1      -     51
UN16769        --> GATTTCATTGTCAAACCAGAAAAAAATTGTTACAAAAACTTAGTCCACAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720827       <-- GATTTCATTGTCAAACCAGAAAAAAATTGTTACAAAAACTTAGTCCACAC
EY895084       <-- ..................................................
FD538421       <-- ..................................................
FD538544       <-- ..................................................
EY899269       --> ..................................................
EW732225       --> ..................................................
FD542315       --> ..................................................
FD542478       --> ..................................................
EX902377       --> ..................................................
EY930390       --> ..................................................

               51     -    101
UN16769        --> TCCCCATTTCTATATAAACATCAACTTAAGCAACAATAATAACACAAAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720827       <-- TCCCCATTTCTATATAAACATCAACTTAAGCAACAATAATAACACAAAAT
EY895084       <-- ......................................ggAACACAAAAT
FD538421       <-- .........................................ggACAAAAT
FD538544       <-- ..................................................
EY899269       --> ......................................ggAACACAAAAT
EW732225       --> ........................................gACACAAAAT
FD542315       --> .........................................ggACAAAAT
FD542478       --> .........................................ggACAAAAT
EX902377       --> ...........................................ggAAAAT
EY930390       --> ...........................................ggAAAAT

               101    -    151
UN16769        --> AAACCTTAACAAAAGAAA-GAAGAAAAAAAAAGAC-TAACAAAATGGCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720827       <-- AAA--CTAACAAAAGAAAAGAAGAAAAAAAAAGAC-TAACAAAATGGCCA  Raphanus sativus var. oleiformis
EY895084       <-- AAACCTTAACAAAAGAAA-GA--AAAAAAAAAGACTTAACAAAATGGCCA  Raphanus raphanistrum subsp. maritimus
FD538421       <-- AAACCTTAACAAAAGAAA-GA--AAAAAAAAAGACTTAACAAAATGGCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538544       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY899269       --> AAACCTTAACAAAAGAAA-GAA--AAAAAAAAGACTTAACAAAATGGCCA  Raphanus raphanistrum subsp. maritimus
EW732225       --> AAACCT-AACAAAAGAAAAGAAGAAAAAAAAAGAC-TAACAAAATGGCCA  Raphanus sativus cv Rat-Tail Radish #3870
FD542315       --> AAACCTTAACAAAAGAAA-GAA--AAAAAAAAGACTTAACAAAATGGCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542478       --> AAACCTTAACAAAAGAAA-GAA---AAAAAAAGAA-TAACAAAATGGCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX902377       --> AAACCT-AACAAAAGAAAAGAAGAAAAAAAAAGAC-TAACAAAATGGCCA  Raphanus sativus cv Rat-Tail Radish #3870
EY930390       --> AAACCT-AACAAAAGAAAAGAAGAAAAAAAAAGAC-TAACAAAATGGCCA  Raphanus sativus var. oleiformis

               151    -    201
UN16769        --> AGGCTTTTACTCTGTTTCCAACCCTTATGATACTCAGTTTCTTCATAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720827       <-- GGCCTTTTAGTCTGTTTCCAACCCTTATGATACTCAGTTTCTTCATAATC  Raphanus sativus var. oleiformis
EY895084       <-- AGGCTTTTACTCTGTTTCCAACCCTTATGATACTCAGTTTCCTCATAATC  Raphanus raphanistrum subsp. maritimus
FD538421       <-- AGGCTTTTACTCTGTTTCCAACCCTTATGATACTCAGTTTCTTCATAATC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538544       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY899269       --> AGGCTTTTACTCTGTTTCCAACCCTTATGATACTCAGTTTCCTCATAATC  Raphanus raphanistrum subsp. maritimus
EW732225       --> AGCCTTTTAGTCTGTTTCCAACCCTTATGACACTCAGTTTCTTCATAATC  Raphanus sativus cv Rat-Tail Radish #3870
FD542315       --> AGGCTTTTACTCTGTTTCCAACCCTTATGATACTCAGTTTCTTCATAATC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542478       --> AGGCTTTTACTCTGTTTCCAAGCCTTATGATACTCAGTTTCTTCATAATC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX902377       --> AGCCTTTTAGTCTGTTTCCAACCCTTATGATACTCAGTTTCTTCATAATC  Raphanus sativus cv Rat-Tail Radish #3870
EY930390       --> AGCCTTTTAGTCTGTTTCCAACCCTTATGATACTCAGTTTCTTCATAATC  Raphanus sativus var. oleiformis

               201    -    251
UN16769        --> TCTTCCCCTCTGATCCAAGCCGGCTTCACCAATGACATGGACGGTCTGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720827       <-- TCTTCCCCTTTGATCCAAGCCGGCTTCACCTATGACATGGACGGTCTGGA  Raphanus sativus var. oleiformis
EY895084       <-- TCTTCCCCTCTGATCCAAGCCGGCTTCACCAATGACATGGACGGTCTGGA  Raphanus raphanistrum subsp. maritimus
FD538421       <-- TCTTCCCCTCTGATCCAAGCCGGCTTTACCAATGACATGGACGGTCTGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538544       <-- ............................................TCTGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY899269       --> TCTTCCCCTCTGATCCAAGCCGGCTTCACCAATGACATGGACGGTCTGGA  Raphanus raphanistrum subsp. maritimus
EW732225       --> TCTTCCCCTTTGATCCAAGCCGGCTTCACCAATGACATGGACGGTCTGGA  Raphanus sativus cv Rat-Tail Radish #3870
FD542315       --> TCTTCCCCTCTGATCCAAGCCGGCTTTACCAATGACATGGACGGTCTGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542478       --> TCTTCCCCTCTGATCCAAGCCGGCTTCACCAATGACATGGACGGTCTGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX902377       --> TCTTCCCCTTTGATCCAAGCCGGCTTCACCAATGACATGGACGGTCTGGA  Raphanus sativus cv Rat-Tail Radish #3870
EY930390       --> TCTTCCCCTTTGATCCGAGCCGGCTTCACCAATGACATGGACGGTCTGGA  Raphanus sativus var. oleiformis

               251    -    301
UN16769        --> ATGGGCCACGAACGGTGTCCATGACCACTCCTCAGGCTGCCACGGTTCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720827       <-- ATGGGCCACGAACGGTGTCCATGACCACTCCTCAGGCTGCCACGGTTCAA
EY895084       <-- ATGGGCCACGAACGGTGTCCATGACCACTCCTCAGGCTGCCACGGTTCAA
FD538421       <-- ATGGGCCACGAACGGTGTCCATGACCACTCCTCAGGCTGCCACGGTTCAA
FD538544       <-- ATGGGCCACGAACGGTGTCCATGACCACTCCTCAGGCTGCCACGGTTCAA
EY899269       --> ATGGGCCACGAACGGTGTCCATGACCACTCCTCAGGCTGCCACGGTTCAA
EW732225       --> ATGGGCCACGAACGGTGTCCATGACCACTCCTCAGGCTGCCACGGTTCAA
FD542315       --> ATGGGCCACGAACGGTGTCCATGACCACTCCTCAGGCTGCCACGGTTCAA
FD542478       --> ATGGGCCACGAACGGTGTCCATGACCACTCCTCAGGCTGCCACGGTTCAA
EX902377       --> ATGGGCCACGAACGGTGTCCATGACCACTCCTCAGGCTGCCACGGTTCAA
EY930390       --> ATGGGCCACGAACGGTGTCCATGACCACTCCTCAGGCTGCCACGGTTCAA

               301    -    351
UN16769        --> TAGCAGATTGTATCGGGGCAGAGGAAGAGGAAATGGACACAGAGATCAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720827       <-- TAGCAGATTGTATCGGGGCAGAGGAAGAGGAAATGGACACAGAGATCAGC
EY895084       <-- TAGCAGATTGTATCGGGGCAGAGGAAGAGGAAATGGACACAGAGATCAGC
FD538421       <-- TAGCAGATTGTATCGGGGCAGAGGAAGAGGAAATGGACACAGAGATCAGC
FD538544       <-- TAGCAGATTGTATCGGGGCAGAGGAAGAGGAAATGGACACAGAGATCAGC
EY899269       --> TAGCAGATTGTATCGGGGCAGAGGAAGAGGAAATGGACACAGAGATCAGC
EW732225       --> TAGCAGATTGTATCGGGGCAGAGGAAGAGGAAATGGACACAGAAATCAGC
FD542315       --> TAGCAGATTGTATCGGGGCAGAGGAAGAGGAAATGGACACAGAGATCAGC
FD542478       --> TAGCAGATTGTATCGGGGCAGAGGAAGAGGAAATGGACACAGAGATCAGC
EX902377       --> TAGCAGATTGTATCGGGGCAGAGGAAGAGGAAATGGACACAGAAATCAGC
EY930390       --> TAGCAGATTGTATCGGGGCAGAGGAAGAGGAAATGGACACAGAGATCAGC

               351    -    401
UN16769        --> AGAAGAATATTGGCGACAACAAAGTACATAAGCTATCAATCTTTGAAGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720827       <-- AGAAGAATATTGCCGACAACAAAGTACATAAGCTATCAATCTTTGAAGCG
EY895084       <-- AGAAGAATATTGGCGACAACAAAGTACATAAGCTATCAATCTTTGAAGCG
FD538421       <-- AGAAGAATATTGGCGACAACAAAGTACATAAGCTATCAATCTTTGAAGCG
FD538544       <-- AGAAGAATATTGGCGACAACAAAGTACATAAGCTATCAATCTTTGAAGCG
EY899269       --> AGAAGAATATTGGCGACAACAAAGTACATAAGCTATCAATCTTTGAAGCG
EW732225       --> AGAAGAATATTGGCGACAACAAAGTACATAAGCTATCAATCTTTGAAGCG
FD542315       --> AGAAGAATATTGGCGACAACAAAGTACATAAGCTATCAATCTTTGGAGCG
FD542478       --> AGAAGAATATTGGCGACAACAAAGTACATAAGCTATCAATCTTTGAAGCG
EX902377       --> AGAAGAATATTGGCGACAACAAAGTACATAAGCTATCAATCTTTGAAGCG
EY930390       --> AGAAGAATATTGGCGACAACAAAGTACATAAGCTATCAATCTTTGAAGCG

               401    -    451
UN16769        --> GAACAGTGTGCCATGTTCGAGAAGAGGAGCGTCATATTATAATTGTCAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720827       <-- TAACAGTGTGCCATGTTCGAGAAGAGGAGCGTCATATTATAATTGTCAGA
EY895084       <-- GAACAGTGTGCCATGTTCGAGAAGAGGAGCGTCATATTATAATTGTCAGA
FD538421       <-- GAACAGTGTGCCATGTTCGAGAAGAGGAGCGTCATATTATAATTGTCAGA
FD538544       <-- GAACAGTGTGCCATGTTCGAGAAGAGGAGCTTCATATTATAATTGTCAGA
EY899269       --> GAACAGTGTGCCATGTTCGAGAAGAGGAGCGTCATATTATAATTGTCAGA
EW732225       --> GAACAGTGTGCCATGTTCGAGAAGAGGAGCGTCATATTATAATTGTCAGA
FD542315       --> GAACAGTGTGCCATGTTCGAGAAGAGGAGCGTCATATTATAATTGTCAGA
FD542478       --> GAACAGTGTGCCATGTTCGAGAAGAGGAGCTTCATATTATAATTGTCAGA
EX902377       --> GAACAGTGTGCCATGTTCGAGAAGAGGAGCGTCATATTATAATTGTCAGA
EY930390       --> GAACAGTGTGCCATGTTCGAGAAGAGGAGCGTCATATTATAATTGTCAGA

               451    -    501
UN16769        --> ACGGAGCTCAGGCTAATCCTTATAGTCGTGGTTGCAGCTCAATTGCTCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720827       <-- ACGGAGCTCAGGCTAATCCTTATAGTCGTGGTTGCAGCTCAATTGCTCGT
EY895084       <-- ACGGAGCTCAGGCTAATCCTTATAGTCGTGGTTGCAGCTCAATTGCTCGT
FD538421       <-- ACGGAGCTCAGGTTAATCCTTATAGTCGTGGTTGCAGCTCAATTGCTCGT
FD538544       <-- ACGGAGCTCAGGCTAATCCTTATAGTCGTGGTTGCAGCTCAATTGCTCGT
EY899269       --> ACGGAGCTCAGGCTAATCCTTATAGTCGTGGTTGCAGCTCAATTGCTCGT
EW732225       --> ACGGAGCTCAGGCTAATCCTTATAGTCGTGGTTGCAGCTCAATTGCTCGT
FD542315       --> ACGGAGC...........................................
FD542478       --> ACGGAGCTCAGGCTAATCCTTATAGTCGTGGTTGCAGCTCAATTGCTCGT
EX902377       --> ACGGAGCTCAGGCTAATCCTTATAGTCGTGGTTGCAGCTCAATTGCTCGT
EY930390       --> ACGGAGCTCAGGCTAATCCTTATAGTCGTGGTTGCAGCTCAATTGCTCGT

               501    -    551
UN16769        --> TGCAGGAGTTAGCGCTCCACAAAGAAGTTCTCCTTCTCTCTTCATTATGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720827       <-- TGCAGGAGTTAGCGCTCCACAAAGAAGTTCTCCTTCTTTCTTCATTTTGC
EY895084       <-- TGCAGGAGTTAGCGCTCCACAAAGAAGTTCTCCTTCTCTCTTCATTATGC
FD538421       <-- TGCAGGAGTTAGCGCTCCACAAAGAAGTTCTCCTTCTCTCTTCATTGTGC
FD538544       <-- TGCAGGAGTTAGCGCTCCACAAAGAAGTTCTCCTTCTCTCTTCATTATGC
EY899269       --> TGCAGGAGTTAGCGCTCCACAAAGAAGTTCTCCTTCTCTCTTCATTATGC
EW732225       --> TGCAGGAGTTAGCGCTCCACAAAGAAGTTCTCCTTCTCTCTTCATTATGC
FD542315       --> ..................................................
FD542478       --> TGCAGGAGTTAGCGCTCCACAAAGAAGTTCTCCTTCTCTCTTCATTATGC
EX902377       --> TGCAGGAGTTAGCGCTCCACAAAGAAGTTCTCCTTCTCTCTTCATTATGC
EY930390       --> TGCAGGAGTTAGCGCTCCACAAAGAAGTTCTCCTTCTTTCTTCATTTTGC

               551    -    601
UN16769        --> TGTCTTATAATTAATTATACGGTACTCACATAAGTTGGATTTGGATGTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720827       <-- TGTCTTATAATTAATTATACGGTACTCACATAAGTTGGATTTGGATGTGA
EY895084       <-- TGTCTTATAATTAATTATACGGTACTCACATAAGTTGGATTTGGATGTGA
FD538421       <-- TTTCTTATAATTAATTATACGGTACTCATAAAATTTGGATTTGGATGTGA
FD538544       <-- TTTCTTATAATTAATTATACGGTACTCATAAAATTTGGATTTGGATGTGA
EY899269       --> TGTCTTATAATTAATTATACGGTACTCACATAAGTTGGATTTGGATGTGA
EW732225       --> TGTCTTATAATTAATTATACGGTACTCACATAAGTTGGATTTGGATGTGA
FD542315       --> ..................................................
FD542478       --> TTTCTTATAATTAATTATACGGTACTCATAAAATTTGGATTTGGATGTGA
EX902377       --> TGTCTTATAATTAATTATACGGTACTCACATAAGTTGGATTTGGATGTGA
EY930390       --> TGTCTTATAATTAATTATACGGTACTCACATAAGTTGGATTTGGATGTGA

               601    -    651
UN16769        --> ATGACCTTTGTTTGTTCCGTGATGATCCATGACGTGATTAGTGTTTCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720827       <-- ATGACCTTTGTTTGTTCCATGATGATCCATGACGTGATTAGTGTTTCTTT
EY895084       <-- ATGACCTTTGTTTGTTCCGTGATGATCCATGACGTGATTAGTGTTTCTTT
FD538421       <-- ATGACCTTTGTTTGTTCCGTGATAATCCATCAAGTGATTAGTGTTTCTTT
FD538544       <-- ATGACCTTTGTTTGTTCCGTGATGATCCATCAAGTGATTAGTGTTTCTTT
EY899269       --> ATGACCTTTGTTTGTTCCGTGATGATCCATGACGTGATTAGTGTTTCTTT
EW732225       --> ATGACCTTTGTTTGTTCCGTGATGATCCATGACGTGATTAGTGTTTCTTT
FD542315       --> ..................................................
FD542478       --> ATGACCTTTGTTTGTTCCGTGATGATCCATCAAGTGATTAGTGTTTCTTT
EX902377       --> ATGACCTTTGTTTGTTCCGTGATGATCCATGACGTGATTAGTGTTTCTTT
EY930390       --> ATGACCTTTGTTTGTTCCGTGATGATCCATGACGTGATTAGTGTTTCTTT

               651    -    701
UN16769        --> AAGCTTTTGAATATTTCATGTGTATATTCTCTGTATCTCTTGCTCAGTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720827       <-- AAGCTTTTGAATATTTCATGTGTATATTCTCTGTATCTCTTGCACAGTAA  Raphanus sativus var. oleiformis
EY895084       <-- AAGCTTTTGAATATTTCATGTGTATATTCTCTGTATCTCTTGCTCAGTAA  Raphanus raphanistrum subsp. maritimus
FD538421       <-- AAGCTTTTGAATATTTCATGTGTATATTCTCTGTATCTCTTGCACAGTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538544       <-- AAGCTTTTGAATATTTCATGTGTATATTCTCTGTATCTCTTGCTCAGTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY899269       --> AAGCTTTTGAATATTTCATGTGTATATTCTCTGTATCTCTTGCTCAGTAA  Raphanus raphanistrum subsp. maritimus
EW732225       --> AAGCTTTTGAATATTTCATGTGTATATTCTTTGTATCTCTTGCACAGTAA  Raphanus sativus cv Rat-Tail Radish #3870
FD542315       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542478       --> AAGCTTTTGAATATTTCATGTGTATATTCTCTGTATCTCTTGCTCAGTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX902377       --> AAGCTTTTGAATATTTCATGTGTATATTCTC...................  Raphanus sativus cv Rat-Tail Radish #3870
EY930390       --> AAGCTTTTGGATATTTCATGTGTATATTCTCTGTATCTCTTGCACAGTAA  Raphanus sativus var. oleiformis

               701    -    751
UN16769        --> TACTAAAAATAAGTTTGATCAAGACCAGGTTTGGTTTGATCCGGTAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720827       <-- TACTAAAAATAAGTTTGATCAAGACCAGGTTTGGTTTGATCCGGTAAA
EY895084       <-- TACTAAAAAaaaataagtttgacc........................
FD538421       <-- TAATAAAAAaaa....................................
FD538544       <-- TACTAAAAAaaattaagtttgatc........................
EY899269       --> TACTAAAAAaaaataagtttgacc........................
EW732225       --> TACTAAAAATAAGTCTGATCAAGACCAGGTTTGGTTTGATCC......
FD542315       --> ................................................
FD542478       --> TACTAAAAAaaattaagtttgatcaaaaaaa.................
EX902377       --> ................................................
EY930390       --> TACTAAAAATAAGTTTGATCAAGACCAGGTTTGGTTTGATC.......