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Alignment for radish unigene UN16712

               1      -     51
UN16712        --> AGTTTACGATCCGGGAACAAATTACACAAACTGGATTTGGTTTGTAGCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD549304       <-- ....................ATTACACAAACTGGATTTGGTT-GTAGCTA
EY938534       <-- ..................................................
EX897037       <-- ..................................................
EX749915       <-- ..................................................
EV536108       <-- ..................................................
FD938169       <-- ..................................................
EV552608       <-- ..................................................
FD940824       <-- ..................................................
FD540456       <-- ..................................................
EV528434       <-- ..................................................
EV532429       --> AGTTTACGATCCGGGAACAAATTACACAAACCGGATTTGGTTTGTAGCTA
FD545373       --> ........ATCCGGGAACAAATTACACAAACTGGATTTGGTTTGTAGCTA
EX900864       --> ..................................................
EY934647       --> ..................................................
FD536962       --> ..................................................
EV540631       --> ..................................................
EV570933       --> ..................................................
EX753493       --> ..................................................
EV570932       --> ..................................................
EX767361       --> ..................................................

               51     -    101
UN16712        --> TGGTCCAATATGATATGTATATAACATAACATTACAACCAAATTAACAA-
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD549304       <-- TGGTCCAATATGATATGTATATAACATAACATTACAACCAAATTAACAA-
EY938534       <-- .GGTCCAATATGATATGTATATAACATAACATTACAACCAAATTAACAAA
EX897037       <-- ..................................................
EX749915       <-- ..................................................
EV536108       <-- ..................................................
FD938169       <-- ..................................................
EV552608       <-- ..................................................
FD940824       <-- ..................................................
FD540456       <-- ..................................................
EV528434       <-- ..................................................
EV532429       --> TGGTCCAATATGATATGTATATAACATAACATTACAACCAAATTAACAA-
FD545373       --> TGGTCCAATATGATATGTATATAACATAACATTACAACCAAATTAACAA-
EX900864       --> .GGTCCAATATGATATGTATATAACATAACATTACAACCAAATTAACAAA
EY934647       --> .GGTCCAATATGATATGTATATAACATAACATTACAACCAAATTAACAAA
FD536962       --> .GGTCCAATATGATATGTATATAACATAACATTACAACCAAATCAACAA-
EV540631       --> ...........GATATGTATATAACATAACATTACAACCAAATTAACAA-
EV570933       --> ..............ATGTATATAACATAACATTACAACCAAATTAACAA-
EX753493       --> ..................ATATAACATAACATTACAACCAAATTAACAA-
EV570932       --> ..................................................
EX767361       --> ..................................................

               101    -    151
UN16712        --> GGGAAAAAAAAGTTCTGAAGCAACAAAAATCCACTTTTCCTTAATACACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD549304       <-- GGGAAAAAAAAGTTCTGAAGCAACAAAAATCCACTTTTCCTTAATACACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY938534       <-- GGGAAAAAAAAGTTCTGAAGCAACAAAAATCCACTTTTCCTTAATACACA  Raphanus sativus cv Early Scarlet Globe
EX897037       <-- .............TCTGAAGCAACAAAAATCCACTTTTCCTTAATACACA  Raphanus sativus cv Early Scarlet Globe
EX749915       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV536108       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD938169       <-- ..................................................  Raphanus sativus var. oleiformis
EV552608       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD940824       <-- ..................................................  Raphanus sativus var. oleiformis
FD540456       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV528434       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV532429       --> GGGAAAAAAA-GTTCTGAAGCAACAAAAATCCACTTTTCCTTAATACACA  Raphanus raphanistrum subsp. maritimus
FD545373       --> GGGAAAAAAAAGTTCTGAAGCAACAAAAATCCACTTTTCCTTAATACACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX900864       --> GGGAAAAAAAAGTTCTGAAGCAACAAAAATCCACTTTTCCTTAATACACA  Raphanus sativus cv Early Scarlet Globe
EY934647       --> GGGAAAAAAAAGTTCTGAAGCAACAAAAATCCACTTTTCCTTAATACACA  Raphanus sativus cv Early Scarlet Globe
FD536962       --> GGGAAAAAAAAGTTCTGAAGCAACAAAAATCCACTTTTCCTTAATACACA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV540631       --> GGGAAAAAAA-GTTCTGAAGCAACAAAAATCCACTTTTCCTTAATACACA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV570933       --> AGGAAAAAAA-GTTCTGAAGCAACAAAAATCCACTTTTCCTTAATACACA  Raphanus raphanistrum subsp. landra
EX753493       --> AGGAAAAAAA-GTTCTGAAGCAACAAAAATCCACTTTTCCTTAATACACA  Raphanus raphanistrum subsp. maritimus
EV570932       --> ..................................................  Raphanus raphanistrum subsp. landra
EX767361       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               151    -    201
UN16712        --> ATAACGAAGCAGAGGTTTTGCTTTTACGGGCTTCCTCTAGACATCTCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD549304       <-- ATAACGAAGCAGAGGTTTTGCTTTTACGGGCTTCCTCTAGACATCTCTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY938534       <-- ATAACGAAGTAGAGGTTTTGCTTTTACGGGCTTCCTCTAGACATCTCTTT  Raphanus sativus cv Early Scarlet Globe
EX897037       <-- ATAACGAAGTAGAGGTTTTGCTTTTACGGGCTTCCTCTAGACATCTCTTT  Raphanus sativus cv Early Scarlet Globe
EX749915       <-- ......................................AGACATCTCTTT  Raphanus raphanistrum subsp. maritimus
EV536108       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD938169       <-- ..................................................  Raphanus sativus var. oleiformis
EV552608       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD940824       <-- ..................................................  Raphanus sativus var. oleiformis
FD540456       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV528434       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV532429       --> ATAACGAAGCAAAGGTTTTGCTTTTAGGGGCTTCCTCTAAACATCTCTTT  Raphanus raphanistrum subsp. maritimus
FD545373       --> ATAACGAAGCAGAGGTTTTGCTTTTACGGGCTTCCTCTAGACATCTCTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX900864       --> ATAACGAAGTAAAGGTTTTGCTTTTACGGGCTTCCTCTAAACATCTCTTT  Raphanus sativus cv Early Scarlet Globe
EY934647       --> ATAACGAAGTAGAGGTTTTGCTTTTACGGGCTTCCTCTAGACATCTCTTT  Raphanus sativus cv Early Scarlet Globe
FD536962       --> ATAACGAAGCAGAGGTTTTGCTTTTACGGGCTTCCTCTAGACATCTCCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV540631       --> ATAACGAAGCAGAGGTTTTGCTTTTACGGGCTTCCTCTAGACATCTCTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV570933       --> ATAACGAAGCAGAGGTTTTGCTTTTACGGGCTTCCTCTAGACATCTCTTT  Raphanus raphanistrum subsp. landra
EX753493       --> ATAACGAAGCAAAGGTTTTGCTTTTACGGGCTTCCTCTAGACATCTCTTT  Raphanus raphanistrum subsp. maritimus
EV570932       --> ..................................................  Raphanus raphanistrum subsp. landra
EX767361       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               201    -    251
UN16712        --> GATCATCATGAGATTTTCAAATGTTCTT--TCTTCTTCAACCCATTGGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD549304       <-- GATCATCATGAGATTTTCAAATGTTCTTCTTCTTCGTCAACCCATTGGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY938534       <-- GATCATCATGAGATTTTCAAATGTTCTT--T-TTCTTCAACCCATTGATC  Raphanus sativus cv Early Scarlet Globe
EX897037       <-- GATCATCATGAGATTTTCAAATGTTCTT--T-TTCTTCAACCCATTGATC  Raphanus sativus cv Early Scarlet Globe
EX749915       <-- GATCATCATGAGATTTTCAAATGTT------CTTCTTCAACCCATTGGTC  Raphanus raphanistrum subsp. maritimus
EV536108       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD938169       <-- ..................................................  Raphanus sativus var. oleiformis
EV552608       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD940824       <-- ..................................................  Raphanus sativus var. oleiformis
FD540456       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV528434       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV532429       --> GATCATCATGAGATTTTCAAATGTTCTTCTTCTTCTTCAACCCATTGGTC  Raphanus raphanistrum subsp. maritimus
FD545373       --> GATCATCATGAGATTTTCAAATGTTCTTCTTCTTCGTCAACCCATTGGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX900864       --> GATCATCATGAGATTTTCAAATGTTCTT--T-TTCTTCAACCCATTGATC  Raphanus sativus cv Early Scarlet Globe
EY934647       --> GATCATCATGAGATTTTCAAATGTTCTT--T-TTCTTCAACCCATTGATC  Raphanus sativus cv Early Scarlet Globe
FD536962       --> GATCATCATGAGATTTTCAAATGTTCTTCTTCTTCTTCAACCCATTGGTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV540631       --> GATCATCATGAGATTTTCAAATGTTCTTCTTCTTCTTCAACCCATCGGTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV570933       --> GATCATCATGAGATTTTCAAATGTTCTT------CTTCAACCCATTGGTC  Raphanus raphanistrum subsp. landra
EX753493       --> GATCATCATGAGATTTTCAAATGTTCTT------CTTCAACCCATTGGTC  Raphanus raphanistrum subsp. maritimus
EV570932       --> ....................................TCAACCCATTGGTC  Raphanus raphanistrum subsp. landra
EX767361       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               251    -    301
UN16712        --> CGTACACAGAAGCTGCTGCATTCAGGTTCTTTCTCGAACCGGGTCCATCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD549304       <-- CGTACACAGAAGCTGCTGCATTCAGATTCTTTCTCGAACCGGGTCCATCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY938534       <-- CGTACACAGAAGCTGCTGCATTCAGGTTCTTTCTCGAACCGGGTCCATCC  Raphanus sativus cv Early Scarlet Globe
EX897037       <-- CGTACACAGAAGCTGCTGCATTCAGGTTCTTTCTCGAACCGGGTCAATCC  Raphanus sativus cv Early Scarlet Globe
EX749915       <-- -GTACACAGAAGCTGCTGCATTCAGGTTCTTTCTTGAACCGGGTCCATCC  Raphanus raphanistrum subsp. maritimus
EV536108       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD938169       <-- ..................................................  Raphanus sativus var. oleiformis
EV552608       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD940824       <-- ..................................................  Raphanus sativus var. oleiformis
FD540456       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV528434       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV532429       --> CGTACACAGAAGCTGCTGTATTCAAGTTCTTTCTCGAACCGGGTCCATCC  Raphanus raphanistrum subsp. maritimus
FD545373       --> CGTACACAGAAGCTGCTGCATTCAGATTCTTTCTCGAACCGGGTCCATCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX900864       --> CGTACACAGAAGCTGCTGCATTCAGGTTCTTTCTCGAACCGGGTCAATCC  Raphanus sativus cv Early Scarlet Globe
EY934647       --> CGTACACAGAAGCTGCTGCATTCAGGTTCTTTCTCGAACCGGGTCCATCC  Raphanus sativus cv Early Scarlet Globe
FD536962       --> CGTACACAGAAGCTGCTGCATTCAGGTTCTTTCTCGAACCGGGTCCATCC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV540631       --> CGTACACAGAAGCTGCTGCATTCAGGTTCTTTCTTGAACCGGGTCCATCC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV570933       --> CGTACACAGAAGCTGCTGCATTCAGGTTCTTTCTTGAACCGGGTCCATCC  Raphanus raphanistrum subsp. landra
EX753493       --> CGTACACAGAAGCTGCTGCATTCAGGTTCTTTCTTGAACCGGGTCCATCC  Raphanus raphanistrum subsp. maritimus
EV570932       --> CGTACACAGAAGCTGCTGCATTCAGGTTCTTTCTTGAACCGGGTCCATCC  Raphanus raphanistrum subsp. landra
EX767361       --> ..............................TTCTCGAACCGGGTCCATCC  Raphanus raphanistrum subsp. raphanistrum (NY)

               301    -    351
UN16712        --> TGATTCATACCGGTTGGTTTATTCGATAACCGACGCTTATACCGCTTCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD549304       <-- TGATTCATACCGGTTGGTTTATTCGATAACCGACGCTTATACCGCTTCAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY938534       <-- TGATTCATACCGGTTGGTTTATTCGATAACCGACGCTTATACCGCTTCAA  Raphanus sativus cv Early Scarlet Globe
EX897037       <-- TGATTCATACCGGTTGGTTTATTCGATAACCGACGCTTATACCGCTTCAA  Raphanus sativus cv Early Scarlet Globe
EX749915       <-- TGATTCATACCGGTTGGTTTATTCGATAACCGACGCTTATACCGCTTCAA  Raphanus raphanistrum subsp. maritimus
EV536108       <-- .............................................TTCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD938169       <-- ..................................................  Raphanus sativus var. oleiformis
EV552608       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD940824       <-- ..................................................  Raphanus sativus var. oleiformis
FD540456       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV528434       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV532429       --> TGATTCATACCGGTTGGTTTATTCGATAACCGACGCTTATACCGCTTCAA  Raphanus raphanistrum subsp. maritimus
FD545373       --> TGATTCATACCGGTTGGTTTATTCCATAACCGACGCTTATACCGCTT...  Raphanus raphanistrum subsp. raphanistrum (NY)
EX900864       --> TGATTCATACCGGTTGGTTTATTCGATAACCGACGCTTATACCGCTTCAA  Raphanus sativus cv Early Scarlet Globe
EY934647       --> TGATTCATACCGGTTGGTTTATTCGATAACCGACGCTTATACCGCTTCAA  Raphanus sativus cv Early Scarlet Globe
FD536962       --> TGATTCATACCGGTTGGTTTATTCGATAACCGACGCTTATACCGCTTCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV540631       --> TGATTCATACCGGTTGGTTTATTCGATAACCGACGCTTATACCGCTTCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV570933       --> TGATTCATACCGGTTGGTTTATTCGATAACCGACGCTTATACCGCTTCAA  Raphanus raphanistrum subsp. landra
EX753493       --> TGATTCATACCGGTTGGTTTATTCGATAACCGACGCTTATACCGCTTCAA  Raphanus raphanistrum subsp. maritimus
EV570932       --> TGATTCATACCGGTTGGTTTATTCGATAACCGACGCTTATACCGCTTCAA  Raphanus raphanistrum subsp. landra
EX767361       --> TGATTCATACCGGTTGGTTTATTCGATAACCGACGCTTATACCGCTTCAA  Raphanus raphanistrum subsp. raphanistrum (NY)

               351    -    401
UN16712        --> CACGGATGCCAAATTCTCTTTCCCTTTTGGGAAAGCCACGTCTCCAGCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD549304       <-- CACGGATGCCAAATTCTCTTTCCCTTTTGGGAAAGCCACGTCTCCAGCAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY938534       <-- TACAGAAGCCAAATTCTCTTTCCCCTTTGGGAAAGCCACGTCTCCAGCAG  Raphanus sativus cv Early Scarlet Globe
EX897037       <-- TACAGAAGCCAAATTCTCTTTCCCCTTTGGGAAAGCCACGTCTCCAGCAG  Raphanus sativus cv Early Scarlet Globe
EX749915       <-- CACGGATGCCAAATTCTCTTTCCCTTTTGGGAAAGCCACGTCTCCAGCAG  Raphanus raphanistrum subsp. maritimus
EV536108       <-- CACGGATGCCAAATTCTCTTTCCCTTTTGGGAAAGCCACGTCTCCAGCAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD938169       <-- ....GATGCCAAATTCTCTTTCCCTTTTGGGAAAGCCACGTCTCCAGCAG  Raphanus sativus var. oleiformis
EV552608       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD940824       <-- ..................................................  Raphanus sativus var. oleiformis
FD540456       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV528434       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV532429       --> CACGGATGCCAAATTCTCTTTCCCTTTTGGGAAAGCCACGTCTCCAGCAG  Raphanus raphanistrum subsp. maritimus
FD545373       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX900864       --> TACAGAAGCCAAATTCTCTTTCCCCTTTGGGAAAGCCACGTCTCCAGCAG  Raphanus sativus cv Early Scarlet Globe
EY934647       --> TACAGAAGCCAAATTCTCTTTCCCCTTTGGGAAAGCCACGTCTCCAGCAG  Raphanus sativus cv Early Scarlet Globe
FD536962       --> CACGGATGCCAAATTCTCTTTCCCTTTTGGGAAAGCCACGTCTCCAGCAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV540631       --> CACGGATGCCAAATTCTCTTTCCCTTTTGGGAAAGCCACGTCTCCAGCAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV570933       --> CACGGATGCAAAATTCTCTTTCCCTTTTGGGAAAGCCACGTCTC-AGCAA  Raphanus raphanistrum subsp. landra
EX753493       --> CACGGATGCCAAATTCTCTTTCCCTTTTGGGAAAGCCACGTCTCCAGCAG  Raphanus raphanistrum subsp. maritimus
EV570932       --> CACGGATGCAAAATTCTCTTTCCCTTTTGGGAAAGCCACGTCTC-AGCAA  Raphanus raphanistrum subsp. landra
EX767361       --> CACGGATGCCAAATTCTCTTTCCCTTTTGGGAAAGCCACGTCTCCAGCAG  Raphanus raphanistrum subsp. raphanistrum (NY)

               401    -    451
UN16712        --> CTGTACCGGTCCGGCCTTTCCTACAAGAGATTGATATTTCAACGTCTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD549304       <-- CCGTACCGGTTCGGCCTTTCCTACAAGAGATTGATATTTCAACGTCTTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY938534       <-- CTGTACCGGTCCGGCCTTTCCTACAAGAGATTGATGTTTCAACGTCTTTG  Raphanus sativus cv Early Scarlet Globe
EX897037       <-- CTGTACCGGTCCGGCCTTTCCTACAAGAGATTGATATTTCAACGTCTTTG  Raphanus sativus cv Early Scarlet Globe
EX749915       <-- CAGTACCGGTCCGGCCTTTCCTACAAGAGATTGATATTTCAACGTCTTTG  Raphanus raphanistrum subsp. maritimus
EV536108       <-- CTGTACCGGTCCGGCCTTTCCTACAAGAGATCGATATTTCAACGTCTTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD938169       <-- CTGTACCGGTCCGGCCTTTCCTACAAGAGATTGATATTTCAACGTCTTTG  Raphanus sativus var. oleiformis
EV552608       <-- ........................AAGAGATTGATATTTCAACGTCTTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD940824       <-- ...........................AGATTGATATT-CAACGTCTTTG  Raphanus sativus var. oleiformis
FD540456       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV528434       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV532429       --> CTGTACCGGTCCGGCCTTTCCTACAAAAAATTGATATTTCAACGTCTTTG  Raphanus raphanistrum subsp. maritimus
FD545373       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX900864       --> CTGTACCGGTCCGGCCTTTCCTACAAAAAATTGATATTTCAACGTCTTTG  Raphanus sativus cv Early Scarlet Globe
EY934647       --> CTGTACCGGTCCGGCCTTTCCTACAAGAGATTGATGTTTCAACGTCTTTG  Raphanus sativus cv Early Scarlet Globe
FD536962       --> CTGTACCGGTTCGGCCTTTCCTACAAGAGATTGATATTTCAACGTCTTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV540631       --> CTGTACCGGTCCGGCCTTTCCTACAAGAGATCGATATTTCAACGTCTTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV570933       --> CAGTACCGGTCCGGCCTTTCCTACAAGAGATTGGTATTTCAACGTCTTTG  Raphanus raphanistrum subsp. landra
EX753493       --> CAGTACCGGTCCGGCCTTTCCTACAAGAAATTGATATTTCAACGTCTTTG  Raphanus raphanistrum subsp. maritimus
EV570932       --> CAGTACCGGTCCGGCCTTTCCTACAAGAGATTGGTATTTCAACGTCTTTG  Raphanus raphanistrum subsp. landra
EX767361       --> CCGTACCGGTTCGGCCTTTCCTACAAGAGATTGATATTTCAACGTCTTTG  Raphanus raphanistrum subsp. raphanistrum (NY)

               451    -    501
UN16712        --> ATTAGCTCAAGAAGTGTGACTGCTGTTGTGCATTTGCCTTTGGCTGGTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD549304       <-- ATTAGCTCAAGAAGTGTGACTGCTGTTGTGCATTTGCCTTTGGCTGGTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY938534       <-- ATTAGCTCAAGAAGTGTGACCGCTGTTGTGCATTTGCCTTTGGCTGGTCT  Raphanus sativus cv Early Scarlet Globe
EX897037       <-- ATTAGCTCAAGAAGTGTGACTGCTGTTGTGCATTTGCCTTTGGCTGGTCT  Raphanus sativus cv Early Scarlet Globe
EX749915       <-- ATCAGCTCAAGAAGTGTGACTGCTGTTGTGCATTTGCCTTTGGCTGGTCT  Raphanus raphanistrum subsp. maritimus
EV536108       <-- ATTAGCTCAAGAAGTGTGACTGCTGTTGTGCATTTGCCTTTGGCTGGTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD938169       <-- ATTAGCTCAAGAAGTGTGACTGCTGTTGTGCATTTGCCTTTGGCTGGTCT  Raphanus sativus var. oleiformis
EV552608       <-- ATTAGCTCAAGAAGTGTGACTGCTGTTGTGCATTTGCCTTTGGCTGGTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD940824       <-- ATTAGCTCAAGAAGTGTGACTGCTGTTGTGCATTTGCCTTTGGCTGGTCT  Raphanus sativus var. oleiformis
FD540456       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV528434       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV532429       --> ATTAGCTCAAGAAGTGTGACTGCTGTTGTGCATTTGCCTTTGGCTGGTCT  Raphanus raphanistrum subsp. maritimus
FD545373       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX900864       --> ATTAGCTCAAGAAGTGTGACTGCTGTTGTGCATTTGCCTTTGGCTGGTCT  Raphanus sativus cv Early Scarlet Globe
EY934647       --> ATTAGCTCAAGAAGTGTGACCGCTGTTGTGCATTTGCCTTTGGCTGGTCT  Raphanus sativus cv Early Scarlet Globe
FD536962       --> ATTAGCTCAAGAAGTGTGACTGCTGTTGTGCATTTGCCTTTGGCTGGTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV540631       --> ATTAGCTCAAGAAGTGTGACTGCTGTTGTGCATTTGCCTTTGGCTGGTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV570933       --> ATCAGCTCAAGAAGTGTGACTGCTGTTGTGCATTTGCCTTTGGCTGGTCT  Raphanus raphanistrum subsp. landra
EX753493       --> ATCAGCTCAAGAAGTGTGACTGCTGTTGTGCATTTGCCTTTGGCTGGTCT  Raphanus raphanistrum subsp. maritimus
EV570932       --> ATCAGCTCAAGAAGTGTGACTGCTGTTGTGCATTTGCCTTTGGCTGGTCT  Raphanus raphanistrum subsp. landra
EX767361       --> ATTAGCTCAAGAAGTGTGACTGCTGTTGTGCATTTGCCTTTGGCTGGTCT  Raphanus raphanistrum subsp. raphanistrum (NY)

               501    -    551
UN16712        --> TGCAGCCGGAGGTAACATTCCGTTTGAAGCTGAAGGCGGACTCGCTCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD549304       <-- TGCAGCCGGAGGTAACATTCCGTTAGAAGCTGAAGGCGGACTCGCTCTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY938534       <-- TGCAGCCGGAGGTAACATCCCGTTTGAAGCTGAAGGCGGACTTGCTCTTT  Raphanus sativus cv Early Scarlet Globe
EX897037       <-- TGCAGCCGGAGGTAACATCCCGTTTGAAGCTGAAGGCGGACTTGCTCTTT  Raphanus sativus cv Early Scarlet Globe
EX749915       <-- TGCAGCCGGAGGTAACATTCCGTTTGAAGCTGAAGGCGGACTCGCTCTTT  Raphanus raphanistrum subsp. maritimus
EV536108       <-- TGCAGCCGGAGGTAACATTCCGTTTGAAGCTGAAGGCGGACTCGCTCTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD938169       <-- TGCAGCCGGAGGTAACATTCCGTTTGAAGCTGAAGGCGGACTCGCTCTTT  Raphanus sativus var. oleiformis
EV552608       <-- TGCAGCCGGAGG-AACATTCCGTTAGAAGCTGAAGGCGGACTCGCTCTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD940824       <-- TGCAGCCGGAGGTAACATTCCGTTTGAAGCTGAAGGCGGACTCGCTCTTT  Raphanus sativus var. oleiformis
FD540456       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV528434       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV532429       --> TGCAGCCGGAGGTAACATTCCGTTTGAAGCTGAAGGCGGACTCCCTCTTT  Raphanus raphanistrum subsp. maritimus
FD545373       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX900864       --> TGCAGCCGGAGGTAACATCCCGTTTGAAGCTGAAGGCGGACTTGCTCTTT  Raphanus sativus cv Early Scarlet Globe
EY934647       --> TGCAGCCGGAGGTAACATCCCGTTTGAAGCTGAAGGCGGACTTGCTCTTT  Raphanus sativus cv Early Scarlet Globe
FD536962       --> TGCAGCCGGAGGTAACATTCCGTTTGAAGCTGAAGGCGGACTCGCTCTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV540631       --> TGCAGCCGGAGGTAACATTCCGTTTGAAGCTGAAGGCGGACTCGCTCTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV570933       --> TGCAGCCGGAGGTAACATTCCGTTTGAAGCTGAAGGCGGACTCGCTCTTT  Raphanus raphanistrum subsp. landra
EX753493       --> TGCAGCCGGAGGTAACATTCCGTTTGAAGCTGAAGGCGGACTCCCTCTTT  Raphanus raphanistrum subsp. maritimus
EV570932       --> TGCAGCCGGAGGTAACATTCCGTTTGAAGCTGAAGGCGGACTCGCTCTTT  Raphanus raphanistrum subsp. landra
EX767361       --> TGCAGCCGGAGGTAACATTCCGTTAGAAGCTGAAGGCGGACTCGCTCTTT  Raphanus raphanistrum subsp. raphanistrum (NY)

               551    -    601
UN16712        --> GGTGGCTTGCCGGAATCTGAAGGCAGAAGCACGGTGTCATCGGTGTCCGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD549304       <-- GGTGGCTTGCCGGAATCTGAAGGCAGAAGCACGGTGTCATCGGTGTCCGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY938534       <-- GGTGGCc...........................................  Raphanus sativus cv Early Scarlet Globe
EX897037       <-- GGTGGCTTGCCGGAATCTGAAGGCAGAAGCACGGTGTCATCGGTGTCCGC  Raphanus sativus cv Early Scarlet Globe
EX749915       <-- GGTGGCTTGCCGGAATCTGAAGGCAGAAGCACGGTGTCATCGGTGACCGA  Raphanus raphanistrum subsp. maritimus
EV536108       <-- GGTGGCTTGCCGGAATCTGAAGGCAGAAGCACGGTGTCATCGGTGTCCGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD938169       <-- GGTGGCTTGCCGGAATCTGAAGGCAGAAGCACGGTGTCATCGGTGTCCGA  Raphanus sativus var. oleiformis
EV552608       <-- GGTGGCTTGCCGGAATCTGAAGGCAGAAGCACGGTGTCATCGGTGTCCGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD940824       <-- GGTGGCTTGCCGGAATCTGAAGGCAGAAGCACGGTGTCATCGGTGTCCGA  Raphanus sativus var. oleiformis
FD540456       <-- ...............TCTGAAGGCAGAAGCATGGTGTCATCGGTGTCCGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV528434       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV532429       --> GGTGGCTTGCCGGAATCTGAAGGCAGAA......................  Raphanus raphanistrum subsp. maritimus
FD545373       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX900864       --> GGTGGCTTGCCGGAATCTGAAGGCAGAAGCACGGTGTCATCGGTGTCCGC  Raphanus sativus cv Early Scarlet Globe
EY934647       --> GGTGGCc...........................................  Raphanus sativus cv Early Scarlet Globe
FD536962       --> GGTGGCTTACCGGAATCTGAAGGCAGAAGCATGGTGTCATCGGTGTCCGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV540631       --> GGTGGCTTGCCGGAATCTGAAGGCAGAAGCACGGTGTCATCGGTGTCCGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV570933       --> GGTGGCTTGCCGGAATCTGAAGGCAGAAGCACGGTGTCATCGGTGTCCGA  Raphanus raphanistrum subsp. landra
EX753493       --> GGTGGCTTGCCGGAATCTGAAGGCAGAAGCACGGTGTCATCGGTGACCGA  Raphanus raphanistrum subsp. maritimus
EV570932       --> GGTGGCTTGCCGGAATCTGAAGGCAGAAGCACGGTGTCATCGGTGTCCGA  Raphanus raphanistrum subsp. landra
EX767361       --> GGTGGCTTGCCGGAATCTGAAGGCAGAAGCACGGTGTCATCGGTGTCCGC  Raphanus raphanistrum subsp. raphanistrum (NY)

               601    -    651
UN16712        --> AGCTTTGAGAACGCCGGGTCTATAACTCCCTGAAGGCGGTTGAGAACGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD549304       <-- AGCTTTGAGAACGCCGGGTCTATAACTCCCTGAAGGCGGTTGAGAACGTA
EY938534       <-- ..................................................
EX897037       <-- AGCTTTGAGAACGCCGGGTCTATAACTCCCTGAAGGCGGTTGAGAACGTA
EX749915       <-- AGCTTTGAGAACGCCGGGTCTATAACTCCCTGAAGGCGGTTGAGAACGTA
EV536108       <-- AGCTTTGAGAACGCTGGGTCTATAACTCCCTGAAGGCGGTTGAGAACGTA
FD938169       <-- AGCTTTGAGAACGCCGGGTCTATAACTCCCTGAAGGCGGTTGAGAACGTA
EV552608       <-- AGCTTTGAGAACGCCGGGTCTATAACCCCCTGAAGGCGGTTGAGAACGTA
FD940824       <-- AGCTTTGAGAACGCCGGGTCTATAACTCCCTGAAGGCGGTTGAGAACGTA
FD540456       <-- AGCTCTGAGAACGCCGGGTCTATAACTCC-TGAAGGCGGTTGAGAACGTA
EV528434       <-- .................................AGGCGGTTGAGAACGTA
EV532429       --> ..................................................
FD545373       --> ..................................................
EX900864       --> AGCTTTGAGAACGCCGGGTCTATAACTCCCTGAAGGCGGTT.........
EY934647       --> ..................................................
FD536962       --> AGCTCTGAGAACGCCGGGTCTATAACTCCCTGAAGGCGGTTGAGAACGTA
EV540631       --> AGCTTTGAGAACGCTGGGTCTATAACTCCCTGAAGGCGGTTGAGAACGTA
EV570933       --> AGCTTTGAGAACGCCGGGTCTATAACTCCCTGAAGGCGGTTGAGAACGTA
EX753493       --> AGCTTTGAGAACGCCGGGTCTATAACTCCCTGAAGGCGGTTGAGAACGTA
EV570932       --> AGCTTTGAGAACGCCGGGTCTATAACTCCCTGAAGGCGGTTGAGAACGTA
EX767361       --> AGCTTTGAGAACGCCGGGTCTATAACTCCCTGAAGGCGGTTGAGAACGTA

               651    -    701
UN16712        --> AGTGTACTTT-CCCCAGAGCTCAGGACGACTCTCCATGAGAGACAAGTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD549304       <-- AGTGTACTTT-CCCCAGAGCTCAGGACGACTCTCCATGAGAGACAAGTCA
EY938534       <-- ..................................................
EX897037       <-- AGTGTACTTT-CCCCAGAGCTCAGGACGACTCTCCATGAGAGACAAGTCA
EX749915       <-- AGTGTACTTT-ACCCAGAGCTCAGGACGACTCTCCATGAGAGACAAGTCA
EV536108       <-- AGTGTACTTT-CCCCAGAGCTCAGGACGACTCTCCATGAGAGACAAGTCA
FD938169       <-- AGTGTACTTT-CCCCAGAGCTCAGGACGACTCTCCATGAGAGACAAGTCA
EV552608       <-- AGTGTACTTT-CCCCAGAGCTCAGGACGACTCTACATGAGAGACAAGTCA
FD940824       <-- AGTGTACTTT-CCCCAGAGCTCAGGACGACTCTCCATGAGAGACAAGTCA
FD540456       <-- AGTGTACTTT-CCCCAGAGCTCAGGACGACTCTCCATGAGAGACAAGTCA
EV528434       <-- AGTGTACTTT-CCCCAGAGCTCAGGACGACTCTCCATGAGAGACAAGTCA
EV532429       --> ..................................................
FD545373       --> ..................................................
EX900864       --> ..................................................
EY934647       --> ..................................................
FD536962       --> AGTGTACTTT-CCCCAGAGCTCAGGACGACTCTCCATGAGAGACAAGTCA
EV540631       --> AGTGTACTTT-CCCCAGAGCTCAGGACGACTCTCCATGAGAGACAAGTCA
EV570933       --> AGTGTACTTT-CCCCAGAGCTCAGGACGACTCTCCATGAGAGACAAGTCA
EX753493       --> AGTGTACTTT-ACCCAGAGCTCAGGACGACTCTCCATGAGAGACAAGTCA
EV570932       --> AGTGTACTTTTCCCCAGAGCTCAGGACGACTCTCCATGAGAGACAAGTCA
EX767361       --> AGTGTACTTT-CCCTAGAGCTCAGGACGACTCTCCATGAGAGACAAGTCA

               701    -    751
UN16712        --> AGGACACGGTGAATGCACCAAACTCCAAAGCTCACAATCAAATCAGCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD549304       <-- AGGACGCGGTGAATGCACCAAACTCCAAAGCTCACAATCAAATCAGCTCT
EY938534       <-- ..................................................
EX897037       <-- AGGACACGGTGAATGCACCAAACTCCAAAGCTCACAATCAAATCAGCTCT
EX749915       <-- AGGACACGGTGAATGCACCAAACTCCAAAGCTCACAATCAAATCAGCTCT
EV536108       <-- AGGACACGGTGAATGCACCAAACTCCAAAGCTCACAATCAAATCAGCTCT
FD938169       <-- AGGACACGGTGAATGCACCAAACTCCAAAGCTCACAATCAAATCAGCTCT
EV552608       <-- AGGACGCGGTGAATGCACCAAACTCCAAAGCTCACAATCAAATCAGCTCT
FD940824       <-- AGGACACGGTGAATGCACCAAACTCCAAAGCTCACAATCAAATCAGCTCT
FD540456       <-- AGGACACGGTGAATGCACCAAACTCCAAAGCTCACAATCAAATCAGCTCT
EV528434       <-- AGGACACGGTGAATGCACCAAACTCCAAAGCTCACAATCAAATCAGCTCT
EV532429       --> ..................................................
FD545373       --> ..................................................
EX900864       --> ..................................................
EY934647       --> ..................................................
FD536962       --> AGGACACGGTGAATGCACCAAACTCCAAAGCTCACAATCAAATCAGCTCT
EV540631       --> AGGACACGGTGAATGCACCAAACTCCAAAGCTCACAATCAAATCAGCTCT
EV570933       --> AGGACACGGTGAATGCACCAAACTCCAAAGCTCACAATCAAATCAGCTCT
EX753493       --> AGGACACGGTGAATGCACCAAACTCCAAAGCTCACAATCAAATCAGCTCT
EV570932       --> AGGACACGGTGAATGCACCAAACTCCAAAGCTCACAATCAAATCAGCTCT
EX767361       --> AGGACGCGGTGAATGCACCAAACTCCAAAGCTCACAATCAAATCAGCTCT

               751    -    801
UN16712        --> CCAAACGCAACCATCTCCACAGTTAGGAACTGATGAAACCTGAGGCTCGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD549304       <-- CCAAACGCAACCc.....................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY938534       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX897037       <-- CCAAACGCAACCATCTCCc...............................  Raphanus sativus cv Early Scarlet Globe
EX749915       <-- CCAAACGCAACCATCTCCACAGTTAGGAACTGATGAAACCTGAGGCTCGC  Raphanus raphanistrum subsp. maritimus
EV536108       <-- CCAAACGCAACCATCTCCACAATTAGGAACTGATGAAACCTGAGGCTCGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD938169       <-- CCAAACGCAACCATCTCCACAATTAGGAACTGATGAAACCTGAGGCTCGC  Raphanus sativus var. oleiformis
EV552608       <-- CCAAACGCAACCATCTCCACAATTAGGAACTGATGAAACCTGAGGCTCGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD940824       <-- CCAAACGCAACCATCTCCACAATTAGGAACTGATGAAACCTGAGGCTCGC  Raphanus sativus var. oleiformis
FD540456       <-- CCAAACGCAACCATCTCCACAGTTAGGAACTGATGAAACCTGAGGCTCGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV528434       <-- CCAAACGCAACCATCTCCACAATTAGGAACTGATGAAACCTGAGGCTCGC  Raphanus raphanistrum subsp. maritimus
EV532429       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD545373       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX900864       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY934647       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD536962       --> CCAAACGCAACCATCTCCACAGTTAGGAACTGATGAAACCTGAGGCTCGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV540631       --> CCAAACGCAACCATCTCCACAa............................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV570933       --> CCAAACGCAACCATCTCCACAGTTAGGAACTGATGAAACCTGAGCCTCGC  Raphanus raphanistrum subsp. landra
EX753493       --> CCAAACGCAACCATCTCCACAGTTAGGAACTGATG...............  Raphanus raphanistrum subsp. maritimus
EV570932       --> CCAAACGCAACCATCTCCACAGTTAGGAACTGATGAAACCTGAGCCTCGC  Raphanus raphanistrum subsp. landra
EX767361       --> CCAAACG...........................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               801    -    851
UN16712        --> CCATGTGGCCCACTT-CTCGCGTTTCAGCTTCGTAGATAAACTTTTCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD549304       <-- ..................................................
EY938534       <-- ..................................................
EX897037       <-- ..................................................
EX749915       <-- ACATGTGGCCCACTT-CTCGCGTTCCAGCTTCGTAGATAAACTTTTCTCT
EV536108       <-- CCATGTGGCC-ACTT-CTCGCGTTTCAGCTTCATAGATAAACTTTTCTCT
FD938169       <-- CCATGTGGCCCACTT-CTCGTGTTTCAGCTTCGTAGATAAACTTTTCTCT
EV552608       <-- CCATGTGGCCCACTT-CTCGCGTTTCAGCTTCGTAGATAAACTTTTCTCT
FD940824       <-- CCATGTGGCCCACTT-CTCGTGTTTCAGCTTCGTAGATAAACTTTTCTCT
FD540456       <-- CCATGTGGCCCACTT-CTCGCGTTTCAGCTTCGTAGATAAACTTTTCTCT
EV528434       <-- CCATGTGGCCCACTT-CTCGTGTTTCAGCTTCGTAGATAAACTTTTCTCT
EV532429       --> ..................................................
FD545373       --> ..................................................
EX900864       --> ..................................................
EY934647       --> ..................................................
FD536962       --> CCATGTGGCCCACTT-CTCGCGTTTCAGCTTCGTAGAAAAACTTTTCTCT
EV540631       --> ..................................................
EV570933       --> CCATGTGGCCCACTT-CTCGCGTTTCAGCTTCGTAGATAAACTTTTCTCT
EX753493       --> ..................................................
EV570932       --> CCATGTGGCCCACTTTCTCGCGTTTCAGCTTCGTAGATAAACTTTTCTCT
EX767361       --> ..................................................

               851    -    901
UN16712        --> TGCAGCTACCTTGTCAATCAGTTCTTCATCGACTCCATCGCTTTGCCCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD549304       <-- ..................................................
EY938534       <-- ..................................................
EX897037       <-- ..................................................
EX749915       <-- TGCAGCTACCTTGTCTATCAGTTCTTCATCGACTCCATCc..........
EV536108       <-- TGCAGCTACCTTGTCAATCAGTTCTTCATCGACTCCATCGCTTTGCCCAA
FD938169       <-- TGCAGCTACCTTGTCAATCAGTTCTTCATCGACTCCATCGCTTTGCCCAA
EV552608       <-- TGCAGCTACCTTGTCAATCAGTTCTTCATCGACTCCATCGCTTTGCCCAA
FD940824       <-- TGCAGCTACCTTGTCAATCAGTTCTTCATCGACTCCATCGCTTTGCCCAA
FD540456       <-- TGCAGCTACCTTGTCAATCAGTTCTTCATCGACTCCGTCGCTTTGCCCAA
EV528434       <-- TGCAGCTACCTTGTCAATCAGTTCTTCATCGACTCCATCGCTTTGCCCAA
EV532429       --> ..................................................
FD545373       --> ..................................................
EX900864       --> ..................................................
EY934647       --> ..................................................
FD536962       --> TGCAGCTACCTTGTCAATCAGTTCTTCATCGACTCCGTCGCTTTG.....
EV540631       --> ..................................................
EV570933       --> TGCAGCTACCTTGTCTATCAGTTCTTCATCGACTCCATCGCTTTGCCCAA
EX753493       --> ..................................................
EV570932       --> TGCAGCTACCTTGTCTATCAGTTCTTCATCGACTCCATCGCTTTGCCCAA
EX767361       --> ..................................................

               901    -    951
UN16712        --> ACAACCATTCTGATCCTTCCAGTTTAATAAGCTTTAGTATACAGTTCCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD549304       <-- ..................................................
EY938534       <-- ..................................................
EX897037       <-- ..................................................
EX749915       <-- ..................................................
EV536108       <-- ACAACCATTCTGATCCTTCCAGTTTAATAAGCTTTAGTATACAGTTCCTG
FD938169       <-- ACAACCATTCTGATCCTTCCAGTTTAATAAGCTTTAGTATACAGTTCCTG
EV552608       <-- ACAACCATTCTGATCCTTCCAGTTTAATAAGCTTTAGTATACAGTTCCTG
FD940824       <-- ACAACCATTCTGATCCTTCCAGTTTAATAAGCTTTAGTATACAGTTCCTG
FD540456       <-- ACAACCATTCTGATCCTTCCAGTTTAATAAGCTTTAGTATACAGTTCCTG
EV528434       <-- ACAACCATTCTGATCCTTCCAGTTTAATAAGCTTTAGTATACAGTTCCTG
EV532429       --> ..................................................
FD545373       --> ..................................................
EX900864       --> ..................................................
EY934647       --> ..................................................
FD536962       --> ..................................................
EV540631       --> ..................................................
EV570933       --> ACAACCATTCTGATCCTTCCAGTTTAATAAGCTTTAGTATACAGTTCCTG
EX753493       --> ..................................................
EV570932       --> ACAACCATTCTGATCCTTCCAGTTTAATAAGCTTTAGTATACA.......
EX767361       --> ..................................................

               951    -   1001
UN16712        --> AACGACTGAAGGAGCTTAGCCTCTGCATCGACGGTAGAAGCAGCGTTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD549304       <-- ..................................................
EY938534       <-- ..................................................
EX897037       <-- ..................................................
EX749915       <-- ..................................................
EV536108       <-- AACGACTGAAGGAGCTTAGCCTCTGCATCGACc.................
FD938169       <-- AACGACTGAAGGAGCTTAGCCTCTGCATCGACGGTAGAAGCAGCGTTGTT
EV552608       <-- AACGACTGAAGAAGCTTAGCCTCGGCATCGACGGTAGAAGCAGCGTTGTT
FD940824       <-- AACGACTGAAGGAGCTTAGCCTCTGCATCGACGGTAGAAGCAGCGTTGTT
FD540456       <-- AACGACTGAAGGAGCTTAGCCTCTGCATCGACGGTAGAAGCAGCGTTGTT
EV528434       <-- AACGACTGAAGGAGCTTAGCCTCTGCATCGACGGTAGAAGCAGCGTTGTT
EV532429       --> ..................................................
FD545373       --> ..................................................
EX900864       --> ..................................................
EY934647       --> ..................................................
FD536962       --> ..................................................
EV540631       --> ..................................................
EV570933       --> AACGACTGAAGAAGCTT.................................
EX753493       --> ..................................................
EV570932       --> ..................................................
EX767361       --> ..................................................

               1001   -   1051
UN16712        --> GTTGTCTATATTTATCGGAGCTGATCTATTCCTGACTTCCTCACCAACAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD549304       <-- ..................................................
EY938534       <-- ..................................................
EX897037       <-- ..................................................
EX749915       <-- ..................................................
EV536108       <-- ..................................................
FD938169       <-- GTTGTCTATATTTATCGGAGC.............................
EV552608       <-- GTTGTCTATATTTATCGGAGCTGATCTATTCCTGACTTCCTCACCAACAG
FD940824       <-- GTTGTCTATATTTATCGGAGC.............................
FD540456       <-- GTTGTCTATATTTATCGGAGCTGATCTATTCCTGACTTCCTCACCAACAG
EV528434       <-- GTTGTCTATATTTATCGGAGCTGATCTATTCCTGACTTCCTCACCAACAG
EV532429       --> ..................................................
FD545373       --> ..................................................
EX900864       --> ..................................................
EY934647       --> ..................................................
FD536962       --> ..................................................
EV540631       --> ..................................................
EV570933       --> ..................................................
EX753493       --> ..................................................
EV570932       --> ..................................................
EX767361       --> ..................................................

               1051   -   1101
UN16712        --> CGCCATTCCTCTCTGCTACACCAAACTGCTCAAAGGGCTGTCTGGACCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD549304       <-- ..................................................
EY938534       <-- ..................................................
EX897037       <-- ..................................................
EX749915       <-- ..................................................
EV536108       <-- ..................................................
FD938169       <-- ..................................................
EV552608       <-- CGCCATTCCTCTCTGCTACACCAAACTGCTCAAAGGGCTGTCTGGACCAA
FD940824       <-- ..................................................
FD540456       <-- CGCCATTCCTCTCTGCTACACCAAACTGCTCAAAGGGCTGTCTGGACCAA
EV528434       <-- CGCCATTCCTCTCTGCTACACCAAACTGTTCAAAGGGCTGTCTGGACCAg
EV532429       --> ..................................................
FD545373       --> ..................................................
EX900864       --> ..................................................
EY934647       --> ..................................................
FD536962       --> ..................................................
EV540631       --> ..................................................
EV570933       --> ..................................................
EX753493       --> ..................................................
EV570932       --> ..................................................
EX767361       --> ..................................................

               1101   -   1151
UN16712        --> AGCGATCCAGTCCCTGTTGTTGCACTCTGTGGCAACGTGGTATATGCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD549304       <-- ..................................................
EY938534       <-- ..................................................
EX897037       <-- ..................................................
EX749915       <-- ..................................................
EV536108       <-- ..................................................
FD938169       <-- ..................................................
EV552608       <-- AGCGATCCAGTCCCTGTTGTTGCACTCTGTGGCAACGTGGTATATGCATC
FD940824       <-- ..................................................
FD540456       <-- AGCGATCCAGTCCCTGTTGTTGCACTCTGTGGCAACGTGGTATATGCATC
EV528434       <-- ag................................................
EV532429       --> ..................................................
FD545373       --> ..................................................
EX900864       --> ..................................................
EY934647       --> ..................................................
FD536962       --> ..................................................
EV540631       --> ..................................................
EV570933       --> ..................................................
EX753493       --> ..................................................
EV570932       --> ..................................................
EX767361       --> ..................................................

               1151   -   1201
UN16712        --> TCTGTAGCCACCTCTTGACTGAGAAATGGTTTCATAACCCGAGGAGGCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD549304       <-- ..................................................
EY938534       <-- ..................................................
EX897037       <-- ..................................................
EX749915       <-- ..................................................
EV536108       <-- ..................................................
FD938169       <-- ..................................................
EV552608       <-- TCTGTAGCCACCTCc...................................
FD940824       <-- ..................................................
FD540456       <-- TCTGTAGCCACCTCTTGACTGAGAAATGGTTTCATAACCCGAGGAGGCTA
EV528434       <-- ..................................................
EV532429       --> ..................................................
FD545373       --> ..................................................
EX900864       --> ..................................................
EY934647       --> ..................................................
FD536962       --> ..................................................
EV540631       --> ..................................................
EV570933       --> ..................................................
EX753493       --> ..................................................
EV570932       --> ..................................................
EX767361       --> ..................................................

               1201   -   1251
UN16712        --> CTCCAACCCTTGACCCCAGATTAGAATATAATGGTGATTCATTGCTTAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD549304       <-- ..................................................
EY938534       <-- ..................................................
EX897037       <-- ..................................................
EX749915       <-- ..................................................
EV536108       <-- ..................................................
FD938169       <-- ..................................................
EV552608       <-- ..................................................
FD940824       <-- ..................................................
FD540456       <-- CTCCAACCCTTGACCCCAGATTAGAATATAATGGTGATTCATTGCTTAAC
EV528434       <-- ..................................................
EV532429       --> ..................................................
FD545373       --> ..................................................
EX900864       --> ..................................................
EY934647       --> ..................................................
FD536962       --> ..................................................
EV540631       --> ..................................................
EV570933       --> ..................................................
EX753493       --> ..................................................
EV570932       --> ..................................................
EX767361       --> ..................................................

               1251   -   1301
UN16712        --> CGACCATACGAAGTGCTATTATACCCTGCTCCTCCAGTTGATGCATCCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD549304       <-- ..................................................
EY938534       <-- ..................................................
EX897037       <-- ..................................................
EX749915       <-- ..................................................
EV536108       <-- ..................................................
FD938169       <-- ..................................................
EV552608       <-- ..................................................
FD940824       <-- ..................................................
FD540456       <-- CGACCATACGAAGTGCTATTATACCCTGCTCCTCCAGTTGATGCATCCCG
EV528434       <-- ..................................................
EV532429       --> ..................................................
FD545373       --> ..................................................
EX900864       --> ..................................................
EY934647       --> ..................................................
FD536962       --> ..................................................
EV540631       --> ..................................................
EV570933       --> ..................................................
EX753493       --> ..................................................
EV570932       --> ..................................................
EX767361       --> ..................................................

               1301   -   1351
UN16712        --> GTATCCACTCTTGTTGTTTGGCGAATGCATGTTCCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD549304       <-- ......................................
EY938534       <-- ......................................
EX897037       <-- ......................................
EX749915       <-- ......................................
EV536108       <-- ......................................
FD938169       <-- ......................................
EV552608       <-- ......................................
FD940824       <-- ......................................
FD540456       <-- GTATCCACTCTTGTTGTTTGGCGAATGCATGTTCCTTC
EV528434       <-- ......................................
EV532429       --> ......................................
FD545373       --> ......................................
EX900864       --> ......................................
EY934647       --> ......................................
FD536962       --> ......................................
EV540631       --> ......................................
EV570933       --> ......................................
EX753493       --> ......................................
EV570932       --> ......................................
EX767361       --> ......................................