1      -     51
UN16692        --> TCAGATAAATTTCATGTATTAGAAAAAAGCCATATGATGCTCATGCATCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442228       <-- TCAGATAAATTTCATGTATTAGAAAAAAGCCATATGATGCTCATGCATCC
FY430911       <-- ............CATGTATTAGAAAAAAGCCATATGATGCTCATGCATCC
FY444654       <-- ..................................................
EV537377       <-- ..................................................
EX770075       <-- ..................................................
EX896767       <-- ..................................................
EX900647       --> ..................................................
EX774336       --> ..................................................

               51     -    101
UN16692        --> AATCAAAATCATATGGTAATAAAGATTACATTACAAAAAAAAAA-CTCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442228       <-- AATCAAAATCATATGATAATAAAGATTACATTACAAAAAAAAAAACTCAT
FY430911       <-- AATCAAAATCATATGGTAATAAAGATTACATTACAAAAAAAAAA-CTCAT
FY444654       <-- ................................ACAAAAAAAAAA-CTCAT
EV537377       <-- ..................................................
EX770075       <-- ..................................................
EX896767       <-- ..................................................
EX900647       --> ..................................................
EX774336       --> ..................................................

               101    -    151
UN16692        --> AACCTCACATACAACCAACACACAAATTGAGAAAAACTGTAAGGTTTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442228       <-- AACCTCACATACAACCAACACACAAATTGAGAAAAACTGTAAGGTTTTCT
FY430911       <-- AACCTCACATACAACCAACACACAAATTGAGAAAAACTGTAAGGTTTTCT
FY444654       <-- AACCTCACATACAACCAACACACAAATTGAGAAAAACTGTAAGGTTTTCT
EV537377       <-- ............................GAGAAAAACTGTAAGGTTTTCT
EX770075       <-- ...................................gCTGTAAGGTTTTCT
EX896767       <-- ..................................................
EX900647       --> ............................GAGAAAAACTGTAAGGTTTTCT
EX774336       --> ...................................gCTGTAAGGTTTTCT

               151    -    201
UN16692        --> CATTTATTCAATCACAAAAGTTCACAACCATATATAATGCATATAAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442228       <-- CATTTATTCAATCACAAAAGTTCACAACCATATATAATGCATATAAAAA-  Raphanus sativus cv GSK3-1
FY430911       <-- CATTTATTCAATCACAAAAGTTCACAACCATATATAATGCATATAAAAA-  Raphanus sativus cv GSK3-1
FY444654       <-- CATTTATTCAATCACAAAAGTTCACAACCATATATAATGCATATAAAAA-  Raphanus sativus cv GSK3-1
EV537377       <-- CATTTATTCAATCACAAAAGTTCACAACCATATATAATGCATATAAAAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX770075       <-- CATTTATTCAATGACAAAAGTTCACAACCATATATAATGCATATAAAAAA  Raphanus raphanistrum subsp. landra
EX896767       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX900647       --> CATTTATTCAATCACAAAAGTTCACAACCATATATAATGCATAAAAAAAA  Raphanus sativus cv Early Scarlet Globe
EX774336       --> CATTTATTCAATGACAAAAGTTCACAACCATATATAATGCATATAAAAAA  Raphanus raphanistrum subsp. landra

               201    -    251
UN16692        --> CTACTACAATCAAATCAAGACAAAAGAAACTTCATGATCATCAACTACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442228       <-- CTACTAAAATCAAATCAAGACAAAAGAAACTTCATGATCATCAACTACAA  Raphanus sativus cv GSK3-1
FY430911       <-- CTACTAAAATCAAATCAAGACAAAAGAAACTTCATGATCATCAACTACAA  Raphanus sativus cv GSK3-1
FY444654       <-- CTACTAAAATCAAATCAAGACAAAAGAAACTTCATGATCATCAACTACAA  Raphanus sativus cv GSK3-1
EV537377       <-- CTACTACAATCAAATCAAGACAAAAGGATCTTCATGATCATCAACTACAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX770075       <-- CTACTACAATCAAATCAAGACAAAAGAAACTTCATGATCATCAACTACAA  Raphanus raphanistrum subsp. landra
EX896767       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX900647       --> CTACTACAATCAAATCAAGACAAAAGGATCTTCATGATAATCAACTACAA  Raphanus sativus cv Early Scarlet Globe
EX774336       --> CTACTACAATCAAATCAAGACAAAAGAAACTTCATGATCATCAACTACAA  Raphanus raphanistrum subsp. landra

               251    -    301
UN16692        --> TAACATAGCAAATATATAATCATTGAAATGACTATATATTATAAAGATAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442228       <-- TAACATAGCAAATATATAATCATTGAAATGACTATATATTATAAAGATAG
FY430911       <-- TAACATAGCAAATATATAATCATTGAAATGACTATATATTATAAAGATAG
FY444654       <-- TAACATAGCAAATATATAATCATTGAAATGACTATATATTATAAAGATAG
EV537377       <-- TAACATAGCAAATATATAATCATTGTAATGACTATATATTATAAAGATAG
EX770075       <-- TAACATAGCAAATATATAATCATTGAAATGACTATATATTATAAAGATAG
EX896767       <-- ..................................................
EX900647       --> TAACATAGCAAATATATAATCATTGTAATGACTATATATTATAAAGATAG
EX774336       --> TAACATAGCAAATATATAATCATTGAAATGACTATATATTATAAAGATAG

               301    -    351
UN16692        --> GGCTTTAATTATTTTTTTTATTAGCAATAAGCGACACACTTCTTCTTACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442228       <-- GGCTTTAATTATTTTTTT-ATTAGCAATAAGCGACACACTTCTTCTTACA
FY430911       <-- GGCTTTAATTATTTTTTTTATTAGCAATAAGCGACACACTTCTTCTTACA
FY444654       <-- GGCTTTAATTATTTTTTTTATTAGCAATAAGCGACACACTTCTTCTTACA
EV537377       <-- GACTTTAATTATTTTTTTCTTTAGCAATAAGCGACACACTTCTTCTTACA
EX770075       <-- GGCTTTAATTATTTTTTTTATTAGCAATAAGCGACACACTTCTTCTTACA
EX896767       <-- ..................................................
EX900647       --> GACTTTAATTATTTTTTT-ATTAGCAATAAGCGACACACTTCTTCTTACA
EX774336       --> GGCTTTAATTATTTTTTTTATTAGCAATAAGCGACACACTTCTTCTTACA

               351    -    401
UN16692        --> ATCCATGGTACATCCACCACCTCCGCCTCCACCGCCGTATCCTTTCCCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442228       <-- ATCCATGGTACATCCACCACCTCCGCCTCCACCGCCGTATCCTTTCCCGG
FY430911       <-- ATCCATGGTACATCCACCACCTCCGCCTCCACCGCCGTATCCTTTCCCGG
FY444654       <-- ATCCATGGTACATCCACCACCTCCGCCTCCACCGCCGTATCCTTTCCCGG
EV537377       <-- ATCCATGGTGCATCCACCACCTCCGCCTCCACCGCCGTATCCTTTCCCGG
EX770075       <-- ATCCATGGTACATCCACCACCTCCGCCTCCACCGCCGTATCCTTTCCCGG
EX896767       <-- ...........ATCCACCACCTCCACCTCCACCGCCGTATCCTTTCCCGG
EX900647       --> ATCCATGGTGCATCCACCACCTCCACCTCCACCGCCGTATCCTTTCCCGG
EX774336       --> ATCCATGGTACATCCACCACCTCCGCCTCCACCGCCGTATCCTTTCCCGG

               401    -    451
UN16692        --> AGCGGCTAAAAGAGCTGAAACACCTGGCAGGACACCTCAGCTTCTTGCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442228       <-- AGCGGCTAAAAGAGCTGAAACACCTGGCAGGACACCTCAGCTTCTTGCCG  Raphanus sativus cv GSK3-1
FY430911       <-- AGCGGCTAAAAGAGCTGAAACACCTGGCAGGACACCTCAGCTTCTTGCCG  Raphanus sativus cv GSK3-1
FY444654       <-- AGCGGCTAAAAGAGCTGAAACACCTGGCAGGACACCTCAGCTTCTTGCCG  Raphanus sativus cv GSK3-1
EV537377       <-- AGCGGCTAAAAGAGCTGAAACACCTTGCAGGACACCTCAGCTTCTTGCCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX770075       <-- AGCGGCTAAAAGAGCTGAAACACCTGGCAGGACACCTCAGCTTCTTGCCG  Raphanus raphanistrum subsp. landra
EX896767       <-- AGCGGCTAAAAGAGCTGAAACACCTTGCAGGACACCTCAGCTTCTTGCCG  Raphanus sativus cv Early Scarlet Globe
EX900647       --> AGCGGCTAAAAGAGCTGAAACACCTTGCAGGACACCTCAGCTTCTTGCCG  Raphanus sativus cv Early Scarlet Globe
EX774336       --> AGCGGCTAAAAGAGCTGAAACACCTGGCAGGACACCTCAGCTTCTTGCCG  Raphanus raphanistrum subsp. landra

               451    -    501
UN16692        --> TTACAAGGTCCTTTCTCTTTGCAAGTCACCGTCGGCCTCACCACGCCTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442228       <-- TTACAAGGTCCTTTCTCTTTGCAAGTCACCGTCGGCCTCACCACGCCTCC
FY430911       <-- TTACAAGGTCCTTTCTCTTTGCAAGTCACCGTCGGCCTCACCACGCCTCC
FY444654       <-- TTACAAGGTCCTTTCTCTTTGCAAGTCACCGTCGGCCTCACCACGCCTCC
EV537377       <-- TTACAAGGTCCTTTCTCTTTGCAAGTCACCGTCGGCCTCACCACGCCTCC
EX770075       <-- TTACAAGGTCCTTTCTCTTTGCAAGTCACCGTCGGCCTCACCACGCCTCC
EX896767       <-- TTACAAGGTCCTTTCTCCTTGCAAGTCACCGTCGGCCTCACCACGCCTCC
EX900647       --> TTACAAGGTCCTTTCTCCTTGCAAGTCACCGTCGGCCTCACCACGCCTCC
EX774336       --> TTACAAGGTCCTTTCTCTTTGCAAGTCACCGTCGGCCTCACCACGCCTCC

               501    -    551
UN16692        --> TTTCCCGTACCCGCCGCTCGGACCACCGTAGCCTCCGCCGTATCCACCGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442228       <-- TTTCCCGTACCCGCCGCTCGGACCACCGTAGCCTCCGCCGTATCCACCGC
FY430911       <-- TTTCCCGTACCCGCCGCTCGGACCACCGTAGCCTCCGCCGTATCCACCGC
FY444654       <-- TTTCCCGTACCCGCCGCTCGGACCACCGTAGCCTCCGCCGTATCCACCGC
EV537377       <-- TTTCCCGTACCCGCCGCTCGGACCACCGTAGCCTCCGCCGTATCCACCGC
EX770075       <-- TTTCCCGTACCCGCCGCTCGGACCACCGTAGCCTCCGCCGTATCCACCGC
EX896767       <-- TTTCCCGTACCCGCCGCTCGGACCACCGTAGCCTCCGCCGTATCCACCGC
EX900647       --> TTTCCCGTACCCGCCGCTCGGACCACCGTAGCCTCCGCCGTATCCACCGC
EX774336       --> TTTCCCGTACCCGCCGCTCGGACCACCGTAGCCTCCGCCGTATCCACCGC

               551    -    601
UN16692        --> CGACTCCAGTACCGGGAAACCCGTTTCCAAACCCGGGTATCCCGGCATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442228       <-- CGACTCCAGTACCGGGAAACCCGTTTCCAAACCCGGGTATCCCGGCATAT  Raphanus sativus cv GSK3-1
FY430911       <-- CGACTCCAGTACCGGGAAACCCGTTTCCAAACCCGGGTATCCCGGCATAT  Raphanus sativus cv GSK3-1
FY444654       <-- CGACTCCAGTACCGGGAAACCCGTTTCCAAACCCGGGTATCCCGGCATAT  Raphanus sativus cv GSK3-1
EV537377       <-- CGACTCCGGTACCCGGAAACCCGTTTCCAAACCCGGGTATCCCGGCGTAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX770075       <-- CGACTCCAGTACCGGGAAACCCGTTTCCAAACCCGGGTATCCCGGCATAT  Raphanus raphanistrum subsp. landra
EX896767       <-- CGACTCCGGTACCCGGAAACCCGTTTCCAAACCCTGGTATCTCGGCATAT  Raphanus sativus cv Early Scarlet Globe
EX900647       --> CGACTCCGGTACCCGGAAACCCGTTTCCAAACCCTGGTATCTCGGCATAT  Raphanus sativus cv Early Scarlet Globe
EX774336       --> CGACTCCAGTACCGGGAAACCCGTTTCCAAACCCGGGTATCCCGGCATAT  Raphanus raphanistrum subsp. landra

               601    -    651
UN16692        --> CCGGATCCGGGCACACCGGCGAATCCTAAACCATTGTTACCGCTCTTCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442228       <-- CCGGATCCGGGCACACCGGCGAATCCTAAACCATTGTTACCGC.......
FY430911       <-- CCGGATCCGGGCACACCGGCGAATCCTAAACCAT-GTTACCGCTC.....
FY444654       <-- CCGGATCCGGGCACACCGGCGAATCCTAAACCATTGTTACCGCTCTTCTG
EV537377       <-- CCGGATCCGGGCACACCGGCAAATCCTAAACCGTTGTTACCGCTCTTCTG
EX770075       <-- CCGGATCCGGGCACACCGGCGAATCCTAAACCATTGTTACCGCTCTTCTG
EX896767       <-- CCGGATCCGGGCACACCGGCGAATCCTAAACCATTGTTACCGCTCTTCTG
EX900647       --> CCGGATCCGGGCACACCGGCGAATCCTAAACCATTGTTACCGCTCTTCTG
EX774336       --> CCGGATCCGGGCACACCGGCGAATCCTAAACCATTGTTACCGCTCTTCTG

               651    -    701
UN16692        --> ACGAGCTGAGTGAGTTGCAGAGACGAAGATGATGAGGAGAAGGGAAGCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442228       <-- ..................................................  Raphanus sativus cv GSK3-1
FY430911       <-- ..................................................  Raphanus sativus cv GSK3-1
FY444654       <-- ACGAGCTGAGTGAGTTGCAGAGACGAAGATGATGAGGAGAAGGGAAG-TA  Raphanus sativus cv GSK3-1
EV537377       <-- ACGAGCTGAGTGAGTTGCAGAGACGAAGATGATGAGGAGAAGGGAAGCTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX770075       <-- ACGAGCTGAGTGAGTTGCAGAGACGAAGATGATGAGGAGAAGGGAAGCTA  Raphanus raphanistrum subsp. landra
EX896767       <-- ACGAGCTGAGTGAGTTGCAGAGACGAAGATGATGAGGAGAAGGGAAGCTA  Raphanus sativus cv Early Scarlet Globe
EX900647       --> ACGAGCTGAGTGAGTTGCAGAGACGAAGATGATGAGGAGAAGGGAAGCTA  Raphanus sativus cv Early Scarlet Globe
EX774336       --> ACGAGCTGAGTGAGTTGCAGAGACGAAGATGATGAGGAGAAGGGAAGCTA  Raphanus raphanistrum subsp. landra

               701    -    751
UN16692        --> CAAGGATCGGTTTTGTTGTAAACATTTTTGTTTTTGGTTAAGTGGGTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY442228       <-- ..................................................  Raphanus sativus cv GSK3-1
FY430911       <-- ..................................................  Raphanus sativus cv GSK3-1
FY444654       <-- CAAGGATCG.........................................  Raphanus sativus cv GSK3-1
EV537377       <-- AAAGGATCGGTTTCGTTGTAAACATTTTTGTTTTTGGTTAAGTGGGTTCC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX770075       <-- CAAGGATCGGTTTTGTTGTAAACATTTTTGTTTTTGGTTCAGTGGGTTCC  Raphanus raphanistrum subsp. landra
EX896767       <-- AAAGGATCGGTTTTGTTGTAAACATTTTTGTTTTTGGTTAAGTGGGTTCC  Raphanus sativus cv Early Scarlet Globe
EX900647       --> AAAGGATCGGTTTTGTTGTAAACATTTTTGTTTTTGGTTAAGTGGGTTCC  Raphanus sativus cv Early Scarlet Globe
EX774336       --> CAAGGATCGGTTTTGTTGTAAACATTTTTGTTTTTGGTTCAGTGGGTTCC  Raphanus raphanistrum subsp. landra