1      -     51
UN16317        --> CTAGAAGCGTGCTCTGTCGGAAACGAGCACCTTATATTACAGACAAGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534863       <-- ..................................................
FD541890       <-- ..................................................
EV568405       <-- ..................................................
EX765167       <-- ..................................................
EX904129       <-- ..................................................
FD579026       <-- ..................................................
EY929923       <-- ..................................................
FD551294       <-- ..................................................
FY440129       --> CTAGAAGCGTGCTCTGTCGGAAACGAGCACCTTATATTACAGACAAGAAG
FY444106       --> CTAGAAGCGTGCTCTGTCGGAAACGAGCACCTTATATTACAGACAAGAAG
FD969544       --> ..................................................
EX909218       --> ..................................................
EX768961       --> ..................................................
FD530677       --> ..................................................
FD547191       --> ..................................................
FD583081       --> ..................................................
EX908076       --> ..................................................
FD974981       --> ..................................................

               51     -    101
UN16317        --> GTAATGATTCAGACAAAGAAGGTTCATTCACTTGTCAAAAATTTCCCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534863       <-- ........caggcaAAAGAAGGTTCATTCACTTGTCAAAAGTTTCCCAAA  Raphanus raphanistrum subsp. maritimus
FD541890       <-- ............................CACTTGTAAAAAATTTCCCAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568405       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX765167       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX904129       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD579026       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY929923       <-- ..................................................  Raphanus sativus var. oleiformis
FD551294       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY440129       --> GTAATGATTCAGACAAAGAAGGTTCATTCACTTGTCAAAAATTTCCCAAA  Raphanus sativus cv GSK3-1
FY444106       --> GTAATGATTCAGACAAAGAAGGTTCATTCACTTGTCAAAAATTTCCCAAA  Raphanus sativus cv GSK3-1
FD969544       --> .....GATTCAGACAAAAGAAGTTCATTCACTTGTAAAAAATTTCCCAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX909218       --> .....ggTTCAGACAAAGAAGGTTCATTCACTTGTCAAAAATTTCCCAAA  Raphanus sativus cv Rat-Tail Radish #3870
EX768961       --> ........caaacaAAAGAAG-TTCATTCACTTGTAAAAAATTTCCCAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD530677       --> ........caggcaAAAGAAGGTTCATTCACTTGTCAAAAGTTTCCCAAA  Raphanus raphanistrum subsp. maritimus
FD547191       --> .........aggcaAAAGAAGGTTCATTCACTTGTCAAAAGTTTCCCAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD583081       --> ....................GGTTCATTCACTTGTCAAAAGTTTCCCAAA  Raphanus sativus cv Rat-Tail Radish #3870
EX908076       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD974981       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               101    -    151
UN16317        --> AATAAAAACATGTATAAAAAAGAGTTCTATTCTT-CCTTATCCTCAAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534863       <-- AATAAAAA-ATGTATAAAAAAGAGTTCTATTCTT-CCTTATCCTTAAATT  Raphanus raphanistrum subsp. maritimus
FD541890       <-- A-TAAAAACATGTATAAAAAAGAGTTCTATTCTT-CCTTATCCTCAAATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568405       <-- .............................................AAATT  Raphanus raphanistrum subsp. landra
EX765167       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX904129       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD579026       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY929923       <-- ..................................................  Raphanus sativus var. oleiformis
FD551294       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY440129       --> AATAAAAACATGTATAAAAAAGAGTTCTATTCTT-CCTTATCCTCAAATT  Raphanus sativus cv GSK3-1
FY444106       --> AATAAAAACATGTATAAAAAAGAGTTCTATTCTT-CCTTATCCTCAAATT  Raphanus sativus cv GSK3-1
FD969544       --> AATAAAAACATGTATAAAAAAGAGTTCTATTCTT-CCTTATCCTCAAATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX909218       --> AATAAAAACATGTATAAAAAAGAGTTCTATTCTTTCCTTATCCTCAAATT  Raphanus sativus cv Rat-Tail Radish #3870
EX768961       --> A-TAAAAACATGTATAAAAAAGAGTTATATTCTT-CCTTATCGTCAAATT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD530677       --> AATAAAAA-ATGTATAAAAAAGAGTTCTATTCTT-CCTTATCCTTAAATT  Raphanus raphanistrum subsp. maritimus
FD547191       --> AATAAAA-CATGTATAAAAAAGAGTTCTATTCTT-CCTTATCCTTAAATT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD583081       --> AATAAAA-CATGTATAAAAAAGAGTTCTATTCTT-CCTTATCCTTAAATT  Raphanus sativus cv Rat-Tail Radish #3870
EX908076       --> ..........cGTATAAAAAAGAGTTCTATTCTT-CCTTATCCTCAAATT  Raphanus sativus cv Rat-Tail Radish #3870
FD974981       --> ...........GTATAAAAAAGAGTTATATTCTT-CCTTATCGTCAAATT  Raphanus raphanistrum subsp. raphanistrum (NY)

               151    -    201
UN16317        --> TTCTAACGAGTGGTT-GGTTTAAAA-CAAATTAAACTATAAAAAA-GGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534863       <-- TTCTAAAGAGTGGTT-GGTTTAAAA-CAAATTAAACTATAAAAAA-GGCA  Raphanus raphanistrum subsp. maritimus
FD541890       <-- TTCTAACGAGTGGTT-GGTTTAAAAACAAATTAA-CTATAAAAAAAGGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568405       <-- TTCTAAAGAGTGGTT-GGTTTAAAA-CAAATTAAACTATAAAAAA-GGCA  Raphanus raphanistrum subsp. landra
EX765167       <-- TTCTAACGAGTGGTT-GGTTTAAAAACAAATTAA-CTATAAAAAA-GGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX904129       <-- ....................................TATAAAAAA-GGCA  Raphanus sativus cv Rat-Tail Radish #3870
FD579026       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY929923       <-- ..................................................  Raphanus sativus var. oleiformis
FD551294       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY440129       --> TTCTAACGAGTGGTTTGGTTTAAAA-CAAATTAAACTATAAAAAA-GGCA  Raphanus sativus cv GSK3-1
FY444106       --> TTCTAACGAGTGGTTTGGTTTAAAA-CAAATTAAACTATAAAAAA-GGCA  Raphanus sativus cv GSK3-1
FD969544       --> TTCTAACGAGTGGTT-GGTTTAAAAACAAATTAA-CTATAAAAAA-GGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX909218       --> TTCTAACGAGTGGTTTGGTTTAAAA-CAAATTAAACTATAAAATA-GGCA  Raphanus sativus cv Rat-Tail Radish #3870
EX768961       --> TTCTAACGAGTGGTT-GGTTTAAAAACAAATTAA-CTATAAAAAAAGGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD530677       --> TTCTAAAGAGTGGTT-GGTTTAAAA-CAAATTAAACTATAAAAAA-GGCA  Raphanus raphanistrum subsp. maritimus
FD547191       --> TTCTAAAGAGTGGTT-GGTTTAAAA-CAAATTAAACTATAAAAAA-GGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD583081       --> TTCTAAAGAGTGGTT-GGTTCAAAA-CAAATTAAACTATAAAAAA-CGCA  Raphanus sativus cv Rat-Tail Radish #3870
EX908076       --> TTCTAACGAGTGGTTTGGTTTAAAA-CAAATTAAACTATAAAAAA-GGCA  Raphanus sativus cv Rat-Tail Radish #3870
FD974981       --> TTCTAACGAGTGGTT-GGTTTAAAAACAAATTAA-CTATAAAAAAAAGCA  Raphanus raphanistrum subsp. raphanistrum (NY)

               201    -    251
UN16317        --> ACTTAGCTTAGAGCTCATCATGAGACTCATCTTCCTCCTCGGTTGCTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534863       <-- ACTTAGCTTAGAGCTCATCATGAGACTCATCTTCCTCCTCGGTTGCTGAT  Raphanus raphanistrum subsp. maritimus
FD541890       <-- ACTTAGCTTAGAGCTCATCATGAGACTCATCTTCCTCCTCGGTTGCTGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568405       <-- ACTTAGCTTAGAGCTCATCATGAGGCTCATCTTCCTCCTCCGTTGCTGAT  Raphanus raphanistrum subsp. landra
EX765167       <-- ACTTAGCTTAGAGCTCATCATGAGACTCATCTTCCTCCTCGGTTGCTGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX904129       <-- ACTTAGCTTAGAGCTCATCATGGGACTCATCT-CCTCCTCGGTTGCTGAT  Raphanus sativus cv Rat-Tail Radish #3870
FD579026       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY929923       <-- ..................................................  Raphanus sativus var. oleiformis
FD551294       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY440129       --> ACTTAGCTTAGAGCTCATCATGGGACTCATCTTCCTCCTCGGTTGCTGAT  Raphanus sativus cv GSK3-1
FY444106       --> ACTTAGCTTAGAGCTCATCATGGGACTCATCTTCCTCCTCGGTTGCTGAT  Raphanus sativus cv GSK3-1
FD969544       --> ACTTAGCTTAGAGCTCATCATGAGACTCATCTTCCTCCTCGGTTGCTGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX909218       --> ACTTAGCTTAAAGCTCATCATGGGACTCATCTTCCTCCTCGGTTGCTGAT  Raphanus sativus cv Rat-Tail Radish #3870
EX768961       --> ACTTAGCTTAGAGCTCATCATGAGACTCATCTTCCTCCTCGGTTGCTGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD530677       --> ACTTAGCTTAAAGCTCATCATGAGACTCATCTTCCTCCTCGGTTGCTGAT  Raphanus raphanistrum subsp. maritimus
FD547191       --> ACTTAGTTTAGAGCTCATCATGAGACTCATCTTCCTCCTCGGTTGCTGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD583081       --> ACTTAGCTTAAAGCTCATCATGAGACTCATCTTCCTCCTCCGTTGCTGAT  Raphanus sativus cv Rat-Tail Radish #3870
EX908076       --> ACTTAGCTTAGAGCTCATCATGGGACTCATCTTCCTCCTCGGTTGCTGAT  Raphanus sativus cv Rat-Tail Radish #3870
FD974981       --> ACTTAGCTTAGAGCTCATCATGAGACTCATCTTCCTCCTCGGTTGCTGAT  Raphanus raphanistrum subsp. raphanistrum (NY)

               251    -    301
UN16317        --> TCTCCACCCGCACCACCTGGTGCACCACCTGACCTCTGGTAAACAGCAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534863       <-- TCTCCACCCGCACCACCTGGTGCACCACCTGACCTCTGGTAAACAGCAGT  Raphanus raphanistrum subsp. maritimus
FD541890       <-- TCTCCACCCGCATCACCTGGTGCACCACCTGACCTCTGGTAAACAGCAGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568405       <-- TCTCCACCCGCACCACCTGGTGCACCACCTGACCTCTGGTAAACAGCAGT  Raphanus raphanistrum subsp. landra
EX765167       <-- TCTCCACCCGCACCACCTGGTGCACCACCTGACCTCTGGTAAACAGCAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX904129       <-- TCTCCACCCGCACCACCTGGTGCACCAC-TGA-CTCTGGTAAACAGCCGT  Raphanus sativus cv Rat-Tail Radish #3870
FD579026       <-- .....................................GGTAAACAGCCGT  Raphanus sativus cv Rat-Tail Radish #3870
EY929923       <-- ..................................................  Raphanus sativus var. oleiformis
FD551294       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY440129       --> TCTCCACCCGCACCACCTGGTGCACCACCTGACCTCTGGTAAACAGCCGT  Raphanus sativus cv GSK3-1
FY444106       --> TCTCCACCCGCACCACCTGGTGCACCACCTGACCTCTGGTAAACAGCCGT  Raphanus sativus cv GSK3-1
FD969544       --> TCTCCACCCGCACCACCTGGTGCACCACCTGACCTCTGGTAAACAGCAGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX909218       --> TCTCCACCCGCACCACCTGGTGCACCACCTGACCTCTGGTAAACAGCAGT  Raphanus sativus cv Rat-Tail Radish #3870
EX768961       --> TCTCCACCCGCACCACCTGGTGCACCACCTGACCTCTGGTAAACAGCAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD530677       --> TCTCCACCCGCACCACCTGGTGCACCACCTGACCTCTGGTAAACAGCAGT  Raphanus raphanistrum subsp. maritimus
FD547191       --> TCTCCACCCGCACC---TGGTGCACCACCTGACCTCTGGTAAACAGCAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD583081       --> TCTCCACCCGCACCACCTGGTGCACCACCTGACCTCTGGTAAACAGCCGT  Raphanus sativus cv Rat-Tail Radish #3870
EX908076       --> TCTCCACCCGCACCACCTGGTGCACCACCTGACCTCTGGTAAACAGCCGT  Raphanus sativus cv Rat-Tail Radish #3870
FD974981       --> TCTCCACCCGCACCACCTGGTGCACCACCTGACCTCTGGTAAACGGCAGT  Raphanus raphanistrum subsp. raphanistrum (NY)

               301    -    351
UN16317        --> GATGATTGGGTTACACACTGCCTCTACTTCCTTCAACTTCTCGTCATACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534863       <-- GATGATTGGGTTACACACTGCCTCTACTTCCTTCAACTTCTCGTCATACT
FD541890       <-- GATGATTGGGTTACACACTGCCTCTACCTCCTTCAACTTCTCGTCATACT
EV568405       <-- GATGATTGGGTTACACACTGCCTCTACTTCCTTCAACTTCTCGTCATACT
EX765167       <-- GATGATTGGGTTACACACTGCCTCTACTTCCTTCAACTTCTCGTCATACT
EX904129       <-- GATGATTGGGTTACACACTGCCTCTACTTCCTTCAACTTCTCGTCATACT
FD579026       <-- GATGATTGGGTTACACACTGCCTCTACTTCCTTCAACTTCTCGTCATACT
EY929923       <-- ..................................................
FD551294       <-- ..................................................
FY440129       --> GATGATTGGGTTACACACTGCCTCTACTTCCTTCAACTTCTCGTCATACT
FY444106       --> GATGATTGGGTTACACACTGCCTCTACTTCCTTCAACTTCTCGTCATACT
FD969544       --> GATGATTGGGTTACACACTGCCTCTACCTCCTTCAACTTCTCGTCATACT
EX909218       --> GATGATTGGGTTACGCACTGCCTCTACTTCCTTCAACTTCTCGTCATACT
EX768961       --> GATGATTGGGTTACACACTGCCTCTACTTCCTTCAACTTCTCGTCATACT
FD530677       --> GATGATTGGGTTACACACTGCCTCTACTTCCTTCAACTTCTCGTCATACT
FD547191       --> GATGATTGGGTTACACACTGCCTCTACTTCCTTCAACTTCTCGTCATACT
FD583081       --> GATGATTGGGTTACACACTGCCTCTACTTCCTTCAACTTCTCGTCATACT
EX908076       --> GATGATTGGGTTACACACTGCCTCTACTTCCTTCAACTTCTCGTCATACT
FD974981       --> GATGATTGGGTTACACACTGCCTCTACTTCCTTCAACTTCTCGTCATACT

               351    -    401
UN16317        --> CTTCCTTCTCCGAGTTTTGGTTCTCGTCAAGCCACTCCAACGCTTCTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534863       <-- CTTCCTTCTCCGAGTTTTGGTTCTCGTCAAGCCACTCCAACGCTTCTTTC
FD541890       <-- CTTCCTTCTCTGAGTTTTGGTTCTCGTCAAGCCACTCCAACGCTTCTTTC
EV568405       <-- CTTCCTTCTCCGAGTTTTGGTTCTCGTCAAGCCACTCCAACGCTTCTTTC
EX765167       <-- CTTCCTTCTCCGAGTTTTGGTTCTCGTCAAGCCACTCCAACGCTTCTTTC
EX904129       <-- CTTCCTTCTCCGAGTTTTGGTTCTCGTCAAGCCACTCCAACGCTTCTTTC
FD579026       <-- CTTCCTTCTCCGAGTTTTGGTTCTCGTCAAGCCACTCCAACGCTTCTTTC
EY929923       <-- ..................................................
FD551294       <-- ..................................................
FY440129       --> CTTCCTTCTCCGAGTTTTGGTTCTCGTCAAGCCACTCCAACGCTTCTTTC
FY444106       --> CTTCCTTCTCCGAGTTTTGGTTCTCGTCAAGCCACTCCAACGCTTCTTTC
FD969544       --> CTTCCTTCTCTGAGTTTTGGTTCTCGTCAAGCCACTCCAACGCTTCTTTC
EX909218       --> CTTCCTTCTCCGAGTTTTGGTTCTCGTCAAGCCACTCCAACGCTTCTTTC
EX768961       --> CTTCCTTCTCCGAGTTTTGGTTCTCGTCAAGCCACTCCAACGCTTCTTTC
FD530677       --> CTTCCTTCTCCGAGTTTTGGTTCTCGTCAAGCCACTCCAACGCTTCTTTC
FD547191       --> CTTCCTTCTCCGAGTTTTGGTTCTCGTCAAGCCACTCCAACGCTTCTTTC
FD583081       --> CTTCCTTCTCCGAGTTTTGGTTCTCGTCAAGCCACTCCAACGCTTCTTTC
EX908076       --> CTTCCTTCTCCGAGTTTTGGTTCTCGTCAAGCCACTCCAACGCTTCTTTC
FD974981       --> CTTCCTTCTCCGAGTTTTGGTTCTCGTCAAGCCACTCCAACGCTTCTTTC

               401    -    451
UN16317        --> GTCGCTGCCTCAATCTTCTCCTTCTCGTCACCCTCAAGTTTGTCTGCGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534863       <-- GTCGCTGCTTCAATCTTCTCCTTCTCGTCACCCTCAAGTTTGTCTGCAAG  Raphanus raphanistrum subsp. maritimus
FD541890       <-- GTCGCTGCCTCAATCTTCTCCTTCTCGTCACCCTCAAGTTTGTCAGCGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568405       <-- GTCGCTGCTTCAATCTTCTCCTTCTCGTCACCCTCAAGTTTGTCTGCAAG  Raphanus raphanistrum subsp. landra
EX765167       <-- GTCGCTGCCTCAATCTTCTCCTTCTCGTCACCCTCAAGTTTGTCAGCGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX904129       <-- GCCGCTGCCTCAATCTTCTCCTTCTCGTCACCCTCAAGTTTGTCCGCGAG  Raphanus sativus cv Rat-Tail Radish #3870
FD579026       <-- GTCGCTGCTTCGATCTTCTCCTTCTCGTCACCCTCAAGTTTGTCTGCGAG  Raphanus sativus cv Rat-Tail Radish #3870
EY929923       <-- ..................................................  Raphanus sativus var. oleiformis
FD551294       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY440129       --> GTCGCTGCCTCAATCTTCTCCTTCTCGTCACCCTCAAGTTTGTCCGCGAG  Raphanus sativus cv GSK3-1
FY444106       --> GTCGCTGCCTCAATCTTCTCCTTCTCGTCACCCTCAAGTTTGTCCGCGAG  Raphanus sativus cv GSK3-1
FD969544       --> GTCGCTGCCTCAATCTTCTCCTTCTCGTCACCCTCAAGTTTGTCAGCGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX909218       --> GTCGCTGCTTCGATCTTCTCCTTCTCGTCACCCTCAAGTTTGTCTGCGAG  Raphanus sativus cv Rat-Tail Radish #3870
EX768961       --> GTCGCTGCCTCAATCTTCTCCTTCTCGTCACCCTCAAGTTTGTCAGCGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD530677       --> GTCGCTGCTTCAATCTTCTCCTTCTCGTCACCCTCAAGTTTGTCTGCAAG  Raphanus raphanistrum subsp. maritimus
FD547191       --> GTCGCTGCTTCAATCTTCTCCTTCTCGTCACCCTCAAGTTTGTCTGCAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD583081       --> GTCGCTGCTTCGATCTTCTCCTTCTCGTCACCCTCAAGTTTGTCTGCGAG  Raphanus sativus cv Rat-Tail Radish #3870
EX908076       --> GCCGCTGCCTCAATCTTCTCCTTCTCGTCACCCTCAAGTTTGTCCGCGAG  Raphanus sativus cv Rat-Tail Radish #3870
FD974981       --> GTCGCTGCCTCAATCTTCTCCTTCTCGTCACCCTCAAGTTTGTCAGCGAG  Raphanus raphanistrum subsp. raphanistrum (NY)

               451    -    501
UN16317        --> CTTGTCCTTGTCGTTTATTTGGTTCTTCATGTTGTACACGTATGTCTCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534863       <-- CTTGTCCTTGTCGTTTACTTGGTTCTTCATGTTGTACACGTATGTCTCCA  Raphanus raphanistrum subsp. maritimus
FD541890       <-- CTTGTCCTTGTCGTTTATTTGGTTCTTCATGTTGTACACGTAAGTCTCGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568405       <-- CTTGTCCTTGTCGTTTACTTGGTTCTTCATGTTGTACACGTATGTCTCCA  Raphanus raphanistrum subsp. landra
EX765167       <-- CTTGTCCTTGTCGTTTATTTGGTTCTTCATGTTGTACACGTATGTCTCAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX904129       <-- CTTGTCCTTGTCGTTTATTTGGTCCTTCATGTTGTACACGTATGTCTCAA  Raphanus sativus cv Rat-Tail Radish #3870
FD579026       <-- CTTGTCCTTGTCGTTTATTTGGTTCTTCATGTTGTACACGTATGTCTCAA  Raphanus sativus cv Rat-Tail Radish #3870
EY929923       <-- ..................................................  Raphanus sativus var. oleiformis
FD551294       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY440129       --> CTTGTCCTTGTCGTTTATTTGGTTCTTCATGTTGTACACGTATGTCTCAA  Raphanus sativus cv GSK3-1
FY444106       --> CTTGTCCTTGTCGTTTATTTGGTTCTTCATGTTGTACACGTATGTCTCAA  Raphanus sativus cv GSK3-1
FD969544       --> CTTGTCCTTGTCGTTTATTTGGTTCTTCATGTTGTACACGTGTGTCTCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX909218       --> CTTGTCCTTGTCGTTTATTTGGTTCTTCATGTTGTACACGTATGTCTCAA  Raphanus sativus cv Rat-Tail Radish #3870
EX768961       --> CTTGTCCTTGTCGTTTATTTGGTTCTTCATGTTGTACACGTATGTCTCAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD530677       --> CTTGTCCTTGTCGTTTACTTGGTTCTTCATGTTGTACACGTATGTCTCCA  Raphanus raphanistrum subsp. maritimus
FD547191       --> CTTGTCCTTGTCGTTTACTTGGTTCTTCATGTTGTACACGTATGTCTCCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD583081       --> CTTGTCCTTGTCGTTTATTTGGTTCTTCATGTTGTACACGTATGTCTCAA  Raphanus sativus cv Rat-Tail Radish #3870
EX908076       --> CTTGTCCTTGTCGTTTATTTGGTCCTTCATGTTGTACACGTATGTCTCAA  Raphanus sativus cv Rat-Tail Radish #3870
FD974981       --> CTTGTCCTTGTCGTTTATTTGGTTCTTCATGTTGTACACGTATGTCTCAA  Raphanus raphanistrum subsp. raphanistrum (NY)

               501    -    551
UN16317        --> GGCTGTTCCTCGCGTCGATTCTCTCCTTCACCTTCTTGTCTTCCTCCGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534863       <-- GGCTGTTCCTCGCGTCGATTCTCTCCTTCACCTTCTTGTCTTCCTCAGCA  Raphanus raphanistrum subsp. maritimus
FD541890       <-- GGCTGTTCCTTGCGTCGATTCTCTCCTTCACCTTCTTGTCTTCCTCTGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568405       <-- GGCTGTTCCTCGCGTCGATTCTCTCCTTCACCTTCTTGTCTTCCTCAGCA  Raphanus raphanistrum subsp. landra
EX765167       <-- GGCTGTTCCTCGCGTCGATTCTCTCCTTCACCTTCTTGTCTTCCTCTGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX904129       <-- GGCTGTTCCTCGCGTCGATTCTCTCCTTCACCTTCTTGTCTTCCTCCGCA  Raphanus sativus cv Rat-Tail Radish #3870
FD579026       <-- GGCTGTTCCTCGCGTCGATTCTCTCCTTCACCTTCTTGTCTTCCTCCGCA  Raphanus sativus cv Rat-Tail Radish #3870
EY929923       <-- ..................................................  Raphanus sativus var. oleiformis
FD551294       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY440129       --> GGCTGTTCCTCGCGTCGATTCTCTCCTTCACCTTCTTGTCTTCCTCCGCA  Raphanus sativus cv GSK3-1
FY444106       --> GGCTGTTCCTCGCGTCGATTCTCTCCTTCACCTTCTTGTCTTCCTCCGCA  Raphanus sativus cv GSK3-1
FD969544       --> GGCTGTTCCTTGCGTCGATTCTCTCCTTCACCTTCTTGTCTTCCTCAGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX909218       --> GGCTGCTCCTCGCGTCGATTCTCTCCTTCACCTTCTTGTCTTCCTCCGCA  Raphanus sativus cv Rat-Tail Radish #3870
EX768961       --> GGCTGTTCCTCGCGTCGATTCTCTCCTTCACCTTCTTGTCTTCCTCTGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD530677       --> GGCTGTTCCTCGCGTCGATTCTCTCCTTCACCTTCTTGTCTTCCTCAGCA  Raphanus raphanistrum subsp. maritimus
FD547191       --> GGCTGTTCCTCGCGTCGATTCTCTCCTTCACCTTCTTGTCTTCCTCAGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD583081       --> GGCTGTTCCTCGCGTCGATTCTCTCCTTCACCTTCTTGTCTTCCTCCGCA  Raphanus sativus cv Rat-Tail Radish #3870
EX908076       --> GGCTGTTCCTCGCGTCGATTCTCTCCTTCACCTTCTTGTCTTCCTCCGCA  Raphanus sativus cv Rat-Tail Radish #3870
FD974981       --> GGCTGTTCCTCGCGTCGATTCTCTCCTTCACCTTCTTGTCTTCCTCTGCA  Raphanus raphanistrum subsp. raphanistrum (NY)

               551    -    601
UN16317        --> AACTCCTCTGCCTCCTTCACCATCCGGTCTATCTCTTCCTGGCTCAGACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534863       <-- AACTCCTCTGCC......................................  Raphanus raphanistrum subsp. maritimus
FD541890       <-- AACTCCTCTGCCTCCTTCACCATCCGGTCGATTTCTTCCTGGCTCAGACG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568405       <-- AACTCCTCTGCCTCCTTCACCATCCGGTCTATCTCTTCCTGGCTCAGACG  Raphanus raphanistrum subsp. landra
EX765167       <-- AACTCCTCTGCCTCCTTCACCATCCGGTCGATTTCTTCCTGGCTCAGACG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX904129       <-- AACTCCTCTGCCTCCTTCACCATCCGATCAATCTCTTCCTGGCTCAGACG  Raphanus sativus cv Rat-Tail Radish #3870
FD579026       <-- AACTCCTCTGCCTCCTCCACCATCCGGTCTATCTCTTCCTGGCTCAGACG  Raphanus sativus cv Rat-Tail Radish #3870
EY929923       <-- ................TCACCATCCGGTCTATCTCTTCCTGGCTCAGACG  Raphanus sativus var. oleiformis
FD551294       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY440129       --> AACTCCTCTGCCTCCTTCACCATCCGATCAATCTCTTCCTGGCTCAGACG  Raphanus sativus cv GSK3-1
FY444106       --> AACTCCTCTGCCTCCTTCACCATCCGATCAATCTCTTCCTGGCTCAGACG  Raphanus sativus cv GSK3-1
FD969544       --> AACTCCTCTGCCTCCTTCACCATCCGGTCGATCTCTTCCTGGCTCAAACG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX909218       --> AACTCCTCTGCCTCCTTCACCATCCGGTCTATCTCTTCCTGGCTCAAACG  Raphanus sativus cv Rat-Tail Radish #3870
EX768961       --> AACTCCTCTGCCTCCTTCACCATCCGGTCGATTTCTTCCTGGCTCAGACG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD530677       --> AACTCCTCTGCC......................................  Raphanus raphanistrum subsp. maritimus
FD547191       --> AACTCCTCTGCCTCCTTCACCATCCGGTCTATCTCTTCCTGGCTCAGACG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD583081       --> AACTCCTCTGCCTCCTCCACCATCCGGTCTATCTCTTCCTGGCTCAAACG  Raphanus sativus cv Rat-Tail Radish #3870
EX908076       --> AACTCCTCTGCCTCCTTCACCATCCGATCAATCTCTTCCTGGCTCAGACG  Raphanus sativus cv Rat-Tail Radish #3870
FD974981       --> AACTCCTCTGCCTCCTTCACCATCCGGTCGATTTCTTCCTGGCTCAGACG  Raphanus raphanistrum subsp. raphanistrum (NY)

               601    -    651
UN16317        --> TCCCTT-CTCGTTCGTGATTGTGATCTTCTCTGATTTACCACTCGCCTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534863       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD541890       <-- TCCCTT-CTCGTTCGTGATTGTGATCTTCTCTGATTTACCACTCGCCTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568405       <-- TCCCTT-CTCGTTCGTGATTGTGATCTTCTCCGATTTACCACTCGCCTTG  Raphanus raphanistrum subsp. landra
EX765167       <-- TCCCTT-CTCGTTTGTGATTGTGATCTTCTCTGATTTACCACTCGCCTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX904129       <-- TCCCTT-CTCGTTCGTGATTGTGATCTTCTCTGATTTACCACTCGCCTTG  Raphanus sativus cv Rat-Tail Radish #3870
FD579026       <-- TCCCTT-CTCGTTCGTGATTGTGATCTTCTCCGATTTACCACTCGCCTTG  Raphanus sativus cv Rat-Tail Radish #3870
EY929923       <-- TCCCTTTCTCGTTCGTGATTGTGATCTTCTCCGATTTACCACTCGCTTTG  Raphanus sativus var. oleiformis
FD551294       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY440129       --> TCCCTT-CTCGTTCGTGATTGTGATCTTCTCTGATTTACCACTCGCCTTG  Raphanus sativus cv GSK3-1
FY444106       --> TCCCTT-CTCGTTCGTGATTGTGATCTTCTCTGATTTACCACTCGCCTTG  Raphanus sativus cv GSK3-1
FD969544       --> TCCCTT-CTCGTTCGTGATTGTGATCTTCTCTGATTTACCACTCGCCTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX909218       --> TCCCTT-CTCGTTCGTGATTGTGATCTTCTCCGATTTACCACTCGCCTTG  Raphanus sativus cv Rat-Tail Radish #3870
EX768961       --> TCCCTT-CTCGTTTGTGATTGTGATCTTCTCTGATTTACCACTCGCCTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD530677       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD547191       --> TCCCTT-CTCGTTTGTGATTGTGATCTTCTCCGATTTACCACTCGCCTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD583081       --> TCCCTT-CTCGTTCGTGATTGTGATCTTCTCCGATTTACCACTCGCCTTG  Raphanus sativus cv Rat-Tail Radish #3870
EX908076       --> TCCCTT-CTCGTTCGTGATTGTGATCTTCTCTGATTTACCACTCGCCTTG  Raphanus sativus cv Rat-Tail Radish #3870
FD974981       --> TCCCTT-CTCGTTTGTGATTGTGATCTTCTCTGATTTACCACTCGCCTTG  Raphanus raphanistrum subsp. raphanistrum (NY)

               651    -    701
UN16317        --> TCCTCCGCTTTCACGTTCAGGATACCGTTGGCGTCTACTTCAAACGTCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534863       <-- ..................................................
FD541890       <-- TCCTCC............................................
EV568405       <-- TCCTCCGCTTTCACGTTCAGGATACCGTTGGCGTCTACTTCAAACGTCAC
EX765167       <-- TCCTCCGCTTTCACGTTCAGGATACCGTTGGCGTCTACTTCAAACGTCAC
EX904129       <-- TCCTCCGCTTTCACGTTCAGGATACCGTTGGCGTCTACTTCAAACGTCAC
FD579026       <-- TCCTCCGCTTTCACGTTCAGGATACCGTTGGCGTCCACTTCAAACGTCAC
EY929923       <-- TCCTCCGCTTTCACGTTCAGGATACCGTTGGCGTCCACTTCAAACGTCAC
FD551294       <-- ..................................................
FY440129       --> TCCTCCGCTTTCACGTTCAGGATACCGTTGGCGTCTACTTCAAACGTCAC
FY444106       --> TCCTCCGCTTTCACGTTCAGGATACCGTTGGCGTCTACTTCAAACGTCAC
FD969544       --> TCCTCCGCTTTCACGTTCAGGATACCGTTGGCGTCTACTTCAAACGTCAC
EX909218       --> TCCTCTGCTTTCACGTTCAGGATACCGTTGGCGTCTACTTCAAACGTCAC
EX768961       --> TCCTCCGCTTTCACGTTCAGGATACCGTTGGCGTCTACTTCAAACGTCAC
FD530677       --> ..................................................
FD547191       --> TCCTCCGCTTTCACGTTCAGGATACCGTTGGCGTCTACTTCAAACGTCAC
FD583081       --> TCCTCCGCTTTCACGTTCAGGATACCGTTGGCGTCCACTTCAAACGTCAC
EX908076       --> TCCTCCGCTTTCACGTTCAGGATACCGTTGGCGTCTACTTCAAACGTCAC
FD974981       --> TCCTCCGCTTTCACGTTCAGGATACCGTTGGCGTCTACTTCAAACGTCAC

               701    -    751
UN16317        --> CTCGATTTGAGGTGTTCCTCTTGGAGCCGGTGGGATTCCGGTGAGGTCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534863       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD541890       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568405       <-- CTCGATTTGAGGTGTTCCTCTTGGAGCCGGTGGGATTCCGGTGAGGTCGA  Raphanus raphanistrum subsp. landra
EX765167       <-- CTCGATTTGAGGTGTTCCTCTTGGAGCCGGTGGGATTCCGGTGAGGTCGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX904129       <-- CTCGATTTGAGGTGTTCCTCTTGGAGCCGGGGGGATTCCGGTGAGGTCGA  Raphanus sativus cv Rat-Tail Radish #3870
FD579026       <-- CTCGATTTGAGGTGTTCCTCTTGGAGCCGGTGGGATTCCGGTGAGGTCGA  Raphanus sativus cv Rat-Tail Radish #3870
EY929923       <-- CTCGATTTGAGGTGTTCCTCTTGGAGCCGGTGGGATTCCGGTGAGGTCGA  Raphanus sativus var. oleiformis
FD551294       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY440129       --> CTCGATTTGAGGTGTTCCTCTTGGAGCCGGGGGGATTCCGGTGAGGTCGA  Raphanus sativus cv GSK3-1
FY444106       --> CTCGATTTGAGGTGTTCCTCTTGGAGCCGGGGGGATTCCGGTGAGGTCGA  Raphanus sativus cv GSK3-1
FD969544       --> CTCGATTTGAGGTGTTCCTCTTGGAGCCGGTGGGATTCCGGTGAGGTCGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX909218       --> CTCGATTTGAGGTGTTCCTCTTGGAGCCGGTGGGATTCCGGTGAGGTCGA  Raphanus sativus cv Rat-Tail Radish #3870
EX768961       --> CTCGATTTGAGGTGTTCCTCTTGGAGCCGGTGGGATTCCGGTGAGGTCGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD530677       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD547191       --> CTCGATTTGAGGTGTTCCTCTTGGAGCCGGTGGGATTCCGGTGAGGTCGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD583081       --> CTCGATTTGAGGTGTTCCTCTTGGAGCCGGTGGGATTCCGGTGAGGTCGA  Raphanus sativus cv Rat-Tail Radish #3870
EX908076       --> CTCGATTTGAGGTGTTCCTCTTGGAGCCGGGGGGATTCCGGTGAGGTCGA  Raphanus sativus cv Rat-Tail Radish #3870
FD974981       --> CTCGATTTGAGGTGTTCCTCTTGGAGCCGGTGGGATTCCGGTGAGGTCGA  Raphanus raphanistrum subsp. raphanistrum (NY)

               751    -    801
UN16317        --> AGTTCCCGAGCAGCCTGCAGTCCTTGGTGAGACTTCGCTCACCTTCAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534863       <-- ..................................................
FD541890       <-- ..................................................
EV568405       <-- AGTTCCCGAGCAGCCTGCAGTC............................
EX765167       <-- AGTTCCCGAGCAGCCTGCAGTCCTTGGTGAGACTACGCTCACCTTCAAAG
EX904129       <-- AGTTCCCGAGCAGCCTGCAGTCCTTGGTGAGACTTCGCTCACCTTCAAAG
FD579026       <-- AGTTCCCCAGCAGCCTGCAGTCCTTGGTGAGACTTCGCTCACCTTCAAAG
EY929923       <-- AGTTCCCCAGCAGCCTGCAGTCCTTGGTGAGACTTCGCTCACCTTCAAAG
FD551294       <-- ..................................................
FY440129       --> AGTTCCCGAGCAGCCTGCAGTCCTTGGTGAGACTTCGCTCACCTTCAAAG
FY444106       --> AGTTCCCGAGCAGCCTGCAGTCCTTGGTGAGACTTCGCTCACCTTCAAAG
FD969544       --> AGTTCCCGAGCAGCCTGCAGTCCTTGGTGAGACTT...............
EX909218       --> AGTTCCCGAGCAGCCTGCAGTCCTTGGTGAGACTTCGCTCACCTTCAAAG
EX768961       --> AGTTCCC...........................................
FD530677       --> ..................................................
FD547191       --> AGTTCCCGAGCAGCCTGCAGTCCTTGGTGAGACTTCGCTCACCTTCAAAG
FD583081       --> AGTTCCCc..........................................
EX908076       --> AGTTCCCGAGCAGCCTGCAGTCCTTGGTGAGACTTCGCTCACCTTCAAAG
FD974981       --> AGTTCCCGAGCAGCCTGCAGTCCTTGGTGAGACTACGCTCACCTTCAAAG

               801    -    851
UN16317        --> ACCTGGATGGAGACGGTGGTCTGCTGGTCTTGGTACGTCGTGAAGACCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534863       <-- ..................................................
FD541890       <-- ..................................................
EV568405       <-- ..................................................
EX765167       <-- ACCTGGATGGAGACGGTTGTCTGCTGGTCTc...................
EX904129       <-- ACCTGGATGGAGACGGTGGTCTGCTGGTCTTGGTACGTCGTGAAGACCTG
FD579026       <-- ACCTGGATGGAGACGGTTGTCTGCTGGTCTTGGTACGTCGTGAAAACCTG
EY929923       <-- ACCTGGATGGAGACGGTTGTCTGCTGGTCTTGGTACGTCGTGAAAACCTG
FD551294       <-- ..................................................
FY440129       --> ACCTGGATGGAGACGGTGGTCTGCTGGTCTTGGT................
FY444106       --> ACCTGGATGGAGACGGTGGTCTGCTGGTCTTGG.................
FD969544       --> ..................................................
EX909218       --> ACCTGGATGGA.......................................
EX768961       --> ..................................................
FD530677       --> ..................................................
FD547191       --> ACCTGGATGGA.......................................
FD583081       --> ..................................................
EX908076       --> ACCTGGATGGAGACGGTGGTCTGCTGGTCTTGGTACGTCGTGAAGACCTG
FD974981       --> ACCTGGATGGA.......................................

               851    -    901
UN16317        --> AGACTTCTTGGTTGGAATAACCGTGTTTCTCGGGATCAGTTTTGTCATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534863       <-- ..................................................
FD541890       <-- ..................................................
EV568405       <-- ..................................................
EX765167       <-- ..................................................
EX904129       <-- AGACTTCTTGGTTGGAATAACTGGGTTTCTCGGGATCAGTTTTGTCATCA
FD579026       <-- AGACTTCTTGGTTGGAATAACCGTGTTTCTC...................
EY929923       <-- AGACTTCTTGGTTGGAATAACCGTGTTTCTCGGGATCAGTTTTGTCATCA
FD551294       <-- ..................................................
FY440129       --> ..................................................
FY444106       --> ..................................................
FD969544       --> ..................................................
EX909218       --> ..................................................
EX768961       --> ..................................................
FD530677       --> ..................................................
FD547191       --> ..................................................
FD583081       --> ..................................................
EX908076       --> ..................................................
FD974981       --> ..................................................

               901    -    951
UN16317        --> CTCCTCCCACGGTCTCAATACCCAAAGTGAGCGGCGCAACGTCGAGAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534863       <-- ..................................................
FD541890       <-- ..................................................
EV568405       <-- ..................................................
EX765167       <-- ..................................................
EX904129       <-- CTCCTCCCACGGTCTCAATACCCAAAGTGAGCGGCGCAACGTCGAGAAGA
FD579026       <-- ..................................................
EY929923       <-- CTCCTCCCACGGTCTCAATACCCAAAGTGAGCGGCGCAACGTCGAGAAGA
FD551294       <-- .....ccaACGGTCTCAATACCCAAAGTGAGCGGCGCAACGTCTAGAAGA
FY440129       --> ..................................................
FY444106       --> ..................................................
FD969544       --> ..................................................
EX909218       --> ..................................................
EX768961       --> ..................................................
FD530677       --> ..................................................
FD547191       --> ..................................................
FD583081       --> ..................................................
EX908076       --> ..................................................
FD974981       --> ..................................................

               951    -   1001
UN16317        --> AGGATATCTTTGGTTTCATCACCGCCTTCTCCGCTCAGAATACCACCCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534863       <-- ..................................................
FD541890       <-- ..................................................
EV568405       <-- ..................................................
EX765167       <-- ..................................................
EX904129       <-- AGGATATCc.........................................
FD579026       <-- ..................................................
EY929923       <-- AGGATATCTTTGGTTTCATCACCGCCTTCTCCGCTCAGAATACCACCCTG
FD551294       <-- AGGATATCTTTGGTTTCATCACCGCCTTCTCCGCTCAGAATACCACCCTG
FY440129       --> ..................................................
FY444106       --> ..................................................
FD969544       --> ..................................................
EX909218       --> ..................................................
EX768961       --> ..................................................
FD530677       --> ..................................................
FD547191       --> ..................................................
FD583081       --> ..................................................
EX908076       --> ..................................................
FD974981       --> ..................................................

               1001   -   1051
UN16317        --> GACAGCCGCACCATAAGCAACGGCTTCGTCGGGGTTCACACCCTTGTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534863       <-- ..................................................
FD541890       <-- ..................................................
EV568405       <-- ..................................................
EX765167       <-- ..................................................
EX904129       <-- ..................................................
FD579026       <-- ..................................................
EY929923       <-- GACAGCCGCACCATAAGCAACGGCTTCGTCGGGGTTCACACCCTTGTTTG
FD551294       <-- GACAGCCGCACCATAAGCAACGGCTTCGTCGGGGTTCACACCCTTGTTTG
FY440129       --> ..................................................
FY444106       --> ..................................................
FD969544       --> ..................................................
EX909218       --> ..................................................
EX768961       --> ..................................................
FD530677       --> ..................................................
FD547191       --> ..................................................
FD583081       --> ..................................................
EX908076       --> ..................................................
FD974981       --> ..................................................

               1051   -   1101
UN16317        --> GCTCTTTCCCTTCGAAGAAGTCCTTCAACAGCTGCTGAACCTTGGGGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534863       <-- ..................................................
FD541890       <-- ..................................................
EV568405       <-- ..................................................
EX765167       <-- ..................................................
EX904129       <-- ..................................................
FD579026       <-- ..................................................
EY929923       <-- GCTCTTTCCCTTCGAAGAAGTCCTTCAACAGCTGCTGAACCTTGGGGATC
FD551294       <-- GCTCTTTCCCTTCGAAGAAGTCCTTCAACAGCTGCTGAACCTTGGGGATC
FY440129       --> ..................................................
FY444106       --> ..................................................
FD969544       --> ..................................................
EX909218       --> ..................................................
EX768961       --> ..................................................
FD530677       --> ..................................................
FD547191       --> ..................................................
FD583081       --> ..................................................
EX908076       --> ..................................................
FD974981       --> ..................................................

               1101   -   1151
UN16317        --> CTAGTGCTTCCACCGACGAGAACAATCTCATCGATCTGACTCTTCTGTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534863       <-- ..................................................
FD541890       <-- ..................................................
EV568405       <-- ..................................................
EX765167       <-- ..................................................
EX904129       <-- ..................................................
FD579026       <-- ..................................................
EY929923       <-- CTAGTGCTTCCACCGACGAGAACAATCTCATCGATCTGACTCTTCTGTAG
FD551294       <-- CTAGTACTTACACCAACGAGAACAATCTCATCGATCTGACTCTTCTGTAG
FY440129       --> ..................................................
FY444106       --> ..................................................
FD969544       --> ..................................................
EX909218       --> ..................................................
EX768961       --> ..................................................
FD530677       --> ..................................................
FD547191       --> ..................................................
FD583081       --> ..................................................
EX908076       --> ..................................................
FD974981       --> ..................................................

               1151   -   1201
UN16317        --> ACCAGCATCGTCCATGGCCTTCTTCACGGGTCCCATTGTCTTCCTGAATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534863       <-- ..................................................
FD541890       <-- ..................................................
EV568405       <-- ..................................................
EX765167       <-- ..................................................
EX904129       <-- ..................................................
FD579026       <-- ..................................................
EY929923       <-- ACCAGCATCGTCCATGGCCTTCTTCACGGGTCC.................
FD551294       <-- ACCAGCATCATCCATGGCCTTCTTCACGGGTCCCATTGTCTTCCTGAATA
FY440129       --> ..................................................
FY444106       --> ..................................................
FD969544       --> ..................................................
EX909218       --> ..................................................
EX768961       --> ..................................................
FD530677       --> ..................................................
FD547191       --> ..................................................
FD583081       --> ..................................................
EX908076       --> ..................................................
FD974981       --> ..................................................

               1201   -   1251
UN16317        --> AGTCATTGTTAAGCTCCTCGAAACGAGCTCTGGTGAGAGGCTCAGAGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534863       <-- ..................................................
FD541890       <-- ..................................................
EV568405       <-- ..................................................
EX765167       <-- ..................................................
EX904129       <-- ..................................................
FD579026       <-- ..................................................
EY929923       <-- ..................................................
FD551294       <-- AGTCATTGTTAAGCTCCTCGAAACGAGCTCTGGTGAGAGGCTCAGAGAAA
FY440129       --> ..................................................
FY444106       --> ..................................................
FD969544       --> ..................................................
EX909218       --> ..................................................
EX768961       --> ..................................................
FD530677       --> ..................................................
FD547191       --> ..................................................
FD583081       --> ..................................................
EX908076       --> ..................................................
FD974981       --> ..................................................

               1251   -   1301
UN16317        --> TCAAGACCATCAAAGACAGTCCTCTCGGGATTAACAGCCGCCTGGTTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534863       <-- ..................................................
FD541890       <-- ..................................................
EV568405       <-- ..................................................
EX765167       <-- ..................................................
EX904129       <-- ..................................................
FD579026       <-- ..................................................
EY929923       <-- ..................................................
FD551294       <-- TCAAGACCATCAAAGACAGTCCTCTCGGGATTAACAGCCGCCTGGTTCTT
FY440129       --> ..................................................
FY444106       --> ..................................................
FD969544       --> ..................................................
EX909218       --> ..................................................
EX768961       --> ..................................................
FD530677       --> ..................................................
FD547191       --> ..................................................
FD583081       --> ..................................................
EX908076       --> ..................................................
FD974981       --> ..................................................

               1301   -   1351
UN16317        --> AGCAGCCTCACCAATGAGCCTCTCATTGTCAGTGAAACCAACCCAGGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534863       <-- ..................................................
FD541890       <-- ..................................................
EV568405       <-- ..................................................
EX765167       <-- ..................................................
EX904129       <-- ..................................................
FD579026       <-- ..................................................
EY929923       <-- ..................................................
FD551294       <-- AGCAGCCTCACCAATGAGCCTCTCATTGTCAGTGAAACCAACCCAGGAAG
FY440129       --> ..................................................
FY444106       --> ..................................................
FD969544       --> ..................................................
EX909218       --> ..................................................
EX768961       --> ..................................................
FD530677       --> ..................................................
FD547191       --> ..................................................
FD583081       --> ..................................................
EX908076       --> ..................................................
FD974981       --> ..................................................

               1351   -   1401
UN16317        --> GTGTAATACGGTTTCCTTGGTCATTAGCTATGATCTCAACATGACCATTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534863       <-- ..................................................
FD541890       <-- ..................................................
EV568405       <-- ..................................................
EX765167       <-- ..................................................
EX904129       <-- ..................................................
FD579026       <-- ..................................................
EY929923       <-- ..................................................
FD551294       <-- GTGTAATACGGTTTCCTTGGTCATTAGCTATGATCTCAACATGACCATTC
FY440129       --> ..................................................
FY444106       --> ..................................................
FD969544       --> ..................................................
EX909218       --> ..................................................
EX768961       --> ..................................................
FD530677       --> ..................................................
FD547191       --> ..................................................
FD583081       --> ..................................................
EX908076       --> ..................................................
FD974981       --> ..................................................

               1401   -   1451
UN16317        --> TTGTAAACACCGACACAGGAGTAGGTAGTACCAAGATCTATCCCTATCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534863       <-- ..................................................
FD541890       <-- ..................................................
EV568405       <-- ..................................................
EX765167       <-- ..................................................
EX904129       <-- ..................................................
FD579026       <-- ..................................................
EY929923       <-- ..................................................
FD551294       <-- TTGTAAACACCGACACAGGAGTAGGTAGTACCAAGATCTATCCCTATCAC
FY440129       --> ..................................................
FY444106       --> ..................................................
FD969544       --> ..................................................
EX909218       --> ..................................................
EX768961       --> ..................................................
FD530677       --> ..................................................
FD547191       --> ..................................................
FD583081       --> ..................................................
EX908076       --> ..................................................
FD974981       --> ..................................................

               1451   -   1501
UN16317        --> TGTTCCTAGCTTGGTAGCCTCTTCTTTGGCAGTTGAAAACGCAAATAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534863       <-- ..................................................
FD541890       <-- ..................................................
EV568405       <-- ..................................................
EX765167       <-- ..................................................
EX904129       <-- ..................................................
FD579026       <-- ..................................................
EY929923       <-- ..................................................
FD551294       <-- TGTTCCTAGCTTGGTAGCCTCTTCTTTGGCAGTTGAAAACGCAAATAAAC
FY440129       --> ..................................................
FY444106       --> ..................................................
FD969544       --> ..................................................
EX909218       --> ..................................................
EX768961       --> ..................................................
FD530677       --> ..................................................
FD547191       --> ..................................................
FD583081       --> ..................................................
EX908076       --> ..................................................
FD974981       --> ..................................................

               1501   -   1551
UN16317        --> ATCCGAAGAAGATGATTGCGAGCACAACGGTGCCGTTTGCTCCGAGTGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534863       <-- ..................................................
FD541890       <-- ..................................................
EV568405       <-- ..................................................
EX765167       <-- ..................................................
EX904129       <-- ..................................................
FD579026       <-- ..................................................
EY929923       <-- ..................................................
FD551294       <-- ATCCGAAGAAGATGATTGCGAGCACAACGGTGCCGTTTGCTCCGAGTGAG
FY440129       --> ..................................................
FY444106       --> ..................................................
FD969544       --> ..................................................
EX909218       --> ..................................................
EX768961       --> ..................................................
FD530677       --> ..................................................
FD547191       --> ..................................................
FD583081       --> ..................................................
EX908076       --> ..................................................
FD974981       --> ..................................................

               1551   -   1601
UN16317        --> CGAGCCATATCTAATGCTTCTTCTCTCTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534863       <-- ..............................
FD541890       <-- ..............................
EV568405       <-- ..............................
EX765167       <-- ..............................
EX904129       <-- ..............................
FD579026       <-- ..............................
EY929923       <-- ..............................
FD551294       <-- CGAGCCATATCTAATGCTTCTTCTCTCTGT
FY440129       --> ..............................
FY444106       --> ..............................
FD969544       --> ..............................
EX909218       --> ..............................
EX768961       --> ..............................
FD530677       --> ..............................
FD547191       --> ..............................
FD583081       --> ..............................
EX908076       --> ..............................
FD974981       --> ..............................