RadishBase

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Alignment for radish unigene UN16803

               1      -     51
UN16803        --> ACATAGCAATCATTGTTGGATCTTGTCTTGTGTCTCATGATATATATGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY924843       <-- .........................................ATATATGAA
EY924236       <-- ..........................................TATATGAA
EV569946       <-- ..................................................
EX755590       <-- ..................................................
FD544289       <-- ..................................................
FD557582       <-- ..................................................
EY922352       <-- ..................................................
EY915035       <-- ..................................................
FD542936       <-- ..................................................
EY907045       <-- ..................................................
EY907749       <-- ..................................................
EY914856       <-- ..................................................
EY903612       --> ACATAGCAATCATTGTTGGATCTTGTCTTGTGTCTCATGATATATATGAA
EY910813       --> ...........gcTGTTGGATCCTTTCTTGTGTCTCATGATATATATGAA
EV574365       --> ...........................................ATATGAA
EX759638       --> ...........................................ATATGAA
EY918327       --> ...........................................ATATGAA
EY910961       --> ...........................................gTATGAA
FD539934       --> ..................................................
FD553660       --> ..................................................

               51     -    101
UN16803        --> TATGATCCAGTGTTATTCAATTAGTTTATTAAAAACATAGATTTGGAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY924843       <-- TATGATCCAGTGTTATTCAATTAGTTTATTAAAAACAGAGATTTGGAGGA  Raphanus raphanistrum subsp. landra
EY924236       <-- TATGATCCAGTGTTATTCAATTAGTTTATTAAAAACAGAGATTTGGAGGA  Raphanus raphanistrum subsp. landra
EV569946       <-- ...............................................GGA  Raphanus raphanistrum subsp. landra
EX755590       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544289       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD557582       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY922352       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY915035       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD542936       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907045       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907749       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY914856       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY903612       --> TATGATCCAGTTTTATTCAATTAG-CTATTAAAAACATAGATTTGGAGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY910813       --> TATGATCCAGTGTTATTCAATTAGTTTATTAAAAACATAGATTTGGAGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV574365       --> TATGATCCAGTGTTATTCAATTAGTTTATTAAAAACAGAGATTTGGAGGA  Raphanus raphanistrum subsp. landra
EX759638       --> TATGATCCAGTTTTATTCAATTAG-CTATTAAAAACATAGATTTGGAGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY918327       --> TATGATCCAGTGTTATTCAATTAGTTTATTAAAAACAGAGATTTGGAGGA  Raphanus raphanistrum subsp. landra
EY910961       --> TATGATCCAGTGTTATTCAATTAGTTTATTAAAAACATAGATTTGGAGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD539934       --> .ATGATCCAGTTTTATTCAATTAG-CTATTAAAAACATAGATTTGGAGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD553660       --> ..................................................  Raphanus raphanistrum subsp. landra

               101    -    151
UN16803        --> GTTCCAGATATATGTGTAAAGAGAAATCAGGGAGAGATAGATGAGGCTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY924843       <-- GTTCCAGATATATGTGTAAAGAGAAATCAGGGAGAGATAGATGAGGCTGC
EY924236       <-- GTTCCAGATATATGTGTAAAGAGAAATCAGGGAGAGATAGATGAGGCTGC
EV569946       <-- GTTCAAGATATATGTGTAAAGAGAAATCAGGGAGAGATAGATGAGGCTGC
EX755590       <-- ..................................................
FD544289       <-- ..................................................
FD557582       <-- ..................................................
EY922352       <-- ..................................................
EY915035       <-- ..................................................
FD542936       <-- ..................................................
EY907045       <-- ..................................................
EY907749       <-- ..................................................
EY914856       <-- ..................................................
EY903612       --> GTTCCAGCTAGATGTGTAAAGAGAAATCAGGGAGAGATAGATGAGGCTGC
EY910813       --> GTTCCAGATATATGTGTAAAGAGAAATCAGGTAGAGATAGAGGAGGTTGC
EV574365       --> GTTCAAGATATATGTGTAAAGAGAAATCAGGGAGAGATAGATGAGGCTGC
EX759638       --> GTTCCAGCTAGATGTGTAAAGAGAAATCAGGGAGAGATAGATGAGGCTGC
EY918327       --> GTTCCAGATATATGTGTAAAGAGAAATCAGGGAGAGATAGATGAGGCTGC
EY910961       --> GTTCCAGATATATGTGTAAAGAGAAATCAGGTAGAGATAGAGGAGGTTGC
FD539934       --> GTTCCAGCTAGATGTGTAAAGAGAAATCAGGGAGAGATAGATGAGGCTGC
FD553660       --> ..................................................

               151    -    201
UN16803        --> TTCAAGGAGGATTTTATAGAGAGCTTCAGGTTGGGAGAAAAATGCAGAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY924843       <-- TTCAAGGAGGATTTTATAGAGAGCTTCAGGTTGGGAGAAAAATGCAGAGT  Raphanus raphanistrum subsp. landra
EY924236       <-- TTCAAGGAGGATTTTATAGAGAGCTTCAGGTTGGGAGAAAAATGCAGAGT  Raphanus raphanistrum subsp. landra
EV569946       <-- TTCAAGGAGGATTTTATAGAGAGCTTCAGGTTGGGAGAAAAATGCAGAGT  Raphanus raphanistrum subsp. landra
EX755590       <-- ..........................CAGGTTGTGAGAAAAATGCAGAGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544289       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD557582       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY922352       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY915035       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD542936       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907045       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907749       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY914856       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY903612       --> TTCAAGGAGGATTTTGTAGAGAGCTTCAGGTTGTGAGAAAAATGCAGAGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY910813       --> TTCAAGGAGGATTTTATAGAGAGCTTCAGGTTGGGAGAAAAATGCAGAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV574365       --> TTCAAGGAGGATTTTATAGAGAGCTTCAGGTTGGGAGAAAAATGCAGAGT  Raphanus raphanistrum subsp. landra
EX759638       --> TTCAAGGAGGATTTTGTAGAGAGCTTCAGGTTGTGAGAAAAATGCAGAGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY918327       --> TTCAAGGAGGATTTTATAGAGAGCTTCAGGTTGGGAGAAAAATGCAGAGT  Raphanus raphanistrum subsp. landra
EY910961       --> TTCAAGGAGGATTTTATAGAGAGCTTCAGGTTGGGAGAAAAATGCAGAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD539934       --> TTCAAGGAGGATTTTGTAAAGAGCTTCAGGTTGTGAGAAAAATGCAAAGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD553660       --> ..................................................  Raphanus raphanistrum subsp. landra

               201    -    251
UN16803        --> GATCACTCTCTTGAAGAAGGAAGTATTGAGCAGGAGGCCAGAGGGTAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY924843       <-- GATCACTCTCTTGAAGAAGGAAGTATTGAGCAGGAGGCCAGAGGGTAACC  Raphanus raphanistrum subsp. landra
EY924236       <-- GATCACTCTCTTGAAGAAGGAAGTATTGAGCAGGAGGCCAGAGGGTAACC  Raphanus raphanistrum subsp. landra
EV569946       <-- GATCACTCTCTTGAAGAAGGAAGTATTGAGCAGGAGGCCAGAGGGTAACC  Raphanus raphanistrum subsp. landra
EX755590       <-- GATCACTCTCTTCAAGAAGGAAGTACTGAGCAGGAGGCCATAGGGTAACC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544289       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD557582       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY922352       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY915035       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD542936       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907045       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907749       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY914856       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY903612       --> GATCACTCTCTTCAAGAAGGAAGTACTGAGCAGGAGGCCATAGGGTAACC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY910813       --> GATCACTCTCTTCAAGAAGGAAGTATTGAGCAGGAGGCCAGAGGGTAACC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV574365       --> GATCACTCTCTTGAAGAAGGAAGTATTGAGCAGGAGGCCAGAGGGTAACC  Raphanus raphanistrum subsp. landra
EX759638       --> GATCACTCTCTTCAAGAAGGAAGTACTGAGCAGGAGGCCATAGGGTAACC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY918327       --> GATCACTCTCTTGAAGAAGGAAGTATTGAGCAGGAGGCCAGAGGGTAACC  Raphanus raphanistrum subsp. landra
EY910961       --> GATCACTCTCTTCAAGAAGGAAGTATTGAGCAGGAGGCCAGAGGGTAACC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD539934       --> GATCACTCTCTTCAAGAAGGAAGTACTGAGCAGGAGGCCATAGGGTAACC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD553660       --> GATCACTCTCTTGAAAAAGGAAGTATTGAGCAGGAGGCCAGAAGGTAACC  Raphanus raphanistrum subsp. landra

               251    -    301
UN16803        --> ATTAAGTCCTGACGACTTGATTGGAACATATGGTCCTTGCCTGTCTTAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY924843       <-- ATTAAGTCCTGACGGCTTGATTGGAACATATGGTCCTTGCCTGTCTTAAC
EY924236       <-- ATTAAGTCCTGACGGCTTGATTGGAACATATGGTCCTTGCCTGTCTTAAC
EV569946       <-- ATTAAGTCCTGACGACTTGATTGGAACATATGGTCCTTGCCTGTCTTAAC
EX755590       <-- ATTAAGTC-TGACGACTTGATTGGAACATATGGTCCTTGCCTGTCTTAAC
FD544289       <-- ........................................CTGTCTTAAC
FD557582       <-- ............................................CTTAAC
EY922352       <-- ..................................................
EY915035       <-- ..................................................
FD542936       <-- ..................................................
EY907045       <-- ..................................................
EY907749       <-- ..................................................
EY914856       <-- ..................................................
EY903612       --> ATTAAGTCCTGACGACTTGATTGGAACATATGGTCCTTGCCTGTCTTAAC
EY910813       --> ATTAAGTCCTGACGACTTGATTGGAACATATGGTCCTTGCCTGTCTTAAC
EV574365       --> ATTAAGTCCTGACGACTTGATTGGAACATATGGTCCTTGCCTGTCTTAAC
EX759638       --> ATTAAGTCCTGACGACTTGATTGGAACATATGGTCCTTGCCTGTCTTAAC
EY918327       --> ATTAAGTCCTGACGACTTGATTGGAACATATGGTCCTTGCCTGTCTTAAC
EY910961       --> ATTAAGTCCTGACGACTTGATTGGAACATATGGTCCTTGCCTGTCTTAAC
FD539934       --> ATTAAGTCCTGACGACTTGATTGGAGCATATGGTCCTTGCCTGTCTTAAC
FD553660       --> ATTAAGTCCTGACGACTTGATTGGAACATATGGTCCTTGCCTGTCTTAAC

               301    -    351
UN16803        --> GTAGACCCTTGGGATTTTGTCAGCCTCTGGTGCTGCTGGGATATCCACTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY924843       <-- GTAGACCCTTGGGATTTTGTCAGCCTCTGGTGCTGCTGGGATATCCACTA
EY924236       <-- GTAGACCCTTGGGATTTTGTCAGCCTCTGGTGCTGCTGGGATATCCACTA
EV569946       <-- GTAGACCCTTGGGATTTTGTCAGCCTCTGGTGCTGCTGGGATATCCACTA
EX755590       <-- GTAGACCCTTGGGATTTTGTCAGCCTCTGGTGCTGCTGGGATATCCACTA
FD544289       <-- GTAGACCCTTGGGATTTTGTCAGCCTCTGGTGCTGCTGGGATATCCACTA
FD557582       <-- GTAGACCCTTGGGATTTTGTCAGC-TCTGGTGCTGCTGGGATATCCACTA
EY922352       <-- .........TGGGATTTTGTCAGC-TCTGGTGCTGCTGGGATATCCACTA
EY915035       <-- .....................cagCTCTGGTGTTGCTGGGATATCCACTA
FD542936       <-- ................................................TA
EY907045       <-- ..................................................
EY907749       <-- ..................................................
EY914856       <-- ..................................................
EY903612       --> GTAGACCCTTGGGATTTTGTCAGCCTCTGGTGCTGCTGGGATATCCACTA
EY910813       --> GTAAACCCTTGGGATTTTGTCAGCCTCTGGTGTTGCTGGGATATCCACTA
EV574365       --> GTAGACCCTTGGGATTTTGTCAGCCTCTGGTGCTGCTGGGATATCCACTA
EX759638       --> GTAGACCCTTGGGATTTTGTCAGCCTCTGGTGCTGCTGGGATATCCACTA
EY918327       --> GTAGACCCTTGGGATTTTGTCAGCCTCTGGTGCTGCTGGGATATCCACTA
EY910961       --> GTAGACCCTTGGGATTTTGTCAGCCTCTGGTGTTGCTGGGATATCCACTA
FD539934       --> GTAAACCCTTGGGATTTTGTCAGCCTCTGGTGCTGCTGGGATATCCACTA
FD553660       --> GTAAACCCTTGGGATTTTGTCAGCCTCTGGTGCTGCTGGGATATCCACTA

               351    -    401
UN16803        --> TGCCTGCAAATGCCATGACAGGGGCTGGGCGCAGAAGTGTGGTGGCCAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY924843       <-- TGCCTGCAAATGCCATGACAGGGGCTGGGCGCAGAAGTGTGGTGGCCAGT  Raphanus raphanistrum subsp. landra
EY924236       <-- TGCCTGCAAATGCCATGACAGGGGCTGGGCGCAGAAGTGTGGTGGCCAGT  Raphanus raphanistrum subsp. landra
EV569946       <-- TGCCTGCAAATGCCATGACAGGGGCTGGGCGCAGAAGTGTGGTGGCCAGT  Raphanus raphanistrum subsp. landra
EX755590       <-- TGCCTGCAAATGCCATGACAGGAGCTGGGCGCAGAAGCGTGGTGGCCAGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544289       <-- TGCCTGCAAATGCCATGACAGGAGCTGGGCGCAGAAGTGTGGTGGCCAGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD557582       <-- TGCCTGCAAATGCCATGACAGGGGCTGGGCGCAGAAGTGTGGTGGCCAGT  Raphanus raphanistrum subsp. landra
EY922352       <-- TGCCTGCAAATGCCATGACAGGGGCTGGGCGCAGAAGTGTGGTGGCCAGT  Raphanus raphanistrum subsp. landra
EY915035       <-- TGCCTGCAAATGCCATGACAGGGGCTGGGCGCAGAAGTGTGGTGGCCAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD542936       <-- TGC-TGCAAATGCCATGACAGGAGCTGGGCGCAGAAGTGTGGTGGCCAGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907045       <-- .......AAATGCCATGACAGGAGCTGGGCGCAGAAGTGTGGTGGCCAGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907749       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY914856       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY903612       --> TGCCTGCAAATGCCATGACAGGAGCTGGGCGCAGAAGTGTGGTGGCCAGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY910813       --> TGCCTGCAAATGCCATGACAGGGGCTGGGCGCAAAAGTGTGGTGGCCAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV574365       --> TGCCTGCAAATGCCATGACAGGGGCTGGGCGCAGAAGTGTGGTGGCCAGT  Raphanus raphanistrum subsp. landra
EX759638       --> TGCCTGCAAATGCCATGACAGGAGCTGGGCGCAAAAGCGTGGTGGCCAGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY918327       --> TGCCTGCAAATGCCATGACAGGGGCTGGGCGCAGAAGTGTGGTGGCCAGT  Raphanus raphanistrum subsp. landra
EY910961       --> TGCCTGCAAATGCCATGACAGGGGCTGGGCGCAGAAGTGTGGTGGCCAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD539934       --> TGCCTGCAAATGCCATGACAGGAGCTGGGCGCAAAAGTGTGGTGGCCAGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD553660       --> TGCCTGCAAATGCCATGACAGGGGCTGGGCGCAAAAATGTGGTGGCCAGT  Raphanus raphanistrum subsp. landra

               401    -    451
UN16803        --> GTGTAATCCTCCATAGGGCTCTCGTTGTAATACTTGTCCTGGACATACTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY924843       <-- GTGTAATCCTCCATAGGGCTCTCGTTGTAATACTTGTCCTGGACATACTC
EY924236       <-- GTGTAATCCTCCATAGGGCTCTCGTTGTAATACTTGTCCTGGACATACTC
EV569946       <-- GTGTAATCCTCCATAGGGCTCTCGTTGTAATACTTGTCCTGGACATACTC
EX755590       <-- GTGTAATCCTCCATAGGGCTATCGTTGTAATACTTGTCCTGGACATACTC
FD544289       <-- GTGTAATCCTCCATAGGGCTCTCGTTGTAATACTTGTCCTGGACATACTC
FD557582       <-- GTGTAATCCTCCATAGGGCTCTCGTTGTAATACTTGTCCTGGACATACTC
EY922352       <-- GTGTAATCCTCCATAGGGCTCTCGTTGTAATACTTGTCCTGGACATACTC
EY915035       <-- GTGTAATCCTCCATAGGGCTCTCGTTGTAATACTTGTCCTGGACATACTC
FD542936       <-- GTGTAATCCTCCATAGGGCTCTCGTTGTAATACTTGTCCTGGACATACTC
EY907045       <-- GTGTAATCCTCCATAGGGCTCTCGTTGTAATACTTGTCCTGGACATACTC
EY907749       <-- ..................................................
EY914856       <-- ..................................................
EY903612       --> GTGTAATCCTCCATAGGGCTCTCGTTGTAATACTTGTCCTGGACATACTC
EY910813       --> GTGTAATCCTCCATAGGGCTCTCGTTGTAATACTTGTCCTGGACATACTC
EV574365       --> GTGTAATCCTCCATAGGGCTCTCGTTGTAATACTTGTCCTGGACATACTC
EX759638       --> GTGTAATCCTCCATAGGGCTATCGTTGTAATACTTGTCCTGGACATACTC
EY918327       --> GTGTAATCCTCCATAGGGCGCTCGTTGTAAT...................
EY910961       --> GTGTAATCCTCCATAGGGCTCTCGTTGTAATACTTGTCCTGGACATACTC
FD539934       --> GTGTAATCCTCCATAGGGCTCTCGTTGTAATACTTGTCCTGGACATACTC
FD553660       --> GTGTAATCCTCCATAGGGCTCTCGTTGTAATACTTGTCCTGGACATACTC

               451    -    501
UN16803        --> AGGTTTCATCATCATGCTTGTTGGGAGGTTCTCGGGTCCGTTTCCAAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY924843       <-- AGGTTTCATCATCATGCTTGTTGGGAGGTTCTCGGGTCCGTTTCCAAAAG
EY924236       <-- AGGTTTCATCATCATGCTTGTTGGGAGGTTCTCGGGTCCGTTTCCAAAAG
EV569946       <-- AGGTTTCATCATCATGCTTGTTGGGAGGTTCTCGGGTCCGTTTCCAAAAG
EX755590       <-- AGGTTTCATCATCATGCTTGTTGGGAGGTTCTCGGGTCCGTTTCCAAAAG
FD544289       <-- ATGTTTCATCATCATGCTTGTTGGGAGGTTCTCGGGTCCGTTTCCAAAAG
FD557582       <-- AGGTTTCATCATCATGCTTGTTGGGAGGTTCTCGGGTCCGTTTCCAAAAG
EY922352       <-- AGGTTTCATCATCATGCTTGTTGGGAGGTTCTCGGGTCCGTTTCCAAAAG
EY915035       <-- AGGTTTCATCATCATGCTTGTTGGGAGGTTCTCGGGTCCGTTTCCAAAAG
FD542936       <-- AGGTTTCATCATCATGCTTGTTGGGAGGTTCTCGGGTCCGTTTCCAAAAG
EY907045       <-- AGGTTTCATCATCATGCTTGTTGGGAGGTTCTCGGGTCCGTTTCCAAAAG
EY907749       <-- ..................................................
EY914856       <-- ..................................................
EY903612       --> AGGTTTCATCATCATGCTTGTTGGGAGGTTCTCGGGTCCGTTTCCAAAAG
EY910813       --> AGGTTTCATCATCATGCTTGTTGGGAGGTTCTCGGGTCCGTTTCCAAAAG
EV574365       --> AGGTTTCATCATCATGCTTGTTGGGAGGTTCTCGGGTCCGTTTCCAAAAG
EX759638       --> AGGTTTCATCATCATGCTTGTTGGGAGGTTCTCGGGTCCGTTTCCAAAAG
EY918327       --> ..................................................
EY910961       --> AGGTTTCATCATCATGCTTGTTGGGAGGTTCTCGGGTCCGTTTCCAAAAG
FD539934       --> ATGTTTCATCATCATGCTTGTTGGGAGGTTCTCGGGTCCGTTTCCAAAAG
FD553660       --> AGGTTTCATCATCATGCTTGTTGGGAGGTTCTCGGGTCCCTTTCCAAAAG

               501    -    551
UN16803        --> TGAAGTCCCATATCTTCTCAGCTTCCGACTCAATCAGCCCTGAACAGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY924843       <-- TGAAGTCCCATATCTTCTCAGCTTCCGACTCAATCAGCCCTGAACAGATC
EY924236       <-- TGAAGTCCCATATCTTCTCAGCTTCCGACTCAATCAGCCCTGAACAGATC
EV569946       <-- TGAAGTCCCATATCTTCTCAGCTTCCGACTCAATCAGCCCTGAACAGATC
EX755590       <-- TGAAGTCCCATATCTTCTCAGCTTCCGACTCAATCAGCCCTGAACAGATC
FD544289       <-- TGAAGTCCCATATCTTCTCAGCTTCCGACTCAATCAGCCCTGAACAGATC
FD557582       <-- TGAAGTCCCATATCTTCTCAGCTTCCGACTCAATCAGTCCTGAACAGATC
EY922352       <-- TGAAGTCCCATATCTTCTCAGCTTCCGACTCAATCAGCCCTGAACAGATC
EY915035       <-- TGAAGTCCCATATCTTCTCAGCTTCCGACTCAATCAGCCCTGAACAGATC
FD542936       <-- TGAAGTCCCATATCTTCTCAGCTTCCGACTCAATCAGCCCTGAACAGATC
EY907045       <-- TGAAGTCCCATATCTTCTCAGCTTCCGACTCAATCAGCCCTGAACAGATC
EY907749       <-- ..................................................
EY914856       <-- ..................................................
EY903612       --> TGAAGTCCCATATCTTCTCAGCTTCCGACTCAATCAGCCCTGAACAGATC
EY910813       --> TGAAGTCCCATATCTTCTCAGCTTCCGACTCAATCAGCCCTGAACAGATC
EV574365       --> TGAAGTCCCATATCTTCTCAGCTTCCGACTCAATCAGCCCTGAACAGATC
EX759638       --> TGAAGTCCCATATCTTCTCAGCTTCCGACTCAATCAGCCCTGAACAGATC
EY918327       --> ..................................................
EY910961       --> TGAAGTCCCATATCTTCTCAGCTTCCGACTCAATCAGCCCTGAACAGATC
FD539934       --> TGAAGTCCCATATCTTCTCAGCTTCCGACTCAATCAGCCCTGAACAGATC
FD553660       --> TGAAGTCCCATATCTTCT................................

               551    -    601
UN16803        --> TTCAATACTTCCTTGAGAACTGGGGGAATTACGGTACCAGGTTTGACCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY924843       <-- TTCAATACTTCCTTGAGAACTGGGGGAATTACGGTACCAGGTTTGACCAT  Raphanus raphanistrum subsp. landra
EY924236       <-- TTCAATACTTCCTTGAGAACTGGGGGAATTACGGTACCAGGTTTGACCAT  Raphanus raphanistrum subsp. landra
EV569946       <-- TTCAATACTTCCTTGAGAACTGGGGGAATTACGGTACCAGGTTTGACCAT  Raphanus raphanistrum subsp. landra
EX755590       <-- TTCAATACTTCCTTGAGAACTGGGGGAATTACAGTACCAGGTTTGACCAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544289       <-- TTCAATACTTCCTTGAGAACTGGGGGAATTACAGTACCAGGTTTGACCAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD557582       <-- TTCAATACTTCCTTGAGAACTGGGGGAATTACGGTACCAGGTTTGACCAT  Raphanus raphanistrum subsp. landra
EY922352       <-- TTCAATACTTCCTTGAGAACTGGGGGAATTACGGTACCAGGTTAGACCAT  Raphanus raphanistrum subsp. landra
EY915035       <-- TTCAATACTTCCTTGAGAACTGGGGGAATTACGGTACCAGGTTTGACCAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD542936       <-- TTCAATACTTCCTTGAGAACTGGGGGAATTACAGTACCAGGTTTGACCAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907045       <-- TTCAATACTTCCTTGAGAACTGGGGGAATTACAGTACCAGGTTTGACCAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907749       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY914856       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY903612       --> TTCAATACTTCCTTGAGAACTGGGGGAATTACAGTACCAGGTTTGACCAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY910813       --> TTCAATACTTCCTTGAGAACTGGGGGAATTACGGTACCAGGTTTGACCAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV574365       --> TTCAATACTTCCTTGAGAACTGGGGGAATTACGGTACCAGGTTTGACCAT  Raphanus raphanistrum subsp. landra
EX759638       --> TTCAATACTTCCTTGAGAACTGGGGGAATTACAGTACCAGGTTTGACCAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY918327       --> ..................................................  Raphanus raphanistrum subsp. landra
EY910961       --> TTCAATACTTCCTTGAGAACTGGGGGAATTACGGTACCAGGTTTGACCAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD539934       --> TTCAATACTTCCTTGAGAACTGGGGGAATTACAGTACCAGGTTTGACCAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD553660       --> ..................................................  Raphanus raphanistrum subsp. landra

               601    -    651
UN16803        --> GGCTGCTGCGACGTATACAGCCATGGAGACTTTGGAAGGATACTGGCACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY924843       <-- GGCTGCTGCGACGTATACAGCCATAGAGACTTTGGAAGGATACTGGCACA  Raphanus raphanistrum subsp. landra
EY924236       <-- GGCTGCTGCGACGTATACAGCCATAGAGACTTTGGAAGGATACTGGCACA  Raphanus raphanistrum subsp. landra
EV569946       <-- GGCTGCTGCGACGTATACAGCCATAGAGACTTTGGAAGGATACTGGCACA  Raphanus raphanistrum subsp. landra
EX755590       <-- GGCTGCTGCGACGTAAACAGCCATGGAGACTTTGGAAGGATACTGGCACA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544289       <-- GGCTGCTGCGACGTAAACAGCCATGGAGACTTTGGAAGGATACTGGCACA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD557582       <-- GGCTGCTGCGACGTATACAGCCATAGAGACTTTGGAAGGATACTGGCACA  Raphanus raphanistrum subsp. landra
EY922352       <-- GGCTGCTGCGACGTATACAGCCATAGAGACTTTGGAAGGATACTGGCACA  Raphanus raphanistrum subsp. landra
EY915035       <-- GGCTGCTGCGACGTATACAGCCATGGAGACCTTGGAAGGATACTGGCACA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD542936       <-- GGCTGCTGCGACGTAAACAGCCATGGAGACTTTGGAAGGATACTGGCACA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907045       <-- GGCTGCTGCGACGTAAACAGCCATGGAGACTTTGGAAGGATACTGGCACA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907749       <-- ...............aACAGCCATGGAG--ATTGGAAGGATA-TGGCACA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY914856       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY903612       --> GGCTGCTGCGACGTAAACAGCCATGGAGACTTTG................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY910813       --> GGCTGCTGCGACGTATACAGCCATGGAGACTTTGGAAGGATACTGGCACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV574365       --> GGCTGCTGCGACGTATACAGCCATAGAGACTTTGGAAGGATACTGGCACA  Raphanus raphanistrum subsp. landra
EX759638       --> GGCTGCTGCGACGTAAACAGCCATGGAGACTTTGGAAGGATACTGGCACA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY918327       --> ..................................................  Raphanus raphanistrum subsp. landra
EY910961       --> GGCTGCTGCGACGTATACAGCCATGGAGACCTTGGAAGGATACTGGCACA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD539934       --> GGCTGCTGCGACGTAAACAGCCATGGAGACTTTGGAAGGATACTGGCACA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD553660       --> ..................................................  Raphanus raphanistrum subsp. landra

               651    -    701
UN16803        --> TGGCAGCCGTCATGCTCCCTCCTCCAACGCTGTGGCTCACCAGAATGACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY924843       <-- CGGCAGCCGc........................................  Raphanus raphanistrum subsp. landra
EY924236       <-- CGGCAGCCGc........................................  Raphanus raphanistrum subsp. landra
EV569946       <-- TGGCAGCCGTCATGCTCCCTCCTCCAACGCTGTGGCTCACCAGGATGACC  Raphanus raphanistrum subsp. landra
EX755590       <-- TGGCAGCCGTCATGCTCCCTCCTCCAACGCTGTGGCTCACTAGAATGACC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544289       <-- TGGCAGCCGTCATGCTCCCTCCTCCAACGCTGTGGCTCACTAGAATGACC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD557582       <-- TGGCAGCCGTCATGCTCCCTCCTCCAACGCTGTGGTTCACCAGGATGACC  Raphanus raphanistrum subsp. landra
EY922352       <-- TGGCAGCCGTCATGCTCCCTCCTCCAACGCTGTGGCTCACCAGGATGACC  Raphanus raphanistrum subsp. landra
EY915035       <-- TGGCAGCCGTCATGGTCCCTCCTCCAACGCTGTGGCTCACCAGAATGACC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD542936       <-- TGGCAGCCGTCATGCTCCCTCCTCCAACGCTGTGGCTCACTAGAATGACC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907045       <-- TGGCAGCCGTCATGCTCCCTCCTCCAACGCTGTGGCTCACTAGAATGACC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907749       <-- TGGCAGCCGTCATGCTCCCTCCTCCAACGCTGTGGCTCACTAGAATG-CC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY914856       <-- ........................CAACGCTGTGGCTCACCAGAATGAC-  Raphanus raphanistrum subsp. raphanistrum (NY)
EY903612       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY910813       --> TGGCAGCCGTCATGGTCCCTCCTCCAACGCTGTGGCTCACCAGAATGACC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV574365       --> TGGCAGCCGTCATGCTCCCTCCTCCAACGCTGTGGCTCACCAGGATGACC  Raphanus raphanistrum subsp. landra
EX759638       --> TGGCAGCCGTCATGCTCCCTCCTCCAACGCTGTGGCTCACTAGAATGACC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY918327       --> ..................................................  Raphanus raphanistrum subsp. landra
EY910961       --> TGGCAGCCGTCATGGTCCCTCCTCCAACGCTGTGGCTCACCAGAATGACC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD539934       --> TGGCAGCCGTCATGCTCCCTCCTCCAACGCTGTGGCTC............  Raphanus raphanistrum subsp. raphanistrum (MS)
FD553660       --> ..................................................  Raphanus raphanistrum subsp. landra

               701    -    751
UN16803        --> TTTTGGTCGAGGGGAAGTTGGGAGAGGAAGTCATTGAGAGGCTGGTTGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY924843       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY924236       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV569946       <-- TTTTGGTCGAGGGGAAGTTTGGAGAGGAAGTCACTGAGAGGCTGGTTGTA  Raphanus raphanistrum subsp. landra
EX755590       <-- TTTTGGTCGAGGGGAAGTTGGGATAGGAAGTCATTGAGAGGCTGGTTGTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544289       <-- TTTTGGTCGAGGGGAAGTTGGGATAGGAAGTCATTGAGAGGCTGGTTGTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD557582       <-- TTTTGGTCGAGGGGAAGTTTGGAGAGGAAGTCACTGAGAGGCTGGTTGTA  Raphanus raphanistrum subsp. landra
EY922352       <-- TTTTGGTCGAGGGGAAGTTTGGAGAGGAAGTCACTGAGAGGCTGGTTGTA  Raphanus raphanistrum subsp. landra
EY915035       <-- TTTTGGTCGAGGGGAAGTTGGGAGAGGAAGTCATAGAGAGGCTGGTTGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD542936       <-- TTTTGGTCGAGGGGAAGTTGGGATAGGAAGTCATTGAGAGGCTGGTTGTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907045       <-- TTTTGGTCGAGGGGAAGTTGGGATAGGAAGTCATTGAGAGGCTGGTTGTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907749       <-- TTTTGGTCGAGGGGAAGTTGGGATAGGAAGTCATTGAGAGGCTGGTTGTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY914856       <-- TTTTGGTCGAGGGGAAGTTGGGAGAGGAAGTCATAGAGAGGCTGGTTGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY903612       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY910813       --> TTTTGGTCGAGGGGAAGTTGGGAGAGGAAGTCATAGAGAGGCTGG.....  Raphanus raphanistrum subsp. raphanistrum (NY)
EV574365       --> TTTTGGTCGAGGGGAAGTTTGGAGAGGAAGTCACTGAGAGGCTGGTTGTA  Raphanus raphanistrum subsp. landra
EX759638       --> TTTTGGTCGAGGGGAAGTTGGGATAGGAAGTCATTGAGAGGCTGGTTGTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY918327       --> ..................................................  Raphanus raphanistrum subsp. landra
EY910961       --> TTTTGGTCGAGGGGAAGTTGGGAGAGGAAGTCATAGAGAGGCTGGTTGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD539934       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD553660       --> ..................................................  Raphanus raphanistrum subsp. landra

               751    -    801
UN16803        --> GTCATCAAGAGAGGACACAGTGTTTGGATCAGTTATGTTGATCCCAGCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY924843       <-- ..................................................
EY924236       <-- ..................................................
EV569946       <-- GTCATCAAGAGAGGACACAGTGTTTGGATCAGTTATGTTGATCCCAGCAC
EX755590       <-- GTCATCAAGAGGGGACACAGTGTTTGGATCAGTTATGTTGATCCCAGCAC
FD544289       <-- GTCATCAAGAGAGGACACAGTGTTTGGATCAGTTATGTTGATCCCAGCAC
FD557582       <-- GTCATCAAGAGAGGACACAGTGTTTGGATCAGTTATGTTGATCCCAGCAC
EY922352       <-- GTCATCAAGAGAGGACACAGTGTTTGGATCAGTTATGTTGATCCCAGCAC
EY915035       <-- GTCATCAAGAGAGGACACAGTGTTTGGATCAGTTATGTTGATCCCAGCAC
FD542936       <-- GTCATCAAGAGAGGACACAGTGTTTGGATCAGTTATGTTGATCCCAGCAC
EY907045       <-- GTCATCAAGAGAGGACACAGTGTTTGGATCAGTTATGTTGATCCCAGCAC
EY907749       <-- GTCATCAAGAGAGGACACAGTGTTTGGATCAGTTATGTTGATCCCAGCAC
EY914856       <-- GTCATCAAGAGAGGACACAGTGTTTGGATCAGTTATGTTGATCCCAGCAC
EY903612       --> ..................................................
EY910813       --> ..................................................
EV574365       --> GTCATCAAGAGAGGACACAGTGTTTGGATCAGTTATGTTGATCCCAGCAC
EX759638       --> GTCATCAAGAGGGGACACAGTGTTTGGATCAGTTATGTTGATCCCAGCAC
EY918327       --> ..................................................
EY910961       --> GTCATCAAGAGAGGACACAGTGTTTGGATCAGTTATGTTGA.........
FD539934       --> ..................................................
FD553660       --> ..................................................

               801    -    851
UN16803        --> CCTTGAGGTCGATGCAAGTGGCCTTATGACCATTCTTCCTCAGTGAATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY924843       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY924236       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV569946       <-- CCTTGAGGTCGATGCAAGTGGCCTTGTGACCATTCTTCCTCAGTGAATTG  Raphanus raphanistrum subsp. landra
EX755590       <-- CCTTGAGGTCGATGCAAGTGGCCTTATGACCATTCTTCCTCAGTGAATTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544289       <-- CCTTGAGGTCGATGCAAGTGGCCTTATGACCATTCTTCCTCAGTGAATTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD557582       <-- CCTTGAGGTCGATGCAAGTGGCCTTGTGACCATTCTTCCTCAGTGAATTG  Raphanus raphanistrum subsp. landra
EY922352       <-- CCTTGAGGTCGATGCAAGTGGCCTTGTGACCATTCTTCCTCAGTGAATTG  Raphanus raphanistrum subsp. landra
EY915035       <-- CCTTGAGGTCGATGCAAGTGGCCTTATGACCATTCTTCCTCAGTGAATTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD542936       <-- CCTTGAGGTCGATGCAAGTGGCCTTATGACCATTCTTCCTCAGTGAATTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907045       <-- CCTTGAGGTCGATGCAAGTGGCCTTATGACCATTCTTCCTCAGTGAATTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907749       <-- CCTTGAGGTCGATGCAAGTGGCCTTATGACCATTCTTCCTCAGTGAATTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY914856       <-- CCTTGAGGTCGATGCAAGTGGCCTTATGACCATTCTTCCTCAGTGAATTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY903612       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY910813       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV574365       --> CCTTGAGGTCGATGCAAGTGGCCTTGTGACCATTCTTCCTCAGTGAATTG  Raphanus raphanistrum subsp. landra
EX759638       --> CCTTGAG-TCGAT.....................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY918327       --> ..................................................  Raphanus raphanistrum subsp. landra
EY910961       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD539934       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD553660       --> ..................................................  Raphanus raphanistrum subsp. landra

               851    -    901
UN16803        --> GCGAGCTTGTACCAACACCATCCTCCATGCCCTGCACCGTGCACAAACAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY924843       <-- ..................................................
EY924236       <-- ..................................................
EV569946       <-- GCGAGCTTGTACCAACACCATCCTCCATGCCCTGCACCGTGCACAAACAC
EX755590       <-- GCGAGCTTGTACCAACACCATCCTCCATGCCCTGCACCGTGCACAAACAC
FD544289       <-- GCGAGCTTGTACCAACACCATCCTCCATGCCCTGCACCGTGCACAAACAC
FD557582       <-- GCGAGCTTGTACCAACACCATCCTCCATGCCCTGCACCGTGCACAAACAC
EY922352       <-- GCGAGCTTGTACCAACACCATCCTCCATGCCCTGCACCGTGCACAAACAC
EY915035       <-- GCGAGCTTGTACCAGCACCATCCTCCATGCCCTGCACCGTGCACAAACAC
FD542936       <-- GCGAGCTTGTACCAACACCATCCTCCATGCCCTGCACCGTGCACAAACAC
EY907045       <-- GCGAGCTTGTACCAACACCATCCTCCATGCCCTGCACCGTGCACAAACAC
EY907749       <-- GCGAGCTTGTACCAACACCATCCTCCATGCCCTGCACCGTGCACAAACAC
EY914856       <-- GCGAGCTTGTACCAGCACCATCCTCCATGCCCTGCACCGTGCACAAACAC
EY903612       --> ..................................................
EY910813       --> ..................................................
EV574365       --> GCGAGCTTGTACCAACACCATCCTCCATGCCCTGCACCGTGCACAAACAC
EX759638       --> ..................................................
EY918327       --> ..................................................
EY910961       --> ..................................................
FD539934       --> ..................................................
FD553660       --> ..................................................

               901    -    951
UN16803        --> AAAATGATGTTCACTCATCTTCAAAATCTTTTTCTAATACAATTAGTATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY924843       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY924236       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV569946       <-- AAAATGATGGTCACTCATCTTCAAAATCTTTTTCTAATcc..........  Raphanus raphanistrum subsp. landra
EX755590       <-- AAAATGATGTTCACTCATCTTCAAAATCTTTTTCTAATACcc........  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544289       <-- AAAATGATGTTCACTCATCTTCAAAATCTTTTTCTAATcc..........  Raphanus raphanistrum subsp. raphanistrum (MS)
FD557582       <-- AAAATGATGGTCACTCATCTTCAAAATCTTTTTCTAATcc..........  Raphanus raphanistrum subsp. landra
EY922352       <-- AAAATGATGGTCACTCATCTTCAAAATCTTTTTCTAATACcc........  Raphanus raphanistrum subsp. landra
EY915035       <-- AAAATGATGTTCACTCATCTTCAAA-TCTTTTTCTAATACAATTAGTATT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD542936       <-- AAAATGATGTTCACTCATCTTCAAAATCTTTTTCTAATACAATTACTATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907045       <-- AAAATGATGTTCACTCATCTTCAAAATCTTTTTCTAATcc..........  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907749       <-- AAAATGATGTTCACTCATCTTCAAAATCTTTTTCTAATACAATTA-TATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY914856       <-- AAAATGATGTTCACTCATCTTCAAA-TCTTTTTCTAATACAATTcc....  Raphanus raphanistrum subsp. raphanistrum (NY)
EY903612       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY910813       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV574365       --> AAAATGATGGTCACTCATCTTCAAAATCTTTTTCTAATcc..........  Raphanus raphanistrum subsp. landra
EX759638       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY918327       --> ..................................................  Raphanus raphanistrum subsp. landra
EY910961       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD539934       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD553660       --> ..................................................  Raphanus raphanistrum subsp. landra

               951    -   1001
UN16803        --> TCTTCCTAGTAGTCC
                   ~~~~~~~~~~~~~~~
EY924843       <-- ...............
EY924236       <-- ...............
EV569946       <-- ...............
EX755590       <-- ...............
FD544289       <-- ...............
FD557582       <-- ...............
EY922352       <-- ...............
EY915035       <-- TCTTCCTAGTAGTCC
FD542936       <-- TCTTCCTAc......
EY907045       <-- ...............
EY907749       <-- TCTTCCTAGTAGTC.
EY914856       <-- ...............
EY903612       --> ...............
EY910813       --> ...............
EV574365       --> ...............
EX759638       --> ...............
EY918327       --> ...............
EY910961       --> ...............
FD539934       --> ...............
FD553660       --> ...............