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Alignment for radish unigene UN16415

               1      -     51
UN16415        --> GGACCAACTTAAAATTCTTTCTCCCCATTCGTTATCCAAACCGCATCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532253       <-- ..................................................
EW718232       --> GGACCAACTTAAAATTCTTTCTCCCCATTCGTTATCCAAACCGCATCTCT
EV524614       --> ..................................................
EY915675       --> ..................................................
FD990287       --> ..................................................
FD569738       --> ..................................................
EW735583       --> ..................................................
EX764316       --> ..................................................
FD570970       --> ..................................................
EV537984       --> ..................................................
EV528197       --> ..................................................

               51     -    101
UN16415        --> TCCCACAACTATGGAAACTAATTATTCTCCATTAGGGTTTCTAATTTCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532253       <-- ..................................................
EW718232       --> TCCCACAACTATGGAAACTAATTATTCTCCATTAGGGTTTCTAATTTCAC
EV524614       --> ..................................................
EY915675       --> ..................................................
FD990287       --> ..................................................
FD569738       --> ..................................................
EW735583       --> ..................................................
EX764316       --> ..................................................
FD570970       --> ..................................................
EV537984       --> ..................................................
EV528197       --> ..................................................

               101    -    151
UN16415        --> TCTTCATCGTTGTTACTTTTCTTGCACCACAAGTCAAATCTAGGGCTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532253       <-- ..................................................
EW718232       --> TCTTCATCGTTGTTACTTTTCTTGCACCACAAGTCAAATCTAGGGCTTTC
EV524614       --> ..................................................
EY915675       --> ..................................................
FD990287       --> ..................................................
FD569738       --> ..................................................
EW735583       --> ..................................................
EX764316       --> ..................................................
FD570970       --> ..................................................
EV537984       --> ..................................................
EV528197       --> ..................................................

               151    -    201
UN16415        --> TACGTATTTGGTGACTCTCTCGTCGACAATGGAAACAACGATTACTTAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532253       <-- ..................................................
EW718232       --> TACGTATTTGGTGACTCTCTCGTCGACAATGGAAACAACGATTACTTAGT
EV524614       --> ..................................................
EY915675       --> ..................................................
FD990287       --> ..................................................
FD569738       --> ..................................................
EW735583       --> ..................................................
EX764316       --> ..................................................
FD570970       --> ..................................................
EV537984       --> ..................................................
EV528197       --> ..................................................

               201    -    251
UN16415        --> CACCACTGCTCGTGCCGACAACTACCCATATGGTATCGATTACCCGACCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532253       <-- ..................................................
EW718232       --> CACCACTGCTCGTGCCGACAACTACCCATATGGTATCGATTACCCGACCC
EV524614       --> ..................................................
EY915675       --> ..................................................
FD990287       --> ..................................................
FD569738       --> ..................................................
EW735583       --> ..................................................
EX764316       --> ..................................................
FD570970       --> ..................................................
EV537984       --> ..................................................
EV528197       --> ..................................................

               251    -    301
UN16415        --> GTCGACCCACCGGACGTTTCTCAAATGGCCTCAACATCCCCGACATTATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532253       <-- ..................................................
EW718232       --> GTCGACCCACCGGACGTTTCTCAAATGGCCTCAACATCCCCGACATTATC
EV524614       --> ..................................................
EY915675       --> ..................................................
FD990287       --> ..................................................
FD569738       --> ..................................................
EW735583       --> ..................................................
EX764316       --> ..................................................
FD570970       --> ..................................................
EV537984       --> ..................................................
EV528197       --> ..................................................

               301    -    351
UN16415        --> AGTGAGGCTATAGGCATGCCGTCGACTCTGCGTTGATACCACTGCTTACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532253       <-- ..................................................
EW718232       --> AGTGAGGCTATAGGCATGCCGTCGACTCTGCGTTGATACCACTGCTTACG
EV524614       --> ..................................................
EY915675       --> ..................................................
FD990287       --> ..................................................
FD569738       --> ..................................................
EW735583       --> ..................................................
EX764316       --> ..................................................
FD570970       --> ..................................................
EV537984       --> ..................................................
EV528197       --> ..................................................

               351    -    401
UN16415        --> GCCGGGGGAGAAGGCTAGAGCCAGACCCATATATGTAGATGTTACTTTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532253       <-- ..................................................
EW718232       --> GCCGGGGGAGAAGGCTAGAGCCAGACCCATATATGTAGATGTTACTTTTA
EV524614       --> ..................................................
EY915675       --> ..................................................
FD990287       --> ..................................................
FD569738       --> ..................................................
EW735583       --> ..................................................
EX764316       --> ..................................................
FD570970       --> ..................................................
EV537984       --> ..................................................
EV528197       --> ..................................................

               401    -    451
UN16415        --> TGCTCTGCCTTCTCTGGAGAGGAACTAAACTGAACTGAGTCAGAGAAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532253       <-- ..................................................
EW718232       --> TGCTCTGCCTTCTCTTCAGAGGAACTAAACTGAACTGAGTCAGAGAAACA
EV524614       --> ...............GGAGAGGAACTAAACTGAACTGAGTCAGAGAAACA
EY915675       --> ...............GGAGAGGAACTAAACTGAACTGAGTCAGAGAAACA
FD990287       --> ...............GGAGAGGAACTAAACTGAACTGAGTCAGAGAAACA
FD569738       --> ..................ggGGAACTAAACTGAACTGAGTCAGAGAAACA
EW735583       --> ........................ggAAACTGAACTGAGTCAGAGAAACA
EX764316       --> ........................ggAAACTGAACTGAGTCAGAGAAACA
FD570970       --> ....................................GAGTCAGAGAAACA
EV537984       --> ..................................................
EV528197       --> ..................................................

               451    -    501
UN16415        --> AAAGAAGGTACAACAAAGAGAGAGAGACATGGATGTTTCTTTTCTTACCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532253       <-- ..................................................
EW718232       --> AAAGAAGGTACAACAAAGAGAGAGAGACATGGATGTTTCTTTTCTTACCT
EV524614       --> AAAGAAGGTACAACAAAGAGAGAGAGACATGGATGTTTCTTTTCTTACCT
EY915675       --> AAAGAAGGTACAACAAAGAGAGAGAGACATGGATGTTCCTTTTCTTACCT
FD990287       --> AAAGAAGGTACAACAAAGAGAGAGAGACATGGATGTTTCTTTTCTTACCT
FD569738       --> AAAGAAGGTACAACAAAGAGAGAGAGACATGGATGTTTCTTTTCTTACCT
EW735583       --> AAAGAAGGTACAACAAAGAGAGAGAGACATGGATGTTTCTTTTCTTACCT
EX764316       --> AAAGAAGGTACAACAAAGAGAGAGAGACATGGATGTTTCTTTTCTTACCT
FD570970       --> AAAGAAGGTACAACAAAGAGAGAGAGACATGGATGTTTCTTTTCTTACCT
EV537984       --> .............................................ttaCT
EV528197       --> ..................................................

               501    -    551
UN16415        --> CAAGATCAATCTCTGGTGTCAAAGAGCTTGTCCCCCCATTCATCAAAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532253       <-- ..................................................
EW718232       --> CAAGATCAATCTCTGGTGTCAAAGAGCTTGTCCCCCC-TTCATCAAAACC
EV524614       --> CAAGATCAATCTCTGGTGTCAAAGAGCTTGTCCCCCCATTCATCAAAACC
EY915675       --> CAAGATCAATCTCTGGTGTCAAAGAGCTTGTCCCCCCATTCATCAAAACC
FD990287       --> CAAGATCAATCTCTGGTGTCAAAGAGCTTGTCCCCCCACTCATCAAAACC
FD569738       --> CAAGATCAATCTCTGGTGTCAAAGAGCTTGTCCCCCCATTCATCAAAACC
EW735583       --> CAAGATCAATCTCTGGTGTCAAAGAGCTTGTCCCCC-ATTCATCAAAACC
EX764316       --> CAAGATCAATCTCTGGTGTCAAAGAGCTTGTCCCCCCATTCATCAAAACC
FD570970       --> CAAGATCAATCTCTGGTGTCAAAGAGCTTGTCCCCCCATTCATCAAAACC
EV537984       --> CAAGATCAGTCTCTGGTGTCAAAGAGTTTGTCCCCCCATTCATCAAAACC
EV528197       --> ..................................................

               551    -    601
UN16415        --> AGAATCTTTTCTTGTTACCCAAGGAGAAACTCCTGCCAGTTTCTCACCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532253       <-- ..................................................
EW718232       --> AAAATCTTTTCTTGTTACCCAAGGAGAAACTCCTGCCAGTTTCTCACCAG
EV524614       --> AGAATCTTTTCTTGTTACCCAAGGAGAAACTCCTGCCAGTTTCTCACCAG
EY915675       --> AGAATCTTTTCTTGTTACCCAAGGAGAAACTCCTGCCAGTTTCTCACCAG
FD990287       --> AGAATCTTTTCTTGTTACCCAAGGAGAAACTCCTGCCAGTTTCTCA....
FD569738       --> AGAATCTTTTCTTGTTACCCAAGGAGAAACTCCTGCCAGTTTCTCACCAG
EW735583       --> AGAATCTTTTCTTGTTACCCAAGGAGAAACTCCTGCCAGTTTCTCACCAG
EX764316       --> AGAATCTTTTCTTGTTACCCAAGGAGAAACTCCTGCCAGTTTCACACCAG
FD570970       --> AGAATCTTTTCTTGTTACCCAAGGAGAAACTCCTGCCAGTTTCTCACCAG
EV537984       --> AGAATCTTTTCTCGTTACCCAAGGAGAAACTCCTGCCAGTTCCTCACCAG
EV528197       --> ..................................................

               601    -    651
UN16415        --> GAAGGTTGCTTCTCCAATCTCTGTGAATTGTTCTCTTTCGGATTCATGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532253       <-- ..................................................
EW718232       --> GAAGGTTGCTTCTCCAATCTCTGTGAATTGTTCTCTTTCGGATTCATGGA
EV524614       --> GAAGGTTGCTTCTCCAATCTCTGTGAATTGTTCTCTTTCGGATTCATGGA
EY915675       --> GAAGGTTGCTTCTCCAATCTCTGTGAATTGTTCTCTTTCGGATTCATGGA
FD990287       --> ..................................................
FD569738       --> GAAGGTTGCTTCTCCAATCTCTGTGAATTGTTCTCTTTCGGATTCATGGA
EW735583       --> GAAGGTTGCTTCTCCAATCTCTGTGAATTGTTCTCTTTCGGATTCATGGA
EX764316       --> GAAGGTTGCTTCTCCAATCTCTGTGAATTGTTCTCTTTCGGATTCATGGA
FD570970       --> GAAGGTTGCTTCTCCAATCTCTGTGAATTGTTCTCTTTCGGATTCATGGA
EV537984       --> GAAGGTTGCTTCTCCAACCTCTGTGAATTGTTCTCTTTCGGATTCATGGA
EV528197       --> ..................................................

               651    -    701
UN16415        --> AGCCACTGGAGGATGATGCTGATCTCTTCAAGGATAGTGTTAACAACAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532253       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EW718232       --> AGCCACTGGAGGATGATGCTGATCTCTT......................  Raphanus sativus var. oleiformis
EV524614       --> AGCCACTGGAGGATGATGCTGATCTCTTCAAGGACAGTGTTAACAACAGT  Raphanus raphanistrum subsp. maritimus
EY915675       --> AGCCACTGGAGGATGATGCTGATCTCTTCAAGGATAGTGTTAACAACAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD990287       --> ..................................................  Raphanus raphanistrum subsp. landra
FD569738       --> AGCCACTGGAGGACGATGCTGATCTCTTCAAGGACAGTGTTAACAACAGT  Raphanus sativus cv Early Scarlet Globe
EW735583       --> AGCCACTGGAGGATGATGCTGATCTCTTCAAGGATAGTGTTAACAACAGT  Raphanus sativus cv Rat-Tail Radish #3870
EX764316       --> AGCCACTGGAGGATGATGCTGATCTCTTCAAGGATAGTGTTAACAACAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD570970       --> AGCCACTGGAGGATGATGCTGATCTCTTCAAGGACAGTGTTAACAACAGT  Raphanus sativus cv Early Scarlet Globe
EV537984       --> AGCCACTGGAGGATGATGCTGATCTCTTCAAGGATAGTGTTAACA---GT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV528197       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               701    -    751
UN16415        --> TCTACATCAGATGCTGCTGACTGGAGAGAGTTCAGGGCAAGGCTCGTAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532253       <-- ..................................................
EW718232       --> ..................................................
EV524614       --> TCTACATCAGATGCTGCTGACTGGAGAGAGTTCAGGGCAAGGCTTGTAGC
EY915675       --> TCTACATCAGATGCTGCGGACTGGAGAGAGTTCAGGGCAAGGCTCGTAGC
FD990287       --> ..................................................
FD569738       --> TCTACATCAGATGCTGCTGACTGGAGAGAGTTCAGGGCAAGGCTCGTAGC
EW735583       --> TCTACATCAGATGCTGCGGACTGGAGAGAGTTCAGGGCAAGGCTCGTAGC
EX764316       --> TCTACATCAGATGCTGCGGACTGGAGAGAGTTCAGGGCAAGGCTCTTAGC
FD570970       --> TCTA..............................................
EV537984       --> TCTACATCAGATGCTGCTGACTGGAGAGAGTTCAGGGCAAGGCTTGTAGC
EV528197       --> ..................................................

               751    -    801
UN16415        --> TGGTGAGCAAGCTGCAACCCCTGAGAAGGACTCGTCACTATCATCATCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532253       <-- .gggGAGCAAGCTGCAACCCCTGAGAAGGACTCGTCACTATCATCATCAC
EW718232       --> ..................................................
EV524614       --> TGGGGAGCAAGCTGCAACCCCTGAGAAGGACTCGTCACTATCATCATCAC
EY915675       --> TGGTGAGCAAGCTGCAACCCCTGAGAAGGACTCGTCACTATCATCATCAC
FD990287       --> ..................................................
FD569738       --> TGTTGAGCAAGCTGCAACCCCTGAGAAGGACTCGTCACTATCATCATCAC
EW735583       --> TGGTGAGCAAGCTGCAACCCCTGAGAAGGACTCGTCACTATCATCCTCAC
EX764316       --> TGGTGAGCAAGCTGCAACCCCTGAGAAGGACTCGTCACTATCATCATCAC
FD570970       --> ..................................................
EV537984       --> TGGTGAGCAAGCTGCAACCCCTGAGAAGGACTCGTCACTATCATCATCGC
EV528197       --> .gggGAGCAAGCTGCAACCCCTGAGAAGGACTCGTCACTATCATCATCAC

               801    -    851
UN16415        --> TGATCACAACTGGGAACAAATGGGCACACAAGATACTAGAGCCAGAGACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532253       <-- TGATCACAACTGGGAACAAATGGGCACACAAGATACTAGAGCCAGAGACA
EW718232       --> ..................................................
EV524614       --> TGATCACAACTGGGAACAAATGGGCACACAAGATACTAGAGCCAGAGACA
EY915675       --> TGATCACAACTGGGAACAAATGGGCACACAAGATACTAGAGCCAGAGACA
FD990287       --> ..................................................
FD569738       --> TGATCACAACTGGGAATAAATGGGCACACAAGATACTAGAGCCAGAGACA
EW735583       --> TGATCACAACTGGGAACAAATGGGCACACAAGATACTAGAGCCAGAGACA
EX764316       --> TGATCACAACTGGGAACAAATGGGCACACAAGATACTAGAGCCAGAGACA
FD570970       --> ..................................................
EV537984       --> TGATCACAACTGGGAACAAATGGGCACACAAGATACTAGAGCCAGAGACA
EV528197       --> TGATCACAACTGGGAACAAATGGGCACACAAGATACTAGAGCCAGAGACA

               851    -    901
UN16415        --> GGATGTCTCCTGATAGCAACAGAGAAGCTAGATGGAGTCCACATCTTCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532253       <-- GGATGTCTCCTGATAGCAACAGAGAAGCTAGACGGAGTCCACATCTTCGA  Raphanus raphanistrum subsp. maritimus
EW718232       --> ..................................................  Raphanus sativus var. oleiformis
EV524614       --> GGATGTCTCCTGATAGCAACAGAGAAGCTAGACGGAGTCCACATCTTCGA  Raphanus raphanistrum subsp. maritimus
EY915675       --> GGATGTCTCCTGATAGCAACAGAGAAGCTAGATGGAGTCCACATCTTCGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD990287       --> ..................................................  Raphanus raphanistrum subsp. landra
FD569738       --> GGATGTCTCCTAATAGCAAC..............................  Raphanus sativus cv Early Scarlet Globe
EW735583       --> GGATGTCTCCTGATAGCAACAGAGAAGCTAGATGGAGTCCACATCTTCGA  Raphanus sativus cv Rat-Tail Radish #3870
EX764316       --> GGATGTCTCCTGATAGCAACAGAGAAGCTAGATGGAGTCCACATCTTCGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD570970       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EV537984       --> GGATGTCTCCTGATAGCAACAGAGAAGCTAGAAGGAGTCCACATCTTCGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV528197       --> GGATGTCTCCTGATAGCAACAGAGAAGCTAGACGGAGTCCACATCTTCGA  Raphanus raphanistrum subsp. maritimus

               901    -    951
UN16415        --> AAAGACGGTGATCCTCCTCCTCTCTGTTGGACCCTCAGGTCCTATAGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532253       <-- AAAGACGGTGATCCTCCTCCTCTCAGTTGGACCCTCAGGTCCTATAGGAG  Raphanus raphanistrum subsp. maritimus
EW718232       --> ..................................................  Raphanus sativus var. oleiformis
EV524614       --> AAAGACGGTGATCCTCCTCCTCTCAGTTGGACCCTCAGGTCCTATAGGAG  Raphanus raphanistrum subsp. maritimus
EY915675       --> AAAGACGGTGATCCTCCTCCTCTCTGTTGGACCCTCAGGTCCTATAGGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD990287       --> ..................................................  Raphanus raphanistrum subsp. landra
FD569738       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EW735583       --> AAAGACGGTGATCCTCCTCCTCTCTGTTGGACCCTCAGGTCCTATAGGAG  Raphanus sativus cv Rat-Tail Radish #3870
EX764316       --> AAAGACGGTGATCCTCCTCCTCTCTGTTGGACCCTCAGGTCCTATAGGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD570970       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EV537984       --> AAAGACGGTGATCCTCCTCCTCTCTGTTGGACCCTCAGGTCCTATAGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV528197       --> AAAGACGGTGATCCTCCTCCTCTCAGTTGGACCCTCAGGTCCTATAGGAG  Raphanus raphanistrum subsp. maritimus

               951    -   1001
UN16415        --> TCATCCTCAACCGTCCCTCGCTCATGTCAATCAAGGAGACCACCAAATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532253       <-- TCATCCTCAACCGTCCCTCGCTCATGTCAATCAAGGAGACCACCAAATCA  Raphanus raphanistrum subsp. maritimus
EW718232       --> ..................................................  Raphanus sativus var. oleiformis
EV524614       --> TCATCCTCAACCGTCCCTCGCTCATGTCAATCAAGGAGACCACCAAATCA  Raphanus raphanistrum subsp. maritimus
EY915675       --> TCATCCTCAACCGTCCCTCGCTCATGTCAA--AAAGAGACCACCAAATCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD990287       --> ..................................................  Raphanus raphanistrum subsp. landra
FD569738       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EW735583       --> TCATCCTCAACCGTCCCTCGCTCATGTCAATCAAAGAGACCACCAAATCA  Raphanus sativus cv Rat-Tail Radish #3870
EX764316       --> TCATCCTCAACCGTCCCTCGCTCATGTCAATCAAAGAGACCACCAAATCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD570970       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EV537984       --> TCATCCTCAACCGTCCCTCGCTCATGTCAATCAAGGAGACCACAAAATCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV528197       --> TCATCCTCAACCGTCCCTCGCTCATGTCAATCAAGGAGACCACCAAATCA  Raphanus raphanistrum subsp. maritimus

               1001   -   1051
UN16415        --> ACGGTCCTAGACATGGCGGG-AACGTTTTCAGACAAGAGTCTCTT-CTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532253       <-- ACGGTCCTAGACATGGCGGG-AACGTTTTCAGACAAGAGTCTCTT-CTTT  Raphanus raphanistrum subsp. maritimus
EW718232       --> ..................................................  Raphanus sativus var. oleiformis
EV524614       --> ACGGTCCTAGACATGGCGGG-AACGTTTTCAGACAAGAGTCTCTT-CTTT  Raphanus raphanistrum subsp. maritimus
EY915675       --> ACGGTCCTAGATATGGCGGG-AACATTTTCAGACA...............  Raphanus raphanistrum subsp. raphanistrum (NY)
FD990287       --> ..................................................  Raphanus raphanistrum subsp. landra
FD569738       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EW735583       --> ACGGTCCTAGACATGGCGGG-AACATTTTCAGACACAAGCCTCTT-CTTT  Raphanus sativus cv Rat-Tail Radish #3870
EX764316       --> ACGGTCCTAGACATGGCGGG-AACATTTTCAGACACAAGCCTCTT-CTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD570970       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EV537984       --> ACGGTCCTAGACATGGCGGGGAACGTTTTCAGACAAGAGCCTCTTTCTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV528197       --> ACGGTCCTAGACATGGCGGG-AACGTTTTCAGACAAGAGTCTCTT-CTTT  Raphanus raphanistrum subsp. maritimus

               1051   -   1101
UN16415        --> GGTGGACCTCTGGAAGAAGGGTTGTTCCTGGTGAGTCCTAGGAGAGGCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532253       <-- GGTGGACCTCTGGAAGAAGGGTTGTTCCTGGTGAGTCCTAGGAGAGGCGG
EW718232       --> ..................................................
EV524614       --> GGTGGACCTCTGGAAGAAGGGTTGTTCCTGGTGAGTCCTATGAGAGGCGG
EY915675       --> ..................................................
FD990287       --> ..................................................
FD569738       --> ..................................................
EW735583       --> GGTGGACCTTTGGAAGAA................................
EX764316       --> GGTGG.............................................
FD570970       --> ..................................................
EV537984       --> GGTGGACCTt........................................
EV528197       --> GGTGGACCTCTGGAAGAAGGGTTGTTCCTGGTGAGTCCTAGGAGAGGCGG

               1101   -   1151
UN16415        --> AGACAACGAGGTTGAGAAGAGCGGAGTAGCGTTCAAAGAGGTGATGGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532253       <-- AGACAACGAGGTTGAGAAGAGCGGAGTAGCGTTCAAAGAGGTGATGGAAG
EW718232       --> ..................................................
EV524614       --> AGACAACGAGGTTGAGAAGAGCGGAGTAGCGCTCAAAGAG-TGATGGAAG
EY915675       --> ..................................................
FD990287       --> ..................................................
FD569738       --> ..................................................
EW735583       --> ..................................................
EX764316       --> ..................................................
FD570970       --> ..................................................
EV537984       --> ..................................................
EV528197       --> AGACAACGAGGTTGAGAAGAGCGGAGTAGCGTTCAAAGAGGTGATGGAAG

               1151   -   1201
UN16415        --> GTTTGTACTACGGGACGAGAGAGAGTGTGGGGTTGGCTGCAGAGATGGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532253       <-- GTTTGTACTACGGGACGAGAGAGAGTGTGGGGTTGGCTGCAGAGATGGTG
EW718232       --> ..................................................
EV524614       --> -TTTGTACT.........................................
EY915675       --> ..................................................
FD990287       --> ..................................................
FD569738       --> ..................................................
EW735583       --> ..................................................
EX764316       --> ..................................................
FD570970       --> ..................................................
EV537984       --> ..................................................
EV528197       --> GTTTGTACTACGGGACGAGAGAGAGTGTGGGGTTGGCTGCAGAGATGGTG

               1201   -   1251
UN16415        --> AAGAGGAAGCTGGTGGGGAGAAGTGAGATAAGATTCTTTGATGGGTACTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532253       <-- AAGAGGAAGCTGGTGGGGAGAAGTGAGATAAGATTCTTTGATGGGTACTG
EW718232       --> ..................................................
EV524614       --> ..................................................
EY915675       --> ..................................................
FD990287       --> ..................................................
FD569738       --> ..................................................
EW735583       --> ..................................................
EX764316       --> ..................................................
FD570970       --> ..................................................
EV537984       --> ..................................................
EV528197       --> AAGAGGAAGCTGGTGGGGAGAAGTGAGATAAGATTCTTTGATGGGTACTG

               1251   -   1301
UN16415        --> TGGTTGGGAGAAAGAGCAGTTGAAAGCAGAGGTGTTGGGTGGGTACTGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532253       <-- TGGTTGGGAGAAAGAGCAGTTGAAAGCAGAGGTGTTGGGTGGGTACTGGA
EW718232       --> ..................................................
EV524614       --> ..................................................
EY915675       --> ..................................................
FD990287       --> ..................................................
FD569738       --> ..................................................
EW735583       --> ..................................................
EX764316       --> ..................................................
FD570970       --> ..................................................
EV537984       --> ..................................................
EV528197       --> TGGTTGGGAGAAAGAGCAGTTGAAAGCAGAGGTGTTGGGTGGGTACTGGA

               1301   -   1351
UN16415        --> CTGTAGCTGCTTGTAGCTTGAGTGTTGTTGAGCTTGGTTCGGTTGTACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532253       <-- CTGTAGCTGCTTGTAGCTTGAGTGTTGTTGAGCTTGGTTCGGTTGTACAA
EW718232       --> ..................................................
EV524614       --> ..................................................
EY915675       --> ..................................................
FD990287       --> ..................................................
FD569738       --> ..................................................
EW735583       --> ..................................................
EX764316       --> ..................................................
FD570970       --> ..................................................
EV537984       --> ..................................................
EV528197       --> CTGTAGCTGCTTGTAGCTTGAGTGTTGTTGAGCTTGGTTCGGTTGTACAA

               1351   -   1401
UN16415        --> AGTCAAGGTCTTTGGGATGAGGTTGTTGGTCTTATTGGACCTCAAACTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532253       <-- AGTCAAGGTCTTTGGGATGAGGTTGTTGGTCTTATTGGACCTCAAACTGG
EW718232       --> ..................................................
EV524614       --> ..................................................
EY915675       --> ..................................................
FD990287       --> ..................................................
FD569738       --> ..................................................
EW735583       --> ..................................................
EX764316       --> ..................................................
FD570970       --> ..................................................
EV537984       --> ..................................................
EV528197       --> AGTCAAGGTCTTTGGGATGAGGTTGTTGGTCTTATTGGACCTCAAACTGG

               1401   -   1451
UN16415        --> GCTCTGTTATCTAAACTTATTAAAGATCTTTGAGTTGATTGACAAATGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532253       <-- -CTCTGTTATCTAAACTTATTAAAGATCTTTGAGTTGATTGACAAATGAA
EW718232       --> ..................................................
EV524614       --> ..................................................
EY915675       --> ..................................................
FD990287       --> ..................................................
FD569738       --> ..................................................
EW735583       --> ..................................................
EX764316       --> ..................................................
FD570970       --> ..................................................
EV537984       --> ..................................................
EV528197       --> GCTCTGTTATCTAAACTTATTAAAGATCTTTGAGTTGATTGACAAATGAA

               1451   -   1501
UN16415        --> AAGTAGCTTTATCAAC
                   ~~~~~~~~~~~~~~~~
EV532253       <-- AAGTAGCTTTATC...
EW718232       --> ................
EV524614       --> ................
EY915675       --> ................
FD990287       --> ................
FD569738       --> ................
EW735583       --> ................
EX764316       --> ................
FD570970       --> ................
EV537984       --> ................
EV528197       --> AAGTAGCTTTATCAAC