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Alignment for radish unigene UN16304

               1      -     51
UN16304        --> ATAATTTGTTTTCTTTACATCAATATACATTAATTTAGTGTCCTCGGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV534950       <-- ..................................................
EY948129       <-- ..................................................
FD579915       <-- ..................................................
EV529522       --> ATAATTTGTTTTCTTTACATCAATATACATTAATTTAGTGTCCTCGGAGG
EV530022       --> ATAATTTGTTTTCTTTACATCAATATACATTAATTTAGTGTCCTCGGAGG
EY943890       --> ATAATTTGTTTTCTTTACATCAATATACATTAATTTAGTGTCCTCGGAGG
FD581042       --> ATAATTTGTTTTCTTTACATCAATATACATTAATTTAGTGTCCTCGGAGG
FD583811       --> ATAATTTGTTTTCTTTACATCAATATACATTAATTTAGTATCCTCGGAGG
EV539733       --> ..................................................

               51     -    101
UN16304        --> AATTGGATTGATCAAAAGAAACAATTAGAGATTGTTCACTGTATGTGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV534950       <-- ..................................................
EY948129       <-- ..................................................
FD579915       <-- ..................................................
EV529522       --> AATTGGATTGATCAAAAGAAACAATTAGAGATTGTTCACTGTATGTGAAG
EV530022       --> AATTGGATTGATCAAAAGAAACAATTAGAGATTGTTCACTGTATGTGAAG
EY943890       --> AATTGGATTGATCAAAAGAAACAATTAGAGATTGTTCACTGTATGTGAAG
FD581042       --> AATTGGATTGATCAAAAGAAACAATTAGAGATTGTTCACTGTATGTGAAG
FD583811       --> AATTGGATTGATCAAAAGAAACAATTAGAGATTGTTCACTGTATGTGAAG
EV539733       --> ..................................................

               101    -    151
UN16304        --> AATATGTGAAGAATACAGAGCTGCGCCAAGTCTAGGAAGCTGTTTCAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV534950       <-- ..................................................
EY948129       <-- ..................................................
FD579915       <-- ..................................................
EV529522       --> AATATGTGAAGAATACAGAGCTGCGCCAAGTCTAGGAAGCTGTTTCAATG
EV530022       --> AATATGTGAAGAATACAGAGCTGCGCCAAGTCTAGGAAGCTGTTTCAATG
EY943890       --> AATATGTGAAGAATACAGAGCTGCGCCAAGTCTAGGAAGCTGTTTCAATG
FD581042       --> AATATGTGAAGAATACAGAGCTGCGCCAAGTCTAGGAAGCTGTTTCAATG
FD583811       --> AATATGTGAAGAATACAGAGCTG...........................
EV539733       --> ..................................................

               151    -    201
UN16304        --> GTCTTGATACATTCAAGAACAGATGCATTGTTGGACATTGCAGCCATTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV534950       <-- ..................................................
EY948129       <-- ..................................................
FD579915       <-- ..................................................
EV529522       --> GTCTTGATACATTCAAGAACAGATGCATTGTTGGACATTGCAGCCATTAG
EV530022       --> GTCTTGATACATTCAAGAACAGATGCATTGTTGGACATTGCAGCCATTAG
EY943890       --> GTCTTGATACATTCAAGAACAGATGCATTGTTGGACATTGCAGCCATTAG
FD581042       --> GTCTTGATACATTCAAGAACAGATGCATTGTTGGACATTGCAGCCATTAG
FD583811       --> ..................................................
EV539733       --> ..................................................

               201    -    251
UN16304        --> AGCTTCATGGATGGTCTTGTTGTTCTTTAGAAGAGAAGCAGAGTAAAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV534950       <-- ..................................................
EY948129       <-- ..................................................
FD579915       <-- ..................................................
EV529522       --> AGCTTCATGGATGGTCTTGTTGTTCTTTAGAAGAGAAACAGAGTAAAGAA
EV530022       --> AGCTTCATGGATGGTCTTGTTGTTCTTTAGAAGAGAAGCAGAGTAAAGAA
EY943890       --> AGCTTCATGGATGGTCTTGTTGTTCTTTAGAAGAGAAGCAGAGTAAAGAA
FD581042       --> AGCTTCATGGATGGTCTTGTTGTTCTTTAGAAGAGAAGCAGAGTAAAGAA
FD583811       --> ..................................................
EV539733       --> ..................................................

               251    -    301
UN16304        --> CAGCCCATCTAGTTAGATTTTGCTGCTGTTCATTGCTGATTTTAGGTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV534950       <-- ..................................................
EY948129       <-- ..................................................
FD579915       <-- ..................................................
EV529522       --> CAGCCCATCAAGTTAGATTTTGCTGCTGTTCATTGCTGATTTTAGGTTGG
EV530022       --> CAGCCCATCTAGTTAGATTTTGCTGCTGTTCATTGCTGATTTTAGGTTGG
EY943890       --> CAGCCCATCTAGTTAGATTTTGCTGCTGTTCACTGCTGATTTTAGGTTGG
FD581042       --> CAGCCCATCTAGTTAGATTTTGCTGCTGTTCATTGCTGATTTTAGGTTGG
FD583811       --> ..................................................
EV539733       --> ..................................................

               301    -    351
UN16304        --> CTCCTGTTGATGAACCTCTGAAGAGAGAAAAGATCCGCAGATTGGCCGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV534950       <-- .........................................attGCCGAT
EY948129       <-- ..................................................
FD579915       <-- ..................................................
EV529522       --> CTCCTGTTGATGAACCTCTGAAGAGAGAAAAGATCCGCAAATTGGCCGAT
EV530022       --> CTCCTGTTGATGAACCTCTGAAGAGAGAAAAGATCCGCAGATTGGCCGAT
EY943890       --> CTCCTGTTGATGAACCTCTGAAGAGAGAAAAGATCCGCAGATTGGCCGAT
FD581042       --> CTCCTGTTGATGAACCTCTGAAGAGAGAAAAGATCCGCAAATTGGCCGAT
FD583811       --> ..................................................
EV539733       --> ....................................GCAGATTGGCCGAT

               351    -    401
UN16304        --> CACTTTGTCATACTTCAGACCCTCGGCGGCAAGTCCAGCCATTGCAACAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV534950       <-- CACTT-GTCATACTTCAGACCCTCGGCGGCA-GTCCAGCCATTGCAACAG
EY948129       <-- ..................................................
FD579915       <-- ..................................................
EV529522       --> CACTTTGTCATACTTCAAACCCTCGGCGGCAAGTCCAGCCATTGCAACAG
EV530022       --> CACTTTGTCATACTTCAGACCCTCGGCGGCAAGTCCAGCCATTGCAACAG
EY943890       --> CACTTTGTCATACTTCAGACCCTCGGCGGCAAGTCCAGCCATTGCAACAG
FD581042       --> CACTTTGTCATACTTCAAACCCTCGGCGGCAAGTCCAGCCATTGCAACAG
FD583811       --> ..................................................
EV539733       --> CACTTTGTCATACTTCAGACCCTCGGCGGCA-GTCCAGCCATTGCAACAG

               401    -    451
UN16304        --> CAGCCAACCTGTCAAGCTCCTTAGAGTCAAGCTGACCGCTGTATATTAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV534950       <-- CAGCCAAC-TATCAAGCTC-TTAGAGTCAAGCTGACCGCTGTATATTAGT
EY948129       <-- .......................GAGTCAAGCTGACCGCTGTATATTAGT
FD579915       <-- ..................................................
EV529522       --> CAGCCAACCTGTCAAGCTCCTTAGAGTCAAGCTGACCGCTGTATATTAGT
EV530022       --> CAGCCAACCTGTCAAGCTCCTTAGAGTCAAGCTGACCGCTGTATATTAGT
EY943890       --> CAGCCAACCTGTCAAGCTCCTTAGAGTCAAGCTGACCGCTGTATATTAGT
FD581042       --> CAGCCAACCTGTCAAGCTCCTTAGAGTCAAGCTGACCGCTGTATATTAGT
FD583811       --> ..................................................
EV539733       --> CAGCCAACCTATCAAGCTCCTTAGAGTCAAGCTGACCGCTGTATATTAGT

               451    -    501
UN16304        --> TTAGCAAGCCTCTCGTCGATGAGATTAACGTGTTCTTTACCAATATCTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV534950       <-- TTAGCAAGCCTCTCGTCGATGAGATTAACGTGTTCTTTACCAATATCTAA
EY948129       <-- TTAGCAAGCCTCTCGTCGATGAGATTAACGTGTTCTTTACCAATATCTAA
FD579915       <-- .........................................AATATCTAA
EV529522       --> TTAGCAAGCCTCTCGTCGATGAGATTAACGTGTTCTTTACCAATATCTAA
EV530022       --> TTAGCAAGCCTCTCGTCGATGAGATTAACGTGTTCTTTACCAATATCTAA
EY943890       --> TTAGCAAGCCTCTCGTCGATGAGATTAACGTGTTCTTTACCAATATCTAA
FD581042       --> TTAGCAAGCCTCTCGTCGATGAGATTAACGTGTTCTTTACCAATATCTAA
FD583811       --> ..................................................
EV539733       --> TTAGCAAGCCTCTCGTCGATGAAATTAACGTGTTCTTTACCAATATCTAA

               501    -    551
UN16304        --> CGAGTAGCCGAGGATCGGAAGTCCAATTAAGTAAGCCACTAAGAAGTGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV534950       <-- CGAGTAGCCGAGGATCGGAAGTCCAATTAAGTAAGCCACTAAGAAGTGGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY948129       <-- CGAGTAGCCGAGGATCGGAAGTCCAATTAAGTAAGCCACTAAGAAGTGGG  Raphanus sativus cv Rat-Tail Radish #3870
FD579915       <-- CGAGTAGCCGAGGATCGGAAGTCCAATTAAGTAAGCCACTAAGAAGTGGG  Raphanus sativus cv Rat-Tail Radish #3870
EV529522       --> CGAGTAGCCGAGGATTGGAAGTCCAATTAAGTAAGCCACTAAGAAGTGGG  Raphanus raphanistrum subsp. maritimus
EV530022       --> CGAGTAGCCGAGGATTGGAAGTCCAATTAAGTAAGCCACTAAGAAGTGGG  Raphanus raphanistrum subsp. maritimus
EY943890       --> CGAGTAGCCGAGGATCGGAAGTCCAATTAAGTAAGCCACTAAGAAGTGGG  Raphanus sativus cv Rat-Tail Radish #3870
FD581042       --> CGAGTAGCCGAGGATTGGAAGTCCAATTAAGTAAGCCACTAAGAAGTGGG  Raphanus sativus cv Rat-Tail Radish #3870
FD583811       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EV539733       --> CGAGTAGCCGAGGATCGGAAGTCCAATTAAGTAAGCCACTAAGAAGTGGG  Raphanus raphanistrum subsp. raphanistrum (MS)

               551    -    601
UN16304        --> CTGCTTCATGTGCGGCAAGACGTTCTTGATAATCAGGGAAGAACGTCGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV534950       <-- CCGCTTCATGTGCGGCAAGACGTTCTTGATAATCAGGGAAGAACGTCGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY948129       <-- CTGCTTCATGTGCGGCAAGACGTTCTTGATAATCAGGGAAGAACGTCGAA  Raphanus sativus cv Rat-Tail Radish #3870
FD579915       <-- CTGCTTCATGTGCGGCAAGACGTTCTTGATAATCAGGGAAGAACGTCGAA  Raphanus sativus cv Rat-Tail Radish #3870
EV529522       --> CTGCTTCATGTGCGGCAAGACGTTCTTGATAATCAGGGAAGAATGTCGAA  Raphanus raphanistrum subsp. maritimus
EV530022       --> CTGCTTCATGTGCGGCAAGACGTTCTTGATAATCAGGGAAGAATGTCGAA  Raphanus raphanistrum subsp. maritimus
EY943890       --> CTGCTTCATGTGCGGCAAGACGTTCTTGATAATCAGGGAAGAACGTCGAA  Raphanus sativus cv Rat-Tail Radish #3870
FD581042       --> CTGCTTCATGTGCGGCAAGACGTTCTTGATAATCAGGGAAGAATGTCGAA  Raphanus sativus cv Rat-Tail Radish #3870
FD583811       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EV539733       --> CCGCTTCATGTGCGGCAAGACGTTCTTGATAATCAGGGAAGAACGTCGAA  Raphanus raphanistrum subsp. raphanistrum (MS)

               601    -    651
UN16304        --> AACCCGGAAATAGCAGCTTGAAGAAGCCCCGGTGAAACGCTTCCCACGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV534950       <-- AACCCGGAAATCGCAGCTTGAAGAAGCCCCGGTGAAACGCTTCCCACGCC
EY948129       <-- AACCCGGAAATAGCAGCTTGAAGAAGCCCCGGTGAAACGCTTCCCACGCC
FD579915       <-- AACCCGGAAATAGCAGCTTGAAGAAGCCCCGGTGAAACGCTTCCCACGCC
EV529522       --> AACCCGGAAATAGCAGCTTGAAGAAGCCCCGGTGAAACGCTTCCCACGCC
EV530022       --> AACCCGGAAATAGCAGCTTGAAGAAGCCCCGGTGAAACGCTTCCCACGCC
EY943890       --> AACCCGGAAATAGCAGCTTGAAGAAGCCCCGGTGAAACGCTTCCCACGCC
FD581042       --> AACCCGGAAATAGCAGCTTGAAGAAGCCCCGGTGAAACGCTTCCCACGCC
FD583811       --> ..................................................
EV539733       --> AACCCGGAAATCGCAGCTTGAAGAAGCCCCGGTGAAACGCTTCCCACGCC

               651    -    701
UN16304        --> CAAAACTACCAAGGATATGCTCCCAACTAAGTAAGGCACAAAGAATCCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV534950       <-- CAAAACTACCAATGATATGCTCCCAACTAAGTAAGGCACAAAGAATCCCC
EY948129       <-- CAAAACTACCAAGGATATGCTCCCAACTAAGTAAGGCACAAAGAATCCCC
FD579915       <-- CAAAACTACCAAGGATTTGCTCCCAACTAAGTAAGGCACAAAGAATCCCC
EV529522       --> CAAAACTACCAAGGATATGCTCCCGACCAAGTAAGGCACAAAGAATCCCC
EV530022       --> CAAAACTACCAAGGATATGCTCCCGACTAAGTAAGGCACAAAGAATCCCC
EY943890       --> CAAAACTACCAAGGATATGCTCCCAACTAAGTAAGGCACAAAGAATCCCC
FD581042       --> CAAAACTACCAAGGATATGCTCCC..........................
FD583811       --> ..................................................
EV539733       --> CAAAACTACCAATGATATGCTCCCAACTAAGTAAGGCACAAAGAATCCCC

               701    -    751
UN16304        --> AGTCCCCGGGAAGTTGGCCGGCAATTACAGCTAAGACGCTCGTTGTTCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV534950       <-- AGTCCCCGGGAAGTTGGCCGGCAATTACAGCTAAGACGCTCGTTGTTCCG
EY948129       <-- AGTCCCCGGGAAGTTGGCCGGCAATTACAGCTAAGAAGCTCGTTGTTCCG
FD579915       <-- AGTCCCCGGGAAGTTGGCCGGCAATTACAGCTAAGAAGCTCGTTGTTCCG
EV529522       --> AGTCCCCGGGAAGTTGGTCGGCAATTACAGCTAAGACGCTCGTTGTTCCG
EV530022       --> AGTCCCCGGGAAGTTGGCCGGCAATTACAGCTAAGACGCTCGTTGTTCCG
EY943890       --> AGTCCCCGGGAAGTTGGCCGGCAATTACAGCTAAGAAGCTCGTTGTTCCG
FD581042       --> ..................................................
FD583811       --> ..................................................
EV539733       --> AGTCCCCGGGAAGTTGGCCGGCAATTACAGCTAAGACGCTCGTTGTTCCG

               751    -    801
UN16304        --> ACAACAGTTACAAGAAAAGCAGCATCGTTCCTGACACTAGGGATGGCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV534950       <-- ACAACAGTTACAAGAAAAGCAGCATCGTTCCTGACACTAGGGATGGCAAG
EY948129       <-- ACAACAGTTACAAGAAAAGCAGCATCGTTCCTGACACTAGGGATGGCAAG
FD579915       <-- ACAACAGTTACAAGAAAAGCAGCATCGTTCCTGACACTAGGGATGGCAAG
EV529522       --> ACAACAGTTACAAGAAACGCAGCATC........................
EV530022       --> ACAACAGTTACAAGAAACGCAGCATCGTTCCTGACACTAGGGATGGCAAG
EY943890       --> ACAACAGTTACAAGAAAAGCAGCATCGTTC-TGACACTAGGGATGGCAAG
FD581042       --> ..................................................
FD583811       --> ..................................................
EV539733       --> ACAACAGTTACAAGAAAAGCAGCATCGTTCCTGACACTAGGGATGGCAAG

               801    -    851
UN16304        --> ATTCTCTGCATTCTTGATTCCGAGATTAGTCAGCTCCCGAAGCGACGTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV534950       <-- ATTCTCTGCATTCTTGATTCCGAGATTCGTCAGCTCCCGAAGCGACGTCG
EY948129       <-- ATTCTCTGCATTCTTGATTCCGAGATTAGTCAGCTCCCGAAGCGACGTCG
FD579915       <-- ATTCTCTGCATTCTTGATTCCGAGATTAGTCAGCTCCCGAAGCGACGTCG
EV529522       --> ..................................................
EV530022       --> ATTCTCTGCATTCTTGATTCCGAGAT........................
EY943890       --> ATTCTCTGCATTCTTGAT-CCGAGAT-AGTCAGCTCCCGAAGCGACGTCG
FD581042       --> ..................................................
FD583811       --> ..................................................
EV539733       --> ATTCTCTGCATTCTTGATTCCGAGATTCGTCAGCTCCCGAAGCGACGTCG

               851    -    901
UN16304        --> TACGACGTGACATGTAAGGCTGAGAACTCCATTTCTTAGCCCAACCTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV534950       <-- TACGACGTGACATGTAAGGCTGAGAACTCCATTTCTTAGCCCAACCTTCT
EY948129       <-- TACGACGTGACATGTAAGGCTGAGAACTCCATTTCTTAGCCCAACCTTCT
FD579915       <-- TACGACGTGACATGTAAGGCTGAGAACTCCATTTCTTAGCCCAACCTTCT
EV529522       --> ..................................................
EV530022       --> ..................................................
EY943890       --> TACGACGTGACATG....................................
FD581042       --> ..................................................
FD583811       --> ..................................................
EV539733       --> TACGACGTGACATG....................................

               901    -    951
UN16304        --> TCACTCAACTGATCCAGAGCTTCCTTAACACCACTACTATCTTTCTTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV534950       <-- TCACTCAATCGATCCAAAGCTTCCTTAACACCACTACTATCTTTCTTGTT
EY948129       <-- TCACTCAACTGATCCAGAGCTTCCTTAACACCACTACTATCTTTCTTGTT
FD579915       <-- TCACTCAACTGATCCAGAGCTTCCTTAACACCACTACTATCTTTCTTGTT
EV529522       --> ..................................................
EV530022       --> ..................................................
EY943890       --> ..................................................
FD581042       --> ..................................................
FD583811       --> ..................................................
EV539733       --> ..................................................

               951    -   1001
UN16304        --> AATGGCAGACTCGAGGGTACTCAAATCAAACCCAGGGGAAGCCGCCGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV534950       <-- GATGGCGGACTCGAGGGTACTCAAATCAAACCCAGGGGAAGCCGCCGCCG
EY948129       <-- AATGGCAGACTCGAGGGTACTCAAATCAAACCCAGGGGAAGCCGCCGAAG
FD579915       <-- AATGGCAGACTCGAGGGTACTCAAATCAAACCCAGGGGAAGCCGCCGAAG
EV529522       --> ..................................................
EV530022       --> ..................................................
EY943890       --> ..................................................
FD581042       --> ..................................................
FD583811       --> ..................................................
EV539733       --> ..................................................

               1001   -   1051
UN16304        --> AAGAAGAAGAAACCGCTGCCTTAGTCGGAAGGTTTCGTGGACGACGTAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV534950       <-- AAGAAGAAGAAACCGCTGTCTGAGTCGGAGGGTTTCGTGGACGACGTAAC
EY948129       <-- AAGAAGAAGAAACCGCTGCCTTAGTCGGAAGGTTTCGTGGACGACGTAAC
FD579915       <-- AAGAAGAAGAAACCGCTGCCTTAGTCGGAAGGTTTCGTGGACGACGTAAC
EV529522       --> ..................................................
EV530022       --> ..................................................
EY943890       --> ..................................................
FD581042       --> ..................................................
FD583811       --> ..................................................
EV539733       --> ..................................................

               1051   -   1101
UN16304        --> TGGAAGCTATAATGGCGGCGAAACGAAGCAATACCCGAGGAAGAAACAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV534950       <-- TGGAAGCTGTAATGACGGCGAGACGAAGCAATACCCGAGGAAGAAACAGC
EY948129       <-- TGGAAGCTATAATGGCGGCGAAACGAAGCAATACCCGAGGAAGAAACAGC
FD579915       <-- TGGAAGCTATAATGGCGGCGAAACGAAGCAATACCCGAGGAAGAAACAGC
EV529522       --> ..................................................
EV530022       --> ..................................................
EY943890       --> ..................................................
FD581042       --> ..................................................
FD583811       --> ..................................................
EV539733       --> ..................................................

               1101   -   1151
UN16304        --> TAATGCAACCATTGTTTTCTTTCTCGGAGTTTCACGAACCAAGAATCAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV534950       <-- TAATGCAACCATTGTTTTCTTTCTCGGAGTTTAACAAACCAAGAATCAGA
EY948129       <-- TAATGCAACCATTGTTTTCTTTCTCGGAGTTTCACcc.............
FD579915       <-- TAATGCAACCATTGTTTTCTTTCTCGGAGTTTCACGAACCAAGAATCAGA
EV529522       --> ..................................................
EV530022       --> ..................................................
EY943890       --> ..................................................
FD581042       --> ..................................................
FD583811       --> ..................................................
EV539733       --> ..................................................

               1151   -   1201
UN16304        --> CAATGCTTCCC
                   ~~~~~~~~~~~
EV534950       <-- CAATGCTTC..
EY948129       <-- ...........
FD579915       <-- CAATGCTTCCC
EV529522       --> ...........
EV530022       --> ...........
EY943890       --> ...........
FD581042       --> ...........
FD583811       --> ...........
EV539733       --> ...........