1      -     51
UN16408        --> GGGGACTCATTTGTCTCTCTTCTTCCCCCTCCGCGCCGCGCTCTC-GTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532547       <-- ..........................CCCTCCGCGCCGCGCTCTC-GTTT  Raphanus raphanistrum subsp. maritimus
EX759971       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537567       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY903684       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX761396       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX748750       --> GGGGACTCATTTGTCTCTCTTCTTCCCCCTCCGCGCCGCGCTCTC-GTTT  Raphanus raphanistrum subsp. maritimus
EV528601       --> .GGGACTCATTTGTCTCTCTTCTTCCCCCTCCGCGCCGCGCTCTC-GTTT  Raphanus raphanistrum subsp. maritimus
EY907854       --> .GGGACTCATTTGTCTCTCTTCTACCCCCTCCGCGCCGCGCTCTCTGTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541242       --> .GGGACTCATTTGTCTCTCTTCTACCCCCTCCGCGCCGCGCTCTCTGTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV548683       --> .................................gggCGCGCTCT--ATCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX756099       --> ...............................................tcT  Raphanus raphanistrum subsp. raphanistrum (MS)

               51     -    101
UN16408        --> CACTTCCTCTCAAAGAGAAATGGCTGAATCCAAGGTGGTGGTTCCAGAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532547       <-- CACTTCCTCTCAAAGAGAAATGGCTGAATCCAAGGTGGTGGTTCCAGAGT  Raphanus raphanistrum subsp. maritimus
EX759971       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537567       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY903684       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX761396       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX748750       --> CACTTCCTCTCAAAGAGAAATGGCTGAATCCAAGGTGGTGGTTCCAGAGT  Raphanus raphanistrum subsp. maritimus
EV528601       --> CACTTCCTCTCAAAGAGAAATGGCTGAATCCAAGGTGGTGGTTCCAGAGT  Raphanus raphanistrum subsp. maritimus
EY907854       --> CACTTCCACTCAAAGAGAAATGGCTGAATCCAAGGTGGTGGTTCCAGAGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541242       --> CACTTCCACTCAAAGAGAAATGGCTGAATCCAAGGTGGTGGTTCCAGAGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV548683       --> CACTTCCTCTCAAAGAGAAATGGCTGAATCCAAGGTGGTGGTTCCAGAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX756099       --> CACTTCCACTCAAAGAGAA-TGGCTGAATCCAAGGCGGTGGTTCCAGAGT  Raphanus raphanistrum subsp. raphanistrum (MS)

               101    -    151
UN16408        --> CTGTGCTAAAGAAGATCAAGAGGGAAGAGGAATGGGCATTGACCAAGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532547       <-- CTGTGCTAAAGAAGATCAAGAGGGAAGAGGAATGGGCATTGACCAAGAAA
EX759971       <-- ..................................................
FD537567       <-- ..................................................
EY903684       <-- ..................................................
EX761396       <-- ..................................................
EX748750       --> CTGTGCTAAAGAAGATCAAGAGGGAAGAGGAATGGGCATTGACCAAGAAA
EV528601       --> CTGTGCTAAAGAAGATCAAGAGGGAAGAGGAATGGGCATTGACCAAGAAA
EY907854       --> CTGTGCTAAAGAAGATCAAGAGGGGAGAGGAATGGGCATTGACCAAGAAA
FD541242       --> CTGTGCTAAAGAAGATCAAGAGGGAAGAGGAATGGGCATTGACCAAGAAA
EV548683       --> CTGCGCTAAAGAAGATCAAGAGGGAGGAGGAATGGGCATTGGCTAAGAAA
EX756099       --> CTGTGCTAAAGAAGATCAGGAGGGAAGAGGAATGGGCATTGACCAAGAAA

               151    -    201
UN16408        --> CAGGAAGCTGCAGCTGCTAAGAAGAAGAGTGTTGAGACCAGGAAGCTTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532547       <-- CAGGAAGCTGCAGCTGCTAAGAAGAAGAGTGTTGAGACCAGGAAGCTTAT
EX759971       <-- ........TGCAGCTGCTAAGAAGAAGAGTGT-GAGACCAGGAAGCTTAT
FD537567       <-- ..................................................
EY903684       <-- ..................................................
EX761396       <-- ..................................................
EX748750       --> CAGGAAGCTGCAGCTGCTAAGAAGAAGAGTGTTGAGACCAGGAAGCTTAT
EV528601       --> CAGGAAGCTGCAGCTGCTAAGAAGAAGAGTGTTGAGACCAGGAAGCTTAT
EY907854       --> CAGGAAGCTGCAGCTGCTAAGAAGAAGAGTGTTGAGACCAGGAAGCTTAT
FD541242       --> CAGGAAGCTGCAGCTGCTAAGAAGAAGAGTGTTGAGACCAGGAAGCTTAT
EV548683       --> CAGGAAGCTGCAGCTGCTAAGAAGAAGAGTGTTGAGACCAGGAAGCTTAT
EX756099       --> CAGGAAGCTGCAGCTGCTAAGAAGAAGAGTGTTGAGACCAGGAAGCTTAT

               201    -    251
UN16408        --> CTTCAAAAGAGCTGAGCAATATGCTAAAGAATACGCCGAGCAGGATAACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532547       <-- CTTCAAAAGAGCTGAGCAATATGCTAAAGAATATGCCGAGCAGGATAACG
EX759971       <-- CTTCAAAAGAGCTGAGCAATATGCTAAAGAATACGCCGAGCGGGATAACG
FD537567       <-- ........GAGCTGAGCAATATGCTAAAGAATACGCCGAGCAGGATAACG
EY903684       <-- ..................................................
EX761396       <-- ..................................................
EX748750       --> CTTCAAAATAGCTGAGCAATATGCTAAAGAATATGCCGAGCAGGATAACG
EV528601       --> CTTCAAAAGAGCTGAGCAATATGCTAAAGAATATGCCGAGCAGGATAACG
EY907854       --> CTTCAAAAGAGCTGAGCAATATGCTAAAGAATACGCCGAGCAGGATAACG
FD541242       --> CTTCAAAAGAGCTGAGCAATATGCTAAAGAATACGCCGAGCAGGATAACG
EV548683       --> CTTCAAAAGAGCTGAGCAATATGCTAAAGAATACGCCGAGAAGGACAATG
EX756099       --> CTTCAAAAGAGCTGAGCAATATGCTAAAGAATACGCCGAGCGGGATAACG

               251    -    301
UN16408        --> AGTTGATCCGTTTGAAGCGTGAGGCTAAGTTGAAAGGAGGGTTCTATGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532547       <-- AGTTGATCCGTTTGAAGCGTGAGGCTAAGTTGAAAGGAGGGTTCTATGTT
EX759971       <-- AGTTGATCCGTTTGAAGCGTGAGGCTAAGTTGAAAGGAGGGTTCTATGTT
FD537567       <-- AGTTGATCCGTTTGAAGCGTGAGGCTAAGTTGAAAGGAGGGTTTTATGTT
EY903684       <-- ................GCGTGAGGCTAAGTTGAAAGGAGGGTTCTATGTT
EX761396       <-- ..................................................
EX748750       --> AGTTGATCCGTTTGAAGCGTGAGGCTAAGTTGAAAGGAGGGTTCTATGTT
EV528601       --> AGTTGATCCGTTTGAAGCGTGAGGCTAAGTTGAAAGGAGGGTTCTATGTT
EY907854       --> AGTTGATCCGTTTGAAGCGTGAGGCTAAGTTGAAAGGAGGGTTCTATGTT
FD541242       --> AGTTGATCCGTTTGAAGCGTGAGGCTAAGTTGAAAGGAGGGTTTTATGTT
EV548683       --> AGTTGATCCGTTTGAAGCGTGAGGCCAAGTTGAAAGGAGGGTTCTATGTT
EX756099       --> AGTTGATCCGTTTGAAGCGTGAGGCTAAGTTGAAAGGAGGGTTCTATGTT

               301    -    351
UN16408        --> GACCCTGAGGCTAAATTGCTCTTTATCATTCGTATCCGTGGAATCAACGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532547       <-- GACCCTGAGGCTAAATTGCTCTTTATCATTCGTATCCGTGGAATCAACGC
EX759971       <-- GACCCTGAGGCTAAATTGCTCTTTATCATTCGTATCCGTGGAATCAACGC
FD537567       <-- GACCCTGAGGCTAAATTGCTCTTTATCATTCGTATCCGTGGAATCAACGC
EY903684       <-- GACCCTGAGGCTAAATTGCTCTTTATCATTCGTATCCGTGGAATCAACGC
EX761396       <-- ..................................................
EX748750       --> GACCCTGAGGCTAAATTGCTCTTTATCATTCGTATCCGTGGAATCAACGC
EV528601       --> GACCCTGAGGCTAAATTGCTCTTTATCATTCGTATCCGTGGAATCAACGC
EY907854       --> GACCCTGAGGCTAAATTGCTCTTTATCATTCGTATCCGTGGAATCAACGC
FD541242       --> GACCCTGAGGCTAAATTGCTCTTTATCATTCGTATCCGTGGAATCAACGC
EV548683       --> GACCCTGAGGCTAAATTGCTCTTTATCATTCGTATCCGTGGAATCAACGC
EX756099       --> GACCCTGAGGCTAAATTGCTCTTTATCATTCGTATCCGTGGAATCAACGC

               351    -    401
UN16408        --> TATTGACCCAAAAACCAAGAAGATTCTGCAGCTCTTGCGTTTAAGACAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532547       <-- TATTGACCCAAAAACCAAGAAGATTCTGCAGCTCTTGCGTTTAAGACAAA
EX759971       <-- TATTGACCCAAAAACCAAGAAGATTCTGCAGCTCTTGCGTTTAAGACAAA
FD537567       <-- TATTGACCCAAAAACCAAGAAGATTCTGCAGCTCTTGCGTTTAAGACAAA
EY903684       <-- TATTGACCCAAAAACCAAGAAGATTCTGCAGCTCTTGCGTTTAAGACAAA
EX761396       <-- ..................................................
EX748750       --> TATTGACCCAAAAACCAAGAAGATTCTGCAGCTCTTGCGTTTAAGACAAA
EV528601       --> TATTGACCCAAAAACCAAGAAGATTCTGCAGCTCTTGCGTTTAAGACAAA
EY907854       --> TATTGACCCAAAAACCAAGAAGATTCTGCAGCTCTTGCGTTTAAGACAAA
FD541242       --> TATTGACCCAAAAACCAAGAAGATTCTGCAGCTCTTGCGTTTAAGACAAA
EV548683       --> TATTGACCCAAAAACCAAGAAGATTCTTCAGCTCTTGCGTTTAAGACAAA
EX756099       --> TATTGACCCAAAAACCAAGAAGATTCTGCAGCTCTTGCGTTTAAGACAAA

               401    -    451
UN16408        --> TCTTCAATGGTGTGTTCCTTAAGGTGAACAAGGCAACAATCAACATGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532547       <-- TCTTCAATGGTGTGTTCCTTAAGGTGAACAAGGCAACAATCAACATGTTG
EX759971       <-- TCTTCAATGGTGTGTTCCTTAAGGTGAACAAGGCAACAATCAACATGTTG
FD537567       <-- TCTTCAATGGTGTGTTCCTTAAGGTGAACAAGGCAACAATCAACATGTTG
EY903684       <-- TCTTCAATGGTGTGTTCCTTAAGGTGAACAAGGCAACAATCAACATGTTG
EX761396       <-- ..................................................
EX748750       --> TCTTCAATGGTGTGTTCCTTAAGGTGAACAAGGCAACAATCAACATGTTG
EV528601       --> TCTTCAATGGTGTGTTCCTTAAGGTGAACAAGGCAACAATCAACATGTTG
EY907854       --> TCTTCAATGGTGTGTTCCTTAAGGTGAACAAGGCAACAATCAACATGTTG
FD541242       --> TCTTCAATGGTGTGTTCCTTAAGGTGAACAAGGCAACAATCAACATGTTG
EV548683       --> TCTTCAATGGTGTGTTCCTTAAGGTGAACAAGGCAACAATCAACATGTTG
EX756099       --> TCTTCAATGGTGTGTTCCTTAAGGTGAACAAGGCAACAATCAACATGTTG

               451    -    501
UN16408        --> CGTCGTGTTGAGCCTTACGTGACTTACGGATACCCAAACTTGAAGAGTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532547       <-- CGTCGTGTTGAGCCTTACGTGACTTACGGATACCCAAACTTGAAGAGTGT
EX759971       <-- CGTCGTGTTGAGCCTTACGTGACTTACGGATACCCAAACTTGAAGAGTGT
FD537567       <-- CGTCGTGTTGAGCCTTACGTGACTTACGGATACCCAAACTTGAAGAGTGT
EY903684       <-- CGTCGTGTTGAGCCTTACGTGACTTACGGATACCCAAACTTGAAGAGTGT
EX761396       <-- ..................................................
EX748750       --> CGTCGTGTTGAGCCTTACGTGACTTACGGATACCCAAACTTGAAGAGTGT
EV528601       --> CGTCGTGTTGAGCCTTACGTGACTTACGGATACCCAAACTTGAAGAGTGT
EY907854       --> CGTCGTGTTGAGCCTTACGTGACTTACGGATACCCAAACTTGAAGAGTGT
FD541242       --> CGTCGTGTTGAGCCTTACGTGACTTACGGATACCCAAACTTGAAGAGTGT
EV548683       --> CGTCGTGTTGAACCTTACGTGACTTACGGGTACCCAAACTTGAAGAGTGT
EX756099       --> CGTCGTGTTGAGCCTTACGTGACTTACGGATACCCAAACTTGAAGAGTGT

               501    -    551
UN16408        --> CAAAGAGCTAATCTACAAGAGGGGTTTTGGAAAGCTGAACCACCAGAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532547       <-- CAAAGAGCTAATCTACAAGAGGGGTTTTGGAAAGCTGAACCACCAGAGGA
EX759971       <-- CAAAGAGCTAATTTACAAGAGGGGTTTTGGAAAGCTGAACCACCAGAGGA
FD537567       <-- CAAAGAGCTAATCTACAAGAGGGGTTTTGGAAAGCTGAACCACCAGAGGA
EY903684       <-- CAAAGAGCTAATCTACAAGAGGGGTTTTGGAAAGCTGAACCACCAGAGGA
EX761396       <-- ..................................................
EX748750       --> CAAAGAGCTAATCTACAATAGGGGTTTTGGAAAGCTGAACCACCAGAGGA
EV528601       --> CAAAGAGCTAATCTACAAGAGGGGTTTTGGAAAGCTGAACCACCAGAGGA
EY907854       --> CAAAGAGCTAATCTACAAGAGGGGTTTTGGAAAGCTGAACCACCAGAGGA
FD541242       --> CAAAGAGCTAATCTACAAGAGGGGTTTTGGAAAGCTGAACCACCAGAGGA
EV548683       --> TGAGGAGCTAGTCTACAAGAGGGGTTTTGGAAAGCTGAACCACCAGAGGA
EX756099       --> CAAAGAGCTAATCTACAAGAGGGGTTTTGGAAAGCTGAACCACCAGAGGA

               551    -    601
UN16408        --> TAGCACTCACTGACAACTCCATAGTGAATGAAGCTCTAGGAAAGCACAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532547       <-- TAGCACTCACTGACAACTCCATAGTGAATGAAGCTCTAGGAAAGCACAAC
EX759971       <-- TAGCACTCATTGACAACTCCATAGTGAATGAAGCTCTAGGAAAGCACAAC
FD537567       <-- TAGCACTCACTGACAACTCCATAGTGAATGAAGCTCTAGGAAAGCACAAC
EY903684       <-- TAGCACTCACTGACAACTCCATAGTGAATGAAGCTCTAGGAAAGCACAAC
EX761396       <-- ..................................................
EX748750       --> TAGCACTCACTGACAACTCCATAGTGAATGAAGCTCTAGGAAAGCACAAC
EV528601       --> TAGCACTCACTGACAACTCCATAGTGAATGAAGCTCTAGGAAAGCACAAC
EY907854       --> TAGCACTCACTGACAACTCCATAGTGAATGAAGCTCTAGGAAAGCACAAC
FD541242       --> TAGCACTCACTGACAACTCCATAGTGAATGAAGCTCTAGGAAAGCACAAC
EV548683       --> TAGCACTCACTGACAACTCCATAGTGAATGAAGCTCTAGGAAAGCACAAC
EX756099       --> TAGCACTCATTGACAACTCCATAGTGAATGAAGCTCTAGGAAAGCACAAC

               601    -    651
UN16408        --> ATCATCTGCGTTGAGGATCTGATCCACGAGATCATGACCGTTGGACCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532547       <-- ATCATCTGCGTTGAGGATCTGATCCACGAGATCATGACCGTTGGACCTCA
EX759971       <-- ATCATCTGCGTTGAGGATCTGATCCACGAGATCATGACCGTTGGACCTCA
FD537567       <-- ATCATCTGCGTTTAGGATCTGATCCACGAGATCATGACCGTTGGACCTCA
EY903684       <-- ATCATCTGCGTTGAGGATCTGATCCACGAGATCATGACCGTTGGACCTCA
EX761396       <-- ...............GATTTGATCCACGAGATCATGACCGTTGGACCTCA
EX748750       --> ATCATCTGCGTTGAGGATCTGATCCACGAGATCATGACCGTTGGACCTCA
EV528601       --> ATCATCTGCGTTGAGGATCTGATCCACGAGATCATGACCGTTGGACCTCA
EY907854       --> ATCATCTGCGTTGAGGATCTGATCCACGAGATCATGACCGTTGGACCTCA
FD541242       --> ATCATCTGCGTTTAGGATCTGATCCACGAGATCATGACCGTTGGACCTCA
EV548683       --> ATCATCTGCGTCGAGGATCTGATCCACGAGATCATGACCGTTGGACCTCA
EX756099       --> ATCATCTGCGTTGAGGATCTGATCCACGAGATCATGACCGTTGGACCTCA

               651    -    701
UN16408        --> CTTCAAGGAAGCCAACAACTTCCTCTGGCCATTCCAGTTGAAGGCACCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532547       <-- CTTCAAAGAAGCCAACAACTTCCTTTGGCCATTCCAGTTGAAGGCACCAC  Raphanus raphanistrum subsp. maritimus
EX759971       <-- CTTCAAGGAAGCCAACAACTTCCTCTGGCCATTCCAGTTGAAGGCACCAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537567       <-- CTTCAAGGAAGCCAACAACTTCCTCTGGCCATTCCAGTTGAAGGCACCAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY903684       <-- CTTCAAGGAAGCCAACAACTTCCTCTGGCCATTCCAGTTGAAGGCACCAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX761396       <-- CTTCAAGGAAGCCAACAACTTCCTCTGGCCATTCCAGTTGAAGGCACCAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX748750       --> CTTCAAAGAAGCCAACAACTTCCTTTGGCCATTCCAGTTGAAG-CACCAC  Raphanus raphanistrum subsp. maritimus
EV528601       --> CTTCAAAGAAGCCAACAACTTCCTTTGGCCATTCCAGTTG..........  Raphanus raphanistrum subsp. maritimus
EY907854       --> CTT...............................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541242       --> CTTCAAGGAAGCCAACAACTTCCTCTGGCCATTCCAGTTGAAG-CACCAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV548683       --> CTTCAAGGAAGCCAACAACTTCCTTTGGCCGTTCCAGTTGAAGGCACCAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX756099       --> CTTCAAGGAAGCCAACAACTTCCTCTGGCCATTCCAGTTGAAG-CACCAC  Raphanus raphanistrum subsp. raphanistrum (MS)

               701    -    751
UN16408        --> TCGGTGGCCTTAAGAAGAAGAGGAACCACTACGTTGAAGGTGGTGATGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532547       <-- TCGGTGGCCTTAAGAAGAAGAGAAACCACTACGTTGAAGGTGGTGATGCT  Raphanus raphanistrum subsp. maritimus
EX759971       <-- TCGGTGGCCTTAAGAAGAAGAGGAACCACTACGTTGAAGGTGGTGATGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537567       <-- TCGGTGGCCTTAAGAAGAAGAGGAACCACTACGTTGAAGGTGGTGATGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY903684       <-- TCGGTGGCCTTAAGAAGAAGAGGAACCACTACGTTGAAGGTGGTGATGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX761396       <-- TCGGTGGCCTTAAGAAGAAGAGGAACCACTACGTTGAAGGTGGTGATGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX748750       --> TCG-TGGCCTTA-GAAGA-GAGAAACC.......................  Raphanus raphanistrum subsp. maritimus
EV528601       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY907854       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541242       --> TCGGTGGCCTTAAGAAGAAGAGGAACCACTACGTTGAAG-TGGTGATGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV548683       --> TCGGTGGCCTTAAGAAGAAGAGAAACCACTACGTCGAAAGTGGTGATGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX756099       --> TCGGTGGCCTTAAGAAGAAGAG-AACCACTACGTTGAAG-TGGTGATGCT  Raphanus raphanistrum subsp. raphanistrum (MS)

               751    -    801
UN16408        --> GGAAACAGAGAGAATTTCATCAACGAGCTTGTCAGGAGGATGAACTGATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532547       <-- GGAAACAGAGAGAATTTCATCAACGAGCTTGTCAGGAGGATGAACTGATG
EX759971       <-- GGAAACAGAGAGAATTTC................................
FD537567       <-- GGAAACAGAGAGAATTTCATCAACGAGCTTGTCAGGAGGATGAACTGATG
EY903684       <-- GGAAACAGAGAGAATTTCATCAACGAGCTTGTCAGGAGGATGAACTGATG
EX761396       <-- GGAAACAGAGAGAATTTCATCAACGAGCTTGTCAGGAGGATGAACTGATG
EX748750       --> ..................................................
EV528601       --> ..................................................
EY907854       --> ..................................................
FD541242       --> G.................................................
EV548683       --> GGAAACAGAGAGAATTTCATCAACGAGCTTG...................
EX756099       --> GGAA-CAGAGAGA.....................................

               801    -    851
UN16408        --> AATGCCTCCATTCTTTTATCTTCCCCATTTCATAGTTTTTTTTTGTTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532547       <-- AATGCCTCCCTTCTTTT-TCTTCTCCATTTCGTAGCTTTT--TGGTTTGG
EX759971       <-- ..................................................
FD537567       <-- AATGCCTCCATTCTTTTATCTTCCCCATTTCATAGTTTTTTTTTGTTTGG
EY903684       <-- AATGCCTCCATTCTTTTATCTTCCCCATCTCATAGTTTTTTTT-GTTTGG
EX761396       <-- AATGCCTCCATTCTTTTATCTTCCCCATTTCATAGTTTTTTTTTGTTTGG
EX748750       --> ..................................................
EV528601       --> ..................................................
EY907854       --> ..................................................
FD541242       --> ..................................................
EV548683       --> ..................................................
EX756099       --> ..................................................

               851    -    901
UN16408        --> ATCTGAGCGTTTTGTTTTGACCGTGTAATCTTAGTCGAATATAGGCTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532547       <-- ATCTGAGCGTTTTGTTTTGACCGTGTGATCTTAGTCGAGCATAGGCTTTG
EX759971       <-- ..................................................
FD537567       <-- ATCTGAGCGTTTTGTTTTGACCGTGTAATCTTAGTCGAATATAGGCTTTG
EY903684       <-- ATCTGAGCGTTTTGTTTTGACCGTGTAATCTTAGTCGAATATAGGCTTTG
EX761396       <-- ATCTGAGCGTTTTGTTTTGACCGTGTAA......................
EX748750       --> ..................................................
EV528601       --> ..................................................
EY907854       --> ..................................................
FD541242       --> ..................................................
EV548683       --> ..................................................
EX756099       --> ..................................................

               901    -    951
UN16408        --> ATTAATAAACTTTGTTTTGTTTTCTATAATCCA-TGTTGATCACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532547       <-- ATTAATAAACTTTGTTTTGCTTTCTATAATCCAATGTTGATCAC..
EX759971       <-- ..............................................
FD537567       <-- ATTAATAAACTTTGTTTTGTTTTCTATAATCCA-TGTTGATCACAT
EY903684       <-- ATTAATAAAC....................................
EX761396       <-- ..............................................
EX748750       --> ..............................................
EV528601       --> ..............................................
EY907854       --> ..............................................
FD541242       --> ..............................................
EV548683       --> ..............................................
EX756099       --> ..............................................