1      -     51
UN16635        --> GGAAAACATTCAAAACAGCAGAAACAGCTTCTTCTTCTTCTTACAAACGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727712       <-- ...........................................ggaaaGA
FD537932       <-- ..................................................
FD547333       <-- ..................................................
EV525931       --> GGAAAACATTCAAAACAGCAGAAACAGCTTCTTCTTCTTCTTACAAACAA
EX902219       --> ........ggaAAAACAGCAGAAACAGCTTCTTCTTCTTCTTACAAA-GA
FD541711       --> .........ggAAAACAGCAGAAACAGCTTCTTCTTCTTCTTACAAACAA
FD551435       --> .........................................ggacacaGA
EW723369       --> ..................................................

               51     -    101
UN16635        --> AAAAA-TGGAAATGGCCATGAGTTTTGTGTATCCACCACCTCC-GTCGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727712       <-- AAAAA-TTGAAATGGCCATTAGTTTTGTGTATCCACCACCTCCCGTCGAT
FD537932       <-- ................................................aa
FD547333       <-- ..................................................
EV525931       --> AAAAA-TGGAATTGGCAATGAGTTTTGTGTATCCACCACCTCC-GTCAAT
EX902219       --> AGAAA-TTGAAATGGCCATGAGTTTTGTGTATCCACCACCTCC-GTCGAT
FD541711       --> AAAAAATGGAATTGGCCATGAGTTTTGTGTATCCACCACCTCC-GTCAAT
FD551435       --> AAAAA-TGGAAATGGCGATGAGTTTTGTGTATCCACCACCTCC-GTCAAT
EW723369       --> .........AAATGGCCATTAGTTTTGTGTATCCACCACCTCC-GTCGAT

               101    -    151
UN16635        --> GTTGCTCAACACTATGAGCGTCGTGGGCTTAGCTGCTCTTGCGCAGATCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727712       <-- GTTGCTCAACACTATGAGCGTCGTGGGCTTAGCTGCTCTTGCGCAGATCG  Raphanus sativus cv Early Scarlet Globe
FD537932       <-- tgTGCTCAACACTATGAGCGTAGTGGGCTTAGCCGCTCT-GCTCAGATCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD547333       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV525931       --> GTTGCTCAACACTATGAGCGTCGTGGGTTTAGCCGCTCTTGCGCAGATCG  Raphanus raphanistrum subsp. maritimus
EX902219       --> GTTGCTCAACACTATGAGCGTCGTGGGCTTAGCTGCTCTTGCGCAGATCG  Raphanus sativus cv Rat-Tail Radish #3870
FD541711       --> GTTGCTCAACACTATGAGCGTAGTGGGCTTAGCCGCTCTTGCTCAGATCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD551435       --> GTTGCTCAACACTATGAGCGTCGTGGGTTTAGTCGCTCTTGCGCAGATAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW723369       --> GTTGCTCAACACTATGAGCGTCGTGGGCTTAGCTGCTCTTGCGCAGATCG  Raphanus sativus cv Early Scarlet Globe

               151    -    201
UN16635        --> GTTGGTCTGAAGTGAGAGGAAACCATCTCAAATACTCCAAATTCGCATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727712       <-- GTTGGTCTGAAGTGAGAGGAAACCATCTCAAATACTCCAAATTCGCATCA
FD537932       <-- GTTGGTCTGAAGTGAGAGGAAACCATCTCAAATACTCCAAATTCGCATCA
FD547333       <-- ..................................................
EV525931       --> GTTGGTCTGAAGTGAGAGGAAACCATCTCAAATACTCCAAATTCGCATCA
EX902219       --> GTTGGTCTGAAGTGAGAGGAAACCATCTCAAATACTCCAAATTCGCATCA
FD541711       --> GTTGGTCTGAAGTGAGAGGAAACCATCTCAAATACTCCAAATTCGCATCA
FD551435       --> GTTGGTCTGAAGTGAGAGGAAACCATCTCAAATACTCCAAATTCGCATCA
EW723369       --> GTTGGTCTGAAGTGAGAGGAAACCATCTCAAATACTCCAAATTCGCATCA

               201    -    251
UN16635        --> TCATCACCACA---ACCACAA------AAGCACCGATTCGGCAGCTTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727712       <-- TCATCACCACA---ACCACAA------AAGCACCGATTCGGCAGCTTCTC
FD537932       <-- TCATCACCACAGCAACCACAA------AAGCACCGATTCGGCAGCTTCTC
FD547333       <-- ..................................................
EV525931       --> TCATCACCACA---ACCACAACCACAAAAGCACCGATTTGGCAGCTTCTC
EX902219       --> TCATCACCACA---ACCACAA------AAGCACCGATTCGGCAGCTTCTC
FD541711       --> TCATCACCACAGCAACCACAA------AAGCACCGATTCGGCAGCTTCTC
FD551435       --> TCATCACCACA---ACCACAA------AAGCACCGACTCGGCAGCTTCTC
EW723369       --> TCATCACCACA---ACCACAA------AAGCACCGATTCGGCAGCTTCTC

               251    -    301
UN16635        --> CAGCCGAATCGGAATGCTTTTGCTCTACACACCAGCCTTCCTAGCCGCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727712       <-- CAGCCGAATCGGAATGCTTTTGCTCTACACACCAGCCTTCCTAGCCGCCG
FD537932       <-- CAGTCGAATCGGGATGCTTTTGCTCTACACACCAGCCTTCCTAGCCGCCG
FD547333       <-- ..................................................
EV525931       --> CAGCCGAATCGGAATGCTTTTGCTCTACACACCAGCCTTCCTAGCCGCCG
EX902219       --> CAGCCGAATCGGAATGCTTTTGCTCTACACACCAGCCTTCCTAGCCGCCG
FD541711       --> CAGTCGAATCGGGATGCTTTTGCTCTACACACCAGCCTTCCTAGCCGCCG
FD551435       --> CAGCCGAATCGGAATGCTTTTGCTCTACACACCAGCCTTCCTAGCCGCCG
EW723369       --> CAGCCGAATCGGAATGCTTTTGCTCTACACACCAGCCTTCCTAGCCGCCG

               301    -    351
UN16635        --> CAGCTTCTTTCTTCGTCTTACCTTCCGATGATCTCAGGTTTCTTCTCCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727712       <-- CAGCTTCTTTCTTCGTCTTACCTTCCGATGATCTCAGGTTTCTTCTCCTC  Raphanus sativus cv Early Scarlet Globe
FD537932       <-- CAGCTTCTTTCTTCGTCTTACCTTCCGATGATCTCAGGTTTCTCCTCCCC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD547333       <-- ...............TCTTACCTTCCGATGATCTCAGGTTTCTTCTCCTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV525931       --> CAGCTTCTTTCTTCGTCTTACCTTCCGATGATCTCAGGTTTCTCCTCATC  Raphanus raphanistrum subsp. maritimus
EX902219       --> CAGCTTCTTTCTTCGTCTTACCTTCCGATGATCTCAGGTTTCTTCTCCTC  Raphanus sativus cv Rat-Tail Radish #3870
FD541711       --> CAGCTTCTTTCTTCGTCTTACCTTCCGATGATCTCAGGTTTCTCCTCCCC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD551435       --> CAGCTTCTTTCTTCGTCTTACCTTCCGATGATCTCAGGTTTCTTCTCCTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EW723369       --> CAGCTTCTTTCTTCGTCTTACCTTCCGATGATCTCAGGTTTCTTCTCCTC  Raphanus sativus cv Early Scarlet Globe

               351    -    401
UN16635        --> AAATCCGCACTCGCTCTCCATTTCCTCAAAAGAATCTTCGAGGTTCTGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727712       <-- AAATCCGCACTCGCTCTCCATTTCCTCAAAAGAATCTTCGAGGTTCTGTG  Raphanus sativus cv Early Scarlet Globe
FD537932       <-- AAATCCGCACTCGCCCTCCATTTCCTCAAAAGAATCTTCGAGGTTCTGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD547333       <-- AAATCCGCACTCGCTCTCCATTTCCTCAAAAGAATCTTCGAGGTTCTGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV525931       --> AAATCCGCACTCGCTCTCCATTTCCTCAAAAGAATCTTCGAGGTTCTGTT  Raphanus raphanistrum subsp. maritimus
EX902219       --> AAATCCGCACTCGCTCTCCATTTCCTCAAAAGAATCTTCGAGGTTCTGTG  Raphanus sativus cv Rat-Tail Radish #3870
FD541711       --> AAATCCGCACTCGCCCTCCATTTCCTCAAAAGAATCTTCGAGGTTCTGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD551435       --> AAATCCGCACTCGCTCTCCATTTCCTCAAAAGAATCTTCGAGGTTCTGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW723369       --> AAATCCGCACTCGCTCTCCATTTCCTCAAAAGAATCTTCGAGGTTCTGTG  Raphanus sativus cv Early Scarlet Globe

               401    -    451
UN16635        --> CATCCACAAGTACAGTGGAGAGATGGCTGTAGACTCAGCCTTCATCATAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727712       <-- CATCCACAAGTACAGTGGAGAGATGGCTGTAGACTCAGCCTTCATCATAA  Raphanus sativus cv Early Scarlet Globe
FD537932       <-- CATCCACAAGTACAGCGGAGAGATGGCTGTAGACTCAGCCTTCATCATAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD547333       <-- CATCCACAAGTACAGCGGAGAGATGGCTGTAGACTCAGCCTTCATCATAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV525931       --> CATCCACAAGTACAGTGGAGAGATGGCTGTAGACTCAGCCTTCATCATAA  Raphanus raphanistrum subsp. maritimus
EX902219       --> CATCCACAAGTACAGTGGAGAGATGGCTGTAGACTCAGCCTTCATCATAA  Raphanus sativus cv Rat-Tail Radish #3870
FD541711       --> CATCCACAAGTACAGCGGAGAGATGGCTGTAGACTCAGCCTTCATCATAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD551435       --> CATCCACAAGTACAGCGGAGAGATGGCTGTAGACTCAGCCTTCATCATAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW723369       --> CATCCACAAGTACAGTGGAGAGATGGCTGTAGACTCAGCCTTCATCATAA  Raphanus sativus cv Early Scarlet Globe

               451    -    501
UN16635        --> CCAGCAGCTACTTCTCATCCACGGTGTTGATGCTATACAGCCAAAGCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727712       <-- CCAGCAGCTACTTCTCATCCACGGTGTTGATGCTATACAGCCAAATCATC
FD537932       <-- CCAGCAGCTACTTCTCATCCACGGTGTTGATGCTATACAGCCAAAGCTTC
FD547333       <-- CCAGCAGCTACTTCTCATCCACGGTGTTGATGCTATACAGCCAGAACTTC
EV525931       --> CCAGCAGCTACTTCTCATCCACGGTGTTGATGCTATACAGCCAAAGCTTC
EX902219       --> CCAGCAGCTACTTCTCATCCACGGTGTTGATGCTATACGGCCAAAGCTTC
FD541711       --> CCAGCAGCTACTTCTCATCCACGGTGTTGATGCTATACAGCCAAAGCTTC
FD551435       --> CCAGCAGCTACTTCTCATCCACGGTGTTGATGCTATACAGCCAGAACTTC
EW723369       --> CCAGCAGCTACTTCTCATCCACGGTGTTGATGCTATACAGCCAAATCATC

               501    -    551
UN16635        --> ACACTAGGACTAACCGAGCCGGCTTTCGATACGAAACTCATCGGGATTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727712       <-- ACACTAGGACTAACCGAGCCGGCTTTCGATACGAAACTCATCGGGATTGT
FD537932       <-- ACACTAGGACTAACCGAGCCCGCTTTCGATACGAAACTCATCGGGGTTGT
FD547333       <-- ACACTAGGACTAACCGAGCCAGCTTTCGATACGAAACTCATCGGGATTGT
EV525931       --> ACACTAGGACTAACCGAGCCGGCTTTCGATACGAAACTCATCGGGATTGT
EX902219       --> ACACTAGGACTAACCGAGCCGGCTTTCGATACGAAACTCATCGGGATTGT
FD541711       --> ACACTAGGACTAACCGAGCCCGCTTTCGATACGAAACTCATCGGGGTTGT
FD551435       --> ACACTAGGACTAACCGAGCCAGCTTTCGATACGAAACTCATCGGGATTGT
EW723369       --> ACACTAGGACTAACCGAGCCGGCTTTCGATACGAAACTCATCGGGATTGT

               551    -    601
UN16635        --> CATGTTTGTGGTGGGAATCGTTGGGAACCTGTATCACCATGTTCTGCTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727712       <-- CATGTTTGTGGTGGGAATCGTTGGGAACCTGTATCACCATGTTTTGCTAG
FD537932       <-- CATGTTTGTGGTGGGAATCGTTGGGAATCTGTATCACCATGTTCTGCTAG
FD547333       <-- CATGTTTGTGGTGGGAATCGTTGGGAACCTGTATCACCATGTTCTGCTAG
EV525931       --> CATGTTCGTGGTGGGAATCGTTGGGAACCTGTATCACCATGTTCTGCTAG
EX902219       --> CATGTTTGTGGTGGGAATCGTTGGGAACCTGTATCACCATGTTCTGCTAG
FD541711       --> CATGTTTGTGGTGGGAATCGTTGGGAATCTGTATCACCATGTTCTGCTAG
FD551435       --> CATGTTTGTGGTGGGAATCGTTGGGAACCTGTATCACCATGTTCTGCTAG
EW723369       --> CATGTTTGTGGTGGGAATCGTTGGGAACCTGTATCACCATGTTCTGCTAG

               601    -    651
UN16635        --> CTAAGCTAAGGAACGAGGAAGGCGGGAAGAAAGTGTACAAGATACCAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727712       <-- CTAAGCTAAGGAACGAGGAAGGCGGGAAGAAAGTGTACAAGATACCAAAA  Raphanus sativus cv Early Scarlet Globe
FD537932       <-- CTAAGCTAAGGAACGAAGAAGGCGGGAAGAAAGTGTACAAGATACCAAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD547333       <-- CTAAGCTAAGGAACGAGGAAGGCGGGAAGAAAGTGTACAAGATACCAAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV525931       --> CTAAGCTAAGGAACGAAGAAGGCGGGAAGAAAGTGTACAAGATACCAAAA  Raphanus raphanistrum subsp. maritimus
EX902219       --> CTAAGCTA..........................................  Raphanus sativus cv Rat-Tail Radish #3870
FD541711       --> CTAAGCTAAGGAACGAAGAAGGCGGGAAGAAAGTGTACAAGATACCAAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD551435       --> CTAAGCTAAAGAACGAGGAAGGCGGGAAGAAAGTGTACAAGATACCA...  Raphanus raphanistrum subsp. raphanistrum (NY)
EW723369       --> CTAAGCTAAGGAACGAGGAAGGCGGGAAGAAAGTGTACAAGATACCAAAA  Raphanus sativus cv Early Scarlet Globe

               651    -    701
UN16635        --> GGTGGTCTGTTCGACACGATCATATGCCCTCACTACCTGTTCGAGATCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727712       <-- GGTGGTCTGTTCGACACGATCATATGCCCTCACTACCTGTTCGAGATCAT
FD537932       <-- GGTGGTCTGTTCGACACGATCATATGCCCTCACTACC-GTTCGAGATCAT
FD547333       <-- GGTGGTCTGTTCGACACGATCATATGCCCTCACTACCTGTTCGAGATCAT
EV525931       --> GGTGGTCTGTTCGACACCATCATATGCCCTCACTACCTGTTCGAGATCAT
EX902219       --> ..................................................
FD541711       --> GGTGGTCTGTTCGACACGATCATATGCCCTCACTACC-GTTCGAGATCAT
FD551435       --> ..................................................
EW723369       --> GGTGGTCTGTTCGACACGATCATATGCCCTCACTACCTGTTCGAGATCAT

               701    -    751
UN16635        --> TGTGTTTTGGAGCTTCTTTATGGTTTCTCAGACCATTTACTCGTTTTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727712       <-- TGTGTTTTGGAGCTTCTTTATGGTTTCTCAGACCATTTACTCGTTTTCTT
FD537932       <-- TGTGTTTTGGAGCTTCTTTATGGTTTCTCAGACCATTTACTCGTTTTCTT
FD547333       <-- TGTGTTTTGGAGCTTCTTTATGGTTTCTCAGACCATTTACTCGTTTTCTT
EV525931       --> TGTGTTTTGGAGCTTCTTTATGGTTTCTCAGACCATTTACTCGTTTTCTT
EX902219       --> ..................................................
FD541711       --> TGTGTTTTGGAGCTTCTTTATGGTTTCTCAGACCATTTACTCGTTTTCTT
FD551435       --> ..................................................
EW723369       --> TGTGTTTTGGAGCTTCTTTATGGTTTCTCAGACCATTTACTCGTTTTCTT

               751    -    801
UN16635        --> TCGCCATGGGAACCACTTTCTATCTCGTTGGTCGGAGCTACGCTACTAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727712       <-- TCGCCATGGGAACCACTTTC--TCTCGTTGGTCGGAGCTACGCTACTAGA
FD537932       <-- TCGCCATGGGAACCACTTTCTATCTCGTTGGTTGGAGCTACGCTACGAGA
FD547333       <-- TCGCCATGGGAACCACTTTCTATCTCGTTGGTCGGAGCTACGCTACTAGA
EV525931       --> TCGCCATGGGAACCACTTTCTATCTCGTTGGTCGGAGCTACGCTACTAGA
EX902219       --> ..................................................
FD541711       --> TCGCCATGGGAACCACTTTCTATCTCGTTGGTTGGAGCTACGCTA.....
FD551435       --> ..................................................
EW723369       --> TCGCCATGGGAACCACTTTCT--CTCGTTGGTCGGAGCTACGCTACTAGA

               801    -    851
UN16635        --> AGATGGTATCTTTCCAAGTTTGATGACTTCCCGAAGCATGTCAAGGCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727712       <-- AGATGGTATCTTTCCAAGTTTGATGACTTCCCGAAGCATGTCAAGGCTCT
FD537932       <-- AGATGGTATCTTTCCAAGTTCGATGACTTCCCGAAGCATGTCAAGGCTCT
FD547333       <-- AGATGGTATCTTTCCAAGTTTGATGACTTCCCGAAGCATGTCAAGGCTCT
EV525931       --> AGATGGTATCTTTCCAAGTTTGATGACTTCCCGAAGCATGTCAggct...
EX902219       --> ..................................................
FD541711       --> ..................................................
FD551435       --> ..................................................
EW723369       --> AGATGGTATCTTTCCAAGTTTGATGACTTCCCGAAGCATG..........

               851    -    901
UN16635        --> TATTCCTTTTGTATTCTAGACATATTTGTTGTATGTTTGTTTCTATTACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727712       <-- TATTCCTTTTGTATCCTAGACATATTTGTTGTATGTTTGTTTCTATTACA
FD537932       <-- TATTCCTTTTGTATTCTAGACATATTTGTTGTATGTTTGTTTCTATTACA
FD547333       <-- TATTCCTTTTGTATTCTAGACATATTTGTTGTATGTTTGTCTCTATTACA
EV525931       --> ..................................................
EX902219       --> ..................................................
FD541711       --> ..................................................
FD551435       --> ..................................................
EW723369       --> ..................................................

               901    -    951
UN16635        --> AAATTCTTGTTGGTCTTTTGATTATTTTGTTGTTAAATTTACATTTTATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727712       <-- AAATTCTTGTTGGTCTTTcg..............................
FD537932       <-- AAATTCTTGTTGGTCTTTTGATTATTTTGTTGTTAAATTT..........
FD547333       <-- AAATTCTTGTTGGTCTTTTGATTATTTTGTTGTCAAATTTACATTTTATT
EV525931       --> ..................................................
EX902219       --> ..................................................
FD541711       --> ..................................................
FD551435       --> ..................................................
EW723369       --> ..................................................

               951    -   1001
UN16635        --> CGTTCGTGATTTAAAATTTTAAATGAATAAAGGTTTACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727712       <-- .......................................
FD537932       <-- .......................................
FD547333       <-- CGTTCGTGATTTAAAATTTTAAATGAATAAAGGTTTACC
EV525931       --> .......................................
EX902219       --> .......................................
FD541711       --> .......................................
FD551435       --> .......................................
EW723369       --> .......................................