTGGAGCTGATCA  Raphanus sativus cv Early Scarlet Globe
EY937623       --> TGCGCTTGAAGCATTTAACGAAAAGAACAAGGAGAAGGTGGAGCTGATCA  Raphanus sativus cv Early Scarlet Globe
EY931403       --> ................................................ga  Raphanus sativus var. oleiformis

               501    -    551
UN16281        --> CCAAGCTACAGGAGTTGGAGGGAGAGAGCGAAAAAATGAGATTAAAGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910714       <-- CCAAGCTACAGGAGTTGGAGGGAGAGAGCGAGAAAATGAGATTAAAGAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW730338       <-- CCAAGCTACAGGAGTTGGAGGGAGAGAGCGAAAAAATGAGATTAAAGAAG  Raphanus sativus cv Early Scarlet Globe
EX899155       <-- CCAAGCTACAGGAGTTGGAGGGAGAGAGCGAAAAAATGAGATTAAAGAAG  Raphanus sativus cv Early Scarlet Globe
EY933898       <-- CCAAGCTACAGGAGTTGGAGGGAGAGAGCGAAAAAATGAGATTAAAGAAG  Raphanus sativus cv Early Scarlet Globe
EY911471       <-- CCAAGCTACAGGAGTTGGAGGGAGAGAGCGAGAAAATGAGATTAAAGAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY902396       <-- CCAAGCTACAGGAGTTGGAGGGAGAGAGCGAAAAAATGAGATTAAAGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY914726       --> CCAAGCTACAGGAGTTGGAGGGAGAGAGCGAGAAAATGAGATTAAAGAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY906136       --> CCAAGCTACAGGAGTTGGAGGGAGAGAGCGAAAAAATGAGATTAAAGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541385       --> CCAAGCTACAGGAGTTGGAGGGAGAGAGCGAAAAAATGAGATTAAAGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EW725046       --> CCAAGCTACAGGAGTTGGAGGGAGAGAGCGAAAAAATGAGATTAAAGAAG  Raphanus sativus cv Early Scarlet Globe
EX894903       --> CCAAGCTACAGGAGTTGGAGGGAGAGAGCGAAAAAATGAGATTAAAGAAG  Raphanus sativus cv Early Scarlet Globe
EY937623       --> CCAAGCTACAGGAGTTGGAGGGAGAGAGCGAAAAAATGAGATTAAAGAAG  Raphanus sativus cv Early Scarlet Globe
EY931403       --> gtggaaaccaagacagagacGGAGAGAGCGAGAAAATGAGATTAAAGAAG  Raphanus sativus var. oleiformis

               551    -    601
UN16281        --> CTGGAAGAGCTAAGCAAGAACATTGATCTAACCAAAGGTTAGTGTTGGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910714       <-- CTGGAAGAGCTAAGCAAGAACATTGATCTAACCAAAGGTTAGTGTTGGAC
EW730338       <-- CCGGAAGAGCTAAGCAAGAACATTGATCTAACCAAAGGTTAGTGTTGGAC
EX899155       <-- CCGGAAGAGCTAAGCAAGAACATTGATCTAACCAAAGGTTAGTGTTGGAC
EY933898       <-- CTGGAAGAGCTAAGCAAGAACATTGATCTAACCAAAGGTTAGTGTTGGAC
EY911471       <-- CTGGAAGAGCTAAGCAAGAACATTGATCTAACCAAAGGTTAGTGTTGGAC
EY902396       <-- CTGGAAGAGCTAAGCAAGAACATTGATCTAACCAAAGGTTAGTGTTGGAC
EY914726       --> CTGGAAGAGCTAAGCAAGAACATTGATCTAACCAAAG-TTAGTGTTGGAC
EY906136       --> CTGGAAGAGCTAAGCAAGAACATTGATCTAACCAAAGGTTAGTGTTGGAC
FD541385       --> CTGGAGGAGCTAAGCAAGAACATTGATCTAACCAAAGGTTAGTGTTGGAC
EW725046       --> CCGGAAGAGCTAAGCAAGAACATTGATCTAACCAAAGGTTAGTGTTGGAC
EX894903       --> CCGGAAGAGCTAAGCAAGAACATTGATCTAACCAAAGGTTAGTGTTGGAC
EY937623       --> CTGGAAGAGCTAAGCAAGAACATTGATCTAACCAAAGGTTAGTGTTGGAC
EY931403       --> CTGGAAGAGCTAAGCAAGAACATTGATCTAACCAAAGGTTAGTGTTGGAC

               601    -    651
UN16281        --> GAGCAGACTCACTTGGATTGGGCTAATATTATATGTGGTAAATCATGGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910714       <-- GAGCAGACTCACTTGGATTGGGCTAATATTATATGTGGTAAATCATGGT-  Raphanus raphanistrum subsp. raphanistrum (NY)
EW730338       <-- GAGCAGACTCATTTGGATTGGGCTAATATTATATGTGGTAAATCATGGTT  Raphanus sativus cv Early Scarlet Globe
EX899155       <-- GAGCAGACTCATTTGGATTGGGCTAATATTATATGTGGTAAATCATGGTT  Raphanus sativus cv Early Scarlet Globe
EY933898       <-- GAGCAGACTCATTTGGATTGGGCTAATATTATATGTGGTAAATCATGGTT  Raphanus sativus cv Early Scarlet Globe
EY911471       <-- GAGCAGACTCACTTGGATTGGGCTAATATTATATGTGGTAAATCATGGT-  Raphanus raphanistrum subsp. raphanistrum (NY)
EY902396       <-- GAGCAGACTCACTTGGATTGGGCTAATATTATATGTGGTAAATCATGATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY914726       --> GAGCAGACTCACTTGGATTGGGCTAATATTATATGTGGTAA-TCATGGT-  Raphanus raphanistrum subsp. raphanistrum (NY)
EY906136       --> GAGCAGACTCACTTGGATTGGGCTAATATTATATGTGGTAAATCATGATT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541385       --> GAGCAGACTCACTTGGATTGGGCTAATATTATATGTGGTAAATCATGGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW725046       --> GAGCAGACTCATTTGGATTGGGCTAATATTATATGTGGTAAATCATGGTT  Raphanus sativus cv Early Scarlet Globe
EX894903       --> GAGCAGACTCATTTGGATTGGGCTAATATTATATGTGGTAAATCATGGTT  Raphanus sativus cv Early Scarlet Globe
EY937623       --> AAGCAGACTCATTTGGATTGGGCTAATATTATATGTGGTAAATCATGGTT  Raphanus sativus cv Early Scarlet Globe
EY931403       --> GAGCAGACTCACTTGGATTGGGCTAATATTATATGTGGTAAATCATGGT-  Raphanus sativus var. oleiformis

               651    -    701
UN16281        --> AGAGTATTTTCATTGTTCTTTCTATCATTCTAGTCGTATATCATTTCAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910714       <-- AGAGTATTTTCATTGTTCTTTCTATCATTCTAGTCGTATATCATTTCAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW730338       <-- AGAGTATTTTCATTGTTCTTTCTATCTTTCTAGTCGCATATCATATCA-T  Raphanus sativus cv Early Scarlet Globe
EX899155       <-- AGAGTATTTTCATTGTTCTTTCTATCTTTCTAGTCGCATATCATATCA-T  Raphanus sativus cv Early Scarlet Globe
EY933898       <-- AGAGTATTTTCATTGTTCTTTCTATCTTTCTAGTCGCATATCATATCA-T  Raphanus sativus cv Early Scarlet Globe
EY911471       <-- AGAGTATTTTCATTGTTCTTTCTATCATTCTAGTCGTATATCATTTCAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY902396       <-- AGAGTATTTTCATTGTTCTTTCTATCATTCTAGTCGTATATCATTTCAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY914726       --> AGAGTATTTTCATTGTTCTTTCTATCATTCTAGTCGTATATCATTTCAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY906136       --> AGAGTATTTTCATTGTTCTTTCTATCATTCTAGTCGTATATCATTTCAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541385       --> AGAGTATTTTCATTGTTCTTTCTATCATTCTAGTCGTATATCATTTCAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW725046       --> AGAGTATTTTCATTGTTCTTTCTATCTTTCTAGTCGCATATCATATCA-T  Raphanus sativus cv Early Scarlet Globe
EX894903       --> AGAGTATTTTCATTGTTCTTTCTATCTTTCTAGTCGCATATCATATCA-T  Raphanus sativus cv Early Scarlet Globe
EY937623       --> AGAGTATTTTCATTGTTCTTTCTA..........................  Raphanus sativus cv Early Scarlet Globe
EY931403       --> AGGGTATTTTCATTGTTCTTTCTATCATTCTAGTCGTATATCATTTCAAT  Raphanus sativus var. oleiformis

               701    -    751
UN16281        --> ATATAAAATTAAATAAAAAGTAATAGT-GAATGGTTTTGAACTCGAGTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910714       <-- ATATAAAATTAAATAAAAAGTAATAGT-GAATGGTTTTGAACTCGAGTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW730338       <-- ATATAAAATTAAATAAAAAGTAATAGTTGAATGGTTTTGAACTCGAGTGT  Raphanus sativus cv Early Scarlet Globe
EX899155       <-- ATATAAAATTAAATAAAAAGTAATAGTTGAATGGTTTTGAACTCGAGTGT  Raphanus sativus cv Early Scarlet Globe
EY933898       <-- ATATAAAATTAAATAAAAAGTAATAGTTGAATGGTTTTGAACTCGAGTGT  Raphanus sativus cv Early Scarlet Globe
EY911471       <-- ATATAAAATTAAATAAAAAGTAATAGT-GAATGGTTTTGAACTCGAGTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY902396       <-- ATATA-----AAATAAAAAGTAATAGT-GAATGGTTTTGAACTCGAGTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY914726       --> ATATAAAATTAAATAAAA-GTAATAGT-GAATGGTTTTGAACTCGAGTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY906136       --> ATATAAAAT------AAAAGTAATAGT-GAATGGTTTTGAACTCGAGTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541385       --> ATATAAAAT-----AAAAAGTAATAGT-GAATGGTTTTGAACTCGAGTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW725046       --> ATATAAAATTAAATAAAAAGTAATAGTTGAATGGTTTTGAACTCGAGTGT  Raphanus sativus cv Early Scarlet Globe
EX894903       --> ATATAAA-TTAAATAAAA-GTAATA.........................  Raphanus sativus cv Early Scarlet Globe
EY937623       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY931403       --> ATATAAAATTAAATAAAAAGTAATAGT-GAATGGTTTTGAACTCGAGTGT  Raphanus sativus var. oleiformis

               751    -    801
UN16281        --> TTCAGAAAAAAGCATGTAACCAGTTTACAATGTCAAGACGTTATCGATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910714       <-- TTCAGAAAAAAGCATGTAACCAGTTTATAATGTCAAGACGTTATCGATGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW730338       <-- TTCATAAAAAAACATGTAACCAGTTTACAATGTCAAGACGTTATCGATGT  Raphanus sativus cv Early Scarlet Globe
EX899155       <-- TTCATAAAAAAACATGTAACCAGTTTACAATGTCAAGACGTTATCGATGT  Raphanus sativus cv Early Scarlet Globe
EY933898       <-- TTCATAAAAAAACATGTAACCAGTTTACAATGTCAAGACGTTATCGATGT  Raphanus sativus cv Early Scarlet Globe
EY911471       <-- TTCAGAAAAAAGCATGTAACCAGTTTATAATGTCAAGACGCTATCGATGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY902396       <-- TTCAGAAAAAAGCATGTAACCAGTTTACAATGTCAAGACGTTATCGATGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY914726       --> TTCAGA............................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY906136       --> TTCAGAAAAA-GCATGTAACCAGTT-AC-ATGTC-AGACGTTATCGATGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541385       --> TTCAGAAAAA-GCATGTAACCAGTTTACAATGTCAAGACGTTATCGATGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW725046       --> TTCATAAAAAA-CATGTAACCAGTTTACAATGTCA-GACGTTATCGATGT  Raphanus sativus cv Early Scarlet Globe
EX894903       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY937623       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY931403       --> TTCAGAAAAAAGCATGTAACCAGTTTACAATGTCAAGACGTTATCGATGT  Raphanus sativus var. oleiformis

               801    -    851
UN16281        --> GATTCCCAAATTTGTATTATAATAAATGTAAAAAACACTATGTTTGTTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910714       <-- GATTCCCAAATTTGTATTATAATAAATGTAAAAAA--CTATGTTTGTTCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW730338       <-- GATTCGCAAATTTGTATTATAATAAATGTAAAAAAAACTATGTTTGTTCG  Raphanus sativus cv Early Scarlet Globe
EX899155       <-- GATTCGCAAATTTGTATTATAATAAATGTAAAAAAAACTATGTTTGTTCG  Raphanus sativus cv Early Scarlet Globe
EY933898       <-- GATTCGCAAATTTGTATTATAATAAATGTAAAAAAAACTATGTTTGTTCG  Raphanus sativus cv Early Scarlet Globe
EY911471       <-- GATTCCCAAATTTGTATTATAATAAATGTAAAAAACtatttttgtt....  Raphanus raphanistrum subsp. raphanistrum (NY)
EY902396       <-- GATTCCCAAATTTGTATTATAATAAATGT.....................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY914726       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY906136       --> GAT...............................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541385       --> GATTCCCAAATTTGTATTATAATAA.........................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW725046       --> G.................................................  Raphanus sativus cv Early Scarlet Globe
EX894903       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY937623       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY931403       --> GATTCCCAAATTTGTATTATAATAAAAATGTAAAAAACTATGTTTGTTCG  Raphanus sativus var. oleiformis

               851    -    901
UN16281        --> TGGGT
                   ~~~~~
EY910714       <-- TGGGT
EW730338       <-- TGGGc
EX899155       <-- TGGGc
EY933898       <-- TGGGT
EY911471       <-- .....
EY902396       <-- .....
EY914726       --> .....
EY906136       --> .....
FD541385       --> .....
EW725046       --> .....
EX894903       --> .....
EY937623       --> .....
EY931403       --> TGGGT