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Alignment for radish unigene UN16336

               1      -     51
UN16336        --> GGACTTTTCTCCCCACACATATAACCCAAGTCTATCTTTCTCTCTTTAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983027       <-- ..................................................
EV572391       <-- ..................................................
FD985469       <-- ..................................................
FD985579       <-- ..................................................
FD985634       <-- ..................................................
FD982598       <-- ..................................................
FD976827       <-- ..................................................
EY899214       --> GGACTTTTCTCCCCACACATATAGCCCAAGTCTATCTTTCTCTCTTTAGC
FD989846       --> GGACTTTTCTCCCCACACATATAACTCGAGTCTATCTTTCTCTCTTTAGC
EX890303       --> ....TTTTCTCCCCACACATATAACCCAAGTCTATCTTTCTCTCTTTAGC
FD568882       --> ....................ggAACCCAAGTCTATCTTTCTCTCTTTAGC
FD939474       --> .............................................ggAGC
EV548730       --> ..................................................
FD986327       --> ..................................................
EV567454       --> ..................................................
EY929856       --> ..................................................
FD564532       --> ..................................................
EY923591       --> ..................................................
EY924240       --> ..................................................
EY941547       --> ..................................................
FD981035       --> ..................................................
FD949732       --> ..................................................
EW726203       --> ..................................................
FD544129       --> ..................................................
FD963359       --> ..................................................
FD971843       --> ..................................................
FD989916       --> ..................................................

               51     -    101
UN16336        --> TTTAACCCCCAAAGGAAAAGATAAGAGCTTTAAGTTTCTTTACCTTCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983027       <-- ..................................................
EV572391       <-- ..................................................
FD985469       <-- ..................................................
FD985579       <-- ..................................................
FD985634       <-- ..................................................
FD982598       <-- ..................................................
FD976827       <-- ..................................................
EY899214       --> TTTAACCCCCAAAGGAAAAGATAAGAGCTTTAAGTTTCTTTACCTTCCCT
FD989846       --> TTTAAACCCCAAAGGAAAAGATAAGAGCTTTAAGTTTCTTTACCTTCTCT
EX890303       --> TTTAACCCCCAAAGGAAAAGATAAGAGCTTTAAGTTTCTTTACCTTCTCT
FD568882       --> TTTAACCCCCAAAGGAAAAGATAAGAGCTTTAAGTTTCTTTACTTTCTCT
FD939474       --> TTTAACCCCCAAAGGAAAAGATAAGAGCTTTAAGTTTCTTTACCTTCTCT
EV548730       --> .ggAACCCCCAAAGGAAAAGATAAGAGCTTTAAGTTTCTTTACCTTCTCT
FD986327       --> .ggAACCCCCAAAGGAAAAGATAAGAGCTTTAAGTTTCTTTACCTTCTCT
EV567454       --> .....ggCCCAAAGGAAAAGATAAGAGCTTTAAGTTTCTTTACCTTCTCT
EY929856       --> ...........AAGGAAAAGATAAGAGCTTTAAGTTTCTTTACCTTCTCT
FD564532       --> ............ggaAAAAGATAAGAGCTTTAAGTTTCTTTACCTTCTCT
EY923591       --> .....................TAAGAGCTTTAAGTTTCTTTACCTTCTCT
EY924240       --> .....................TAAGAGCTTTAAGTTTCTTTACCTTCTCT
EY941547       --> .....................gAAGAGCTTTAAGTTTCTTTACTTTCTCT
FD981035       --> ................................................gg
FD949732       --> ..................................................
EW726203       --> ..................................................
FD544129       --> ..................................................
FD963359       --> ..................................................
FD971843       --> ..................................................
FD989916       --> ..................................................

               101    -    151
UN16336        --> ACATGGACTTGTCTGTACTTGAAAGAGTTAATTGGCTGCAACAGCAGCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983027       <-- ..................................................
EV572391       <-- ..................................................
FD985469       <-- ..................................................
FD985579       <-- ..................................................
FD985634       <-- ..................................................
FD982598       <-- ..................................................
FD976827       <-- ..................................................
EY899214       --> ACATGGACTTGTCTGTACTTGAAAGAGTTAATTGGCTGCAACAGCAGCAA
FD989846       --> ACATGGACTTGTCTGTACTTGAAAGAGTTAATTGGCTGCAACAGCAGCAA
EX890303       --> ACATGGACTTGTCTGTACTTGAAAGAGTTAATTGGCTGCAACAGCAGCAA
FD568882       --> ACATGGACTTGTCTGTACTTGAAAGAGTTAATTGGCTGCAACAGCAGCAA
FD939474       --> ACATTGACTTGTCTGTACTTGAAAGAGTTAATTGGCTGCAACAGCAGCAA
EV548730       --> ACATGGACTTGTCTGTACTTGAAAGAGTTAATTGGCTGCAACAGCAGCAA
FD986327       --> ACATGGACTTGTCTGTACTTGAAAGAGTTAATTGGCTGCAACAGCAGCAA
EV567454       --> ACATGGACTTGTCTGTACTCGAAAGAGTTAATTGGCTGCAACAGCAGCAA
EY929856       --> ACATGGACTTGTCTGTACTTGAAAGAGTTAATTGGCTGCA-TAGCAGCAA
FD564532       --> ACATGGACTCGTCTGTACTTGAAAGAGTTAATTGGCTGCAACAGCAGCAA
EY923591       --> ACATGGACTTGTCTGTACTTGAAAGAGTTAATTGGCTGCAACAGCAGCAA
EY924240       --> ACATGGACTTGTCTGTACTTGAAAGAGTTAATTGGCTGCAACAGCAGCAA
EY941547       --> ACATGGACTTGTCTGTACTTGAAAGAGTTAATTGGCTGCAACAGCAGCAA
FD981035       --> ACATGGACTTGTCTGTACTTGAAAGAGTTAATTGGCTGCAACAGCAGCAA
FD949732       --> ..ggGGACTTGTCTGTACTTGAAAGAGTTAATTGGCTGCAACAGCAGCAA
EW726203       --> ............ggGTACTTGAAAGAGTTAATTGGCTGCAACAGCAGCAA
FD544129       --> ..................................GCTGCAACAGCAGCAA
FD963359       --> ..................................................
FD971843       --> ..................................................
FD989916       --> ..................................................

               151    -    201
UN16336        --> ATGGTCTCACCAGATTTTTTT-GAGATACTTGGCTCAGATGGGAGAGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983027       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV572391       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD985469       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD985579       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD985634       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD982598       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD976827       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY899214       --> ATGGTCTCACCAGATTTTTTT-GAGATACTTGGCTCAGATGGGAGAGAAG  Raphanus raphanistrum subsp. maritimus
FD989846       --> ATGGTCTCACCAGATTTTTTT-GAGAAACTTGGCTCAGATGGGAGAGAAG  Raphanus raphanistrum subsp. landra
EX890303       --> ATGGTCTCACCAGATTTTTTT-GAGATACTTGGCTCAGATGGGAGAGAAG  Raphanus sativus var. oleiformis
FD568882       --> ATGGTCTCACCAGACTTTTTT-GAGATACTTGGCTCAGATGGGAGAGAAG  Raphanus sativus cv Early Scarlet Globe
FD939474       --> ATGGCCTCACCAGATTTTTTT-GAGATACTTGGCTCAGATGGGAGAGAAG  Raphanus sativus var. oleiformis
EV548730       --> ATGGTCTCACCAGATTTTTTT-GAGATACTTGGCTCAGATGGGAGAGAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD986327       --> ATGGTCTCACCAGATTTTTTTTGAGATACATGGCTCAGATGGGAGAGAAG  Raphanus raphanistrum subsp. landra
EV567454       --> ATGGTCTCACCAGATTTTTTT-GAGATACTTGGCTCAGATGGGAGAGAAG  Raphanus raphanistrum subsp. landra
EY929856       --> ATGGTCTCACCAGATTTTTTT-GAGATACTTGGCTCAGATAGGAGAGAAG  Raphanus sativus var. oleiformis
FD564532       --> ATGGTCTCACCAGATTTTTTT-GAGATACTTGGCTCAGATGGGAGAGAAG  Raphanus sativus var. oleiformis
EY923591       --> ATGGTCTCACCAGATTTTTTT-GAGAAACTTGGCTCAGATGGGAGAGAAG  Raphanus raphanistrum subsp. landra
EY924240       --> ATGGTCTCACCAGATTTTTTT-GAGAAACTTGGCTCAGATGGGAGAGAAG  Raphanus raphanistrum subsp. landra
EY941547       --> ATGGTCTCACCAGACTTTTTT-GAGATACTTGGCTCAGATGGGAGAGAAG  Raphanus sativus cv Early Scarlet Globe
FD981035       --> ATGGTCTCACCAGATTTTTTT-GAGATACTTGGCTCAGATGGGAGAGAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD949732       --> ATGGTCTCACCAGACTTTTTT-GAGATACTTGGCTCAGATGGGAGAGAAG  Raphanus sativus cv Early Scarlet Globe
EW726203       --> ATGGTCTCACCAGACTTTTTT-GAGATACTTGGCTCAGATGGGAGAGAAG  Raphanus sativus cv Early Scarlet Globe
FD544129       --> ATGGTCTCACCAGATTTTTTT-GAGATACTTGGCTCAGATGGGAGAGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD963359       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD971843       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD989916       --> ..................................................  Raphanus raphanistrum subsp. landra

               201    -    251
UN16336        --> AGCTCAAAAGGGTTGAGAGTTATTTGGGAAACAATAATGATGAGGTGCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983027       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV572391       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD985469       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD985579       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD985634       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD982598       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD976827       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY899214       --> AGCTCAAAAGGGTTGAGAGTTATTTGGGAAACAATAATGATGAGGTGCAG  Raphanus raphanistrum subsp. maritimus
FD989846       --> AGCTCAAAAGGGTTGAGAGTTATTTGGGAAACAATAATGATGAGGTGCAG  Raphanus raphanistrum subsp. landra
EX890303       --> AGCTCAAAAGGGTTGAGAGTTATTTGGGAAACAATAATGATGAGGTGCAG  Raphanus sativus var. oleiformis
FD568882       --> AGCTCAAAAGGGTTGAGAGTTATTTGGGAAACAATAATGATGAGATGCAG  Raphanus sativus cv Early Scarlet Globe
FD939474       --> AGCTCAAAAGGGTTGAGAGTTATTTGGGAAACAATAATGATGAGGTGCAG  Raphanus sativus var. oleiformis
EV548730       --> AGCTCAAAAGGGTTGAGAGTTATTTGGGAAACAATAATGATGAGGTGCAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD986327       --> AGCTCAAAAGGGTTGAGAGTTATTTGGGAAACAATAATGATGAGGTGCAG  Raphanus raphanistrum subsp. landra
EV567454       --> AGCTCAAAAGGGTTGAGAGTTATTTGGGAAACAATAATGATGGGGTGCAG  Raphanus raphanistrum subsp. landra
EY929856       --> AGCTCAAAAGGGTTGAGAGTTATTTGGGAAACAATAATGATGAGGTGCAG  Raphanus sativus var. oleiformis
FD564532       --> AGCTCAAAAGGGTTGAGAGTTATTTGGGAAACAATAATGATGAGGTGCAG  Raphanus sativus var. oleiformis
EY923591       --> AGCTCAAAAGGGTTGAGAGTTATTTGGGAAACAATAATGATGAGGTGCAG  Raphanus raphanistrum subsp. landra
EY924240       --> AGCTCAAAAGGGTTGAGAGTTATTTGGGAAACAATAATGATGAGGTGCAG  Raphanus raphanistrum subsp. landra
EY941547       --> AGCTCAAAAGGGTTGAGAGTTATTTGGGAAACAATAATGATGAGATGCAG  Raphanus sativus cv Early Scarlet Globe
FD981035       --> AGCTCAAAAGGGTTGAGAGTTATTTGGGAAACAATAATGATGAGGTGCAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD949732       --> AGCTCAAAAGGGTTGAGAGTTATTTGGGAAACAATAATGATGAGATGCAG  Raphanus sativus cv Early Scarlet Globe
EW726203       --> AGCTCAAAAGGGTTGAGAGTTATTTGGGAAACAATAATGATGAGATGCAG  Raphanus sativus cv Early Scarlet Globe
FD544129       --> AGCTCAAAAGGGTTGAGAGTTATTTGGGAAACAATAATGATGAGGTGCAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD963359       --> .......................TTGGGAAACAATAATGATGAGGTGCAG  Raphanus raphanistrum subsp. maritimus
FD971843       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD989916       --> ..................................................  Raphanus raphanistrum subsp. landra

               251    -    301
UN16336        --> GGTTTCAGACATTATGAAACTATTGATGGTTGCATCTCAAGGACAAGTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983027       <-- ..................................................
EV572391       <-- ..................................................
FD985469       <-- ..................................................
FD985579       <-- ..................................................
FD985634       <-- ..................................................
FD982598       <-- ..................................................
FD976827       <-- ..................................................
EY899214       --> GGTTTCAGACATTATGAAACTATTGATGGTTGCATCTCAAGGACAAGTAG
FD989846       --> GGTTTCAGACATTATGAAACTATTGATGGTTGCATCTCAAGGACAATTAG
EX890303       --> GGTTTCAGACATTATGAAACTATTGATGGTTGCATCTCAAGGACAAGTAG
FD568882       --> GGTTTCAGACATTATGAAACTATTGATGGTTGCATCTCAAGGACAAGTAG
FD939474       --> GGTTTCAGACATTATGAAACTATTGATGGTTGCATCTCAAGGACAAGTAG
EV548730       --> GGTTTCAGACATTATGAAACTATTGATGGTTGCATCTCAAGGACAAGTAG
FD986327       --> GGTTTCAGACATTATGAAACTATTGATGGTTGCATCTCAAGGACAAGTAG
EV567454       --> GGTTTCAGACATTATGAAACTATTGATGGTTGCATCTCAAGGACAAGTAG
EY929856       --> GGTTTCAGACATTATGAAACTATTGATGGTTGCATCTCAAGGACAAGTAG
FD564532       --> GGTTTCAGACATTATGAAACTATTGATGGTTGCATCTCAAGGACAAGTAG
EY923591       --> GGTTTCAGACATTATGAAACTATTGATGGTTGCATCTCAAGGACAAGTAG
EY924240       --> GGTTTCAGACATTATGAAACTATTGATGGTTGCATCTCAAGGACAAGTAG
EY941547       --> GGTTTCAGACATTATGAAACTATTGATGGTTGCATCTCAAGGACAAGTAG
FD981035       --> GGTTTCAGACATTATGAAACTATTGATGGTTGCATCTCAAGGACAAGTAG
FD949732       --> GGTTTCAGACATTATGAAACTATTGATGGTTGCATCTCAAGGACAAGTAG
EW726203       --> GGTTTCAGACATTATGAAACTATTGATGGTTGCATCTCAAGGACAAGTAG
FD544129       --> GGTTTCAGACATTATGAAACTATTGATGGCTGCATCTCAAGGACAAGTAG
FD963359       --> GGTTTCAGACATTATGAAACTATTGATGGTTGCATCTCAAGGACAAGTAG
FD971843       --> ..................................................
FD989916       --> ..................................................

               301    -    351
UN16336        --> CTTCCAAATGGAACAAGTGAAGAACAATGAAGAAAACAGAGTCATTGCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983027       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV572391       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD985469       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD985579       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD985634       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD982598       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD976827       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY899214       --> CTTCCAAATGGAACAAGTGAAGAACAATGAAGAAAACAGAGTCATTGCCT  Raphanus raphanistrum subsp. maritimus
FD989846       --> CTTCCAAATGGAACAAGTGAAGAACAATGAAGAAAACAGAGTCATTGCCT  Raphanus raphanistrum subsp. landra
EX890303       --> CTTCCAAATGGAACAAGTGAAGAACCATGAAGAAAACATAGTCATTGCCT  Raphanus sativus var. oleiformis
FD568882       --> CTTCCAAATGGAACAAGTGAAGAACAATGAAGAAAACAGAGTCATTGCCT  Raphanus sativus cv Early Scarlet Globe
FD939474       --> CTTCCAAATGGAACAAGTGAAGAACCATGAAGAAAACATAGTCATTGCCT  Raphanus sativus var. oleiformis
EV548730       --> CTTCCAAATGGAACAAGTGAAGAACCATGAAGAAAACATAGTCATTGCCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD986327       --> CTTCCAAATGGAACAAGTGAAGAACCATGAAGAAAACATAGTCATTGCCT  Raphanus raphanistrum subsp. landra
EV567454       --> CTTCCAAATGGAACAAGTGAAGAACCATGAAGAAAACATAGTCATTGCCT  Raphanus raphanistrum subsp. landra
EY929856       --> CTTCCAAATGGAACAAGTGAAGAACAATGAAGAAAACAGAGTCATTGCCT  Raphanus sativus var. oleiformis
FD564532       --> CTTCCAAATGGAGCAAGTGAAGAACAATGAAGAAAACAGAGTCATTGCCT  Raphanus sativus var. oleiformis
EY923591       --> CTTCCAAATGGAACAAGTGAAGAACAATGAAGAAAACAGAGTCATTGCCT  Raphanus raphanistrum subsp. landra
EY924240       --> CTTCCAAATGGAACAAGTGAAGAACAATGAAGAAAACAGAGTCATTGCCT  Raphanus raphanistrum subsp. landra
EY941547       --> CTTCCAAATGGAACAAGTGAAGAACAATGAAGAAAACAGAGTCATTGCCT  Raphanus sativus cv Early Scarlet Globe
FD981035       --> CTTCCAAATGGAACAAGTGAAGAACCATGAAGAAAACATAGTCATTGCCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD949732       --> CTTCCAAATGGAACAAGTGAAGAACAATGAAGAAAACAGAGTCATTGCCT  Raphanus sativus cv Early Scarlet Globe
EW726203       --> CTTCCAAATGGAACAAGTGAAGAACAATGAAGAAGACAGAGTCATTGCCT  Raphanus sativus cv Early Scarlet Globe
FD544129       --> CTTCCAAATGGAACAAGTGAAGAACAATGAAGAAAACAGAGTCATTGCCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD963359       --> CTTCCAAATGGAACAAGTGAAGAACCATGAAGAAAACATAGTCATTGCCT  Raphanus raphanistrum subsp. maritimus
FD971843       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD989916       --> ..................................................  Raphanus raphanistrum subsp. landra

               351    -    401
UN16336        --> TGCAGCCCAAGAGAAAAACAGAGGGTAAGACAGAAAAGATAGAGAACAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983027       <-- ....................cAGGGTAAGACAGAAAAGATAGAGAACAAG  Raphanus raphanistrum subsp. landra
EV572391       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD985469       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD985579       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD985634       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD982598       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD976827       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY899214       --> TGCAGCACAAGAGAAAAACAGAGGGTAAGACAGAAAAGATAGAGAACAAG  Raphanus raphanistrum subsp. maritimus
FD989846       --> TGCAGCACAAGAGAAAAACAGAGGGTAAGACAGAAAAGATAGAGAACAAG  Raphanus raphanistrum subsp. landra
EX890303       --> TGCAGCCCAAGAGAAAAACAGAGGGTAAGACAGAAAAGATAGAGAACAAG  Raphanus sativus var. oleiformis
FD568882       --> TGCAGCCCAAGAGAAAAACAGAGGGTAAGACAGAAAAAATAGAGAACAAA  Raphanus sativus cv Early Scarlet Globe
FD939474       --> TGCAGCCCAAGAGAAAAACAGAGGGTAAGACAGAAAAGATAGAGAACAAG  Raphanus sativus var. oleiformis
EV548730       --> TGCAGCCCAAGAGAAAAACAGAGGGTAAGACAGAAAAAATAGAGAACAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD986327       --> TGCAGCCCAAGAGAAAAACAGAGGGTAAGACAGAAAAAATAGAGAACAAA  Raphanus raphanistrum subsp. landra
EV567454       --> TGCAGCCCAAGAGAAAAACAGAGGGTAAGACAGAAAAAATAGAGAACAAA  Raphanus raphanistrum subsp. landra
EY929856       --> TGCAGCACAAGAGAAAAACAGAGGGTAAGACAGAAAAGATAGAGAACAAC  Raphanus sativus var. oleiformis
FD564532       --> TGCAGCACAAGAGAAAAACAGAGGGTAAGACAGAAAAGATAGAGAACAAG  Raphanus sativus var. oleiformis
EY923591       --> TGCAGCACAAGAGAAAAACAGAGGGTAAGACAGAAAAGATAGAGAACAAG  Raphanus raphanistrum subsp. landra
EY924240       --> TGCAGCACAAGAGAAAAACAGAGGGTAAGACAGAAAAGATAGAGAACAAG  Raphanus raphanistrum subsp. landra
EY941547       --> TGCAGCCCAAGAGAAAAACAGAGGGTAAGACAGAAAAAATAGAGAACAAA  Raphanus sativus cv Early Scarlet Globe
FD981035       --> TGCAGCCCAAGAGAAAAACAGAGGGTAAGACAGAAAAAATAGAGAACAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD949732       --> TGCAGCCCAAGAGAAAAACAGAGGGTAAGACAGAAAAAATAGAGAACAAA  Raphanus sativus cv Early Scarlet Globe
EW726203       --> TGCAGCCCAAGAGAAAAACAGAGGGTAAGACAGAAAAAATAGAGAACAAA  Raphanus sativus cv Early Scarlet Globe
FD544129       --> TGCAGCCCAAGAGAAAAACAGAGGGTAAGACAGAAAAGATAGAGAACAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD963359       --> TGCAGCCCAAGAGAAAAACAGAGGGTAAGACAGAAAAAATAGAGAACAAA  Raphanus raphanistrum subsp. maritimus
FD971843       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD989916       --> ..................................................  Raphanus raphanistrum subsp. landra

               401    -    451
UN16336        --> AAGAAGAAGAAGATCAAAACAGAGGATGAAACAGAGTCAAGCATGAAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983027       <-- AAGAAGAAGAAGATCAAAACAGAGGATGAAACAGAGTCAAGCATGAAAGG  Raphanus raphanistrum subsp. landra
EV572391       <-- ...................CAGAGGATGAAACAGAGTCAAGCATGAAAGG  Raphanus raphanistrum subsp. landra
FD985469       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD985579       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD985634       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD982598       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD976827       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY899214       --> AAGAAGAAGAAGATCAAAACAGAGGATGAAACAGAGTCAAGCATGAAAGG  Raphanus raphanistrum subsp. maritimus
FD989846       --> AAGAAGAAGAAGATCAAAACAGAGGATGAAACAGAGTCAAGCATGAAGGG  Raphanus raphanistrum subsp. landra
EX890303       --> AAGAAGAAGAAGATCAAAACAGAGGATGAAACAGAGTCAAGCATGAAAGG  Raphanus sativus var. oleiformis
FD568882       --> AAGAAGAAGA---TCAAAACAGAGGATGAAACAGAGTCAAGCATGAAAGG  Raphanus sativus cv Early Scarlet Globe
FD939474       --> AAGAAGAAGAAGATCAAAACAGAGGATGAAACAGAGTCAAGCATGAAAGG  Raphanus sativus var. oleiformis
EV548730       --> --G-AGAAGAAGATCAAAACAGAGGATGAAACAGAGTCAAGCATGAAAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD986327       --> AAGAAGAAGA---TCAAAACAGAGGATGAAACAGAGTCAAGCATGAAAGG  Raphanus raphanistrum subsp. landra
EV567454       --> AAGAAGAAGA---TCAAAACAGAGGATGAAACAGAGTCAAGCATGAAAGG  Raphanus raphanistrum subsp. landra
EY929856       --> AAGAAGAAGAAGATCAAAACAGAGGATGAAACAGAGTCAAGCATGAAAGG  Raphanus sativus var. oleiformis
FD564532       --> AAGAAGAAGAAGAT....................................  Raphanus sativus var. oleiformis
EY923591       --> AAGAAGAAGAAGATCAAAACAGAGGATGAAACAGAGTCAAGCATGAAAGG  Raphanus raphanistrum subsp. landra
EY924240       --> AAGAAGAAGAAGATCAAAACAGAGGATGAAACAGAGTCAAGCATGAAAGG  Raphanus raphanistrum subsp. landra
EY941547       --> AAGAAGAAGA---TCAAAACAGAGGATGAAACAGAGTCAAGCATGAAAGG  Raphanus sativus cv Early Scarlet Globe
FD981035       --> AAGAAGAAGA---TCAAAACAGAGGATGAAACAGAGTCAAGCATGAAAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD949732       --> AAGAAGAAGA---TCAAAACAGAGGATGAAACAGAGTCAAGCATGAAAGG  Raphanus sativus cv Early Scarlet Globe
EW726203       --> AAGAAGAAGA---TCAAAACAGAGGATGAAACAGAGTCAAGCATGAAAGG  Raphanus sativus cv Early Scarlet Globe
FD544129       --> AAGAAGAAGA---TCAAAACAGAGGATGAAACAGAGTCAAGCATGAAAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD963359       --> AAGAAGAAGA---TCAAAACAGAGGATGAAACAGAGTCAAGCATGAAAGG  Raphanus raphanistrum subsp. maritimus
FD971843       --> ...............................................gGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD989916       --> ..................................................  Raphanus raphanistrum subsp. landra

               451    -    501
UN16336        --> AAAATCAAACATGAGCAACTCAGAGACATCCTCAGAGATTCAGAAGCGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983027       <-- AAAATCAAACATGAGCAACTCAGAGACATCCTCAGAGATTCAGAAGCGAG
EV572391       <-- AAAATCAAACATGAGCAACTCAGAGACATCCTCAGAGATTCAGAAGCGAG
FD985469       <-- ...............gAACTCATAGACATCCTCAGAGATTCAGAAGCGAG
FD985579       <-- ..........................CATCCTCAGAGATTCAGAAGCGAG
FD985634       <-- ..................................GAGATTCAGAAGCGAG
FD982598       <-- ..................................................
FD976827       <-- ..................................................
EY899214       --> AAAATCAAACATGAGCAACTCAGAGACATCCTCAGAGATTCAGAAGCGAG
FD989846       --> AAAATCAAACATGAGCAACTCAGAGACATCCTCAGAGATTCAGAAGCGAG
EX890303       --> AAAATCAAACATGAGCAACTCAGAGACATCCTCAGAGATTCAGAAGCGAG
FD568882       --> AAAATCAAACATGAGCAACTCAGAGACATCCTCAGAGATTCAGAAGCGAG
FD939474       --> AAAATCAAACATGAGCAACTCAGAGACATCCTCAGAGATTCAGAAGCGAG
EV548730       --> AAAATCAAACATGAGCAACTCAGAGACATCCTCAGAGATTCAGAAGCGAG
FD986327       --> AAAATCAAACATGAGCAACTCAGAGACATCCTCAGAGATTCAGAAGCGAG
EV567454       --> AAAATCAAACATGAGCAACTCAGAGACATCCTCAGAGATTCAGAAGCGAG
EY929856       --> AAAATCAAACATGAGCAACTCAGAGACATCCTCAGAGATTCAGAAGCGAG
FD564532       --> ..................................................
EY923591       --> AAAATCAAACATGAGCAACTCAGAGACATCCTCAGAGATTCAGAAGCGAG
EY924240       --> AAAATCAAACATGAGCAACTCAGAGACATCCTCAGAGATTCAGAAGCGAG
EY941547       --> AAAATCAAACATGAGCAACTCAGAGACATCCTCAGAGATTCAGAAGCGAG
FD981035       --> AAAATCAAACATGAGCAACTCAGAGGCATCCTCAGAGATTCAGAAGCGAG
FD949732       --> AAAATCAAACATGAGCAACTCAGAGACATCCTCAGAGATTCAGAAGCGAG
EW726203       --> AAAATCAAACATGAGCAACTCAGAGACGTCCTCAGAGATTCAGAAGCGAG
FD544129       --> AAAATCAAACATGAGCAACTCAGAGACATCCTCAGAGATTCAGAAGCGAG
FD963359       --> AAAATCAAACATGAGCAACTCAGAGACATCCTCAGAGATTCAGAAGCGAG
FD971843       --> AAAATCAAACAAGAGCAACTCAGAGACATCCTCAGAGATTCAGAAGCGAG
FD989916       --> ...............gAACTCATAGACATCCTCAGAGATTCAGAAGCGAG

               501    -    551
UN16336        --> ACTACATCCATGTGAGAGCTAGGCGAGGTGAAGCCACCGACAGACATAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983027       <-- ACTACATCCATGTGAGAGCTAGGCGAGGTGAAGCCACCGACAGACATAGC  Raphanus raphanistrum subsp. landra
EV572391       <-- ACTACATCCATGTGAGAGCTAGACGAGGTGAAGCCACCGACAGACATAGC  Raphanus raphanistrum subsp. landra
FD985469       <-- ACTACATCCATGTGAGAGCTAGGCGGGGTGAAGCCACCGACAGACATAGC  Raphanus raphanistrum subsp. landra
FD985579       <-- ACTACATCCATGTGAGAGCTAGGCGATGTGAAGCCACCGACAGACATAGC  Raphanus raphanistrum subsp. landra
FD985634       <-- ACTACATCCATGTGAGAGCTAGGCGGGGTGAAGCCACCGACAGACATAGC  Raphanus raphanistrum subsp. landra
FD982598       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD976827       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY899214       --> ACTACATCCATGTGAGAGCTAGGCGAGGTGAAGCCACCGACAGACATAGC  Raphanus raphanistrum subsp. maritimus
FD989846       --> ACTACATCCATGTGAGAGCTAGGCGATGTGAAGCCACCGACAGACATAGC  Raphanus raphanistrum subsp. landra
EX890303       --> ACTACATCCATGTGAGAGCTAGGCGAGGTGAAGCCACCGACAGACATAGC  Raphanus sativus var. oleiformis
FD568882       --> ACTACATCCATGTGAGAGCTAGACGAGGTGAAGCCACCGACAGACATAGC  Raphanus sativus cv Early Scarlet Globe
FD939474       --> ACTACATCCATGTGAGAGCTAGGCGAGGTGAAGCCACCGACAGACATAGC  Raphanus sativus var. oleiformis
EV548730       --> ACTACATCCATGTGAGAGCTAGACGAGGTGAAGCCACCGACAGACATAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD986327       --> ACTACATCCATGTGAGAGCTAGACGAGGTGAAGCCACCGACAGACATAGC  Raphanus raphanistrum subsp. landra
EV567454       --> ACTACATCCATGTGAGAGCTAGACGAGGTGAAGCCACCGACAGACATAGC  Raphanus raphanistrum subsp. landra
EY929856       --> ACTACATCCATGTGAGAGCTAGGCGAGGTGAAGCCACCGACAGACATAGC  Raphanus sativus var. oleiformis
FD564532       --> ..................................................  Raphanus sativus var. oleiformis
EY923591       --> ACTACATCCATGTGAGAGCTAGGCGAGGTGAAGCCACCGACAGACATAGC  Raphanus raphanistrum subsp. landra
EY924240       --> ACTACATCCATGTGAGAGCTAGGCGAGGTGAAGCCACCGACAGACATAGC  Raphanus raphanistrum subsp. landra
EY941547       --> ACTACATCCATGTGAGAGCTAGACGAGGTGAAGCCACCGACAGACATAGC  Raphanus sativus cv Early Scarlet Globe
FD981035       --> ACTACATCCATGTGAGAGCTAGACGAGGTGAAGCCACCGACAGACATAAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD949732       --> ACTACATCCATGTGAGAGCTAGACGAGGTGAAGCCACCGACAGACATAGC  Raphanus sativus cv Early Scarlet Globe
EW726203       --> ACTACATCCATGTGAGAGCTAGACGAGGTGAAGCCACCGACAGACATAGC  Raphanus sativus cv Early Scarlet Globe
FD544129       --> ACTACATCCATGTGAGAGCTAGACGAGGTGAAGTCACCGACAGACATAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD963359       --> ACTACATCCATGTGAGAGCTAGACGAGGTGAAGCCACCGACAGACATAGC  Raphanus raphanistrum subsp. maritimus
FD971843       --> ACTACATCCATGTGAGAGCTAGGCGAGGTGAAGCCACCGACAGACATAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD989916       --> ACTACATCCATGTGAGAGCTAGGCGGGGTGAAGCCACCGACAGACATAGC  Raphanus raphanistrum subsp. landra

               551    -    601
UN16336        --> TTAGCAGAAAGGGCAAGGAGAGAAAAGTTAAGCAAGAAGATGAAATGTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983027       <-- TTAGCAGAAAGGGCAAGGAGAGAAAAGTTAAGCAAGAAGATGAAATGTCT
EV572391       <-- TTAGCAGAAAGGGCAAGGAGAGAAAAGTTAAGCAAGAAGATGAAATGTCT
FD985469       <-- TTAGCAGAAAGGGCAAGGAGAGAAAAGTTAAGCAAGAAGATGAAATGTCT
FD985579       <-- TTAGCAGAAAGGGCAAGGAGAGAAAAGTTAAGCAATAAGATGAAATGTCT
FD985634       <-- TTAGCAGAAAGGGCAAGGAGAGAAAAGTTAAGCAAGAAGATGAAATGTCT
FD982598       <-- .................GAGAGAAAAGTTAAGCAAGAAGATGAAATGTCT
FD976827       <-- ..................................................
EY899214       --> TTAGCAGAAAGGGCAAGGAGAGAAAAGTTAAGCAAGAAGATGAAATGTCT
FD989846       --> TTAGCAGAAAGGGCAAGGAGAGAAAAGTTAAGCAATAAGATGAAATGTCT
EX890303       --> TTAGCAGAAAGGGCAAGGAGAGAAAAGTTAAGCAAGAAGATGAAATGTCT
FD568882       --> TTAGCAG...........................................
FD939474       --> TTAGCAGAAAGGGCAAGGAGAGAAAAGTTAAGCAAGAAGATGAAATGTCT
EV548730       --> TTAGCAGAAAGGGCAAGGAGAGAAAAGTTAAGCAAGAAGATGAAATGTCT
FD986327       --> TTAGCAGAAAGGGCAAGGAGAGAAAAGTTAAGCAAGAAGATGAAATGTCT
EV567454       --> TTAGCAGAAAGGGCAAGGAGAGAAAAGTTAAGCAAGAAGATGAAATGTCT
EY929856       --> TTAGCAGAAAGGGCAAGGAGAGAAAAGTTAAGCAAGAAGATGAAATGTCT
FD564532       --> ..................................................
EY923591       --> TTAGCAGAAAGGGCAAGGAGAGAAAAGTTAAGCAAGAAGATGAAATGTCT
EY924240       --> TTAGCAGAAAGGGCAAGGAGAGAAAAGTTAAGCAAGAAGATGAAATGTCT
EY941547       --> TTAGCAGAAAGGGCAAGGAGAGAAAAGTTAAGCAAGAAGATGAAATGTCT
FD981035       --> TTAGCAGAAAGGGCAAGGAGAGAAAAGTTAAGCAAGAAGATGAAATGTCT
FD949732       --> TTAGCAGAAAGGGCAAGGAGAGAAAAGTTAAGCAAGAAGATGAAATGTCT
EW726203       --> TTAGCAGAAAGGGCAAGGAGAGAAAAGTTAAGCAAGAAGATGAAATGTCT
FD544129       --> TTAGCAGAAAGGGCAAGGAGAGAAAAGTTAAGCAAGAAGATGAAATGTCT
FD963359       --> TTAGCAGAAAGGGCAAGGAGAGAAAAGTTAAGCAAGAAGATGAAATGTCT
FD971843       --> TTAGCAGAAAGGGCAAGGAGAGAAAAGTTAAGCAAGAAGATGAAATGTCT
FD989916       --> TTAGCAGAAAGGGCAAGGAGAGAAAAGTTAAGCAAGAAGATGAAATGTCT

               601    -    651
UN16336        --> TCAAGACATTGTTCCTGGATGCAATAAAGTTACTGG-TAAAGCCGGTATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983027       <-- TCAAGACATTGTTCCTGGATGCAATAAAGTTACTGG-TAAAGCCGGTATG  Raphanus raphanistrum subsp. landra
EV572391       <-- TCAAGACATTGTTCCTGGATGCAACAAAGTTACTGG-TAAAGCCGGTATG  Raphanus raphanistrum subsp. landra
FD985469       <-- TCAAGACATTGTTCCTGGATGCAATAAAGTTACTGG-TAAAGCCGGTATG  Raphanus raphanistrum subsp. landra
FD985579       <-- TCAAGACATTGTTCCTGGATGCAATAAAGTTACTGG-TAAAGCCGGTATG  Raphanus raphanistrum subsp. landra
FD985634       <-- TCAAGACATTGTTCCTGGATGCAATAAAGTTACTGG-TAAAGCCGGTATG  Raphanus raphanistrum subsp. landra
FD982598       <-- TCAAGACATTGTTCCTGGATGCAACAAAGTTACTGG-TAAAGCCGGTATG  Raphanus raphanistrum subsp. landra
FD976827       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY899214       --> TCAAGACATTGTTCCTGGATGCAATAAAGTTACTGG-TAAAGCCGGTATG  Raphanus raphanistrum subsp. maritimus
FD989846       --> TCAAGACATTGTTCCTGGATGCAATAAAGTTACTGG-TAAA.........  Raphanus raphanistrum subsp. landra
EX890303       --> TCAAGACATTGTTCCTGGATGCAATAAAGTTACTGG-TAAAGCCGGTATG  Raphanus sativus var. oleiformis
FD568882       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD939474       --> TCAAGACATTGTTCCTGGATGCAATAAAGTTACTGG-TAAAGCCGGTATG  Raphanus sativus var. oleiformis
EV548730       --> TCAAGACATTGTTCCTGGATGCAACAAAGTTACTGG-TAAAGCCGGTATG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD986327       --> TCAAGACATTGTTCCTGGATGCAACAAAGTTACTGG-TAAAGCCGGTATG  Raphanus raphanistrum subsp. landra
EV567454       --> TCAAGACATTGTTCCTGGATGCAACAAAGTTACTGGGTAAAGCCGGTATG  Raphanus raphanistrum subsp. landra
EY929856       --> TCAAGACATTGTTCCTGGATGCAATAAAGTTACTGG-TAAAGCCGGTATG  Raphanus sativus var. oleiformis
FD564532       --> ..................................................  Raphanus sativus var. oleiformis
EY923591       --> TCAAGACATTGTTCCTGGATGCAATAAAGTTACTGG-TAAAGCCGGTATG  Raphanus raphanistrum subsp. landra
EY924240       --> TCAAGACATTGTTCCTGGATGCAATAAAGTTACTGG-TAAAGCCGGTATG  Raphanus raphanistrum subsp. landra
EY941547       --> TCAAGACATTGTTCCTGGATGCAACAAAGTTACTGG-TAAAGCCGGTATG  Raphanus sativus cv Early Scarlet Globe
FD981035       --> TCAAGACATTGTTCCTGGATGCAACAAAGTTACTGG-TAAAGCCGGTATG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD949732       --> TCAAGACATTGTTCCTGGATGCAACAAAGTTACTGG-TAAAGCCGGTATG  Raphanus sativus cv Early Scarlet Globe
EW726203       --> TCAAGACATTGTTCCTGGATGCAACAAAGTTACTGG-TAAAGCCGGCATG  Raphanus sativus cv Early Scarlet Globe
FD544129       --> TCAAGACATTGTTCCTGGATGCAATAAAGTTACTGG-TAAAGCCGGTATG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD963359       --> TCAAGACATTGTTCCTGGATGCAACAAAGTTACTGG-TAAAGCCGGTATG  Raphanus raphanistrum subsp. maritimus
FD971843       --> CCAAGACATTGTTCCTGGATGCAATAAAGTTACTGG-TAAAGCCGGTATG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD989916       --> TCAAGACATTGTTCCTGGATGCAATAAAGTTACTGG-TAAAGCCGGTATG  Raphanus raphanistrum subsp. landra

               651    -    701
UN16336        --> CTTGATGAGATCATCAACTATGTCCAATCTCTGCAGCAACAAGTCGAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983027       <-- CTTGATGAGATCATCAACTATGTCCAATCTCTGCAGCAACAAGTCGAGTT
EV572391       <-- CTTGATGAGATCATCAACTATGTCCAATCTCTGCAGCAACAAGTCGAGTT
FD985469       <-- CTTGATGAGATCATCAACTATGTCCAATCTCTGCAGCAACAAGTCGAGTT
FD985579       <-- CTTGATGAGATCATCAACTATGTCCAATCTCTGCAGCAACAAGTCGAGTT
FD985634       <-- CTTGATGAGATCATCAACTATGTCCAATCTCTGCAGCAACAAGTCGAGTT
FD982598       <-- CTTGATGAGATCATCAACTATGTCCAATCTCTGCAGCAACAAGTCGAGTT
FD976827       <-- ..................................................
EY899214       --> CTTGATGAGATCATCAACTATGTCCAATCTCTGCAACAACAAGTCGAGTT
FD989846       --> ..................................................
EX890303       --> CTTGATGAGGTCATCAACTATGTCCAATCTCTGCAGCAACAAGTCGAGTT
FD568882       --> ..................................................
FD939474       --> CTTGATGAGATCATCAACTATGTCCAATCTCTGCAGCAACAAGTCGAGTT
EV548730       --> CTTGATGAGATCATCAACTATGTCCAATCTCTGCAGCAACAAGTCGAGTT
FD986327       --> CTTGATGAGATCATCAACTATGTCCAATCTCTGCAGCAACAAGTCGAGTT
EV567454       --> CTTGATGAGATCATCAACTATGTCCAATCTCTGCAGCAACAAGTCGAGTT
EY929856       --> CTTGATGAGATCATCAACTATGTCCAATCTCTGCAACAACAAGTCGAGTT
FD564532       --> ..................................................
EY923591       --> CTTAATGAGATCATCAACTATGTCCAATCTCTGCAGCAATAAGTCGAGTT
EY924240       --> CTTAATGAGATCATCAACTATGTCCAATCTCTGCAGCAATAAGTCGAGTT
EY941547       --> CTTGATGAGATCATCAACTATGTCCAATCTCTGCAGCAACAAGTCGAGTT
FD981035       --> CTTGATGAGATCATCAACTATGTCCAATCTCTGCAGCAACAAGTCGAGTT
FD949732       --> CTTGATGAGATCATCAACTATGTCCAATCTCTGCAGCAACAAGTCGAGTT
EW726203       --> CTTGATGAGATCATCAACTATGTCCAATCTCTGCAGCAACAAGTCGAGTT
FD544129       --> CTTGACGAGCTCATCAACTATGTCCAATCTCTGCAGCAACAAGTCGAGTT
FD963359       --> CTTGATGAGATCATCAACTATGTCCAATCTCTGCAGCAACAAGTCGAGTT
FD971843       --> CTTGATGAGATCATCGACTATGTCCAATCTCTGCAGCAACAAGTCGAGTT
FD989916       --> CTTGATGAGATCATCAACTATGTCCAATCTCTGCAGCAACAAGTCGAGTT

               701    -    751
UN16336        --> CTTGTCTATGAAACTCTCTGTCTTAAATCCAGAGCTTGAGTTTCATATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983027       <-- CTTGTCTATGAAACTCTCTGTCTTAAATCCAGAGCTTGAGTTTCATATCA
EV572391       <-- CTTGTCTATGAAACTCTCTGTCTTAAATCCAGAGCTTGAGTTTCATATCA
FD985469       <-- CTTGTCTATGAAACTCTCTGTCTTAAATCCAGAGCTTGAGTTTCATATCA
FD985579       <-- CTTGTCTATGAAACTCTCTGTCTTAAATCCAGAGCTTGAGTTTCATATCA
FD985634       <-- CTTGTCTATGAAACTCTCTGTCTTAAATCCAGAGCTTGAGTTTCATATCA
FD982598       <-- CTTGTCTATGAAACTCTCTGTCTTAAATCCAGAGCTTGAGTTTCATATCA
FD976827       <-- ..................................................
EY899214       --> CTTGTCTATGAAACTCTCTGTCTTAAATCCAGAGCTTGAGTTc.......
FD989846       --> ..................................................
EX890303       --> CTTGTCTATGAAACTCTCTGTCTTAAATCCAGAGCTTGAGTTTCATATCA
FD568882       --> ..................................................
FD939474       --> CTTGTCTATGAAACTCTCTGTCTTAAATCCAGAGCTTGAGTTTCATATCA
EV548730       --> CTTGTCTATGAAACTCTCTGTCTTAAATCCAGAGCTTGAGTTTCATATCA
FD986327       --> CTTGTCTATGAAACTCTCTGTCTTAAATCCAGAGCTTGAGTTTCATATCA
EV567454       --> CTTGTCTATGAAACTCTCTGTCTTAAATCCAGAGCTTGAGTTTCATATCA
EY929856       --> CTTGTCTATGAAACTCTCTGTCTTAAATCCAGAGCTTGAGTTTCATATCA
FD564532       --> ..................................................
EY923591       --> CTTGTCTATGAAACTCTCTGTCTTAAATCCAGAGCTTGAGTTTCATATCA
EY924240       --> CTTGTCTATGAAACTCTCTGTCTTAAATCCAGAGCTTGAGTTTCATATCA
EY941547       --> CTTGTCTATGAAACTCTCTGTCTTAAATCCAGAGCTTGAGTTTCATATCA
FD981035       --> CTTGTCTATGAAACTCTCTGTCTTAAATCCAGAGCTTGAGTTTCATATCA
FD949732       --> CTTGTCTATGAAACTCTCTGTCTTAAATCCAGAGCTTGAGTTTCATATCA
EW726203       --> CTTGTCTATGAAACTCTCTGTCTTAAATCCAGAGCTTGAGTTTCATATCA
FD544129       --> CTTGTCTAT.........................................
FD963359       --> CTTGTCTATGAAACTCTCTGTCTTAAATCCAGAGCTTGAGTTTCATATCA
FD971843       --> CTTGTCTATGAAACTCTCTGTCTTAAATCCAGAGCTTGAGTTTCATATCA
FD989916       --> CTTGTCTATGAAACTCTCTGTCTTAAATCCAGAGCTTGAGTTTCATATCA

               751    -    801
UN16336        --> ATGAATTATCCACTAAACAGTTTCAG--TTGCTTCACAGATCTTTCAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983027       <-- ATGAATTATCCACTAAACAGTTTCAGGCTTGCTTCACAGATCTTTCAGAA  Raphanus raphanistrum subsp. landra
EV572391       <-- ATGAATTATCCACTAAACAGTTTCAGGCTTGCTTCACAGATCTTTCAGAA  Raphanus raphanistrum subsp. landra
FD985469       <-- ATGAATTATCCACTAAACAG--G--C--TTGCTTCACAGATCTTTCAGAA  Raphanus raphanistrum subsp. landra
FD985579       <-- ATGAATTATCCACTAAACAGTTTCAGGCTTGCTTCACAGATCTTTCAGAA  Raphanus raphanistrum subsp. landra
FD985634       <-- ATGAATTATCCACTAAACAG--G--C--TTGCTTCACAGATCTTTCAGAA  Raphanus raphanistrum subsp. landra
FD982598       <-- ATGAATTATCCACTAAACAGTTTCAGGCTTGCTTCACAGATCCTTCAGAA  Raphanus raphanistrum subsp. landra
FD976827       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY899214       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD989846       --> ..................................................  Raphanus raphanistrum subsp. landra
EX890303       --> ATGAATTATCCACTAAACAGTTTCA.........................  Raphanus sativus var. oleiformis
FD568882       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD939474       --> ATGAATTATCCACTAAACAGTTTCAG-CTTGCTTCACAGATCTTCCAGA-  Raphanus sativus var. oleiformis
EV548730       --> ATGAATTATCCACTAAACAGTTTCAGGCTTGCTTCACAGATCTTTCAGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD986327       --> ATGAATTATCCACTAAACAGTT............................  Raphanus raphanistrum subsp. landra
EV567454       --> ATGAATTATCCACTAAACAGTTTCAGACTTGCTTCACAGATCTTTCAGAA  Raphanus raphanistrum subsp. landra
EY929856       --> ATGAATTATCCACTAAACAGTTTCAG-CTTGCTTCACAGATCTTCCAGAA  Raphanus sativus var. oleiformis
FD564532       --> ..................................................  Raphanus sativus var. oleiformis
EY923591       --> ATGAATTATCCACTAAACAGTTTCAG-CTTGCTTCACAGATC........  Raphanus raphanistrum subsp. landra
EY924240       --> ATGAATTATCCACTAAACAGTTTCAG-CTTGCTTCACAGATCTTTCAGAA  Raphanus raphanistrum subsp. landra
EY941547       --> ATGAATTATCCACTAA..................................  Raphanus sativus cv Early Scarlet Globe
FD981035       --> ATGAATTATCCACTAAACAGTTTCAG-CTTGCTTCACAGATCTTTCAG..  Raphanus raphanistrum subsp. raphanistrum (NY)
FD949732       --> ATGAATTATCCACTAAACACG--CA----TGCTTCACAGATCTTCCAGAA  Raphanus sativus cv Early Scarlet Globe
EW726203       --> ATGAATTATCCACTAAACAGTT............................  Raphanus sativus cv Early Scarlet Globe
FD544129       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD963359       --> ATGAATTATCCACTAAACAGTTTCAGGCTTGCTTCACAGATCTTTCAGAA  Raphanus raphanistrum subsp. maritimus
FD971843       --> ATGAATTATCCACTAAACAGTTTCAGGCTTGCTTCACAGATCTTCCAGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD989916       --> ATGAATTATCCACTAAACAGG--C----TTGCTTCACAGATCTTTCAGAA  Raphanus raphanistrum subsp. landra

               801    -    851
UN16336        --> GCTGTCCCAAAGCAGCCAATGATGGTGGATGCAAGTTCTTTTCCGTTACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983027       <-- GCTGTCCCAAAGCAGCCAATGATGGTGGATGCAAGTTCTTTTCCGTTACA
EV572391       <-- GCTGTCCCAAAGCAGCCAATGATGGTGGATGCAAGTTCTTTTCCGTTACA
FD985469       <-- GCTGTCCCAAAGCAGCCAATGATGGTGGATGCAAGTTCTTTTCCGTTACA
FD985579       <-- GCTGTCCCAAAGCAGCCAATGATGGTGGATGCAAGTTCTTTTCCGTTACA
FD985634       <-- GCTGTCCCAAAGCAGCCAATGATGGTGGATGCAAGTTCTTTTCCGTTACA
FD982598       <-- GCTGTCCCAAAGCAGCCAATGATGGTGGATGCAAGTTCTTTTCCGTTACA
FD976827       <-- ..................................................
EY899214       --> ..................................................
FD989846       --> ..................................................
EX890303       --> ..................................................
FD568882       --> ..................................................
FD939474       --> GCTGTCCCAAAGCAGCCAATGATGGTGGATGCAAGTTCTTTTCCATTACA
EV548730       --> GCTGTCCCAAAGCAGCCAATGATGGTGGATGCAAGTTCTTTTCCGTTACA
FD986327       --> ..................................................
EV567454       --> GCTGTCCCAAAGCAGCCAATGATGGTGGATGCAAGTTCTTTTCCGTTACA
EY929856       --> GCTGTCTCAA-GCAGCCAATGATGGTGGATGCAAG...............
FD564532       --> ..................................................
EY923591       --> ..................................................
EY924240       --> GCCGTCCCAA-GCAGCCAATGATGGTGGATGCAAGTTCTTTTCCGTTACA
EY941547       --> ..................................................
FD981035       --> ..................................................
FD949732       --> GCTGTCTCAAAGCAGCCAATGATGGTGGATGCAAGTTCTTTTCCATTACA
EW726203       --> ..................................................
FD544129       --> ..................................................
FD963359       --> GCTGTCCCAAAGCAGCCAATGATGGTGGATGCAAGTTCTTTTCCGTTACA
FD971843       --> GCTGTCCCAAAGCAGCCAATGATGGTGGATGCAAGTTCTTTTCCATTACA
FD989916       --> GCTGTCCCAAAGCAGCCAATGATGGTGGATGCAAGTTCTTTTCCGTTACA

               851    -    901
UN16336        --> GCAGCATGGTTCTCTAGATTACTCTCTCATAAATTCAAACCAAACCACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983027       <-- GCAGCATGGTTCTCTAGATTACTCTCTCATAAATTCAAACCAAACCACAA
EV572391       <-- GCAGCATGGTTCTCTAGATTACTCTCTCATAAATTCAAACCAAACCACAA
FD985469       <-- GCAGCATGGTTCTCTAGATTACTCTCTCATAAATTCAAACCAAACCACAA
FD985579       <-- GCAGCATGGTTCTCTAGATTACTCTCTCATAAATTCAAACCAAACCACAA
FD985634       <-- GCAGCATGGTTCTCTAGATTACTCTCTCATAAATTCAAACCAAACCACAA
FD982598       <-- GCAGCATGGTTCTCTAGATTACTCTCTCATAAATTCAAACCAAACCACAA
FD976827       <-- ..................................................
EY899214       --> ..................................................
FD989846       --> ..................................................
EX890303       --> ..................................................
FD568882       --> ..................................................
FD939474       --> GCAGCATGGATCTCTAGACTACTCTCTCATAAA.................
EV548730       --> GCAGCATGGTTCTCTAGATTACTCTCTCATAAAT................
FD986327       --> ..................................................
EV567454       --> GCAGCATGGTTCTCTAGATTACTCTCTCATAAATTCAAACCAAACCACAA
EY929856       --> ..................................................
FD564532       --> ..................................................
EY923591       --> ..................................................
EY924240       --> GC................................................
EY941547       --> ..................................................
FD981035       --> ..................................................
FD949732       --> GCAGCATGGATCTCTAGACTACTCTCTCATAAATTCAAACCAAACCACAt
EW726203       --> ..................................................
FD544129       --> ..................................................
FD963359       --> GCAGCATGGTTCTCTAGATTACTCTCTCATAAATTCAAACCAAACCACAA
FD971843       --> GCAGCATGGATCTCTAGATTACTCTCTCATAAATTCAAACCAAACCACAA
FD989916       --> GCAGCATGGTTCTCTAGATTACTCTCTCATAAATTCAAACCAAACCACAA

               901    -    951
UN16336        --> TTCTTAGCTCTAAAGATCAGACATCATCGAGCTGGGAAATTCACTCACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983027       <-- TTCTTAGCTCTAAAGATCAGACATCATCGAGCCGGGAAATTCACTCACAA
EV572391       <-- TTTTTAGCTCTAAAGATCAGACATCATCGAGCTGGGAAATTCACTCACAC
FD985469       <-- TTTTTAGCTCTAAAGATCAGACATCATCGAGCTGGGAAATTCACTCACAA
FD985579       <-- TTCTTAGCTCTAAAGATCAGACATCATCGAGCTGGGAAATTCACTCACAA
FD985634       <-- TTCTTAGCTCTAAAGATCAGACATCATCGAGCTGGGAAATTCACTCACAA
FD982598       <-- TTCTTAGCTCTAAAGATCAGACATCATCGAGCTGGGAAATTCACTCACAA
FD976827       <-- ...........AAAGATCAGACATCATCGAGCTGGGAAATTCACTCACAA
EY899214       --> ..................................................
FD989846       --> ..................................................
EX890303       --> ..................................................
FD568882       --> ..................................................
FD939474       --> ..................................................
EV548730       --> ..................................................
FD986327       --> ..................................................
EV567454       --> TTCTTAGCTCTAAAGATCAGACATCATCGAGCTGGGAAATTCACTCACAC
EY929856       --> ..................................................
FD564532       --> ..................................................
EY923591       --> ..................................................
EY924240       --> ..................................................
EY941547       --> ..................................................
FD981035       --> ..................................................
FD949732       --> ..................................................
EW726203       --> ..................................................
FD544129       --> ..................................................
FD963359       --> TTCTTAGCTCTAAAGATCAGACATCATCGAGCTGGGAAATTCACTCACA-
FD971843       --> TTC...............................................
FD989916       --> TTCTTAGCTCTAAAGATCAGACATCATCGAGCTGGGAAATTCACTCACAA

               951    -   1001
UN16336        --> TGTCTTTACAACAACTTGAGAACCGATTCAGTTTCAAGTTTCTTCAGCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983027       <-- TGTCTTTACAACAACTTGAGAACCGATTCAGTTTCAAGTTTCTTCAGCCT
EV572391       <-- TGTCTTTACAACAACTTGAGAACCGATTCAGTTTCAAGTTTCTTCAGCCT
FD985469       <-- TGTCTTTACAACAACTTGAGAACCGATTCAGTTTCAAGTTTCTTCAGCCT
FD985579       <-- TGTCTTTACAACAACTTGAGAACCGATTCAGTTTCAAGTTTCTTCAGCCT
FD985634       <-- TGTCTTTACAACAACTTGAGAACCGATTCAGTTTCAAGTTTCTTCAGCCT
FD982598       <-- TGTCTTTACAACAACTTGAGAACCGATTCAGTTTCAAGTTTCTTCAGCCT
FD976827       <-- TGTCTTTACAACAACTTGAGAACCGATTCAGTTTCAAGTTTTTTCAGCCT
EY899214       --> ..................................................
FD989846       --> ..................................................
EX890303       --> ..................................................
FD568882       --> ..................................................
FD939474       --> ..................................................
EV548730       --> ..................................................
FD986327       --> ..................................................
EV567454       --> TGTCTTTACAcactgagaacc.............................
EY929856       --> ..................................................
FD564532       --> ..................................................
EY923591       --> ..................................................
EY924240       --> ..................................................
EY941547       --> ..................................................
FD981035       --> ..................................................
FD949732       --> ..................................................
EW726203       --> ..................................................
FD544129       --> ..................................................
FD963359       --> TGTCTTTACA-C-ACTTGAGA-CCGATTCAGTTTCA-GTTTCTTCAGC-T
FD971843       --> ..................................................
FD989916       --> TGTCTTTACAACAACTTGAGAACCGATTCAGTTTCAAGTTTCTTCAGCCT

               1001   -   1051
UN16336        --> CAAGTAAAAAAAAACTCTGGATAGGGCTTACTGAAAAATCTGTCTTATCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983027       <-- CAAGTAAAAAAGAACTCTGGATAGGGCTTACTGAAAAATCTGTCTTATCC
EV572391       <-- CAAGTAAAAAAAAACTCTGGATAGGGCTTACTGAAAAATCTGTCTTATCC
FD985469       <-- CAAGTAAAAAAAAACTCTGGATAGGGCTTACTGAAAAATCTGTCTTATCC
FD985579       <-- CAAGTAAAAAAAAACTCTGGATAGGGCTTACTGAAAAATCTGTCTTATCC
FD985634       <-- CAAGTAAAAAAAAACTCTGGATAGGGCTTACTGAAAAATCTGTCTTATCC
FD982598       <-- CAAGTAAAAAAAA-CTCTGGATAGGGCTTACTGAAAAATCTGTCTTATCC
FD976827       <-- CAAGTAAAAAAAAACTCTGGATAGGGCTTACTGAAAAA............
EY899214       --> ..................................................
FD989846       --> ..................................................
EX890303       --> ..................................................
FD568882       --> ..................................................
FD939474       --> ..................................................
EV548730       --> ..................................................
FD986327       --> ..................................................
EV567454       --> ..................................................
EY929856       --> ..................................................
FD564532       --> ..................................................
EY923591       --> ..................................................
EY924240       --> ..................................................
EY941547       --> ..................................................
FD981035       --> ..................................................
FD949732       --> ..................................................
EW726203       --> ..................................................
FD544129       --> ..................................................
FD963359       --> C-AGTAAAAAAAA.....................................
FD971843       --> ..................................................
FD989916       --> CAAGTAAAAAAAAACTCTGGATAGGGCTTACTGAAAAATCTGTCTTATCC

               1051   -   1101
UN16336        --> ATGTTATCTTTAAATTTGAACCAGAAAGACAGAGGAAACCAATCCAAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983027       <-- ATTTTATCTTTAAATTTGAACCAGAAAGACAGAGGAAACCAATCCAAAGA
EV572391       <-- ATGTTATCTTTAAATTTGAACCAGAAAGACAGAGGAAACCAATCCAAAGA
FD985469       <-- ATGTTATCTTTAAATTTGAACCAGAAAGACAGAGGAAACCAATCCAAAGA
FD985579       <-- ATGTTATCTTTAAATTTGAACCAGAAAGACAGAGGAAACCAATCCAAAGA
FD985634       <-- ATGTTATCTTTAAATTTGAACCAGAAAGACAGAGGAAACCAATCCAAAGA
FD982598       <-- ATGTTATCTTTAAATTTGAACCAGAAAGACAGAGGAAACCAATCCAAAGA
FD976827       <-- ..................................................
EY899214       --> ..................................................
FD989846       --> ..................................................
EX890303       --> ..................................................
FD568882       --> ..................................................
FD939474       --> ..................................................
EV548730       --> ..................................................
FD986327       --> ..................................................
EV567454       --> ..................................................
EY929856       --> ..................................................
FD564532       --> ..................................................
EY923591       --> ..................................................
EY924240       --> ..................................................
EY941547       --> ..................................................
FD981035       --> ..................................................
FD949732       --> ..................................................
EW726203       --> ..................................................
FD544129       --> ..................................................
FD963359       --> ..................................................
FD971843       --> ..................................................
FD989916       --> ATGTTATCTTTAAATTTGAACCAGAAAGACAGAGGAAACCAATCCAAAGA

               1101   -   1151
UN16336        --> TCTTTCAACCTCTTGTGGTCAAAAAAACTTATTGTTGTACATTTGTAGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983027       <-- TCTTTCAACCTCTTGTGGTCAAAAAAACTTATTGTTGTACATTTGTAGTA
EV572391       <-- TCCTTCAACCTCTTGTGGTCAAAAAAACTTATTGTTGTACATTTGTAGTA
FD985469       <-- TCTTTCAACCTCTTGTGGTCAAAAAAACTTATTGTTGTACATTTGTAGTA
FD985579       <-- TCTTTCAACCTCTTGTGGTCAAAAAAACTTATTGTTGTACATTCGTAGTA
FD985634       <-- TCTTTCAACCTCTTGTGGTCAAAAAAACTTATTGTTGTACATTTGTAGTA
FD982598       <-- TCTTTCAACCTCTTGTGGTCAAAAAAACTTATTGTTGTACATTTGTAGTA
FD976827       <-- ..................................................
EY899214       --> ..................................................
FD989846       --> ..................................................
EX890303       --> ..................................................
FD568882       --> ..................................................
FD939474       --> ..................................................
EV548730       --> ..................................................
FD986327       --> ..................................................
EV567454       --> ..................................................
EY929856       --> ..................................................
FD564532       --> ..................................................
EY923591       --> ..................................................
EY924240       --> ..................................................
EY941547       --> ..................................................
FD981035       --> ..................................................
FD949732       --> ..................................................
EW726203       --> ..................................................
FD544129       --> ..................................................
FD963359       --> ..................................................
FD971843       --> ..................................................
FD989916       --> TCTTTCAACCTCTTGTGGT...............................

               1151   -   1201
UN16336        --> TACATATCATATCTCCAAAATACAATCTCACTTGTTATTATTTGATTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983027       <-- TACATATCATATCTCC.................................
EV572391       <-- TACATATCATATCTCCAAAATACAATCTCACTTGTTATTATTTG.....
FD985469       <-- TACATATCATATCTCCAAAATACAATCTCACTTGTTATTATTTGATTAC
FD985579       <-- TACATATCATATCTCCAAAATACAATCTCACTTGTTATT..........
FD985634       <-- TACATATCATATCTCCAAAATACAATCTCACTTGTTATTATTTGATTAC
FD982598       <-- TACATATCATATCTCCAAAATgc..........................
FD976827       <-- .................................................
EY899214       --> .................................................
FD989846       --> .................................................
EX890303       --> .................................................
FD568882       --> .................................................
FD939474       --> .................................................
EV548730       --> .................................................
FD986327       --> .................................................
EV567454       --> .................................................
EY929856       --> .................................................
FD564532       --> .................................................
EY923591       --> .................................................
EY924240       --> .................................................
EY941547       --> .................................................
FD981035       --> .................................................
FD949732       --> .................................................
EW726203       --> .................................................
FD544129       --> .................................................
FD963359       --> .................................................
FD971843       --> .................................................
FD989916       --> .................................................