RadishBase

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Alignment for radish unigene UN16472

               1      -     51
UN16472        --> GCATCAACATATCATAGTTTATATTAAAGAGCAAGATATGATTTTTCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559688       <-- ..................................................
FD540342       <-- ..................................................
FD559030       <-- ..................................................
EY908795       <-- ..................................................
EV526564       <-- ..................................................
FD556973       <-- ..................................................
FD973279       <-- ..................................................
FD974298       <-- ..................................................
FD558537       <-- ..................................................
FD554417       --> GCATCAACATATCATAGTTTATATTAAAGAGCAAGATATGATTTTTCTCA
FD553176       --> ............................ggGCAAGATATGATTTTTCTCA
FD960579       --> ......................................TGATTTTTCTCA
EY919279       --> ..............................................CTCA
EY920247       --> ..............................................CTCA
FD555350       --> ................................................CA
FD536865       --> ..........................................atagtaat
FD969002       --> ..............................ctcaaccgatatatagtaat
FD969802       --> ..............................ctcaaccgatatatagtaat
EV531013       --> ..................................................
EY934294       --> ..................................................

               51     -    101
UN16472        --> ACCGATCTTAAATTATCAATGATTATGGTAATAAAAGGGTGATAAACAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559688       <-- ..................................................
FD540342       <-- ..................................................
FD559030       <-- ..................................................
EY908795       <-- ..................................................
EV526564       <-- ..................................................
FD556973       <-- ..................................................
FD973279       <-- ..................................................
FD974298       <-- ..................................................
FD558537       <-- ..................................................
FD554417       --> ACCGATCTTAAATTATCAATGATTATGGTAATAAAAGGGTGATAAACAAA
FD553176       --> ACCGATCTTAAATTATCAATGATTATGGTAATAAAAGGGTGATAAACAAA
FD960579       --> ACCGATCTTAAATTATCAATGATTATGGTAATAAAAGGGTGATAAACAAA
EY919279       --> ACCGATCTTAAATTATCAATGATTATGGTAATAAAAGGGTGATAAACAAA
EY920247       --> ACCGATCTTAAATTATCAATGATTATGGTAATAAAAGGGTGATAAACAAA
FD555350       --> ACCGATCTTAAATTATCAATGATTATGGTAATAAAAGGGTGATAAACAAA
FD536865       --> aatGATCTTAAATTATCAATGATTATGGTAATAAAAGGGTGATAAACAAA
FD969002       --> aatGATCTTAAATTATCAATGATTATGGTAATAAAAGGGTGATAAACAAA
FD969802       --> aatGATCTTAAATTATCAATGATTATGGTAATAAAAGGGTGATAAACAAA
EV531013       --> ......................TTATGGTAATAAAAGGGTGATAAACAAA
EY934294       --> ..................................................

               101    -    151
UN16472        --> CCAAAAAGAAAAGCCAAAAAGATAACACTCAGGCAATAATCGTTGAGAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559688       <-- ........................................tcgTGAGAGT
FD540342       <-- ..................................................
FD559030       <-- ..................................................
EY908795       <-- ..................................................
EV526564       <-- ..................................................
FD556973       <-- ..................................................
FD973279       <-- ..................................................
FD974298       <-- ..................................................
FD558537       <-- ..................................................
FD554417       --> CCAAAAAGAAAAGCCAAAAAGATAACACTCAGGCAATAATCGTTGAGAGT
FD553176       --> CCAAAAAGAAAAGCCAAAAAGATAACACTCAGGCAATAATCGTTGAGAGT
FD960579       --> CCAAAAAGAAAAGCCAAAAAGATAACACTCAGGCAATAATCGTTGAGAGT
EY919279       --> CCAAAAAGAAAAGCCAAAAAGATAACACTCAGGCAATAATCGTTGAGAGT
EY920247       --> CCAAAAAGAAAAGCCAAAAAGATAACACTCAGGCAATAATCGTTGAGAGT
FD555350       --> CCAAAAAGAAAAGCCAAAAAGATAACACTCAGGCAATAATCGTTGAGAGT
FD536865       --> CCAAAAAGAAAAGCCAAAAAGATAACACTCGGGCAATAATCGTTGAGAGT
FD969002       --> CCAAAAAGAAAAGCCAAAAAGATAACACTCGGGCAATAATCGTTGAGAGT
FD969802       --> CCAAAAAGAAAAGCCAAAAAGATAACACTCGGGCAATAATCGTTGAAAGT
EV531013       --> CCAAAAAGAAAAGCCAAAAAGATAACACTCAGGCAATAATCGTTGAGAGT
EY934294       --> ...................................ctcgtagagagtttg

               151    -    201
UN16472        --> ATGTTGAATCAAAGATGCTTGTTTTTATTTGGAAGATATCACAAAAACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559688       <-- ATGT-GA-TCAAAGATGCT-GTTTT-AT--TGAAGATATCACAAAAACAA
FD540342       <-- ..................................................
FD559030       <-- ..................................................
EY908795       <-- ..................................................
EV526564       <-- ..................................................
FD556973       <-- ..................................................
FD973279       <-- ..................................................
FD974298       <-- ..................................................
FD558537       <-- ..................................................
FD554417       --> ATGTTGAATCAAAGATGCTTGTTTTTATTTGGAAGATATCACAAAAACAA
FD553176       --> ATGTTGAATCAAAGATGCTTGTTTTTATTTGGAAGATATCACAAAAACAA
FD960579       --> ATGTTGAATCAAAGATGCTTGTTTTTATTTGGAAGATATCACAAAAACAA
EY919279       --> ATGTTGAATCAAAGATGCTTGTTTTTATTTGGAAGATATCACAAAAACAA
EY920247       --> ATGTTGAATCAAAGATGCTTGTTTTTATTTGGAAGATATCACAAAAACAA
FD555350       --> ATGTTGAATCAAAGATGCTTGTTTTTATTTGGAAGATATCACAAAAACAA
FD536865       --> ATGTTGAATCAAAGATGCTTGTTTTTATTTGGAAGATATCACAAAAACAA
FD969002       --> ATGTTGAATCAAAGATGCTTGTTTTTATTTGGAAGATATCACAAAAACAA
FD969802       --> ATGTTGAATCAAAGATGCTTGTTTTTATTTGGAAGATATCACAAAAACAA
EV531013       --> ATGTTGAATCAAAGATGCTTGTTTTTATTTGGAAGATATCACAAAAACAA
EY934294       --> ttgaTGAACCAAAGATGCTTGTTTTTATTTGGAAGATATCACAAAAACAA

               201    -    251
UN16472        --> AGGATGGCTCAGTGTGGATTTAGTTGAAGTCGGGCTTCTCAGGGTAAGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559688       <-- AGGATGGCTCAGTGTG-ATTTAGT-GAAGTCGGGCTTCTCAGGGTAAGTG
FD540342       <-- ..................................................
FD559030       <-- ..................................................
EY908795       <-- ..................................................
EV526564       <-- ..................................................
FD556973       <-- ..................................................
FD973279       <-- ..................................................
FD974298       <-- ..................................................
FD558537       <-- ..................................................
FD554417       --> AGGATGGCTCAGTGTGGATTTAGTTGAAGTCGGGCTTCTCAGGGTAAGTG
FD553176       --> AGGATGGCTCAGTGTGGATTTAGTTGAAGTCGGGCTTCTCAGGGTAAGTG
FD960579       --> AGGATGGCTCAGTGTGGATTTAGTTGAAGTCGGGCTTCTCAGGGTAAGTG
EY919279       --> AGGATGGCTCAGTGTGGATTTAGTTGAAGTCGGGCTTCTCAGGGTAAGTG
EY920247       --> AGGATGGCTCAGTGTGGATTTAGTTGAAGTCGGGCTTCTCAGGGTAAGTG
FD555350       --> AGGATGGCTCAGTGTGGATTTAGTTGAAGTCGGGCTTCTCAGGGTAAGTG
FD536865       --> AGGATGGCTCAGTGTGGATTTAGTTGAAGTCGGGCTTCTCAGGGTAAGTG
FD969002       --> AGGATGGCTCAGTGTGGATTTAGTTGAAGTCGGGCTTCTCAGGGTAAGTG
FD969802       --> AGGATGGCTCAGTGTGGATTTAGTTGAAGTCGGGCTTCTCAGGGTAAGTG
EV531013       --> AGGATGGCTCAGTGTGGATTTAGTTGAAGTCGGGCTTCTCAGGGTAAGTG
EY934294       --> AGGATGGCTCAGTGTGGATTTAGTTGAAGTCGGGCTTCTCAGGGTAAGTG

               251    -    301
UN16472        --> CAGCCAGATCTTTGGATCACCACGTTTGACGCGTAACATCCGGCCTTCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559688       <-- CAGCCAGATCTTTGGATCACCACGTTTGACGCGTAACATCCGGCCTTCAC  Raphanus raphanistrum subsp. landra
FD540342       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD559030       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY908795       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV526564       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD556973       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD973279       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974298       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD558537       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD554417       --> CAGCCAGATCTTTGGATCACCACGTTTGACGCGTAACATCCGGCCTTCAC  Raphanus raphanistrum subsp. landra
FD553176       --> CAGCCAGATCTTTGGATCACCACGTTTGACGCGTAACATCCGGCCTTCAC  Raphanus raphanistrum subsp. landra
FD960579       --> CAGCCAGATCTTTGGATCACCACGTTTGACGCGTAACATCCGGCCTTCAC  Raphanus raphanistrum subsp. maritimus
EY919279       --> CAGCCAGATCTTTGGATCACCACGTTTGACGCGTAACATCCGGCCTTCAC  Raphanus raphanistrum subsp. landra
EY920247       --> CAGCCAGATCTTTGGATCACCACGTTTGACGCGTAACATCCGGCCTTCAC  Raphanus raphanistrum subsp. landra
FD555350       --> CAGCCAGATCTTTGGATCACCACGTTTGACGCGTAACATCCGGCCTTCAC  Raphanus raphanistrum subsp. landra
FD536865       --> CAGCCAGATCTTTGGATCACCACGTTTGACGCATAGCATCCGGCCTTCAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969002       --> CAGCCAGATCTTTGGATCACCACGTCTGACGCATAGCATCCGGCCTTCAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969802       --> CAGCCAGATCTTTGGATCACCACGTCTGACGCATAGCATCCGGCCTTCAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV531013       --> CAGCCAGATCTTTGGATCACCACGTTTGACGCGTAACATCCGGCCTTCAC  Raphanus raphanistrum subsp. maritimus
EY934294       --> CAGCCAGATCTTTGGATCACCACGTTTGACGCGTAGCATCCGGCCTTCAC  Raphanus sativus cv Early Scarlet Globe

               301    -    351
UN16472        --> GCACTCCTCAATCGACTTCTCTTTCACCAACTGCGACATGAATCCTCCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559688       <-- GCACTCCTCAATCGACTTCTCTTTCACCAACTGCGACATGAATCCTCCAA  Raphanus raphanistrum subsp. landra
FD540342       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD559030       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY908795       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV526564       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD556973       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD973279       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974298       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD558537       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD554417       --> GCACTCCTCAATCGACTTCTCTT--GCCAACTGCGACATGAATCCTCCAA  Raphanus raphanistrum subsp. landra
FD553176       --> GCACTCCTCAATCGACTTCTCTTTCACCAACTGCGACATGAATCCTCCAA  Raphanus raphanistrum subsp. landra
FD960579       --> GCACTCCTCAATCGACTTCTCTTTCACCAACTGCGACATGAATCCTCCAA  Raphanus raphanistrum subsp. maritimus
EY919279       --> GCACTCCTCAATCGACTTCTCTTTCACCAACTGCGACATGAATCCTCCAA  Raphanus raphanistrum subsp. landra
EY920247       --> GCACTCCTCAATCGACTTCTCTTTCACCAACTGCGACATGAATCCTCCAA  Raphanus raphanistrum subsp. landra
FD555350       --> GCACTCCTCAATCGACTTCTCTTTCACCAACTGCGACATGAATCCTCCAA  Raphanus raphanistrum subsp. landra
FD536865       --> GCACTCCTCAATCGATTTCTCTTTCACCAACTGTGACATGAATCCTCCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969002       --> GCACTCCTCAATCGATTTCTCTTTCACCAACTGTGACATGAATCCTCCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969802       --> GCACTCCTCAATCGATTTCTCTTTCACCAACTGTGACATGAATCCTCCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV531013       --> GCACTCCTCAATCGACTTCTCTTTCACCAACTGCGACATGAATCCTCCAA  Raphanus raphanistrum subsp. maritimus
EY934294       --> GCACTCCTCAATCGATTTCTCTTTCACCAACTGTGACATGAATCCTCCCA  Raphanus sativus cv Early Scarlet Globe

               351    -    401
UN16472        --> CAAATGCATCACCTGCACCGTTGGTGTCAACAAGCTTCTCCTTTGGGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559688       <-- CAAATGCATCACCTGCACCGTTGGTGTCAACAAGCTTCTCCATTGAGAGA
FD540342       <-- ..................................................
FD559030       <-- ..................................................
EY908795       <-- ..................................................
EV526564       <-- ..................................................
FD556973       <-- ..................................................
FD973279       <-- ..................................................
FD974298       <-- ..................................................
FD558537       <-- ..................................................
FD554417       --> CAAATGCATCACCTGCACCGTTGGTGTCAACAAGCTTCTCCTTTGGGAGA
FD553176       --> CAAATGCATCACCTGCACCGTTGGTGTCAACAAGCTTCTCCTTTGGGAGA
FD960579       --> CAAATGCATCACCTGCACCGTTGGTGTCAACAAGCTTCTCCTTTGGGAGA
EY919279       --> CAAATGCATCACCTGCACCGTTGGTGTCAACAAGCTTCTCCTTTGGGAGA
EY920247       --> CAAATGCATCACCTGCACCGTTGGTGTCAACAAGCTTCTCCTTTGGGAGA
FD555350       --> CAAATGCATCACCTGCACCGTTGGTGTCAACAAGCTTCTCCATTGAGAGA
FD536865       --> CAAATGCATCACCTGCACCGTTGGTGTCAACAAGCTTCTCCTTTGGGAGA
FD969002       --> CAAATGCATCACCTGCACCGTTGGTGTCAACAAGCTTCCCCTTTGGGAGA
FD969802       --> CAAATGCATCACCTGCACCGTTGGTGTCAACAAGCTTCCCCTTTGGGAGA
EV531013       --> CAAATGCATCACCTGCACCGTTGGTGTCAACAAGCTTCTCCTTTGGGAGA
EY934294       --> CAAATGCATCACCTGCACCGTTGGTGTCAACAAGCTTCTCCTTTGGGAGA

               401    -    451
UN16472        --> GGGATGACTGGGTACTTCGTCACCTTTCCATCTTCAGCAACAACCACTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559688       <-- GGGATGACTGGGTACTTCGTCACCTTTCCATCTTCAGCAACAACCACTGG  Raphanus raphanistrum subsp. landra
FD540342       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD559030       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY908795       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV526564       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD556973       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD973279       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974298       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD558537       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD554417       --> GGGATGACTGGGTACTTCGTCACCTTTCCATCTTCAGCAACAACCACTGG  Raphanus raphanistrum subsp. landra
FD553176       --> GGGATGACTGGGTACTTCGTCACCTTTCCATCTTCAGCAACAACCACTGG  Raphanus raphanistrum subsp. landra
FD960579       --> GGGATGACTGGGTACTTCGTCACCTTTCCATCTTCAGCAACAACCACTGG  Raphanus raphanistrum subsp. maritimus
EY919279       --> GGGATGACTGGGTACTTCGTCACCTTTCCATCTTCAGCAACAACCACTGG  Raphanus raphanistrum subsp. landra
EY920247       --> GGGATGACTGGGTACTTCGTCACCTTTCCATCTTCAGCAACAACCACTGG  Raphanus raphanistrum subsp. landra
FD555350       --> GGGATGACTGGGTACTTCGTCACCTTTCCATCTTCAGCAACAACCACTGG  Raphanus raphanistrum subsp. landra
FD536865       --> GGGATGACAGGGTACTTCGTGACCTTTCCATCTTCAGCAACAACCACTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969002       --> GGGATGACAGGGTACTTCGTGACCTTTCCATCTTCAGCAACAACCACTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969802       --> GGGATGACAGGGTACTTCGTGACCTTTCCATCTTCAGCAACAACCACTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV531013       --> GGGATGACTGGGTACTTCGTCACCTTTCCATCTTCAGCAACAACCACTGG  Raphanus raphanistrum subsp. maritimus
EY934294       --> GGGATGACAGGGTACTTCGTGACCTTTCCATCTTCAGCAACAACCACGGG  Raphanus sativus cv Early Scarlet Globe

               451    -    501
UN16472        --> GTCTGCCCCCTGTGTAATCACTGTTGTCCTCTTGTATGTTCCTGTGGCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559688       <-- GTCTGCCCCCTGTGTAATCACTGTTGTCCTCTTGTATGTTCCTGTGGCCT  Raphanus raphanistrum subsp. landra
FD540342       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD559030       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY908795       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV526564       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD556973       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD973279       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974298       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD558537       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD554417       --> GTCTGCCCCCTGTGTAATCACTGTTGTCCTCTTGTATGTTCCTGTGGCCT  Raphanus raphanistrum subsp. landra
FD553176       --> GTCTGCCCCCTGTGTAATCACTGTTGTCCTCTTGTATGTTCCCGTGGCCT  Raphanus raphanistrum subsp. landra
FD960579       --> GTCTGCCCCCTGTGTAATCACTGTTGTCCTCTTGTATGTTCCTGTGGCCT  Raphanus raphanistrum subsp. maritimus
EY919279       --> GTCTGCCCCCTGTGTAATCACTGTTGTCCTCTTGTATGTTCCTGTGGCCT  Raphanus raphanistrum subsp. landra
EY920247       --> GTCTGCCCCCTGTGTAATCACTGTTGTCCTCTTGTATGTTCCTGTGGCCT  Raphanus raphanistrum subsp. landra
FD555350       --> GTCTGCCCCCTGTGTAATCACTGTTGTCCTCTTGTATGTTC.........  Raphanus raphanistrum subsp. landra
FD536865       --> GTCTGCCCCCTGTGTAATCACGGTGGTCCTCTTGTATGTTCCTGTGGCCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969002       --> GTCTGCCCCCTGTGTAATCACGGTGGTCCTCTTGTATGTTCCTGTGGCCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969802       --> GTCTGCCCCCTGTGTAATCACGGTGGTCCTCTTGTATGTTCCTGTGGCCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV531013       --> GTCTGCCCCCTGTGTAATCACTGTTGTCCTCTTGTATGTTCCTGTGGCCT  Raphanus raphanistrum subsp. maritimus
EY934294       --> GTCTGCCCCCTGTGTAATCACGGTGGTCCTCTTGTATGTTCCTGTGGCAG  Raphanus sativus cv Early Scarlet Globe

               501    -    551
UN16472        --> TGGGCAACTGTGAAATCTTGATGGCTATTTGTTCCACATCTTCGGTCTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559688       <-- TGGGCAACTGTGAAATCTTGATGGCTATTTGTTCCACATCTTCGGTCTCC  Raphanus raphanistrum subsp. landra
FD540342       <-- ...gtAACTGTGAA-TCTTGATGGCTATTTGTTCCACATCTTCGGTCTCC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD559030       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY908795       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV526564       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD556973       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD973279       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974298       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD558537       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD554417       --> TGGGCAACTGTGAAATCTTGATGGCTAATTGTTCCACATCTTCGGTCTCC  Raphanus raphanistrum subsp. landra
FD553176       --> TGGGCAACTGTGAAATCTTGATGGCTATTTGTTCCACATCTTCGGTCTCC  Raphanus raphanistrum subsp. landra
FD960579       --> TGGGCAACTGTGAAATCTTGATGGCTATTTGTTCCACATCTTCGGTCTCC  Raphanus raphanistrum subsp. maritimus
EY919279       --> TGGGCAACTGTGAAATCTTGATGGCTATTTGTTCCACATCTTCGGTCTCC  Raphanus raphanistrum subsp. landra
EY920247       --> TGGGCAACTGTGAAATCTTGATGGCTATTTGTTCCACATCTTCGGTCTCC  Raphanus raphanistrum subsp. landra
FD555350       --> ..................................................  Raphanus raphanistrum subsp. landra
FD536865       --> TGGGTAACTGTGAAATCTTGATGGCTATTTGTTCCACATCTTCGGTCTCC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969002       --> TGGGTAACTGTGAAATCTTGATGGCTATTTGTTCCACATCTTCGGTCTCC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969802       --> TGGGTAACTGTGAAATCTTGATGGCTATTTGTTCCACATCTTCGGTCTCC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV531013       --> TGGGCAACTGTGAAATCTTGATGGCTATTTGTTCCACATCTTCGGTCTCC  Raphanus raphanistrum subsp. maritimus
EY934294       --> GGGGTAACTGAGAAATCTTGATGGCTATTTGTTCCACATCTTCGGTCTCC  Raphanus sativus cv Early Scarlet Globe

               551    -    601
UN16472        --> CAGCCATGAACCTT-GGAGAAGGTTCTTGCCTCTGTCTCATTGCCAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559688       <-- CAGCCATGAACCTT-GGAGAAGGTTCTTGCCTCTGTCTCATTGCCAAAAA
FD540342       <-- CAGCCATGAAC-TT-GGAGAAGGTTCTTGCGTCTGTCTCATTGCCAAAAA
FD559030       <-- ....................AGGTTCTTGCCTCTGTCTCATTGCCAAAAA
EY908795       <-- ...............................................AAA
EV526564       <-- ..................................................
FD556973       <-- ..................................................
FD973279       <-- ..................................................
FD974298       <-- ..................................................
FD558537       <-- ..................................................
FD554417       --> CAGCCATGAACCTT-GGAGAAGGTTCTTGCCTCTGTCTCATTGCCAAAAA
FD553176       --> CAGCCATGAACCTT-GGAGAAGGTTCTTGCCTCTGTCTCACTGCCAAAAA
FD960579       --> CAGCCATGAACCTT-GGAGAAGGTTCTTGCCTCTGTCTCATTGCCAAAAA
EY919279       --> CAGCCATGAACCTT-GGAGAAGGTTCTTGCCTCTGTCTCATTGCCAAAAA
EY920247       --> CAGCCATGAACCTT-GGAGAAGGTTCTTGCCTCTGTCTCATTGCCAAAAA
FD555350       --> ..................................................
FD536865       --> CAGCCATGAACCTT-GGAGAAGGTTCTTGCCTCTGTCTCATTGCCAAAAA
FD969002       --> CAGCCATGAACCTT-GG.................................
FD969802       --> CAGCCATGAACCTT-GGAGAAGGTTCTTGCCTCTGTCTCATTGCCAAAAA
EV531013       --> CAGCCATGAACCTTTGGAGAAGGTTCTTGCCTCTGTCTCATTGCCAAAAA
EY934294       --> CAGCCATGAAACTT-GGAGAAGGTTCTTGCCTCTGTCTCATTGTCAAAAA

               601    -    651
UN16472        --> CAAAGTCCATGTACGGCAAGAACTTCTCCTGCGCATCTTTGAAGAATTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559688       <-- CAAAGTCCATGTACGGCAAGAACTTCTCCTGCGCATCTTTGAAGAATTCA
FD540342       <-- CAAAGTCCATGTACGGCAAGAACTTCTCCTGCGCATCTTTGAAGAATTCA
FD559030       <-- CAAAGTCCATGTACGGCAAGAACTTCTC-TGCGCATCTTTGAAGAATTCA
EY908795       <-- CAAAGTCCATGTACGGCAAGAACTTCTC-TGCGCATCTT-GAAGAATTCA
EV526564       <-- ........ATGTACGGCAAGAACT-CT-CTGCGCATCTT-GAAGAATTCA
FD556973       <-- ................................GCATCTTTGAAGAATTCA
FD973279       <-- ........................................GAAGAATTCA
FD974298       <-- ..................................................
FD558537       <-- ..................................................
FD554417       --> CAAAGTCCATGTACGGCAAGAACTTCTCCTGCGCATCTTTGAAGAATTCA
FD553176       --> CAAAGTCCATGTACGGCAAGAACTTCTCCTGCGCATCTTTGAAGAATTCA
FD960579       --> CAAAGTCCATGTACGGCAAGAACTTCTCCTGCGCATCTTTGAAGAATTCA
EY919279       --> ..................................................
EY920247       --> CAAAGTCCATGTACAGCAAGAACTTCTCCTGCGCATCTTTGAAGAATTCA
FD555350       --> ..................................................
FD536865       --> CAAAGTCCATGTACGGCAAGAACTTCTCCTGCGCATCTTTGAAGAATTCA
FD969002       --> ..................................................
FD969802       --> CAAAGTCCATGTACGGCAAGAACTTCTCCTGCGCATCTTTGAAGAATTCA
EV531013       --> CAAAGTCCATGTACGGCAAGAACTTCTCCTGCGCATCTTTGAAGAATTCA
EY934294       --> CAAAGTCCATGTACGGCAAGAACTTCTCCTGCGCATCTTTGAAGAATTCA

               651    -    701
UN16472        --> CAGATGAATGGAGCAGAGAGGTTCATTGTGAACACCTTGTTGTTAGCAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559688       <-- CAGATGAATGGAGCAGAGAGGTTCATTGTGAACACCTTGTTGTTAGCAGC
FD540342       <-- CAGATGAATGGAGCAGAGAGGTTCATTGTGAACACCTTGTTGTTAGCAGC
FD559030       <-- CAGATGAATGGAGCAGAGAGGTTAATTGTGAACACCTTGTTGTTAGCAGC
EY908795       <-- CAGATGAATGGAGCAGAGAGGTTCATTGTGAACACTTTGTTGTTAGCAGC
EV526564       <-- CAGATGAATGGAGCAGAGAGGTTCATTGTGAACAC-TTGTTGTTAGCAGC
FD556973       <-- CAGATGAATGGAGCAGAGAGGTTCATTGTGAACACCTTGTTGTTAGCAGC
FD973279       <-- CAGATGAATGGAGCAGAGAGGTTCATTGTGAACAC-TTGTTGTTAGCAGC
FD974298       <-- .............CAGAGAGGTTCATTGTGAACAC-TTGTTGTTAGCAGC
FD558537       <-- ........................................TGTTAGCAGC
FD554417       --> CAGATGAATGGAG.....................................
FD553176       --> CAGATGAATGGAGCAGAGAGGTTCATTGTGAACACCTTGTTGTTAGCAGC
FD960579       --> CAGATGAATGGAGCAGAGAGGTTCATTGTGAACACCTTGTTGTTAGCAGC
EY919279       --> ..................................................
EY920247       --> CAGATGAATGGAGCAGAGAGGTTCATTGTGAACACCTTGTTGTTAGCAGC
FD555350       --> ..................................................
FD536865       --> CAGATGAATGGAGCAGAGAGGTTCATTGTGAACACCTTGTTGTTAGCAGC
FD969002       --> ..................................................
FD969802       --> CAGATGAATGGAGCAGAGAGGTTCATTGTGAACACCTTGTTGTTA.....
EV531013       --> CAGATGAATGGAGCAGAGAGGTTCATTGTGAACACCTTGTTGTTAGCAGC
EY934294       --> CAGATGAATGGAGCAGAGAGGTTCATTGTGAACACCTTGTTGTTAGCAGC

               701    -    751
UN16472        --> AGCGTGCTCAGATACCAACTGAATGGATTCGGGGGACACTGTGAGGAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559688       <-- AGCGTGCTCAGATACCAACTGAATGGATTCGGGGGACACTGTGAGGAAGA
FD540342       <-- AGCGTGCTCAGATACCAACTGAATGGATTCGGGGGACACTGTGAGGAAGA
FD559030       <-- AGCGTGCTCAGATACCAACTGAATGGATTCGGGGGACACTGTGAGGAAGA
EY908795       <-- AGCGTGCTCAGATACCAACTGAATGGATTCGGGGGACACTGTGAGGAAGA
EV526564       <-- AGCGTGCTCAGATACCAACTGAATGGATTCGGGGGACACTGTGAGGAAGA
FD556973       <-- AGCGTGCTCAGATACCAACTGAATGGATTCGGGGGACACTGTGAGGAAGA
FD973279       <-- AGCGTGCTCAGATACCAACTGAATGGATTCGGGGGACACTGTGAGGAAGA
FD974298       <-- AGCGTGCTCAGATACCAACTGAATGGATTCGGGGGACACTGTGAGGAAGA
FD558537       <-- AGCGTGCTCAGATACCAACTGAATGGATTCGGGGGACACTGTGAGGAAGA
FD554417       --> ..................................................
FD553176       --> ..................................................
FD960579       --> AGCGTGCTCAGATACCAACTGAATGGA.......................
EY919279       --> ..................................................
EY920247       --> AGCGTGCTCAGATACCAACTGAATGGATTCGGGGGACACTGTGAGGAAGA
FD555350       --> ..................................................
FD536865       --> AGCGTGCTCAGATACCAACTGAATGGATTCGGGGGACACTGTGAGGA...
FD969002       --> ..................................................
FD969802       --> ..................................................
EV531013       --> AGCGTGCTCAGATACCAACTGAATGGATTCGGGGGACACTGTGAGGAAGA
EY934294       --> AGCGTGCTCAGATACCAACTGAATGGATTCGGGGGAGACTGTGAGGAAGA

               751    -    801
UN16472        --> ATCCAGCAATGTAGTAGAACTTGGCCTTCTCAACC-AAAGCCCAGTTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559688       <-- ATCCAGCAATGTAGTAGAACTTGGCCTTCTCAACC-AAAGCCCAGTTTTC
FD540342       <-- ATCCAGCAATGTAGTAGAACTTGGCCTTCTCAACC-AAAGCCCAGTTTTC
FD559030       <-- ATCCAGCAATGTAGTAGAACTTGGCCTTCTCAACC-AAAGCCCAGTTTTC
EY908795       <-- ATCCAGCAATGTAGTAGAACTTGGCCTTCTCAACC-AAAGCCCAGTTTTC
EV526564       <-- ATCCAGCAATGTAGTAGAACTTGGCCTTCTCAACCCAAAGCCCAGTTTTC
FD556973       <-- ATCCAGCAATGTAGTAGAACTTGGCCTTCTCAACC-AAAGCCCAGTTTTC
FD973279       <-- ATCCAGCAATGTAGTAGAACTTGGCCTTCTCAACC-AAAGCCCAGTTTTC
FD974298       <-- ATCCAGCAATGTAGTAGAACTTGGCCTTCTCAACC-AAAGCCCAGTTTTC
FD558537       <-- ATCCAGCAATGTAGTAGAACTTGGCCTTCTCAACC-AAAGCCCAGTTTTC
FD554417       --> ..................................................
FD553176       --> ..................................................
FD960579       --> ..................................................
EY919279       --> ..................................................
EY920247       --> ATCCAGCAATGTAGTAGAACTTGGCCTTCTCA-CC-AAAGCCCAGTTTTC
FD555350       --> ..................................................
FD536865       --> ..................................................
FD969002       --> ..................................................
FD969802       --> ..................................................
EV531013       --> ATCCAGCAATGTAGTAGAACTTGGCCTTCTCAACC-AAAGCCCAGTTTTC
EY934294       --> ATCCAGCAATGTAGTAGAACTTGGCCTTCTCAACC-AATGCCCAGTT...

               801    -    851
UN16472        --> AGGCTTCTTAAGGTGCTCAA-CCTTGTAGCAGTTAGCAGCTGAAA-GATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559688       <-- AGGCTTCTTAAGGTGCTCAA-CCTTGTAGCAGTTAGCAGCTGAAA-GATT
FD540342       <-- AGGCTTCTTAAGGTGCTCAA-CCTTGTAGCAGTTAGCAGCTGAAA-GATT
FD559030       <-- AGGCTTCTTAAGGTGCTCAA-CCTTGTAGCAGTTAGCAGCTGAAA-GATT
EY908795       <-- AGGCTTCTTAAGGTGCTCAA-CCTTGTAGCAGTTAGCAGCTGAAA-GATT
EV526564       <-- AGGCTTCTTAAGGTGCTCAAACCTTGTAGCAGTTAGCAGCTGAAAAGATT
FD556973       <-- AGGCTTCTTAAGGTGCTCAA-CCTTGTAGCAGTTAGCAGCTGAAA-GATT
FD973279       <-- AGGCTTCTTAAGGTGCTCAA-CCTTGTGGCAGTTAGCAGCTGAAA-GATT
FD974298       <-- AGGCTTCTTAAGGTGCTCAA-CCTTGTGGCAGTTAGCAGCTGAAA-GATT
FD558537       <-- AGGCTTCTTAAGGTGCTCAA-CCTTGTAGCAGTTAGCAGCTGAAG-GATT
FD554417       --> ..................................................
FD553176       --> ..................................................
FD960579       --> ..................................................
EY919279       --> ..................................................
EY920247       --> AGGCTTCTTAAG-TGCTCA--CCTTGTAGCAGTTAGCAGCTGAA--GA-T
FD555350       --> ..................................................
FD536865       --> ..................................................
FD969002       --> ..................................................
FD969802       --> ..................................................
EV531013       --> AGGCTTCTTAAGGTGCTCAA-CCTTGTAGCAGTTAGCAGCTGAAA-GATT
EY934294       --> ..................................................

               851    -    901
UN16472        --> AGCAATAAGCGACCTCTCTCC-ACCAACAA-CACAGACACCGCAAGTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559688       <-- AGCAATAAGCGACCTCTCTCC-ACCAACAA-CACAGACACCGCAAGTTCC
FD540342       <-- AGCAATAAGCGACCTCTCTCC-ACCAACAA-CACAGACACCGCAAGTTCC
FD559030       <-- AGCAATAAGCGACCTCTCTCC-ACCAACAA-CACAGACACCGCAAGTTCC
EY908795       <-- AGCAATAAGCGACCTCTCTCC-ACCAACAA-CACAGACACCGCAAGTTCC
EV526564       <-- AGCAATAAGCGACCTCTCTCCCACCAACAAACACAGACACCGCAAGTTCC
FD556973       <-- AGCAATAAGCGACCTCTCTCC-ACCAACAA-CACAGACACCGCAAGTTCC
FD973279       <-- AGCAATAAGCGACCTCTCTCC-ACCAACAA-CACAGACACCGCAAGTTCC
FD974298       <-- AGCAATAAGCGACCTCTCTCC-ACCAACAA-CACAGACACCGCAAGTTCC
FD558537       <-- AGCAATAAGCGACCTCTCTCC-ACCAACAA-CACAGACACCGCAAGTTCC
FD554417       --> ..................................................
FD553176       --> ..................................................
FD960579       --> ..................................................
EY919279       --> ..................................................
EY920247       --> AGCAATAAGCGAC-TCTCTC--A-CAAC-A-CACAGACACCGCAAGTTCC
FD555350       --> ..................................................
FD536865       --> ..................................................
FD969002       --> ..................................................
FD969802       --> ..................................................
EV531013       --> AGCAATAAGCGACCTCTCTCC-ACCAACAA-CACAGACACCGCAAGTTCC
EY934294       --> ..................................................

               901    -    951
UN16472        --> AGTAGGTGCAGACTCATCCTCGTAGTAGTGAACATTGAGACCAGCAGCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559688       <-- AGTAGGTGCAGACTCATCCTCGTAGTAGTGc...................  Raphanus raphanistrum subsp. landra
FD540342       <-- AGTAGGTGCAGACTCATCCTCGTAGTAGTGAACATTGACACCAGCAGCAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD559030       <-- AGTAGGTGCAGACTCATCCTCGTAGTAGTGAACATTGAGACCAGCAGCAG  Raphanus raphanistrum subsp. landra
EY908795       <-- AGTAGGTGCAGACTCATCCTCGTAGTAGTGAACATTGACACCAGCAGCAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV526564       <-- AGTAGGTGCAGACTCATCCTCGTAGTAGTGAACATTGAGACCAGCAGCAG  Raphanus raphanistrum subsp. maritimus
FD556973       <-- AGTAGGTGCAGACTCATCCTCGTAGTAGTGAACATTGAGACCAGCAGCAG  Raphanus raphanistrum subsp. landra
FD973279       <-- AGTAGGTGCAGACTCATCCTCGTAGTAGTGAACATTGACACCAGCAGCAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974298       <-- AGTAGGTGCAGACTCATCCTCGTAGTAGTGAACATTGACACCAGCAGCAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD558537       <-- AGTAGGTGCAGACTCATCCTCGTAGTAGTGAACATTGAGACCAGCAGCAG  Raphanus raphanistrum subsp. landra
FD554417       --> ..................................................  Raphanus raphanistrum subsp. landra
FD553176       --> ..................................................  Raphanus raphanistrum subsp. landra
FD960579       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY919279       --> ..................................................  Raphanus raphanistrum subsp. landra
EY920247       --> AGTAG-TGCAGACTCATCCTCGTAGTAGTGAACAT-GAGAC-AGCAGCAG  Raphanus raphanistrum subsp. landra
FD555350       --> ..................................................  Raphanus raphanistrum subsp. landra
FD536865       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969002       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969802       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV531013       --> AGTAGGTGCAGACTCATCCTCGTAG.........................  Raphanus raphanistrum subsp. maritimus
EY934294       --> ..................................................  Raphanus sativus cv Early Scarlet Globe

               951    -   1001
UN16472        --> TAGCATCCTTCTTCATAGCCTCACCATATTTGTCCTTTCCAA-TGGAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559688       <-- ..................................................
FD540342       <-- TAGCATCCTTCTTCATAGCCTCACCATATTTGTCCTTTCCAA-TGGAACC
FD559030       <-- TAGCATCCTTCTTCATAGCCTCACCATATTTGTCCTTTCCAA-TGGAACC
EY908795       <-- TAGCATCCTTCTTCATAGCCTCACCATATTTGTCCTTTCCAA-TGGAACC
EV526564       <-- TAGCATCCTTCTTCATAGCCTCACCATATTTGTCCTTTCCAAATGGAACC
FD556973       <-- TAGCATCCTTCTTCATAGCCTCACCATATTTGTCCTTTCCAA-TGGAACC
FD973279       <-- TAGCATCCTTCTTCATAGCCTCACCATATTTGTCCTTTCCAA-TGGAACC
FD974298       <-- TAGCATCCTTCTTCATAGCCTCACCATATTTGTCCTTTCCAA-TGGAACC
FD558537       <-- TAGCATCCTTCTTCATAGCCTCACCATATTTGTCCTTTCCAA-TGGAACC
FD554417       --> ..................................................
FD553176       --> ..................................................
FD960579       --> ..................................................
EY919279       --> ..................................................
EY920247       --> TAG...............................................
FD555350       --> ..................................................
FD536865       --> ..................................................
FD969002       --> ..................................................
FD969802       --> ..................................................
EV531013       --> ..................................................
EY934294       --> ..................................................

               1001   -   1051
UN16472        --> CATGTAACTGGTTGCCCCAGGAA-TTTGAAGCATCCACTGAGCCACTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559688       <-- ..................................................
FD540342       <-- CATGTAACTGGTTGCCCCAGGAA-TTTGAAGCATCCACTGAGCCACTTTG
FD559030       <-- CATGTAACTGGTTGCCCCAGGAA-TTTGAAGCATCCACTGAGCCACTTTG
EY908795       <-- CATGTAACTGGTTGCCCCAGGAA-TTTGAAGCATCCACTGAGCCACTTTG
EV526564       <-- CATGTAACTGGTTGCCCCAGGAAATTTGAAGCATCCACTGAGCCACTTTG
FD556973       <-- CATGTAACTGGTTGCCCCAGGAA-TTTGAAGCATCCACTGAGCCACTTTG
FD973279       <-- CATGTAACTGGTTGCCCCAGGAA-TTTGAAGCATCCACTGAGCCACTTTG
FD974298       <-- CATGTAACTGGTTGCCCCAGGAA-TTTGAAGCATCCACTGAGCCACTTTG
FD558537       <-- CATGTAACTGGTTGCCCCAGGAA-TTTGAAGAATCCACTGAGCCACTTTG
FD554417       --> ..................................................
FD553176       --> ..................................................
FD960579       --> ..................................................
EY919279       --> ..................................................
EY920247       --> ..................................................
FD555350       --> ..................................................
FD536865       --> ..................................................
FD969002       --> ..................................................
FD969802       --> ..................................................
EV531013       --> ..................................................
EY934294       --> ..................................................

               1051   -   1101
UN16472        --> ATTGAGTTCTGAGTAGCACCTCCGGCAATGTATTCAACATTGAACTTGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559688       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD540342       <-- ATTGAGTTCTGAGTAGCACCTCCGGCAATGTATTCAACATTGAACTTGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD559030       <-- ATTGAGTTCTGAGTAGCACCTCCGGCAATGTATTCAACAGTGAACTTGCT  Raphanus raphanistrum subsp. landra
EY908795       <-- ATTGAGTTCTGAGTAGCACCTCCGGCAATGTATTCAACATTGAACTTGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV526564       <-- ATTGAGTTCTGAGTAGCACCTCCGGCAATGTATTCAACAGTGAACTTGCT  Raphanus raphanistrum subsp. maritimus
FD556973       <-- ATTGAGTTCTGAGTAGCACCTCCGGCAATGTATTCAACAGTGAACTTGCT  Raphanus raphanistrum subsp. landra
FD973279       <-- ATTGAGTTCTGAGTAGCACCTCCGGCAATGTATTCAACATTGAACTTGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974298       <-- ATTGAGTTCTGAGTAGCACCTCCGGCAATGTATTCAACATTGAACTTGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD558537       <-- ATTGAGTTCTGAGTAGCACCTCCGGCAATGTATTCAACAGTGAGCTTGCT  Raphanus raphanistrum subsp. landra
FD554417       --> ..................................................  Raphanus raphanistrum subsp. landra
FD553176       --> ..................................................  Raphanus raphanistrum subsp. landra
FD960579       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY919279       --> ..................................................  Raphanus raphanistrum subsp. landra
EY920247       --> ..................................................  Raphanus raphanistrum subsp. landra
FD555350       --> ..................................................  Raphanus raphanistrum subsp. landra
FD536865       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969002       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969802       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV531013       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY934294       --> ..................................................  Raphanus sativus cv Early Scarlet Globe

               1101   -   1151
UN16472        --> ACTCATCTCTTCATACATGGGCAAATGTTTCTCCTCGGCGAGAATAGCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559688       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD540342       <-- ACTCATCTCTTCATACATGGGCAAATGTTTCTCCTCGGCGAGAATAGCAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD559030       <-- ACTCATCTCATCATACATGGGCAAATGTTTCTCCTCGGCGAGAATAGCAT  Raphanus raphanistrum subsp. landra
EY908795       <-- ACTCATCTCTTCATACATGGGCAAATGTTTCTCCTCGGCGAGAATAGCAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV526564       <-- ACTCATCTCATCATACATGGGCAAATGTTTCTCCTCGGCGAGAATAGCAT  Raphanus raphanistrum subsp. maritimus
FD556973       <-- ACTCATCTCATCATACATGGGCAAATGTTTCTCCTCGGCGAGAATAGCAT  Raphanus raphanistrum subsp. landra
FD973279       <-- ACTCATCTCTTCATACATGGGCAAATGTTTCTCCTCGGCGAGAATAGCAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974298       <-- ACTCATCTCTTCATACATGGGCAAATGTTTCTCCTCGGCGAGAATAGCAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD558537       <-- ACTCATCTCATCATACATGGGCAAATGTTTCTCCTCGGCGAGAATAGCAT  Raphanus raphanistrum subsp. landra
FD554417       --> ..................................................  Raphanus raphanistrum subsp. landra
FD553176       --> ..................................................  Raphanus raphanistrum subsp. landra
FD960579       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY919279       --> ..................................................  Raphanus raphanistrum subsp. landra
EY920247       --> ..................................................  Raphanus raphanistrum subsp. landra
FD555350       --> ..................................................  Raphanus raphanistrum subsp. landra
FD536865       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969002       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969802       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV531013       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY934294       --> ..................................................  Raphanus sativus cv Early Scarlet Globe

               1151   -   1201
UN16472        --> TGTTCAACTTGACGTCGTACTTGGTGAGAAATGCCTCGTCGACGACGGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559688       <-- ..................................................
FD540342       <-- TGTTCAACTTGACGTCGTACTTGGTGAGAAATGCCTCGTCGACGACGGCA
FD559030       <-- TGTTCAACTTGACGTCGTACTTGGTGAGAAATGCCTCGTCGACGACGGCA
EY908795       <-- TGTTCAACTTGACGTCGTACTTGGTGAGAAATGCCTCGTCGACGACGGCA
EV526564       <-- TGTTCAACTTGACGTCGTACTTGGTGAGAAATGCCTCGTCGACGACGGCA
FD556973       <-- TGTTCAACTTGACGTCGTACTTGGTGAGAAATGCCTCGTCGACGACGGCA
FD973279       <-- TGTTCAACTTGACGTCGTACTTGGTGAGAAATGCCTCGTCGACGACGGCA
FD974298       <-- TGTTCAACTTGACGTCGTACTTGGTGAGAAATGCCTCGTCGACGACGGCA
FD558537       <-- TGTTCAACTTGACGTCGTACTTGGTGAGAAATGCCTCGTCGACGACGGCA
FD554417       --> ..................................................
FD553176       --> ..................................................
FD960579       --> ..................................................
EY919279       --> ..................................................
EY920247       --> ..................................................
FD555350       --> ..................................................
FD536865       --> ..................................................
FD969002       --> ..................................................
FD969802       --> ..................................................
EV531013       --> ..................................................
EY934294       --> ..................................................

               1201   -   1251
UN16472        --> GAGATGTCGAGGAGTGGGTTGCCCATTCCGAGAAGGATTCCATCGTAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559688       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD540342       <-- GAGATGTCGAGGAGTGGGTTGCCCATTCCGAGAAGGATTC..........  Raphanus raphanistrum subsp. raphanistrum (MS)
FD559030       <-- GAGATGTCGAGGAGTGGGTTCCCCATTCCGAGAAGGATTCCATCGTAGTT  Raphanus raphanistrum subsp. landra
EY908795       <-- GAGATGTCGAGGAGTGGGTTGCCCATTCCGAGAAGGATTCCATCGTAGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV526564       <-- GAGATGTCGAAGAGTGGGTTCCCCATTCCGAGAAGGATTCCATCGTAGTT  Raphanus raphanistrum subsp. maritimus
FD556973       <-- GAGATGTCGAGGAGTGGGTTCCCCATTCCGAGAAGGATTCCATCGTAGTT  Raphanus raphanistrum subsp. landra
FD973279       <-- GAGATGTCGAGGAGTGGGTTGCCCATTCCGAGAAGGATTCCATCGTAGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974298       <-- GAGATGTCGAGGAGTGGGTTGCCCATTCCGAGAAGGATTCCATCGTAGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD558537       <-- GAGATGTCGAGGAGTGGGTTCCCCATTCCGAGAAGGATTCCATCGTAGTT  Raphanus raphanistrum subsp. landra
FD554417       --> ..................................................  Raphanus raphanistrum subsp. landra
FD553176       --> ..................................................  Raphanus raphanistrum subsp. landra
FD960579       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY919279       --> ..................................................  Raphanus raphanistrum subsp. landra
EY920247       --> ..................................................  Raphanus raphanistrum subsp. landra
FD555350       --> ..................................................  Raphanus raphanistrum subsp. landra
FD536865       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969002       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969802       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV531013       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY934294       --> ..................................................  Raphanus sativus cv Early Scarlet Globe

               1251   -   1301
UN16472        --> GTTAGTGGAAGCCATTTCGATGAATCTGAGAAGAGACGTTTAGATTCAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559688       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD540342       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD559030       <-- GTTAGTGGAAGCCATTTCGATGAATCTGAGAAGAGACGTTTAGATTCAGA  Raphanus raphanistrum subsp. landra
EY908795       <-- GTTAGTGGAAGCCATTTCGATGAATCTGAGAAGAGAAGTTTAGATTCAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV526564       <-- GTTAGTGGAAGCCATTTCGATGAATCTGAGAAGAGACGTTTAGATTCAGT  Raphanus raphanistrum subsp. maritimus
FD556973       <-- GTTAGTGGAAGCCATTTCGATGAATCTGAGAAGAGACGTTTAGATTCAGA  Raphanus raphanistrum subsp. landra
FD973279       <-- GTTAGTGGAAGCCATTTCGATGAATCTGAGAAGAGAAGTTTAGATTCAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974298       <-- GTTAGTGGAAGCCATTTCGATGAATCTGAGAAGAGAAGTTTAGATTCAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD558537       <-- GTTAGTGGAAGCCATTTCGATGAATCTGAGAAGAGACGTTTAGATTCAGA  Raphanus raphanistrum subsp. landra
FD554417       --> ..................................................  Raphanus raphanistrum subsp. landra
FD553176       --> ..................................................  Raphanus raphanistrum subsp. landra
FD960579       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY919279       --> ..................................................  Raphanus raphanistrum subsp. landra
EY920247       --> ..................................................  Raphanus raphanistrum subsp. landra
FD555350       --> ..................................................  Raphanus raphanistrum subsp. landra
FD536865       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969002       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969802       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV531013       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY934294       --> ..................................................  Raphanus sativus cv Early Scarlet Globe

               1301   -   1351
UN16472        --> TCTGATGAGGAGGGCAAGTTTAAGTGGGTGAGTGTGAAGGCGTCTGTTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559688       <-- ..................................................
FD540342       <-- ..................................................
FD559030       <-- TCTGATGAGGAGGGCAAGTTTcc...........................
EY908795       <-- TCTGATGAcc........................................
EV526564       <-- TCTGATGAG.........................................
FD556973       <-- TCTGATGAGGAGGGCAAGTTTAAGTGGGTGAGTGTGAAGGCGTCTGTTTA
FD973279       <-- TCTGATGAGGAGGGGGAGTTTAAGTGGGTGAGTGTGAAGGCGTCTGTTTA
FD974298       <-- TCTGATGAGGAGGGGGAGTTTAAGTGGGTGAGTGTGAAGGCGTCTGTTTA
FD558537       <-- TCTGATGAGGAGGGCAAGTTTAAGTGGGTGAGTGTGAAGGCGTCTGTTTA
FD554417       --> ..................................................
FD553176       --> ..................................................
FD960579       --> ..................................................
EY919279       --> ..................................................
EY920247       --> ..................................................
FD555350       --> ..................................................
FD536865       --> ..................................................
FD969002       --> ..................................................
FD969802       --> ..................................................
EV531013       --> ..................................................
EY934294       --> ..................................................

               1351   -   1401
UN16472        --> TAATCAAAGAGCTCCCAGAAAGTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559688       <-- ..........................
FD540342       <-- ..........................
FD559030       <-- ..........................
EY908795       <-- ..........................
EV526564       <-- ..........................
FD556973       <-- TAATCAAAGAGCTCAGAGAAAGTTCC
FD973279       <-- TAATCAAAGAGCTCCC..........
FD974298       <-- TAATCAAAGAGCTCCC..........
FD558537       <-- Tcc.......................
FD554417       --> ..........................
FD553176       --> ..........................
FD960579       --> ..........................
EY919279       --> ..........................
EY920247       --> ..........................
FD555350       --> ..........................
FD536865       --> ..........................
FD969002       --> ..........................
FD969802       --> ..........................
EV531013       --> ..........................
EY934294       --> ..........................