1      -     51
UN16630        --> GGGGACGACCAATGGATGTGTAATGAGAACCCCACACACCCATCGAAACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY911841       <-- ..................................................
FD983125       <-- ..................................................
FD547252       <-- ..................................................
EY918073       <-- ..................................................
FD567824       <-- ..................................................
FD982692       <-- ..................................................
EY922031       --> GGGGACGACCAATGGATGTGTAATGAGAACCCCACACACCCATCGAAACG
FD986434       --> ..................................................
FD986989       --> ..................................................
EY916110       --> ..................................................
FD564307       --> ..................................................
FY430064       --> ..................................................
FD939505       --> ..................................................
FD551350       --> ..................................................

               51     -    101
UN16630        --> CTTGGCTCTCAAAACATTTCGACTTCTATTTATTATTTAAAGATATTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY911841       <-- ..................................................
FD983125       <-- ..................................................
FD547252       <-- ..................................................
EY918073       <-- ..................................................
FD567824       <-- ..................................................
FD982692       <-- ..................................................
EY922031       --> CTTGGCTCTCAAAACATTTCGACTTCTATTTATTATTTAAAGATATTTCT
FD986434       --> ..................................................
FD986989       --> ..................................................
EY916110       --> ..................................................
FD564307       --> ..................................................
FY430064       --> ..................................................
FD939505       --> ..................................................
FD551350       --> ..................................................

               101    -    151
UN16630        --> TCCCTTCATTGCTTCTCCATCTTTCTCTTTTTCTTTCTTCTCTCTCGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY911841       <-- ..................................................
FD983125       <-- ..................................................
FD547252       <-- ..................................................
EY918073       <-- ..................................................
FD567824       <-- ..................................................
FD982692       <-- ..................................................
EY922031       --> TCCCTTCATTGCTTCTCCATCTTTCTCTTTTTCTTTCTTCTCTCTCGAAG
FD986434       --> ...........................TTTTTCTTTCTTCTCTCTCGAAG
FD986989       --> ...........................TTTTTCTTTCTTCTCTCTCGAAG
EY916110       --> .......................................CTCTCTCGAAG
FD564307       --> .......................................CTCTCTCGAAG
FY430064       --> ..................................................
FD939505       --> ..................................................
FD551350       --> ..................................................

               151    -    201
UN16630        --> TTTCATTGGATCAGAAAAAA-----GAAAGGTGTCTATCAACTTGGTAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY911841       <-- ..................................................
FD983125       <-- ..................................................
FD547252       <-- ..................................................
EY918073       <-- ..................................................
FD567824       <-- ..................................................
FD982692       <-- ..................................................
EY922031       --> TTTCATTGGATCAGAAAAAA-----GAAAGGTGTCTATCAACTTGGTAAT
FD986434       --> TTTCATTGGATCAGAAAAAA-----GAAAGGTGTCTATCAACTTGGTAAT
FD986989       --> TTTCATTGGATCAGAAAAAA-----GAAAGGTGTCTATCAACTTGGTAAT
EY916110       --> TTTCTTTGGATCAGAAAAAAAAAAAGAAAGGTGTCTATCAACTTGGTAAT
FD564307       --> TTTCTTTGGATCAGAAAAAAAAAAAGAAAGGTGTCTATCAACTTGGTAAT
FY430064       --> ......TGGATCAGAAAAAA-----GAAAGGTGTCTATCAACTTGTTAAT
FD939505       --> ................................ggCTATCAACTTGGTAAT
FD551350       --> ..................................................

               201    -    251
UN16630        --> TAAAAATGGCGTACGAGGAGAACTTTCAGAAAACTTCCGGACCCAAGTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY911841       <-- ..................................................
FD983125       <-- ..................................................
FD547252       <-- ..................................................
EY918073       <-- ..................................................
FD567824       <-- ..................................................
FD982692       <-- ..................................................
EY922031       --> TAAAAATGGCGTACGAGGAGAACTTTCAGAAAACTTCCGGACCCAAGTAT
FD986434       --> TAAAAATGGCGTACGAGGAGAACTTTCAGAAAACTTCCGGACCCAAGTAT
FD986989       --> TAAAAATGGCGTACGAGGAGAACTTTCAGAAAACTTCCGGACCCAAGTAT
EY916110       --> TAAAAATGGCGTACGAGGAGAACTTTCAGAAAACTTCCGGACCCAAGTAT
FD564307       --> TAAAAATGGCGTACGAGGAGAACTTTCAGAAAACTTCCGGACCCAAGTAT
FY430064       --> TAAAAATGGCGTACGAGGAAAACTTTCAGAAAACTTCCGGACCCAAGTAT
FD939505       --> TAAAAATGGCGTACGAGGAGAACTTTCAGAAAACTTCCGGACCCAAGTAT
FD551350       --> ..................................................

               251    -    301
UN16630        --> GATTGTCTTTTATTCGATATAGATGATACTCTTTACCCTTTCAGTTCTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY911841       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD983125       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD547252       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY918073       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD567824       <-- ..................................................  Raphanus sativus var. oleiformis
FD982692       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY922031       --> GATTGTCTTTTGTTTGATATAGATGATACTCTTTACCCTTTCAGTTCTGG  Raphanus raphanistrum subsp. landra
FD986434       --> GATTGTCTTTTGTTTGATATAGATGATACTCTTTACCCTTTCAGTTCTGG  Raphanus raphanistrum subsp. landra
FD986989       --> GATTGTCTTTTGTTTGATATAGATGATACTCTTTACCCTTTCAGTTCTGG  Raphanus raphanistrum subsp. landra
EY916110       --> GATTGTCTTTTATTCGATATAGATGATACTCTTTACCCTTTCAGTTCTGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD564307       --> GATTGTCTTTTATTCGATATAGATGATACTCTTTACCCTTTCAGTTCTGG  Raphanus sativus var. oleiformis
FY430064       --> GATTGTCTTTTATTCGATATAGATGATACTCTTTACCCTTTCAGTTCTGG  Raphanus sativus cv GSK3-1
FD939505       --> GATTGTCTTTTATTCGATATAGATGATACTCTTTACCCTTTCAGTTCTGG  Raphanus sativus var. oleiformis
FD551350       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               301    -    351
UN16630        --> TCTCGCTACGCTTGTTAAAAACAACATTCAAGAGTATATGACCCAGAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY911841       <-- ..................................................
FD983125       <-- ..................................................
FD547252       <-- ..................................................
EY918073       <-- ..................................................
FD567824       <-- ..................................................
FD982692       <-- ..................................................
EY922031       --> TCTCGCTACGCTTGTTAAAAACAACATTCAAGAGTATATGACCCAGAAAC
FD986434       --> TCTCGCTACGCTTGTTAAAAACAACATTCAAGAGTATATGACCCAGAGAC
FD986989       --> CCTCGCTACGCTTGTTAAAAACAACATTCAAGAGTATATGACCCAGAAAC
EY916110       --> TCTCGCTACGCTTGTTAAAAACAACATTCAAGAGTATATGACCCAGAAAC
FD564307       --> TCTCGCTACGCTTGTTAAAAACAACATTCAAGAGTATATGACCCAGAAAC
FY430064       --> TCTCGCTACGCTTGTTAAAAACAACATTCAAGAGTATATGACCCAGAAAC
FD939505       --> TCTCGCTACGCTTGTTAAAAACAACATTCAAGAGTATATGACCCAGAAAC
FD551350       --> ..................................................

               351    -    401
UN16630        --> TTGGTATTGAAGAAGATAAAGTCCAAGAACTTTGTCTTTCGCTTTACAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY911841       <-- ..................................................
FD983125       <-- ..................................................
FD547252       <-- ..................................................
EY918073       <-- ..................................................
FD567824       <-- ..................................................
FD982692       <-- ..................................................
EY922031       --> TTGGTATTGAAGAAGATAAAGTCCAAGAACTTTGTCTTTCGCTTTACAAA
FD986434       --> TTGGTATTGAAGAAGATAAAGTCCAAGAACTTTGTCTTTCGCTTTACAAA
FD986989       --> TTGGTATTGAAGAAGATAAAGTCCAAGAACTTTGTCTTTCGCTTTACAAA
EY916110       --> TTGGTATTGAAGAAGATAAAGTCCAAGAACTTTGTCTTTCGCTTTACAAA
FD564307       --> TTGGTATTGAAGAAGATAAAGTCCAAGAACTTTGTCTTTCGCTTTACAAA
FY430064       --> TTGGTATTGAAGAAGATAAAGTCCAAGAACTTTGTCTTTCGCTTTACAAA
FD939505       --> TTGGTATTGAAGAAGATAAAGTCCAAGAACTTTGTCTTTCGCTTTACAAA
FD551350       --> ......................gCAAGAACTTTGTCTTTCGCTTTACAAA

               401    -    451
UN16630        --> ATCTATGGAACTACTATGGCTGGTCTCAAGGCTGTGGGTTATGACTTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY911841       <-- ............ACTATGGCTG-TCTCAAGGCTGTGGGTTATGACTTTGA
FD983125       <-- ..................................................
FD547252       <-- ..................................................
EY918073       <-- ..................................................
FD567824       <-- ..................................................
FD982692       <-- ..................................................
EY922031       --> ATCTATGGAACTACTATGGCTGGTCTCAAGGCTGTTGGTTATGACTTTGA
FD986434       --> ATCTATGGAACTACTATGGCTGGTCTCAAGGCTGTTGGTTATGACTTTGA
FD986989       --> ATCTATGGAACTACTATGGCTGGTCTCAAGGCTGTTGGTTATGACTTTGA
EY916110       --> ATCTATGGAACTACTATGGCTGGTCTCAAGGCTGTGGGTTATGACTTTGA
FD564307       --> ATCTATGGAACTACTATGGCTGGTCTCAAGGCTGTGGGTTATGACTTTGA
FY430064       --> ATCTATGGAACTACTATGGCTGGTCTCAAGGCTGTGGGTTATGACTTTGA
FD939505       --> ATCT--GGAACTACTATGGCTGGTCTCAAGGCTGTGGGTTATGACTTTGA
FD551350       --> ATCTATGGAACTACTATGGCTGGTCTCAAGGCTGTGGGTTATGACTTTGA

               451    -    501
UN16630        --> CTATGACGATTTCCATCGTTTTGTTCATGGGAGATTGCCATACGCAACAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY911841       <-- CTATGACGATTTCCATCGTTTTGTTCATGGGAGATTGCCATACGCAACAC
FD983125       <-- .....................TGTTCATGGGAGATTGCCATACGCAACAC
FD547252       <-- ..................................................
EY918073       <-- ..................................................
FD567824       <-- ..................................................
FD982692       <-- ..................................................
EY922031       --> CTATGACGATTTCCATCGTTTTGTTCATGGGAGATTGCCATACGCAACAC
FD986434       --> CTATGACGATTTCCATCGTTTTGTTCATGGGAGATTGCCATACGCAACAC
FD986989       --> CTATGACGATTTCCATCGTTTTGTTCATGGGAGATTGCCATACGCAACAC
EY916110       --> CTATGACGATTTCCATCGTTTTGTTCATGGGAGATTGCCATACGCAACAC
FD564307       --> CTATGACGATTTCCATCGTTTTGTTCATGGGAGATTGCCATACGCAACAC
FY430064       --> CTATGACGATTTCCATCGTTTTGTTCATGGGAGATTGCCATACGCAACAC
FD939505       --> CTATGACGATTTCCATCGTTTTGTTCATGGGAGATTGCCATACACAACAC
FD551350       --> CTATGACGATTTCCATCGTTTTGTTCATGGGAGATTGCCATACGCAACAC

               501    -    551
UN16630        --> TCAAGCCTGACCCTGTTCTGAGGAACATTATTCTCAGCTTGCCTATTCGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY911841       <-- TCAAGCCTGACCCTGTTCTGAGGAACATTATTCTCAGCTTGCCTATTCGC
FD983125       <-- TCAAGCCTGACCCTGTTCTGAGGAACATTATTCTCAGCTTGCCTATTCGC
FD547252       <-- ..................TGAGGAACATTATTCTCAGCTTGCCTATTCGC
EY918073       <-- ........................ACATTATTCTCAGCTTGCCTATTCGC
FD567824       <-- ..................................................
FD982692       <-- ..................................................
EY922031       --> TCAAGCCTGACCCTGTTCTGAGGAACATTATTCTCAGCTTGCCTATTCGC
FD986434       --> TCAAGCCTGACCCTGTTCTGAGGAACATTATTCTCAGCTTGCCTATTCGC
FD986989       --> TCAAGCCTGACCCTGTTCTGAGGAACATTATTCTCAGCTTGCCTATTCGC
EY916110       --> TCAAGCCTGACCCTGTTCTGAGGAACATTATTCTCAGCTTGCCTATTCGC
FD564307       --> TCAAGCCTGACCCTGTTCCGAGGAACATTATTCTCAGCTTGCCTATTCGC
FY430064       --> TCAAGCCTGACCCTGTTCTGAGGAACATTATTCTCAGCTTGCCTATTCGC
FD939505       --> TCAAGCCTGACCCTGTTCTGAGGAACATTATTCTCAGCTTGCCTATTCGC
FD551350       --> TCAAGCCTGACCCTGTTCTGAGGAACATTATTCTCAGCTTGCCTATTCGC

               551    -    601
UN16630        --> AAAGTGGTTTTCACCAATGCAGACAAGGCTCATGCAGCCAAGATCATTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY911841       <-- AAAGTGGTATTCACCAATGCAGACAAGGCTCATGCAGCCAAGATCATTG-  Raphanus raphanistrum subsp. raphanistrum (NY)
FD983125       <-- AAAGTTGTTTTCACTAATGCAGACAAGGCTCATGCAGCCAAGATCATTGG  Raphanus raphanistrum subsp. landra
FD547252       <-- AAAGTGGTATTCACCAATGCAGACAAGGCTCATGCAGCCAAGATCATTG-  Raphanus raphanistrum subsp. raphanistrum (NY)
EY918073       <-- AAAGTTGTTTTCACTAATGCAGACAAGGCTCATGCAGCCAAGATCATTGG  Raphanus raphanistrum subsp. landra
FD567824       <-- ..................................................  Raphanus sativus var. oleiformis
FD982692       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY922031       --> AAAGTTGTTTTCACTAATGCAGACAAGGCTCATGCAGCCAAGATCATTGG  Raphanus raphanistrum subsp. landra
FD986434       --> AAAGTTGTTTTCACTAATGCAGACAAGGCTCATGCAGCCAAGATCATTGG  Raphanus raphanistrum subsp. landra
FD986989       --> AAAGTTGTTTTCACTAATGCAGACAAGGCTCATGCAGCCAAGATCATTGG  Raphanus raphanistrum subsp. landra
EY916110       --> AAAGTGGTATTCACCAATGCAGACAAGGCTCATGCAGCCAAGATCATTG-  Raphanus raphanistrum subsp. raphanistrum (NY)
FD564307       --> AAAGTGGTATTCACCAATGCAGACAAGGCTCATGCAGCCAAGATCATTG-  Raphanus sativus var. oleiformis
FY430064       --> AAAGTGGTTTTCACAAATGCAGACAAGGCTCATGCAGCCAAGATCATTG-  Raphanus sativus cv GSK3-1
FD939505       --> AAAGTGGTATTCACCAATGCAGACAAGGCTCATGCAGCCAAGATCATTG-  Raphanus sativus var. oleiformis
FD551350       --> AAAGTGGTATTCACCAATGCAGACAAGGCTCATGCAGCCAAGATCATTG-  Raphanus raphanistrum subsp. raphanistrum (NY)

               601    -    651
UN16630        --> CTAGGCTAGGCCTAGAGGACTGCTTTGAAAGAATCATATCTTTCGAGACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY911841       <-- CTAGGCTAGGCCTAGAGGACTGCTTTGAAAGAATCATATCTTTCGAGACT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD983125       <-- C-AGGCTAGGCCTAGAGGACTGCTTTGAAAGAATCATATCTTTCGAGACT  Raphanus raphanistrum subsp. landra
FD547252       <-- CTAGGCTAGGCCTAGAGGACTGCTTTGAAAGAATCATATCTTTCGAGACT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY918073       <-- C-AGGCTAGGCCTAGAGGACTGCTTTGAAAGAATCATATCTTTCGAGACT  Raphanus raphanistrum subsp. landra
FD567824       <-- ..................................................  Raphanus sativus var. oleiformis
FD982692       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY922031       --> C-AGGCTAGGCCTAGAGGACTGCTTTGAAAGAATCATATCTTTCGAGACT  Raphanus raphanistrum subsp. landra
FD986434       --> C-AGGCTAGGCCTAGAGGACTGCTTTGAAAGAATCATATCTTTCGAGACT  Raphanus raphanistrum subsp. landra
FD986989       --> C-AGGCTAGGCCTAGAGGACTGCTTTGAAAGAATCATATCTTTCGAGACT  Raphanus raphanistrum subsp. landra
EY916110       --> CTAGGCTAGGCCTAGAGGACTGCTTTGAAAGAATCATATCTTTCGAGACT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD564307       --> CTAGGCTAGGCCTAGAGGACTGCTTTGAAAGAATCATATCTTTCGAGACT  Raphanus sativus var. oleiformis
FY430064       --> CTAGGCTAGGCCTAGAGGACTGCTTTGAAAGAATCATATCTTTCGAGACT  Raphanus sativus cv GSK3-1
FD939505       --> CTAGGCTAGGCCTAGAGGACTGCTTTGAAAGAATCATATCTTTCGAGACT  Raphanus sativus var. oleiformis
FD551350       --> CTAGGCTAGGCCTAGAGGACTGCTTTGAAAGAATCATATCTTTCGAGACT  Raphanus raphanistrum subsp. raphanistrum (NY)

               651    -    701
UN16630        --> CTCAACCCAAACACCAAAACTGAATCTCCTGTTGCTGCTAGTAAAACCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY911841       <-- CTCAACCCAAACACCAAAACTGAATCTCCTGTTGCTGCTAGTAAAACCAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD983125       <-- CTCAACCCCATCACCAAAACCGAATCTCCTGTTGCTGCTAGTAAAACCAG  Raphanus raphanistrum subsp. landra
FD547252       <-- CTCAACCCAAACACCAAAACTGAATCTCCTGTTGCTGCTAGTAAAACCAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY918073       <-- CTCAACCCCATCACCAAAACCGAATCTCCTGTTGCTGCTAGTAAAACCAG  Raphanus raphanistrum subsp. landra
FD567824       <-- ..................................................  Raphanus sativus var. oleiformis
FD982692       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY922031       --> CTCAACCCCATCACCAAAACCGAATCTCCTGTTGCTGCTAGTAAAACCAG  Raphanus raphanistrum subsp. landra
FD986434       --> CTCAACCCCATCACCAAAACCGAATCTCCTGTTGCTGCTAGTAAAACCAG  Raphanus raphanistrum subsp. landra
FD986989       --> CTCAACCCCATCACCAAAACCGAATCTCCTGTTGCTGCTAGTAAAACCAG  Raphanus raphanistrum subsp. landra
EY916110       --> CTCAACCCAAACACCAAAACTGAATCTCCTGTTGCTGCTAGTAAAACCAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD564307       --> CTCAACCCAAACACCAAAACTGAATCTCCTGTTGCTGCTAGTAAAACCAG  Raphanus sativus var. oleiformis
FY430064       --> CTCAACCCAAACACCAAAACTGAATCTCCTGTTGCTGCTAGTAAAACCAG  Raphanus sativus cv GSK3-1
FD939505       --> CTCAACCCAAACACCAAAACTGAATCTCCTGTTGCTGCTAGTAAAACCAG  Raphanus sativus var. oleiformis
FD551350       --> CTCAACCCAAACACCAAAACTGAATCTCCTGTTGCTGCTAGTAAAACCAG  Raphanus raphanistrum subsp. raphanistrum (NY)

               701    -    751
UN16630        --> AGAGATCTTCGACATAAGCAGTTACATGGCAAATCCTGACCCAAGCGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY911841       <-- AGAGATCTTCGACATAAGCAGTTACATGGCAAATCCTGACCCAAGCGTTG
FD983125       <-- AGAGGTCTTCGACATAAGCAGTTACATGGCAAATCCTGACCCAAGCGTTG
FD547252       <-- AGAGATCTTCGACATAAGCAGTTACATGGCAAATCCTGACCCAAGCGTTG
EY918073       <-- AGAGATCTTCGACATAAGCAGTTACATGGCAAATCCTGACCCAAGCGTTG
FD567824       <-- .......TTCGACATAAGCAGTTACATGGCAAATCCTGACCCAAGCGTTG
FD982692       <-- ..................................................
EY922031       --> AGAGATCTTCGACATAAGCAGTTACATGGCAAATCCTGACC-AAGCGTTG
FD986434       --> AGAGATCTTCGACATAAGCAGTTACATGGCAAATCCTGACCCAAGCGTTG
FD986989       --> AGAGGTCTTCGACATAAGCAGTTACATGGCAAATCCTGACCCAAGCGTTG
EY916110       --> AGAGATCTTCGACATAAGCAGTTACATGGCAAATCCTGACCCAAGCGTTG
FD564307       --> AGAGATCTTCGACATAAGCAGTTACATGGCAAATCCTGACCCAAGCGTTG
FY430064       --> AGAGATCTTCGACATAAGCAGTTACATGGCAAATCCTGACCCAAGCGTTG
FD939505       --> AGAGATCTTCGACATAAGCAGTTACATGGCAAATCCTGACCCAAGCGTTG
FD551350       --> AGAGATCTTCGACATAAGCAGTTACATGGCAAATCCTGACCCAAGCGTTG

               751    -    801
UN16630        --> AACTCCCAAAGACTCCGGTTGTTTGTAAACCATCTGAAGGAGCATTCGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY911841       <-- AACTCCCAAAGACTCCGGTTGTTTGTAAACCATCTGAAGGAGCATTCGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD983125       <-- AACTCCCTAAGACTCCGGTTGTTTGTAAACCATCTGAAGGAGCATTCGAA  Raphanus raphanistrum subsp. landra
FD547252       <-- AACTCCCAAAGACTCCGGTTGTTTGTAAACCATCTGAAGGAGCATTCGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY918073       <-- AACTCCCTAAGACTCCGGTTGTTTGTAAACCATCTGAAGGAGCATTCGAA  Raphanus raphanistrum subsp. landra
FD567824       <-- AACTCCCAAAGACTCCGGTTGTTTGTAAACCATCTGAGGGAGCATTCGAA  Raphanus sativus var. oleiformis
FD982692       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY922031       --> AACTCCCTAAGACTCCGGT-GTTTGTAA-CCATC................  Raphanus raphanistrum subsp. landra
FD986434       --> A-CTCCCTAAGACTCCGGTTGTTTGTAAACCATCTGAAG-AGCATTCGAA  Raphanus raphanistrum subsp. landra
FD986989       --> AACTCCCTAAGACTCCGGTTGTTTGTAAACCATCTGAAG-AGCATTCGAA  Raphanus raphanistrum subsp. landra
EY916110       --> AACTCCCAAAGACTCCGGTTGTTTGTAAACCATCTGAAG-AGCATTCGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD564307       --> AACTCCCAAAGACTCCGGTTGTTTGTAAACCATCTGAGGGAGCATTCGAA  Raphanus sativus var. oleiformis
FY430064       --> AACTCCCTAAGACTCCGGTTGTTTGTAAACCATCTGAAGGTGCATTCGAA  Raphanus sativus cv GSK3-1
FD939505       --> AACTCCCAAAGACTCCGGTTGTTTGTAAACCATCTGAAGGAGCATTCGAA  Raphanus sativus var. oleiformis
FD551350       --> AACTCCCAAAGACTCCGGTTGTTTGTAAACCATCTGAAGGAGCATTCGAA  Raphanus raphanistrum subsp. raphanistrum (NY)

               801    -    851
UN16630        --> CAGGTTTTCAAGATGACCAACATCAATCCTCACAAGACATTGTTCTTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY911841       <-- CAGGTTTTCAAGATGACCAACATCAATCCTCACAAGACATTGTTCTTTGA
FD983125       <-- CAGGTTTTCAAGATGACCAACATCAATCCTCACAAGACATTGTTCTTTGA
FD547252       <-- CAGGTTTTCAAGATGACCAACATCAATCCTCACAAGACATTGTTCTTTGA
EY918073       <-- CAGGTTTTCGAGATGACCAACATCAATCCTCACAAGACATTGTTCTTTGA
FD567824       <-- CAGGTTTTCAAGATGACCAACATCAATCCTCACAAGACATTGTTCTTTGA
FD982692       <-- ..................................................
EY922031       --> ..................................................
FD986434       --> CAG-TTTTCAAGATGAC-AACATCAATCCTCACA-GACATTGTTCTTTGA
FD986989       --> CACGTTTTCAAGATGACCAACATCAATCCTCACAAGACATTGTTCTTTGA
EY916110       --> CAG-TTTTCA-GATGACCAACATCAATCCTCACAAGACATTGTTCTTTGA
FD564307       --> CAGGTTTTCAAGATGAC-AACATCAATCCTCACAAGACATTGTTCTTTGA
FY430064       --> CAGGTTTTCAAGATGACCAACATCAACCCTCACAAGACATTGTTCTTTGA
FD939505       --> CAGGTTTTCAAGATGACCAACATCAATCCTCACAAGACATTGTTCTTTGA
FD551350       --> CAGGTTTTCAAGATGACCAACATCAATCCTCACAAGACATTGTTCTTTGA

               851    -    901
UN16630        --> TGACAGCATCCGTAACATTCAAACCGGGAAACGTGTGGGTCTCCACACTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY911841       <-- TGACAGCATCCGTAACATTCAAACCGGGAAACGTGTGGGTCTCCACACTG
FD983125       <-- TGACAGCATCCGTAACATTCAAACCGGGAAACGTGTGGGTCTCCACACTG
FD547252       <-- TGACAGCATCCGTAACATTCAAACCGGGAAACGTGTGGGTCTCCACACTG
EY918073       <-- TGACAGCATCCGTAACATTCAAACCGGGAAACGTGTGGGTCTCCACACTG
FD567824       <-- TGACAGCATCCGTAACATTCAAACCGGGAAACGTGTGGGTCTCCACACTG
FD982692       <-- ..................................................
EY922031       --> ..................................................
FD986434       --> TGACAGCATCCGT.....................................
FD986989       --> TGACAGCATCCGTAACATTCAA............................
EY916110       --> TGACAGCATCCGTAACATcaa.............................
FD564307       --> TGACAGCATCCGTAACAT-C-AACCGGGAAACGTGTGGGTCT........
FY430064       --> TGACAGCATCCGTAACATTCAAACCGGGAAACGTGTGGGTCTCCACACTG
FD939505       --> TGACAGCATCCGTAACATTCAAACCGGGAAACGTGTGGGTCTCCACACTG
FD551350       --> TGACAGCATCCGTAACATTCAAACCGGGAAACGTGTGGGTCTCCACACTG

               901    -    951
UN16630        --> TATGGGTTGGGACCTCACACAAAGCTGAAGGGGTGGATATTGCGTTGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY911841       <-- TATGGGTTGGGACCTCACACAAAGCTGAAGGGGTGGATATTGCGTTGGAG
FD983125       <-- TATGGGTTGGGACCTCACACAAAGCTGAAGGAGTGGATATTGCGTTGGAG
FD547252       <-- TATGGGTTGGGACCTCACACAAAGCTGAAGGGGTGGATATTGCGTTGGAG
EY918073       <-- TATGGGTTGGGACCTCACACAAAGCTGAAGGAGTGGATATTGCGTTGGAG
FD567824       <-- TATGGGTTGGGACCTCACACAAAGCTGAAGGGGTGGATATTGCGTTGGAG
FD982692       <-- ..................................................
EY922031       --> ..................................................
FD986434       --> ..................................................
FD986989       --> ..................................................
EY916110       --> ..................................................
FD564307       --> ..................................................
FY430064       --> TATGGGTTGGGACCTCACACAAAGCGGAAGGGGTGGATATTGCACTGGAG
FD939505       --> TATGGGTTGGGACCTCACACAAAGC.........................
FD551350       --> TATGGGTTGGGACCTCACACAAAGCTGAAGGGGTGGATATTGCGTTGGAG

               951    -   1001
UN16630        --> CATATTCACAACATACGTGAAGCTTTTCCTGAACTGTGGG-ATGCTGCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY911841       <-- CATATTCACAACATACGTGAAGCTTTTCCTGAACTGTGGG-ATGCTGCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD983125       <-- CATATTCACAACATACGTGAAGCTTTTCCTGAACTGTGGG-ATGCTGTTG  Raphanus raphanistrum subsp. landra
FD547252       <-- CATATTCACAACATACGTGAAGCTTTTCCTGAACTGTGGG-ATGCTGCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY918073       <-- CATATTCACAACATACGTGAAGCTTTTCCTGAACTGTGGG-ATGCTGTTG  Raphanus raphanistrum subsp. landra
FD567824       <-- CATATTCACAACATACGTGAAGCTTTTCCTGAACTGTGGG-ATGCTGCTG  Raphanus sativus var. oleiformis
FD982692       <-- .ATATTCACAACATACGTGAAGCTTTTCCTGAACTGTGGGGATGCTGTTG  Raphanus raphanistrum subsp. landra
EY922031       --> ..................................................  Raphanus raphanistrum subsp. landra
FD986434       --> ..................................................  Raphanus raphanistrum subsp. landra
FD986989       --> ..................................................  Raphanus raphanistrum subsp. landra
EY916110       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD564307       --> ..................................................  Raphanus sativus var. oleiformis
FY430064       --> CATATTCACAACATACGTGAAGCTTTTCCTGAACTGTGGG-ATGCTGCTG  Raphanus sativus cv GSK3-1
FD939505       --> ..................................................  Raphanus sativus var. oleiformis
FD551350       --> CATATTCACAACATACGTGAAGCTTTTCCTGAACTGTGGG-ATGCTGCTG  Raphanus raphanistrum subsp. raphanistrum (NY)

               1001   -   1051
UN16630        --> ACGACAAAGCCGAGGAGATTAGAGCCAGGCAGAAGGTTGCCATTGAAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY911841       <-- ACGACAAAGCCGAGGAGATTAGAGCCAGGCAGAAGGTTGCCATTGAAACC
FD983125       <-- ACGACAAAGCCGAGGAGATTAGAGCCAGGCAGAAGGTTGCCATTGAAACC
FD547252       <-- ACGACAAAGCCGAGGAGATTAGAGCCAGGCAGAATGTTGCCATTGAAACC
EY918073       <-- ACGACAAAGCCGAGGAGATTAGAGCCAGGCAGAAGGTTGCCATTGAAACC
FD567824       <-- ACGACAAAGCCGAGGAGATTAGAGCCAGGCAGAAGGTTGCCATTGAAACC
FD982692       <-- ACGACAAAGCCGAGGAGATTAGAGCCAGGCAGAAGGTTGCCATTGAAACC
EY922031       --> ..................................................
FD986434       --> ..................................................
FD986989       --> ..................................................
EY916110       --> ..................................................
FD564307       --> ..................................................
FY430064       --> ACGACAAAGCCGAGGA..................................
FD939505       --> ..................................................
FD551350       --> ACGACAAAGCCGAGGAGATTAGAGCCAGGCAGAATGTTGCCATTGAAACC

               1051   -   1101
UN16630        --> ATAGCTTAAAACAAACATTTCATTTCAGCTGCTGATAGTAACACATTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY911841       <-- ATAGCTTAAAACAAACATTTCATTTCAGCTGCTGATAGTAACACATTTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD983125       <-- ATAGCTTAAAACAAACATTTCATTTCAGCTGCTGATAGTTACACATTTCT  Raphanus raphanistrum subsp. landra
FD547252       <-- ATAGCTTAAAACAAACATTTCATTTCAGCTGCTGATAGTAACACATTTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY918073       <-- ATAGCTTAAAACAAACATTTCATCTCAGCTGCTGATAGTTACACATTTCT  Raphanus raphanistrum subsp. landra
FD567824       <-- ATAGCTTAAAACAAACATTTCATTTCAGCTGCTGATAGTAACACATTTTT  Raphanus sativus var. oleiformis
FD982692       <-- ATAGCTTAAAACAAACATTTCATTTCAGCTGCTGATAGTTACACATTTCT  Raphanus raphanistrum subsp. landra
EY922031       --> ..................................................  Raphanus raphanistrum subsp. landra
FD986434       --> ..................................................  Raphanus raphanistrum subsp. landra
FD986989       --> ..................................................  Raphanus raphanistrum subsp. landra
EY916110       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD564307       --> ..................................................  Raphanus sativus var. oleiformis
FY430064       --> ..................................................  Raphanus sativus cv GSK3-1
FD939505       --> ..................................................  Raphanus sativus var. oleiformis
FD551350       --> ATAGCTTAAAACAAACATTTCATCTCAGCTGCTGATAGTAACACATTTCT  Raphanus raphanistrum subsp. raphanistrum (NY)

               1101   -   1151
UN16630        --> TATCATCACTATACTCACTCTTTGAGGAGAAAAAAAATAATAAGTGTAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY911841       <-- TATCATCACTATACTCACTCTTTGAGGAGAAAAAAAATAATAAGTGTAAT
FD983125       <-- TATCATCACTATACTCACTCTTTGAGGAGAAAAAAAATAATAAGTGTAAT
FD547252       <-- TGTCATCACTATACTCACTCTTTGAGGAGAAAAAAAATAATAAGTGTAAT
EY918073       <-- TATCATCACTATACTCACTCTTTGAGGAGAAAAAAAATAATAAGTGTAAT
FD567824       <-- TATCATCACTATACTCACTCTTTGAGGAGAAAAAAAATAATAAGTGTAAT
FD982692       <-- TATCATCACTATACTCACTCTTTGAGGAGAAAAAAA-TAATAAGTGTAAT
EY922031       --> ..................................................
FD986434       --> ..................................................
FD986989       --> ..................................................
EY916110       --> ..................................................
FD564307       --> ..................................................
FY430064       --> ..................................................
FD939505       --> ..................................................
FD551350       --> TGTCATCACTATACTCACTCTTTGAGGAGAAAAAAA..............

               1151   -   1201
UN16630        --> CTAAAGCAAGCCTTTTATTGAGAGAAACATGGAATGTAATGAAACAAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY911841       <-- CTAAAGCAAGCCTTTTATTGAGAGAAACATGGAATGTAATGAAACAAGTT
FD983125       <-- CTAAAGCAAGCCTTTTATTGAGAGAAACATGGAATGTAATGAAACAAGTT
FD547252       <-- CTAAAGCAAGCCTTTTATTGAGAGAAACATGGAATGTAATGAAACAAGTT
EY918073       <-- CTAAAGCAAGCCTTTTATTGAGAAAAACATGGAATGTAATGAAACAAGTT
FD567824       <-- TTAAAGCAAGCCTTTTATTGAGAGAAACATGGAATGTAATGAAACAAGTT
FD982692       <-- CTAAAGCAAGCCTTTTATTGAGAGAAACATGGAATGTAATGAAACAAGTT
EY922031       --> ..................................................
FD986434       --> ..................................................
FD986989       --> ..................................................
EY916110       --> ..................................................
FD564307       --> ..................................................
FY430064       --> ..................................................
FD939505       --> ..................................................
FD551350       --> ..................................................

               1201   -   1251
UN16630        --> GAGTTTTATTTTAATTTGATAATATAAAAAAAATGAATGCAAACATCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY911841       <-- GAGTTTTATTT.......................................
FD983125       <-- GAGTTTTATTT.......................................
FD547252       <-- GAGTTTTATTTTAATTTGATAATATAAAAAAAATGAATGCAAACATCTTT
EY918073       <-- GAGTTTTATTT.......................................
FD567824       <-- GAGTTTTATTTTAATTTGATAATATAAAAAAAATGAATGCAAACATCTTT
FD982692       <-- GAGTTTTATTT.......................................
EY922031       --> ..................................................
FD986434       --> ..................................................
FD986989       --> ..................................................
EY916110       --> ..................................................
FD564307       --> ..................................................
FY430064       --> ..................................................
FD939505       --> ..................................................
FD551350       --> ..................................................

               1251   -   1301
UN16630        --> TTATTCTCCTTT
                   ~~~~~~~~~~~~
EY911841       <-- ............
FD983125       <-- ............
FD547252       <-- TTATTCTCCTTT
EY918073       <-- ............
FD567824       <-- TTATTC......
FD982692       <-- ............
EY922031       --> ............
FD986434       --> ............
FD986989       --> ............
EY916110       --> ............
FD564307       --> ............
FY430064       --> ............
FD939505       --> ............
FD551350       --> ............