Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN16629

               1      -     51
UN16629        --> AGGGGAAGTCCACCGCCTGCTACTCGGAGCTCCCCAGCTCACCAGTCTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532155       <-- ..................................................
FD566032       <-- ..................................................
EX752448       <-- ..................................................
EX900109       <-- ..................................................
EY936433       <-- ..................................................
EY939080       --> AGGGGAAGTCCACCGCCTGCTACTCGGAGCTCCCCAGCTCACCAGTCTTG
EX748545       --> ..................................................
EY940713       --> ..................................................

               51     -    101
UN16629        --> GCACTGGCTCCTTTAAACATGATAATCAGTCCGAGCGAGAGCAAGAGCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532155       <-- ..................................................
FD566032       <-- ..................................................
EX752448       <-- ..................................................
EX900109       <-- ..................................................
EY936433       <-- ..................................................
EY939080       --> GCACTGGCTCCTTTAAACATGATAATCAGTCCGAGCGAGAGCAAGAGCAA
EX748545       --> ..................................................
EY940713       --> ..................................................

               101    -    151
UN16629        --> GAACCCGATTACGCCTCTGCTTTCCGTGCTTGTAAATCTGTAGTTTGCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532155       <-- ..................................................
FD566032       <-- ..................................................
EX752448       <-- ..................................................
EX900109       <-- ..................................................
EY936433       <-- ..................................................
EY939080       --> GAACCCGATTACGCCTCTGCTTTCCGTGCTTGTAAATCTGTAGTTTGCCT
EX748545       --> ..................................................
EY940713       --> ..................................................

               151    -    201
UN16629        --> TTCGGGTTTCAGGGAGTTAATGCCTGAGTACCTTCCTGCTATCTTACCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532155       <-- ..................................................
FD566032       <-- ..................................................
EX752448       <-- ..................................................
EX900109       <-- ..................................................
EY936433       <-- ..................................................
EY939080       --> TTCGGGTTTCAGGGAGTTAATGCCTGAGTACCTTCCTGCTATCTTACCCG
EX748545       --> ..................................................
EY940713       --> ..................................................

               201    -    251
UN16629        --> TCTGCGCAAATCTTACCTCTCTCAATTTCAGTTATGCTAACATTTCTCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532155       <-- ..................................................
FD566032       <-- ..................................................
EX752448       <-- ..................................................
EX900109       <-- ..................................................
EY936433       <-- ..................................................
EY939080       --> TCTGCGCAAATCTTACCTCTCTCAATTTCAGTTATGCTAACATTTCTCCT
EX748545       --> ..................................................
EY940713       --> ..................................................

               251    -    301
UN16629        --> GACATGTTTAAGCCCATCATCCACACTTGCCACAAACTCCAGGTTTTCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532155       <-- ..................................................
FD566032       <-- ..................................................
EX752448       <-- ..................................................
EX900109       <-- ..................................................
EY936433       <-- ..................................................
EY939080       --> GACATGTTTAAGCCCATCATCCACACTTGCCACAAACTCCAGGTTTTCTG
EX748545       --> ..................................................
EY940713       --> ..................................................

               301    -    351
UN16629        --> GGCTCTGGATTCGATATGTGATGAAGGACTGCAGGCAGTTGCTGCGACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532155       <-- ..................................................
FD566032       <-- ..................................................
EX752448       <-- ..................................................
EX900109       <-- ..................................................
EY936433       <-- ..................................................
EY939080       --> GGCTCTGGATTCGATATGTGATGAAGGACTGCAGGCAGTTGCTGCGACTT
EX748545       --> ..................................................
EY940713       --> ..................................................

               351    -    401
UN16629        --> GCAAGGAACTCCGTGAGCTCCGGATCTTCCCTTTTGATCCCCGAGAAGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532155       <-- ..................................................
FD566032       <-- ..................................................
EX752448       <-- ..................................................
EX900109       <-- ..................................................
EY936433       <-- ..................................................
EY939080       --> GCAAGGAACTCCGTGAGCTCCGGATCTTCCCTTTTGATCCCCGAGAAGAC
EX748545       --> ..................................................
EY940713       --> ..................................................

               401    -    451
UN16629        --> AGTGAAGGTCCTGTCTCTGAATTAGGCCTACAAGCAGTCTCCGAGGGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532155       <-- ..................................................
FD566032       <-- ..................................................
EX752448       <-- ..................................................
EX900109       <-- ..................................................
EY936433       <-- ..................................................
EY939080       --> AGTGAAGGTCCTGTCTCTGAATTAGGCCTACAAGCAGTCTCCGAGGGTTG
EX748545       --> ..................................................
EY940713       --> ..................................................

               451    -    501
UN16629        --> TAGAAAACTTGAATCTGTTCTCTACTTTTGCCAGCGCATGACTAATGCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532155       <-- ..................................................
FD566032       <-- ..................................................
EX752448       <-- ..................................................
EX900109       <-- ..................................................
EY936433       <-- ..................................................
EY939080       --> TAGAAAACTTGAATCTGTTCTCTACTTTTGCCAGCGCATGACTAATGCCG
EX748545       --> ......................................gGACTAATGCCG
EY940713       --> ..................................................

               501    -    551
UN16629        --> CCCTGATAGCCATGTCACATAACTGTCCTGAGCTTACTGTGTTCAGGCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532155       <-- ..................................................
FD566032       <-- ..................................................
EX752448       <-- ..................................................
EX900109       <-- ..................................................
EY936433       <-- ..................................................
EY939080       --> CCCTGATAGCCATGTCACATAACTGTCCTGAGCTTACTGTGTTCAGGCTC
EX748545       --> CCCTGATAGCCATGTCACATAACTGTCCTGAGCTTACTGTGTTCAGGCTC
EY940713       --> ..................................................

               551    -    601
UN16629        --> TGCATAATGGGTCGACATAGGCCTGACCATGTGACAGGAAAGGCTATGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532155       <-- .......................................AAGGCTATGGA
FD566032       <-- ...............................................tGA
EX752448       <-- ..................................................
EX900109       <-- ..................................................
EY936433       <-- ..................................................
EY939080       --> TGCATAATGGGTCGACATAGGCCTGACCATGTGACAGGAAAGGCTATGGA
EX748545       --> TGCATAATGGGTCGACATAGGCCTGACCATGTGACAGGAAAGGCTATGGA
EY940713       --> ..................................................

               601    -    651
UN16629        --> CGAGGGTTTTGGTGCCATTGTTAAAAACTGCAAGAAACTAACTCGGCTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532155       <-- CGAGGGTTTTGGTGCCATTGTTAAAAACTGCAAGAAACTAACTCGGCTCG
FD566032       <-- CGAGGGTTTTGGTGCCAT-G-TAAAAACTGCAAGAAACTAACTCGGCTCG
EX752448       <-- CGAGGGTTTTGGTGCCATTGTTAAAAACTGCAAGAAACTAACTCGGCTCG
EX900109       <-- ..................................................
EY936433       <-- ..................................................
EY939080       --> CGAGGGTTTTGGTGCCATTGTTAAAAACTGCAAGAAACTAACTCGGCTCG
EX748545       --> CGAGGGTTTTGGTGCCATTGTTAAAAACTGCAAGAAACTAACTCGGCTCG
EY940713       --> ..................................................

               651    -    701
UN16629        --> CCGTCTCCGGGTTGCTTACGGATCAAGCTTTTAGGTATATGGGTGAGTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532155       <-- CCGTCTCCGGGTTGCTTACGGATCAAGCTTTTAGGTATATGGGTGAGTAT
FD566032       <-- CCGTGTCCGGGTTGCTTACGGATCAAGCTTTTAGGTATATGGGTGAGTAT
EX752448       <-- CCGTCTCCGGGTTGCTTACGGATCAAGCTTTTAGGTATATGGGTGAGTAT
EX900109       <-- ............................TTTTAGGTATATGGGTGAGTAT
EY936433       <-- ..................................................
EY939080       --> CCGTGTCCGGGTTGCTTACGGATCAAGCTT....................
EX748545       --> CCGTCTCCGGGTTGCTTACGGATCAAGCTTTTAGGTATATGGGTGAGTAT
EY940713       --> ..................................................

               701    -    751
UN16629        --> GGGAAACTGATCCGTACTCTGTCAGTAGCTTTTGCAGGGGACAGTGACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532155       <-- GGGAAACTGATCCGTACTCTGTCAGTAGCTTTTGCAGGGGACAGTGACAT
FD566032       <-- GGGAAACTGATCCGTACTCTGTCAGTAGCTTTTGCAGGGGACAGTGACAT
EX752448       <-- GGGAAACTGATCCGTACTCTGTCAGTAGCT--TGCAGGGGACAGTGACAT
EX900109       <-- GGGAAACTGATCCGTACACTGTCAGTAGCTTTTGCAGGGGACAGTGACAT
EY936433       <-- ..................................................
EY939080       --> ..................................................
EX748545       --> GGGAAACTGATCCGTACTCTGTCAGTAGCTT--GCAGGGGACAGTGACAT
EY940713       --> ..................................................

               751    -    801
UN16629        --> GGCTCTGAGACATGTCCTCGAAGGTTGCCCTAGACTACAGAAACTCGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532155       <-- GGCTCTGAGACATGTCCTCGAAGGTTGCCCTAGACTACAGAAACTCGAGA
FD566032       <-- GGCTCTGAGACATGTCCTCGAAGGTTGCCCTAGACTACAGAAACTCGAGA
EX752448       <-- GGCTCTGAGACATGTCCTCGAAGGTTGCCCTAGACTACAGAAACTCGAGA
EX900109       <-- GGCTCTGAGACATGTCCTCGAAGGTTGCCCTAGACTACAGAAACTCGAGA
EY936433       <-- ...................GAAGGTTGCCCTAGACTACAGAAACTCGCGA
EY939080       --> ..................................................
EX748545       --> GGCTCTGAGACATGTCCTCGAAGGTTGCCCTAGACTACAGAAACTCGAGA
EY940713       --> ...................GAAGGTTGCCCTAGACTACAGAAACTCGCGA

               801    -    851
UN16629        --> TAAGAGACAGTCCGTTTGGGGATGTTGCGTTACGCTCTGGTATGCATCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532155       <-- TAAGAGACAGTCCGTTTGGGGATGTTGCGTTACGCTCTGGTATGCACCGG
FD566032       <-- TAAGAGACAGTCCGTTTGGGGATGTTGCGTTACGCTCTGGTATGCATCGG
EX752448       <-- TAAGAGACAGTCCGTTTGGGGATGTTGCGTTACGCTCTGGTATGCATCGG
EX900109       <-- TAAGAGACAGTCCGTTTGGGGATGTTGCGTTACGCTCTGGTATGCATCGG
EY936433       <-- TAAGAGACAGTCCGTTTGGGGATGTTGCGTTACGCTCTGGTATGCATCGG
EY939080       --> ..................................................
EX748545       --> TAAGAGACAGTCCGTTTGGGGATGTTGCGTTACGCTCTGGTATGCATCGG
EY940713       --> TAAGAGACAGTCCGTTTGGGGATGTTGCGTTACGCTCTGGTATGCATCGG

               851    -    901
UN16629        --> TATTACAACATGAGGTTTGTTTGGATGTCGGCGTGCAAGCTGTCTATGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532155       <-- TATTACAACATGAGGTTTGTTTGGATGTCGGCGTGCAAGCTGTCTATGGG
FD566032       <-- TATTACAACATGAGGTTTGTTTGGATGTCGGCATGCAGCTTGTCTATGGG
EX752448       <-- TATTACAACATGAGGTTTGTTTGGATGTCGGCGTGCAAGCTGTCTATGGG
EX900109       <-- TATTACAACATGAGGTTTGTTTGGATGTCGGCGTGCAAGCTGTCTATGGG
EY936433       <-- TATTACAACATGAGGTTTGTTTGGATGTCGGCGTGCAAGCTGTCTATGGG
EY939080       --> ..................................................
EX748545       --> TATTACAACATGAGGTTTGTTTGGATGTCGGCGTGCAAGCTGTCTATGGG
EY940713       --> TATTACAACATGAGGTTTGTTTGGATGTCGGCGTGCAAGCTGTCTATGGG

               901    -    951
UN16629        --> ATGTTGCAAGGATGTTGCACGTGCAATGCCAAATCTTGTTGTGGAAGTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532155       <-- ATGTTGCAAGGATGTTGCACGTGCAATGCCAAATCTTGTTGTGGAAGTAA
FD566032       <-- ATGCTGCAAGGATGTTGCACGTGCAATGCCAAATCTAGTTGTGGAAGTAA
EX752448       <-- ATGTTGCAAGGATGTTGCACGTGCAATGCCAAATCTTGTTGTGGAAGTAA
EX900109       <-- ATGCTGCAAGGATGTTGCACGTGCAATGCCAAATCTAGTTGTGGAAGTAA
EY936433       <-- ATGTTGCAAGGATGTTGCACGTGCAATGCCAAATCTTGTTGTGGAAGTAA
EY939080       --> ..................................................
EX748545       --> ATGTTGCAAGGATGTTGCACGTGCAATGCCAAATCTTGTTGTGGAAGTAA
EY940713       --> ATGTTGCAAGGATGTTGCACGTGCAATGCCAAATCTTGTTGTGGAAGTAA

               951    -   1001
UN16629        --> TTGGTTCGGATGATGATGATGAGAATAGGGAGTTTGTTGAGACTTTATAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532155       <-- TTGGTTCGGATGATGATGATGAGAATAGGGAGTTTGTTGAGACTTTATAC
FD566032       <-- TTGGTTCGGATGATGATGATGAGAATAGGGAGTTTGTTGAGACTTTATAC
EX752448       <-- TTGGTTCGGATGATGATGATGAGAATAGGGAGTTTGTTGAGACCTTATAC
EX900109       <-- TTGGTTCGGATGATGATGATGAGAATAGGGAGTTTGTTGAGACTTTATAC
EY936433       <-- TTGGTTCGGATGATGATGATGAGAATAGGGAGTTTGTTGAGACTTTATAC
EY939080       --> ..................................................
EX748545       --> TTGGTTCGGATGATGATGATGAGAATAGGGAGTTTGTTGAGACCTTATAC
EY940713       --> TTGGTTCGGATGATGATGATGAGAATAGGGAGTTTGTTGAGACTTTATAC

               1001   -   1051
UN16629        --> ATGTATCGGTCTCTTGATGGTCCAAGGAAAGATGCACCACAGTTTGTCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532155       <-- ATGTATCGGTCTCTTGATGGTCCAAGGAAAGATGCACCACAGTTTGTCAC
FD566032       <-- ATGTATCGGTCTCTTGATGGTCCAAGGAAAGATGCACCACAGTTTGTCAC
EX752448       <-- ATGTATCGGTCTCTTGGTGGTCCAAGGAAAGATGCACCACAGTTTGTCAC
EX900109       <-- ATGTATCGGTCTCTTGATGGTCCAAGGAAAGATGCACCACAGTTTGTCAC
EY936433       <-- ATGTATCGGTCTCTTGATGGTCCAAGGAAAGATGCACCACAGTTTGTCAC
EY939080       --> ..................................................
EX748545       --> ATGTATCGGTCTCTTGGTGGTCCAAGGAAAGATGCACCACAGTTTGTCAC
EY940713       --> ATGTATCGGTCTCTTGATGGTCCAAGGAAAGATGCACCACAGTTTGTCAC

               1051   -   1101
UN16629        --> AATTTTATAGGAAAGAGGAGCCTTTTCGTGTGTTGCTGAGAGAGCTTAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532155       <-- AATTTTATAGGAAAGAGGAGCCTTTTCGTGTGTTGCTGAGAGAGCTTAAA  Raphanus raphanistrum subsp. maritimus
FD566032       <-- AATTTTATAGGAAATAGGAGCCTTTTCGTGTGTTGCTGAGAGAGCTTAAA  Raphanus sativus var. oleiformis
EX752448       <-- AATTTTATAGGAAAGAGGAGCCTTTTCGTGTGTTGCTGAGAGAGCTTAAA  Raphanus raphanistrum subsp. maritimus
EX900109       <-- AATTTTATAGGAAAGAGGAGCACTTTCGTGTGTTGCTGA--GTGCTTAAA  Raphanus sativus cv Early Scarlet Globe
EY936433       <-- AATTTTATAGGAAAGAGGAGCATTTTCTTGTGTTGCTGAGAGAGCTTAAA  Raphanus sativus cv Early Scarlet Globe
EY939080       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX748545       --> AATTTTATAGGAAAGAGGAGCCTTTTCGTGTGTTGCTGAGAGAGCTTAAA  Raphanus raphanistrum subsp. maritimus
EY940713       --> AATTTTATAGGAAAGAGGAGCATTTTCTTGTGTTGCTGAGAGAGCTTAAA  Raphanus sativus cv Early Scarlet Globe

               1101   -   1151
UN16629        --> GAGGGGAGAATGAGAATGGGTTGGGGTAGGAATGCTGAAGATGATGATGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532155       <-- GAGGGGAGAATGAGAATGGGTTGGGGTAGGAATGCTGAAGATGATGATGG  Raphanus raphanistrum subsp. maritimus
FD566032       <-- GAGGTGAGAATGAGAATGGGTTGGGGTAGGAATGCTGAAGATGATGATGG  Raphanus sativus var. oleiformis
EX752448       <-- GAGGGGAGAATGAGAATGGGTTGGGGTAGGAATGCTGAAGATGATGATGG  Raphanus raphanistrum subsp. maritimus
EX900109       <-- GAGGGGAGAATGAGAATGGGTTGGTGTAGGAATGCTGAAGATGATGATGG  Raphanus sativus cv Early Scarlet Globe
EY936433       <-- GAGGGGAGAATGAGAATGGGTTGGTGTAGGAATGCTGAAGATGATGATGG  Raphanus sativus cv Early Scarlet Globe
EY939080       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX748545       --> GAGGGGAGAATGAGAATGGGTTGGGGTAGGAATGCTGAAGATGATGATGG  Raphanus raphanistrum subsp. maritimus
EY940713       --> GAGGGGAGAATGAGAATGGGTTGGTGTAGGAATGCTGAAGATGATGATGG  Raphanus sativus cv Early Scarlet Globe

               1151   -   1201
UN16629        --> TGGTGGCGTCAGAGACAAAATGCATGATGGTTGATGATGA---TGATGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532155       <-- TGGTGGCGTCAGAGACAAGATGCATGATGGTTGATGATGA---TGATGAT  Raphanus raphanistrum subsp. maritimus
FD566032       <-- TGGTGGCGTCAGAGACAAAATGCATGATGGTTGATGATGA---TGATGAT  Raphanus sativus var. oleiformis
EX752448       <-- TGGTGGCATCAGAGACAAAATGCATGATGGTTGATGATGA---TGATGAT  Raphanus raphanistrum subsp. maritimus
EX900109       <-- TGGTGGCGTCAGAGACAAAATGCATGATGGTTGATAATGAGGATGATGAT  Raphanus sativus cv Early Scarlet Globe
EY936433       <-- TGGTGGCGTCAGAGACAAAGTGCATGATGGTTGATAATGAGGATGATGAT  Raphanus sativus cv Early Scarlet Globe
EY939080       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX748545       --> TGGTGGCATCAGAGACAAA-TGCATGATGGTTGATGATGA---TGATGAT  Raphanus raphanistrum subsp. maritimus
EY940713       --> TGGTGGCGTCAGAGACAAAGTGCATGATGGTTGATAATGAGGATGATGAT  Raphanus sativus cv Early Scarlet Globe

               1201   -   1251
UN16629        --> ---AGTTGCGAAGGGCATAATGCATGATTGTTGTACCATTATTTATTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532155       <-- ---AGTTGCGAAGGGCATAATGCATGATTGTTGTACCATTATTTATTTTC
FD566032       <-- GATAGTTGCGAAGGGCATAATGCATGATTGTTGTACCATTATTTATTTCC
EX752448       <-- ---AGTTGCGAAGGGCATAATGCATGATTGTTGTACCATTATTTATTTTC
EX900109       <-- ---AGTTGCGAAGGGCATAATGCATGATTGTTGTACCATTATTTATTTTC
EY936433       <-- ---AGTTGCGAAGGGCATAATGCATGATTGTTGTACCATTATTTATTTTC
EY939080       --> ..................................................
EX748545       --> ---AGTTGCGAAGG-CATAATGCATGATTGTTGTACCATTATTTATTT-C
EY940713       --> ---AGTTGCGAAGGGCATAATGCATGATTGTTGTACCATTATTTATTTTC

               1251   -   1301
UN16629        --> ATTTCTTTTTTTTTTCTTCTTTAAAGTTCTTGGTTGGTTAGGTGGAACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532155       <-- ATTTCTTTTTTTTTTCTTCTTTAAAGTTCTTGGTTGGTTAGGTGGAACAA
FD566032       <-- ATTTTTTTTTTTTTT--CC-TTAAAGTTCTTGGT-GGTTAGGTGGAACAA
EX752448       <-- ATTTCTTTTTTTTTTCTTCTTTAAAGTTCTTGGTTGGTTAGGTGGAACAA
EX900109       <-- ATTTCTTTT-----TTTTCTTTAAAGTTCTTCGTTGGTTAGGTGGAACAA
EY936433       <-- ATTTCTTTTTT-----TTTTTTAAAGTTCTTCGTTGGTTAGGTGGAACAA
EY939080       --> ..................................................
EX748545       --> ATTTCTTTTTTTT--CTTCTTTAA..........................
EY940713       --> ATTTCTTTTTTTTTTttaaagttcttcgttggt.................

               1301   -   1351
UN16629        --> TGGATGTATGTTTTGGGGGAGTATCGTTGTTAGTTAGACAGATGAGTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532155       <-- TGGATGTATGTTTTGGGGGAGTATCGTTGTTAGTTAGACAGATGAGTTGG
FD566032       <-- TGGATGTATGTTTTGGGGGAGTATCGTTGTTAGTTAGACAGATGAGTTGG
EX752448       <-- TGGATGTATGTTTTGGGGGAGTATCGTTGTTAGTTAGACAGATGAGTTGG
EX900109       <-- TGGATGTATGTTTGGGGGGAGTATCGTTGTTAGTTAGACAGATGAGCTGG
EY936433       <-- TGGATGTATGTTTGGGGGGAGTATCGTTGTTAGTTAGACAGATGAGCTGG
EY939080       --> ..................................................
EX748545       --> ..................................................
EY940713       --> ..................................................

               1351   -   1401
UN16629        --> TTCTTATGTTTCTAATAAGCTGCACTTTTGGATCGATCTTTCTAGTTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532155       <-- TTCTTATGTTTCTAATAATCTGCACTTTTGGATCGATCTTTCTAGTTGTT
FD566032       <-- TTCTTATGTTTCTAATAAGCTGCACTTTTGGATCGATCTTTCTAGTTGTT
EX752448       <-- TTCTTATGCTTCTAATAAGCTGCACTTTTGGAc.................
EX900109       <-- TTCTTATGTTTCTAATAAGCTGCACTTTTGGATCGATCTTTCTAGTTGTC
EY936433       <-- TTCTTATGTTTCTAATAAGCTGCACTTTTGGATCGATCTTTCTAGTTGTT
EY939080       --> ..................................................
EX748545       --> ..................................................
EY940713       --> ..................................................

               1401   -   1451
UN16629        --> GTTTAGAACTAATGAGACGTCTTTCCATTTTCAATTAATTTGAGATATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532155       <-- GTTTAGAACTAATGAGACGTCTTTCCATTTTCAATTAATTTGAGATATTT
FD566032       <-- GTTTAGAACTAATGAGACGTCTTTCCATTTTCAATTAATTTGAGATATTT
EX752448       <-- ..................................................
EX900109       <-- GTTTAGAACTAATGAGACGTCTTTCCACTTTCAATTAATTTGAGATATTT
EY936433       <-- GTTTAGAACTAATGAGACGTCTTTCCACTTTCg.................
EY939080       --> ..................................................
EX748545       --> ..................................................
EY940713       --> ..................................................

               1451   -   1501
UN16629        --> CATCTGAATCCGTT
                   ~~~~~~~~~~~~~~
EV532155       <-- CATCc.........
FD566032       <-- CATttg........
EX752448       <-- ..............
EX900109       <-- CATCTGAATCCGTT
EY936433       <-- ..............
EY939080       --> ..............
EX748545       --> ..............
EY940713       --> ..............