1      -     51
UN16459        --> CTTTTATTAAAAACATTTATTTTTTTATGAAATCAAAATTCAAAACATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV524777       <-- ..................................................
FD979556       <-- ..................................................
FD550622       <-- ..................................................
FD962678       <-- ..................................................
EV529693       --> CTTTTATTAAAAACATTTATTTTTTTATGAAATCAAAATTCAAAACATAT
FD546556       --> ..............................AATCAAAATTCAAAACATAT
FD959174       --> ..............................AATCAAAATTCAAAACATAT
FD935389       --> ................................................aa

               51     -    101
UN16459        --> GGTA-TCAGTATCCCAAACATACTTTTCTCTCTGTTTCTTTGTGATGTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV524777       <-- ..................................................
FD979556       <-- ..................................................
FD550622       <-- ..................................................
FD962678       <-- ..................................................
EV529693       --> GGTA-TCAGTATCCCAAACATACTTTTCTCTCTGTTTCTTTGTGATGTAA
FD546556       --> GGTAACCAGTATCCCAAACATACTT--CTCTCTGGTTCTTTGTGATGTAA
FD959174       --> GGTA-TCAGTATCCCAAACATACTTTTCTCTCTGTTTCTTTGTGATGTAA
FD935389       --> ttcaaaCAGTATCCCAAACATACTTATCT-T-TGTTTCTTTGTGATGTAA

               101    -    151
UN16459        --> ATAATCATAAGTTGTAAGAAATTCACCAAGAATAATCAAACTCTGACACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV524777       <-- ..........agTGTAAGAAAT-CACCAAGAATAATCAAACTCTGACACT
FD979556       <-- ................AGAAATCCACCAAGAATAATCAA-CTCTGACACT
FD550622       <-- ..................................................
FD962678       <-- ..................................................
EV529693       --> ATAATCATAAGTTGTAAGAAATTCACCAAGAATAATCAAACTCTGACACT
FD546556       --> ATAATCATAAGTTGTAAGAAATCCACCAAGAATAATCAAACTCTGACACT
FD959174       --> ATAATCATAAGTTGTAAGAAATTCACCAAGAATAATCAAACTCTGACACT
FD935389       --> ATAATCATAAGCTGTAAGAAATTCACCAAGAATAATCAAACTCTGACACT

               151    -    201
UN16459        --> -GTGTTCTTGAGATGGATAGTGTTTCAAGACATGAACAGAGCCTTGCATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV524777       <-- -GTGTTCTTGAGATGGATAGTGTTTCAAGACATGAACAGAGCCTTGCATT
FD979556       <-- -GTGT-C-TGAGATGGATAGTGTTTCAAGACATGAACAGAGC-TTGCATT
FD550622       <-- ..................................................
FD962678       <-- ..................................................
EV529693       --> -GTGTTCTTGAGATGGATAGTGTTTCAAGACATGAACAGAGCCTTGCATT
FD546556       --> TGTGTTCTTGAGATGGATAGTGTTTCAAGACATGAACAGAGCCTTGCATT
FD959174       --> -GTGTTCTTGAGATGGATAGTGTTTCAAGACATGAACAGAGCCTTGCATT
FD935389       --> -GTGTTCTTGAGATGGATAGTGTTTCAAGACATGAAGAGAGCCTTGCATT

               201    -    251
UN16459        --> TTGCCATTGTGTCATCTGGACTCGTAACTGAATGGCCTATTGTTTTTGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV524777       <-- TTGCCATTGTGTCATCTGGACTCGTAACTGAATGGCCTATTGTTTTTGGT
FD979556       <-- T-GCCATTGTGTCATCTGGACTCGTAACTGAATGGCCTATTGTTTTTGGT
FD550622       <-- ..........................................gTTTTGGT
FD962678       <-- ..................................................
EV529693       --> TTGCCATTGTGTCATCTGGACTCGTAACTGAATGGCCTATTGTTTTTGGT
FD546556       --> TTGCCATTGTGTCATCTGGACTCGTAACTGAATGGCCTATTGTTTTTGGT
FD959174       --> TTGCCATTGTGTCATCTGGACTCGTAACTGAATGGCCTATTGTTTTTGGT
FD935389       --> TTGCCATTGTGTCATCTGGACTCGTAACTGAATGGCCTATTGTTTTTGGT

               251    -    301
UN16459        --> GATTCATAGATTTCATAGTCGTTTCCTCCCTCATAGGTTTTGTCACCGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV524777       <-- GATTCATAGATTTCATAGTCGTTTCCTCCCTCATAGGTTTTGTCACCGAA  Raphanus raphanistrum subsp. maritimus
FD979556       <-- GATTCATAGATCTCATAATCGTTTCCTCCCTCATTGGTTTTGTCACTGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD550622       <-- GATTCATAGATCTCATAATCGTT-CCTCC-TCATAGGTTT-GTCAC-GAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD962678       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV529693       --> GATTCATAGATTTCATAGTCGTTTCCTCCCTCATAGGTTTTGTCACCGAA  Raphanus raphanistrum subsp. maritimus
FD546556       --> GATTCATAGATCTCATAATCGTTTCCTCCCTCATAGGTTTTGTCACCGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD959174       --> GATTCATAGATTTCATAGTCGATTCCTCCCTCATAGGTTTTGTCACCGAA  Raphanus raphanistrum subsp. maritimus
FD935389       --> GATTCATAGATTTCATAGTCGTTTCCTCCCTCGTAGGTCTTGTCACCGAA  Raphanus sativus var. oleiformis

               301    -    351
UN16459        --> GAAATGGATTTCAGTAAAGTCTTCAAGGTATTGCAAGCAGTAAGTCTTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV524777       <-- GAAATGGATTTCAGTAAAGTCTTCAAGGTATTGCAAGCAGTAAGTCTTGT  Raphanus raphanistrum subsp. maritimus
FD979556       <-- GAAATGGATTTCAGTAAAGTCTTCAAGGTATTGCAAGCAGTAAGTCTTAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD550622       <-- GAAATGGATTTCAGTAAAGTCTTCAAGGTATTGCAAGCAGTAAGTCTTAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD962678       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV529693       --> GAAATGGATTTCAGTAAAGTCTTCAAGGTATTGCAAGCAGTAAGTCTTGT  Raphanus raphanistrum subsp. maritimus
FD546556       --> AAAATGGATTTCAGTAAAGTCTTCAAGGTATTGCAAGCAGTAAGTCTTAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD959174       --> GAAATGGATTTCAGTAAAGTCTTCAAGGTATTGCAAGCAGTAAGTCTTGT  Raphanus raphanistrum subsp. maritimus
FD935389       --> GAAATGGATTTCAGTGAAGTCTTCAAGGTATTGCAAGCAGTAAGTCTTAT  Raphanus sativus var. oleiformis

               351    -    401
UN16459        --> CCCAACCTTTAGGAAAGACATCGAAGCTAATCTGTCCTCCAATGGAGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV524777       <-- CCCAACCTTTAGGAAAGACATCGAAGCTAATCTGTCCTCCAATGGAGAAA
FD979556       <-- CCCAACCTTTAGGAAAGACATCGAAGCTAATCTGTCCTCCAATGGAGAAA
FD550622       <-- CCCAACCTTTAGGAAAGACATCGAAGCTAATCTGTCCTCCAATGGAGAAA
FD962678       <-- CCCAAC-TTTAGGAAAGACATCGAAGCTAATCTGTCCTCCAATGGAGAAA
EV529693       --> CCCAACCTTTAGGAAAGACATCGAAGCTAATCTGTCCTCCAATGGAGAAA
FD546556       --> CCCAACCTTTAGGAAAGACATCGAAGCTAATCTGTCCTCCAATGGAGAAA
FD959174       --> CCCAACCTTTAGGAAAGACATCGAAGCTAATCTGTCCTCCAATGGAGAAA
FD935389       --> CCCAACCTTTAGGAAAGACATCGAAGCTAATCTGTCCTCCAATGGAGAAA

               401    -    451
UN16459        --> GTAAGGTTCAGATGCGCAAACCGCTCACGAAGTTCAGCCACCATCTTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV524777       <-- GTAAGGTTCAGATGCGCAAACCGCTCACGAAGTTCAGCCACCATCTTTGG
FD979556       <-- GTAAGGTTCAGATGCGCAAACCGCTCACGAAGTTCAGCCACCATCTTTGG
FD550622       <-- GTAAGGTTCAGATGCGCAAACCGCTCACGAAGTTCAGCCACCATCTTTGG
FD962678       <-- GTAAGGTTCAGATGCGCAAACCGCTCACGAAGTTCAGCCACCATCTTTGG
EV529693       --> GTAAGGTTCAGATGCGCAAACCGCTCACGAAGTTCAGCCACCATCTTTGG
FD546556       --> GTAAGGTTCAAATGCGCAAACCGCTCACGAAGTTCAGCCACCATCTTTGG
FD959174       --> GTAAGGTTCAGATGCGCAAACCGCTCACGAAGTTCAGCCACCATCTTTGG
FD935389       --> GTAAGGTTCAGATGCGCAAACCGCTCACGAAGTTCAGCCACCATCTTTGG

               451    -    501
UN16459        --> TCTAATGTTTTGAACCTTATCATATCTCTCGAATTCGTCTCTTTCTTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV524777       <-- TCTAATGTTTTGAACCTTATCATATCTCTCGAATTCGTCTCTTTCTTCTT  Raphanus raphanistrum subsp. maritimus
FD979556       <-- TCTAATGTTGTGAACCTTATCATATCTCTCGAATTCGTCTCTTTCTTCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD550622       <-- TCTAATGTTGTGAACCTTATCATATCTCTCGAATTCGTCTCTTTCTTCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD962678       <-- TCTAATGTTTTGAACCTTATCATATCTCTCGAATTCGTCTCTTTCTTCTT  Raphanus raphanistrum subsp. maritimus
EV529693       --> TCTAATGTTTTGAACCTTATCATATCTCTCGAATTCGTCTCTTTCTTCTT  Raphanus raphanistrum subsp. maritimus
FD546556       --> TCTAATGTTGTGAACCTTATCATATCTCTCGAATTCGTCTCTTTCTTCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD959174       --> TCTAATGTTTTGAACCTTATCATATCTCTCGAATTCGTCTCTTTCTTCTT  Raphanus raphanistrum subsp. maritimus
FD935389       --> TCTAATGTTTTGAACCTTATCATATCTCTCGAATTCGTCTCTTTCTTCTT  Raphanus sativus var. oleiformis

               501    -    551
UN16459        --> GGCTGCAGTTGCGACCAATAGGTGATACATTGAGCATGCCATTTCGGAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV524777       <-- GGCTGCAGTTGCGACCAATAGGTGATACATTGAGCATGCCATTTCGGAAC
FD979556       <-- GGCTGCAGTTGCGACCAATAGGTGATACATTGAGCATGCCATTTCGGAAC
FD550622       <-- GGCTGCAGTTGCGACCAATAGGTGATACATTGAGCATGCCATTTCGGAAC
FD962678       <-- GACTGCAATTGCGACCAATAGGTGATACATTGAGCATGCCATTTCGGAAC
EV529693       --> GGCTGCAGTTGCGACCAATAGGTGATACATTGAGCATGCCATTTCGGAAC
FD546556       --> GGCTGCAGTTGCGACCAATAGGTGATACATTGAGCATGCCATTTCGGAAC
FD959174       --> GACTGCAATTGCGACCAATAGGTGATACATTGAGCATGCCATTTCGGAAC
FD935389       --> GGCTGCAGTTGCGACCc.................................

               551    -    601
UN16459        --> TCTATGAATGTTCCCCTTTTGATTGGAATATCCAAGTCTGCAATGTAGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV524777       <-- TCTATGAATGTTCCCCTTTTGATTGGAATATCCAAGTCTGCAATGTAGTG
FD979556       <-- TCTATGAATGTTCCCCTTTTGATTGGAATATCCAAGTCTGCAATGTAGTG
FD550622       <-- TCTATGAATGTTCCCCTTTTGATTGGAATATCCAAGTCTGCAATGTAGTG
FD962678       <-- TCTATGAATGTTCCCCTTTTGATTGGAATATCCAAGTCTGCAATGCAGTG
EV529693       --> TCTATGAATGTTCCCCTTTTGATTGGAATATCCAAGTCTGCAATGTAGTG
FD546556       --> TCTATGAATGTTCCCCTTTTGATTGGAATATCCAAGTCTGCAATGTAGTG
FD959174       --> TCTATGAATGTTCCCCTTTTGATTGGAATATCCAAGTCTGCAATGCAGTG
FD935389       --> ..................................................

               601    -    651
UN16459        --> CAGCGTAAATTTTATCAACTCCTTGAGTTTATCTTCTCCCAAATGCAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV524777       <-- CAGCGTAAATTTTATCAACTCCTTGAGTTTATCTTCTCCCAAATGCAGCT
FD979556       <-- CAGCGTAAATTTTATCAACTCCTTGAGTTTATCTTCTCCCAAATGCAGCT
FD550622       <-- CAGCGTAAATTTTATCAACTCCTTGAGTTTATCTTCTCCCAAATGCAGCT
FD962678       <-- CAGCGTAAATTTTATCAACTCCTTGAGTTTATCTTCTCCCAAATGCAGCT
EV529693       --> CAGCGTAAATTTTATCAACTCCTTGAGTTTATCTTCTCCCAAATGCAGCT
FD546556       --> CAGCGTAAATTTTATCAACTCCTTGAGTTTATCTTCTCCCAAATGCAGCT
FD959174       --> CAGCGTAAATTTTATCAACTCCTTGAGTTTATCTTCTCCCAAATGCAGCT
FD935389       --> ..................................................

               651    -    701
UN16459        --> TCAGGCTCTGGATCCCAATGGGTTTTCCATCTTTATGAGCAACAAGACCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV524777       <-- TCAGGCTCTGGATCCCAATGGGTTTTCCATCTTTATGAGCAACAAGACCA
FD979556       <-- TCAGGCTCTGGATCCCAATGGGTTTTCCATCTTTATGAGCAACAAGACCA
FD550622       <-- TCAGGCTCTGGATCCCAATGGGTTTTCCATCTTTATGAGCAACAAGACCA
FD962678       <-- TCAGGCTCTGGATCCCAATGGGTTTTCCATCTTTATGAGCAACAAGACCA
EV529693       --> TCAGGCTCTGGATCCCAATGGGTTTTCCATCTTTATGAGCAACAAGACCA
FD546556       --> TCAGGCTCTGGATCCCAATGGGTTTTCCATCTTTATGAGCAACAAGACCA
FD959174       --> ..................................................
FD935389       --> ..................................................

               701    -    751
UN16459        --> TTCTCAGAGAAACAATAATCATAGTCGGTAGTGACTGTTTTGCCAAGCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV524777       <-- TTCTCAGAGAAACAATAATCATAGTCGGTAGTGACTGTTTTGCTAAGCTG
FD979556       <-- TTCTCAGAGAAACAATAATCATAGTCGGTAGTGACTGTTTTGCCAAGCTG
FD550622       <-- TTCTCAGAGAAACAATAATCATAGTCGGTAGTGACTGTTTTGCCAAGCTG
FD962678       <-- TTCTCAGAGAAACAATAATCATAGTCGGTAGTGACTGTTTTGCCAAGCTG
EV529693       --> TTCTCAGAGAAACAATAATCATAGTCGGTAGTGACTGTTTTGCTAAGCTG
FD546556       --> TTCTCAGAGAAACAATAATCATAGTCGGTAGTGACTGTTTTGCCAAGCTG
FD959174       --> ..................................................
FD935389       --> ..................................................

               751    -    801
UN16459        --> CTCAGATATCTTGGTTAGATCAGATCCACCGACGACTCCAACAGTGACGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV524777       <-- CTCAGATATCTTGGTTAAATCAGATCCACCGACGACTCCAACAGTGACGA  Raphanus raphanistrum subsp. maritimus
FD979556       <-- CTCAGATATCTTGGTTAGATCAGATCCACCAACGACTCCAACAGTGACGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD550622       <-- CTCAGATATCTTGGTTAGATCAGATCCACCAACGACTCCAACAGTGACGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD962678       <-- CTCAGATATCTTGGTTAAATCAGATCCACCGACGACTCCAACAGTGACGA  Raphanus raphanistrum subsp. maritimus
EV529693       --> CTCAGATATCTTGGTTAAATCAGATCCACCGACGAC..............  Raphanus raphanistrum subsp. maritimus
FD546556       --> CTCAGATATCTTGGTTAGATCAGATCCACCAACGACTCCA-CAGTGACGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD959174       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD935389       --> ..................................................  Raphanus sativus var. oleiformis

               801    -    851
UN16459        --> CCTTGCGCAATTCTCGGATGAAATCGAGAAGTTCTGGAGTAGCTTCCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV524777       <-- CCTTGCGCAATTCTCGGATGAAATCGAGAAGTTCTGGAGTAGCTTCCTTC
FD979556       <-- CCTTGCGCAATTCTCGGATGAAATCGAGAAGTTCTGGAGTAGCTTCCTTC
FD550622       <-- CCTTGCGCAATTCTCGGATGAAATCGAGAAGTTCTGGAGTAGCTTCCTTC
FD962678       <-- CCTTGCGCAATTCTCGGATGAAATCGGGAAGTTCTGGAGTAGCTTCCTTC
EV529693       --> ..................................................
FD546556       --> CCTTGCGCAAT-CTCGGATGAAATCGAGAAGT-CTGGAGT..........
FD959174       --> ..................................................
FD935389       --> ..................................................

               851    -    901
UN16459        --> CTTGGAGCTGTGAGAGTCCCGTCCACGTCGAACAAAGCGATCACTCCTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV524777       <-- CTTGGAGCTGTGAGAGTCCCGTCCACGTCGAACAAAGCGATCACTCCTGC
FD979556       <-- CTTGGAGCTGTGAGAGTCCCGTCCACGTCGAACAAAGCGAc.........
FD550622       <-- CTTGGAGCTGTGAGAGTCCCGTCCACGTCGAACAAAGCGATCACTCCTGC
FD962678       <-- CTTGGAGCTGTGAGAGTCCCGTCCACGTCGAACAAAGCGATCACTCCTGC
EV529693       --> ..................................................
FD546556       --> ..................................................
FD959174       --> ..................................................
FD935389       --> ..................................................

               901    -    951
UN16459        --> CTTCTTGGCCGCCATTGAATGTGGATGAAGAGTTTTCACAATGGGATATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV524777       <-- CTTCTTGGCCGCCATTGAATGTGGATGAAGA...................
FD979556       <-- ..................................................
FD550622       <-- CTTCTTGGCCGTCATTGAATGTGGATGCAGAGTTTTCACAATGGGATATG
FD962678       <-- CTTCTTGGCCGCCATTGAATGTGGATGAAGAGTTTTCACAATGGGATATG
EV529693       --> ..................................................
FD546556       --> ..................................................
FD959174       --> ..................................................
FD935389       --> ..................................................

               951    -   1001
UN16459        --> ATAATTAATGGAGAGCAAGAAGATGATGTGAATGTCAATTTTGGACCGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV524777       <-- ..................................................
FD979556       <-- ..................................................
FD550622       <-- AGAATTAATGGAGAGCAAGA-GATGATGTc....................
FD962678       <-- ATAATTAATGGAGAGCAAGAAGATGATGTGAATGTCAATTTTGGACCGAT
EV529693       --> ..................................................
FD546556       --> ..................................................
FD959174       --> ..................................................
FD935389       --> ..................................................

               1001   -   1051
UN16459        --> CTCC
                   ~~~~
EV524777       <-- ....
FD979556       <-- ....
FD550622       <-- ....
FD962678       <-- CTCC
EV529693       --> ....
FD546556       --> ....
FD959174       --> ....
FD935389       --> ....