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Alignment for radish unigene UN16842

               1      -     51
UN16842        --> GGGAACGTTTCCTTACCAAGGAATCTGGTTCAGTGGATCATACGGAGCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767746       <-- ..................................................
EX768978       <-- ..................................................
EX892626       <-- ..................................................
EV547414       <-- ..................................................
EX766321       <-- ..................................................
EY904451       <-- ..................................................
FD937261       <-- ..................................................
EX765186       --> GGGAACGTTTCCTTACCAAGGAATCTGGTTCAGTGGATCATACGGAGCCA
EY908818       --> ..................................................
FD941672       --> ..................................................

               51     -    101
UN16842        --> TGACGAGCGTTCCCGCCAACATCGAGTACATGCTCAAAACCAACTTCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767746       <-- ..................................................
EX768978       <-- ..................................................
EX892626       <-- ..................................................
EV547414       <-- ..................................................
EX766321       <-- ..................................................
EY904451       <-- ..................................................
FD937261       <-- ..................................................
EX765186       --> TGACGAGCGTTCCCGCCAACATCGAGTACATGCTCAAAACCAACTTCAAG
EY908818       --> ..................................................
FD941672       --> ..................................................

               101    -    151
UN16842        --> AACTTTCCCAAAGGAGAGTTTTACAAGGAGAGGTTCCGAGATTTGCTCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767746       <-- ..................................................
EX768978       <-- ..................................................
EX892626       <-- ..................................................
EV547414       <-- ..................................................
EX766321       <-- ..................................................
EY904451       <-- ..................................................
FD937261       <-- ..................................................
EX765186       --> AACTTTCCCAAAGGAGAGTTTTACAAGGAGAGGTTCCGAGATTTGCTCGA
EY908818       --> ..................................................
FD941672       --> ..................................................

               151    -    201
UN16842        --> AGAAGGTATCTTCAACGCTGATGACGAGTCTTGGAAAGAGCAGAGACGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767746       <-- ..................................................
EX768978       <-- ..................................................
EX892626       <-- ..................................................
EV547414       <-- ..................................................
EX766321       <-- ..................................................
EY904451       <-- ..................................................
FD937261       <-- ..................................................
EX765186       --> AGAAGGTATCTTCAACGCTGATGACGAGTCTTGGAAAGAGCAGAGACGGA
EY908818       --> ..................................................
FD941672       --> ..................................................

               201    -    251
UN16842        --> TCATCATAACCGAGATGCATTCTACGAGATTCGTGGACCATTCGTTCCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767746       <-- ..................................................
EX768978       <-- ..................................................
EX892626       <-- ..................................................
EV547414       <-- ..................................................
EX766321       <-- ..................................................
EY904451       <-- ..................................................
FD937261       <-- ..................................................
EX765186       --> TCATCATAACCGAGATGCACTCTACGAGATTCGTGGACCATTCGTTCCAC
EY908818       --> ....CATAACCGAGATGCATTCGACGAGATTCGTCGACCATTCGTTCCAC
FD941672       --> ..................................................

               251    -    301
UN16842        --> ACCACGAGGGAGTTGATACATAGGAAGCTCTTGAAAGTGATGGAGAGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767746       <-- ..................................................
EX768978       <-- ..................................................
EX892626       <-- ..................................................
EV547414       <-- ..................................................
EX766321       <-- ..................................................
EY904451       <-- ..................................................
FD937261       <-- ..................................................
EX765186       --> ACCACGAGGGAGTTGATACATAGGAAGCTCTTGAAAGTGATGGAGAGTTT
EY908818       --> ACCACGAGGGAGTTGATACATAGGAAGCTCTTGAAAGTGATGGAGAGTTT
FD941672       --> ..................................................

               301    -    351
UN16842        --> TTCAAAGTCACAAGAAGCTTTTGATCTTCAAGAGGTTCTTTTGAGGTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767746       <-- ..................................................
EX768978       <-- ..................................................
EX892626       <-- ..................................................
EV547414       <-- ..................................................
EX766321       <-- ..................................................
EY904451       <-- ..................................................
FD937261       <-- ..................................................
EX765186       --> TTCAAAGTCACAAGAAGCTTTTGATCTTCAAGAGGTTCTTTTGAGGTTGA
EY908818       --> CTCAAAGTCACAAGAAGCTTTTGATCTTCAAGAGGTTCTTTTGAGGTTGA
FD941672       --> ..................................................

               351    -    401
UN16842        --> CGTTTGATAATATCTGCATCGCGGGTCTCGGCGATGATCCTGGTACTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767746       <-- ..................................................
EX768978       <-- ..................................................
EX892626       <-- ..................................................
EV547414       <-- ..................................................
EX766321       <-- ..................................................
EY904451       <-- ..................................................
FD937261       <-- ..................................................
EX765186       --> CGTTTGATAATATCTGCATCGCGGGTCTCGGCGATGATCCTGGTACTTTG
EY908818       --> CGTTTGATAATATCTGCATCGCGGGTCTCGGCGATGATCCTGGCACTTTG
FD941672       --> ..................................................

               401    -    451
UN16842        --> GACGTTGATCTTCCTCAAGTTCCGTTCGCTAAGGCCTTTGAAGAAGCTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767746       <-- ..................................................
EX768978       <-- ..................................................
EX892626       <-- ..................................................
EV547414       <-- ..................................................
EX766321       <-- ..................................................
EY904451       <-- ..................................................
FD937261       <-- ..................................................
EX765186       --> GACGTTGATCTTCCTCAAGTTCCGTTCGCTAAGGCCTTTGAAGAAGCTAC
EY908818       --> GACGTTGATCTTCCTCAAGTTCCATTCGCTAAGGCCTTTGAAGAAGCTAC
FD941672       --> ..................................................

               451    -    501
UN16842        --> GGAGAGTACTATGTTTAGGTTCATGATTCCACCGTTTTTGTGGAAACCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767746       <-- ..................................................
EX768978       <-- ..................................................
EX892626       <-- ..................................................
EV547414       <-- ..................................................
EX766321       <-- ..................................................
EY904451       <-- ..................................................
FD937261       <-- ..................................................
EX765186       --> GGAGAGTACTATGTTTAGGTTCATGATTCCACCGTTTTTGTGGAAACCTA
EY908818       --> GGAGAGTACTATGTTTAGGTTCATGATTCCACCGTTTTTGTGGAAACCTA
FD941672       --> ..................................................

               501    -    551
UN16842        --> TGAAGTTTTTTGACTTAGGGTACGAGAAAGGGCTGAGGAAAGCTGTTGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767746       <-- ..................................................
EX768978       <-- ..................................................
EX892626       <-- ..................................................
EV547414       <-- ..................................................
EX766321       <-- ..................................................
EY904451       <-- ..................................................
FD937261       <-- ..................................................
EX765186       --> TGAAGTTTTTTGACTTAGGGTACGAGAAAGGGCTGAGGAAAGCTGTTGAG
EY908818       --> TGAAGTTTTTTGACTTAGGGTACGAGAAAGGGCTGAGGAAAGCTGTTGAG
FD941672       --> ..................................................

               551    -    601
UN16842        --> ACGGTTCATGGGTTTATAGACGACGATGGTTGTGGACAGAATCAAGATGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767746       <-- ..................................................
EX768978       <-- ..................................................
EX892626       <-- ..................................................
EV547414       <-- ..................................................
EX766321       <-- ..................................................
EY904451       <-- ..................................................
FD937261       <-- ..................................................
EX765186       --> ACGGTTCATGGGTTTATAGAC-ACGATGGTTGTCGACAGAATCAAGATGC
EY908818       --> ACGGTTCATGGGTTTATAGACGA-GATGGTTGTGGACAGAATCAAGATGC
FD941672       --> ..................................................

               601    -    651
UN16842        --> TTAAAGAAGAAGGAACGTTAGAGAGAAACAAATCAGATGTCCTCTCGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767746       <-- ..................................................
EX768978       <-- ..................................................
EX892626       <-- ..................................................
EV547414       <-- ..................................................
EX766321       <-- ..................................................
EY904451       <-- ..................................................
FD937261       <-- ..................................................
EX765186       --> TTAAAGAAGAAG-AACGTTAGAGAGAAACAAATCAGATGTCCTCTCGAGG
EY908818       --> TTAAAGAAGAAGGAACGTTAGAGAGAAACAAATCAGATGTCCTCTCGAGG
FD941672       --> ............................gAAATCAGATGTCCTCTCGAGG

               651    -    701
UN16842        --> CTAATCCTTATAGAAAGTCACAAAAGAGGCAATGAGAATGATCGGTTCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767746       <-- ..........TAGAAAGTCACAAAAGAGGCAATGAGAATGATCGGTTCAC
EX768978       <-- ..................................................
EX892626       <-- ..................................................
EV547414       <-- ..................................................
EX766321       <-- ..................................................
EY904451       <-- ..................................................
FD937261       <-- ..................................................
EX765186       --> CTAATCCTTATAGAAAGTCATAAAAGAGcaat..................
EY908818       --> CTAATCCTTATAGAAAGTCACAAAAGAGGCAATGAGAATGATCGGTTCAC
FD941672       --> CTAATCCTTATAGAAAGTCACAAAAGAGGCAATCAGAATGATCGGTTCAC

               701    -    751
UN16842        --> CCTCAAGTTTTTCAGACAGTTCTGCACAAGTTTCATCTTAGCGGGACGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767746       <-- CCTCAAGTTTTTCAGACAGTTCTGCACAAGTTTCATCTTAGCGGGACGTG
EX768978       <-- ............CAGACAGTTCTGCACAAGTTTCATCTTAGCGGGACGTG
EX892626       <-- ........................CACAAGTTTCATCTTAGCGGGACGTG
EV547414       <-- ....................................CTTAGCGGGACGTG
EX766321       <-- ..................................................
EY904451       <-- ..................................................
FD937261       <-- ..................................................
EX765186       --> ..................................................
EY908818       --> CCTCAAGTTTTTCAGACAGTTCTGCACAAGTTTCATCTTAGCGGGACGTG
FD941672       --> CCTCAAGTTTTTCAGACAGTTCTGCACACGTTTCATCTTAGCGGGACGTG

               751    -    801
UN16842        --> ACACGAGTTCTGTCGGGCTTTCTTGGTTCTTCTGGTTGATAACGAAACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767746       <-- ACACGAGTTCTGTCGGGCTTTCTTGGTTCTTCTGGTTGATAACGAAACAT
EX768978       <-- ACACGAGTTCTGTCGGGCTTAGTTGGTTCTTCTGGTTGATAACGAAACAT
EX892626       <-- ACACGAGTTCTGTCGGGCTTTCTTGGTTCTTCTGGTTGATAACGAAACAT
EV547414       <-- ACACGAGTTCTGTCGGGCTTTCTTGGTTCTTCTGGTTGATAACGAAACAT
EX766321       <-- ..................................................
EY904451       <-- ..................................................
FD937261       <-- ..................................................
EX765186       --> ..................................................
EY908818       --> ACACGAGTTCTGTCGGGCTTTCTTGGTTCTTCTGGTTGATAACGAAACAT
FD941672       --> ACACGAGTTCTGTCGGGCTTAGTTGGTTCTTCCGGTTGATAACGAAACAT

               801    -    851
UN16842        --> CCTGAAGTTGAAAACAAGATCCTCCAAGAAATAACAGAAATCTTGAGCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767746       <-- CCTGAAGTAGAAAACAAGATCCTCCAAGAAATAACAGAGATCGTGAGCCA
EX768978       <-- CCTGAAGTCGAAAACAAGATCCTCCAAGAAATAACAGAAATCTTGAGCCG
EX892626       <-- CCTGAAGTGGAAAACAAGATCCTCCAAGAAATAACAGAAATCTTGAGCCG
EV547414       <-- CCTGAAGTAGAAAACAAGATCCTCCAAGAAATAACAGAGATCGTGAGCCA
EX766321       <-- CCTGAAGTCGAAAACAAGATCCTCCAAGAAATAACAGAAATCTTGAGCCG
EY904451       <-- ......GTTGAAAACAAGATCCTCCAAGAAATAACAGAAATCTTGAGCCG
FD937261       <-- ..................................................
EX765186       --> ..................................................
EY908818       --> CCTGAAGTTGAAAACAAGATCCTCCAAGAAATAACAGAAATCTTGAGCCG
FD941672       --> CCTGAAGTGGAAAAAAAGATCCTCCAAGAAATAACAGAAATCTTGAGCCG

               851    -    901
UN16842        --> AAGAGACAATAATCTTGATGAGAGTTGTTGTCACTTCACAGTCAAGGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767746       <-- AAGAGACAATAATCTTTATGAGAGTTGTTGTCACTTCACAGTCAAGGAGC
EX768978       <-- GAGAGACAATAATCTTGATGAGAGTTGTTGTCACTTCACAGTCAAGGAGC
EX892626       <-- AAGAGACAATAATCTTGATGAGAGTTGTTGTCACTTCACAGTCAAGGAGC
EV547414       <-- AAGAGACAATAATCTTTATGAGAGTTGTTGTCACTTCACAGTCAAGGAGC
EX766321       <-- GAGAGACAATAATCTTGATGAGAGTTGTTGTCACTTCACAGTCAAGGAGC
EY904451       <-- AAGAGACAATAATCTTGATGAGAGTTGTTGTCACTTCACAGTCAAGGAGC
FD937261       <-- ..................................................
EX765186       --> ..................................................
EY908818       --> AAGAGACAATAATCTTGATGAGAGTTGTTGTCACTTCACAGTCAAG-AGC
FD941672       --> AAGAGACAATAATCTTGATGAGAGTTGTTGTCACTTCACAGTCAAGGAGC

               901    -    951
UN16842        --> TAAACGACATGGTGTATCTACAAGCGGCCTTGTCTGAAACTCTTAGACTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767746       <-- TAAACGACATGGTGTATTTACAAGCGGCCTTGTTTGAATTTTTTAGACTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX768978       <-- TAAGCGACATGGTGTATCTACAAGCGGCCTTGTCTGAAACTCTTAGACTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX892626       <-- TAAACGACATGGTGTACCTACAAGCGGCCTTGTCTGAAACTCTTAGACTC  Raphanus sativus var. oleiformis
EV547414       <-- TAAACGACATGGTGTATCTACAAGCGGCCTTGTCTGAAACTCTTAGACTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX766321       <-- TAAGCGACATGGTGTATCTACAAGCGGCCTTGTCTGAAACTCTTAGACTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY904451       <-- TAAACGACATGGTGTACCTACAAGCGGCCTTGTCTGAAACTCTTAGACTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD937261       <-- ..................................................  Raphanus sativus var. oleiformis
EX765186       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY908818       --> TAAACGACATGGTGTACCTACAAGCGGCCTTGTCTGAA-CTCTTAGACTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD941672       --> TAAACGACATGGTGTATCTACAAGCGGCCTTGTCTGAAACTCTTAGACTC  Raphanus sativus var. oleiformis

               951    -   1001
UN16842        --> TATCCACCAATACCAATGGAGATGAAACAAGCAACGGAAGAAGACGTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767746       <-- TATCCACCAATACCAATGGAGATGAAACAAGCAACGGAAGAAGACGTGTT
EX768978       <-- TATCCACCAATACCAATGGAGATGAAACAAGCAACGGAAGAAGACGTGTT
EX892626       <-- TATCCACCAATACCAATGGAGATGAAACAAGCGACGGAAGAAGACGTGTT
EV547414       <-- TATCCACCAATACCAATGGAGATGAAACAAGCAACGGAAGAAGACGTGTT
EX766321       <-- TATCCACCAATACCAATGGAGATGAAACAAGCAACGGAAGAAGACGTGTT
EY904451       <-- TATCCACCAATACCAATGGAGATGAAACAAGCAACAGAAGAAGACGTGTT
FD937261       <-- ..................................................
EX765186       --> ..................................................
EY908818       --> ..................................................
FD941672       --> TATCCACCAATACCAATGGAGATGAAACAAGCAACGGAAGAAGACGTGTT

               1001   -   1051
UN16842        --> TCCAGATGGGACTCTCTTGGAGAAAGGTTCGAGGGTTTACTTCTCTATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767746       <-- TCCAGATGGGACTCTCTTGGAGAAAGGTTTTAGGGTTTACTTCTCTATTT
EX768978       <-- TCCAGATGGGACTCTCTTGGAGAAAGGTTCAAGGGTTTACTTCTCTATCT
EX892626       <-- TCCAGATGGGACTCTCTTGGAGAAAGGTTCGAGGGTTTACTTCTCTATCT
EV547414       <-- TCCAGATGGGACTCTCTTGGAGAAAGGTTCTAGGGTTTACTTCTCTATCT
EX766321       <-- TCCGGATGGGACTCTCTTGGAGAAAGGTTCAAGGGTTTACTTCTCTATCT
EY904451       <-- TCCAGATGGGACTCTCTTGGAGAAAGGTTCGAGGGTTTACTTCTCTATCT
FD937261       <-- ................................................tT
EX765186       --> ..................................................
EY908818       --> ..................................................
FD941672       --> TCCGGATGGGACTCTCTTGGAGAAAGGTTCGAGGGTTTACTTCTCTATCT

               1051   -   1101
UN16842        --> ATGCCATGGGAAGGATGAAATCAATATGGGGTGAAGACTGTGAAACGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767746       <-- ATGCCATGGGAAGGATGAAATCAATATGGGGTGAAGACTGTGAAACGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX768978       <-- ATGCCATGGGAAGGATGAAATCAATATGGGGTGAAGACTGTGAAATGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX892626       <-- ACGCCATGGGAAGGATGAAATCGATATGGGGTGAAGACTGTGAAACGTTT  Raphanus sativus var. oleiformis
EV547414       <-- ATGCCATGGGAAGGATGAAATCAATATGGGGTGAAGACTGTGAAACGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX766321       <-- ATGCCATGGGAAGGATGAAATCAATATGGGGTGAAGACTGTGAAATGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY904451       <-- ATGCCATGGGAAGGATGAAATCAATATGGGGTGAAGACTGTGAAATGTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD937261       <-- ATGCCGTGGGAAGGATGAAATCGATATAGGGTGAAGACTGTGAAACGTTT  Raphanus sativus var. oleiformis
EX765186       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY908818       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD941672       --> ATGCCGTGGGAAGGATGAAATCGATATAGGGTGAAGACTGTGAAACGTTT  Raphanus sativus var. oleiformis

               1101   -   1151
UN16842        --> AGACCAGAGAGATGGATACAAGGAGGACAGTACGTGAGTGATGATCAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767746       <-- AGACTGGAGAGATGGATACAAGGAGGACAGTACGTGAGTGATGATCAGTT
EX768978       <-- AGACCAGAAAGATGGATACAAGGAGGACAGTACGTGAGTGATGATCAGTT
EX892626       <-- AGACCAGAGAGATAGATACAAGGAGGACAGTACGTGAGTGATGATCAGTT
EV547414       <-- AGACCGGAGAGATGGATACAAGGAGGACAGTACGTGAGTGATGATCAGTT
EX766321       <-- AGACCAGAAAGATGGATACAAGGAGGACAGTACGTGAGTGATGATCAGTT
EY904451       <-- AGACCAGAAAGATGGATACAAGGAGGACAGTACGTGAGTGATGATCAGTT
FD937261       <-- AGACCAGAGAGATGGATACAAGGAGGACAGTACGTGAGTGATGATCAGTT
EX765186       --> ..................................................
EY908818       --> ..................................................
FD941672       --> AGACCAGAGAGATGGATACAAGGAGGACAGTACGTGAGTGATGATCAGTT

               1151   -   1201
UN16842        --> TAAATACGTTGTGTTCAATGGCGGTCCAAGGCTTTGTCTAGGGAAAACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767746       <-- TAAATATGTTGTGTTCAATGGCGGTCCAAGGCTTTGTTTAGGGAAAACAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX768978       <-- TAAATACGTTGTGTTCAATGGCGGTCCAAGGCTTTGTCTAGGGAAAACAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX892626       <-- TAAATACGTTGTGTTCAATGGCGGTCCAAGGCTTTGCCTTGGGAAAACAT  Raphanus sativus var. oleiformis
EV547414       <-- TAAATATGTTGTGTTCAATGGCGGTCCAAGGCTTTGTCTAGGGAAAACAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX766321       <-- TAAATACGTTGTGTTCAATGGCGGTCCAAGACTTTGTCTAGGGAAAACAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY904451       <-- TAAATACGTTGTGTTCAATGGCGGTCCAAGGCTTTGTCTAGGGAAAACAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD937261       <-- TAAATACGTTGTGTTCAATGGCGGTCCAAGGCTTTGTCTTGGGAAAACAT  Raphanus sativus var. oleiformis
EX765186       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY908818       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD941672       --> TAAATACGTTGTGTTCAATGGCGGTCCAAGGCTTTGTCTTGGGAAAACAT  Raphanus sativus var. oleiformis

               1201   -   1251
UN16842        --> TTGCTTACTTGCAGATGAAAATGGTGGCTGCTTCCATCTTGTTGAACTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767746       <-- TTGCTTACTTGCAGATGAAAATGGTGGCTGCTTCCATCTTGTTGAACTAC
EX768978       <-- TTGCTTACTTGCAGATGAAAATGGTGGCTGCTTCCATCTTGTTGAACTAC
EX892626       <-- TTGCTTACTTGCAGATGAAAATGGTGTCTGCTTCCATCTTGTTGAACTAC
EV547414       <-- TTGCTTACTTGCAGATGAAAATGGTGGCTGCTTCCGTCTTGTTGAACTAC
EX766321       <-- TTGCTTACTTGCAGATGAAAATGGTGGCTGCTT---CCTTGTTGAACTAC
EY904451       <-- TTGCTTACTTGCAGATGAAAATGGTGGCTGCTTCCATCTTGTTGAACTAC
FD937261       <-- TTGCTTACTTGCAGATGAAAATGGTGGCTGCTTCCATCTTGTTGAACTAC
EX765186       --> ..................................................
EY908818       --> ..................................................
FD941672       --> TTGCTTACTTGCAGATGAAAATGGTGGCTGCTTCCATCTTGTTGAACTAC

               1251   -   1301
UN16842        --> TCAATCAAGGTTGATCAAGATCATGTTGTTGTGCCTCGAGTTACAACTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767746       <-- TCAATCAAGGTTGATCAAGATCATGTTGTTGTGCCTCGAGTTACAACTAC
EX768978       <-- TCAATCAAGGTTGATCAAGATCATGTTGTTGTGCCTCGAGTTACAACTAC
EX892626       <-- TCAATCAAGGTTGATCAAGATCATGTTGTTGTGCCTCGAGTTACAACTAC
EV547414       <-- TCAATCAAGGTTGATCAAGATCATGTTGTTGTGCCTCGAGTTACAACTAC
EX766321       <-- TCAATCAAGGTTGATCAAGATCATGTTGTTGTGCCTCGAGTTACAACTAC
EY904451       <-- TCAATCAAGGTTGATCAAGATCATGTTGTTGTGCCTCGAGTTACAACTAC
FD937261       <-- TCAATCAAGGTTGATCAAGATCATGTTGTTGTGCCTCGAGTTACAACTAC
EX765186       --> ..................................................
EY908818       --> ..................................................
FD941672       --> TCAATCAAAGTTGATCAAGATCATGTTGTTGTGCCTCGAGTTACAACTAC

               1301   -   1351
UN16842        --> TTTGTACATGAAACATGGTCTTAAGGTCAGGATCATGAAGAGATCTTTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767746       <-- TTTGTACATGAAACATGGTCTTAAGGTCAGGATCATGAAGAGATCTTTAG
EX768978       <-- CTTGTACATGAAACATGGTCTTAAGGTCAGGATCACGAAGAGATCTTTAG
EX892626       <-- TTTGTACATGAAACATGGTCTTAAGGTCAGGATCATGAAGAGATCTTTAG
EV547414       <-- TTTGTACATGAAACATGGTCTTAAGGTCAGGATCATGAAGAGATCTTTAG
EX766321       <-- TTTGTACATGAAACATGGTCTTAAGGTCAGGATCACGAAGAGATCTTTAG
EY904451       <-- TTTGTACATGAAACATGGTCTTAAGGTCAGGATCACGAAGAGATCTTTAG
FD937261       <-- TTTGTACATGAAACATGGTCTTAAGGTCAGGATCATGAAGAGATCTTTAG
EX765186       --> ..................................................
EY908818       --> ..................................................
FD941672       --> TTTGTACATGAAcat...................................

               1351   -   1401
UN16842        --> AGGAGAGGAAGCAAGATTCATAAGTAAATAAGAAGAAATCAACTAAATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767746       <-- AGGAGTGGAAGCAAGATTCATAAGTAAATAATAAGAAATCAACTGAATGT
EX768978       <-- AGGAGAGGAAGCAAGATTCATAAGTAAATAAGAAGAAATCAACTAAATGT
EX892626       <-- AGGAGAGGAAGCAAGATTCATAAGTAAATAAGAAG...............
EV547414       <-- AGGAGTGGAAGCAAGATTCATAAGTAAATAATAAGAAATCAACTGAATGT
EX766321       <-- AGGAGAGGAAGCAAGATTCATAAGTAAATAAGAAGAAATCAACTAAATGT
EY904451       <-- AGGAGAGGAAGCAAGATTCATAAGTAAATAAGAAGAAATCAACTAAATGT
FD937261       <-- AGGAGAGGAAGCAAGATTCATAAGTAAATAAGAAGAAATCAACCAAACGT
EX765186       --> ..................................................
EY908818       --> ..................................................
FD941672       --> ..................................................

               1401   -   1451
UN16842        --> TACATGGAATTTGTTACTAAAATATTTGTTTATGTATGGTTAATGTAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767746       <-- T.................................................
EX768978       <-- TACATGGAATTTGTTACTAAAATATTTGTTTATGTACGGTTAATGTAAGA
EX892626       <-- ..................................................
EV547414       <-- TACATGGA-CTTGTTACTAAAATATTTGTTTATATATGGTTAATGTAA..
EX766321       <-- TACATGGAATTTGTTACTAAAATATTTGTTTATGTACGGTTAATGTAAGA
EY904451       <-- TACATGGAATTTGTTACTAAAATATTTGTTTATGTATGGTTAATGTAAGA
FD937261       <-- TACATGGAACTTGTTACTAAAATATTTGTTTATGTATGGTTAATGTAAGA
EX765186       --> ..................................................
EY908818       --> ..................................................
FD941672       --> ..................................................

               1451   -   1501
UN16842        --> TCTTCACCCTTTGTTCTATCTTAAAGTAGATTAGATACTTATATAATCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767746       <-- ..................................................
EX768978       <-- TCTTCACCC.........................................
EX892626       <-- ..................................................
EV547414       <-- ..................................................
EX766321       <-- TCTTCACCCTTTTTTCTATCTTAAAGTAGATTAGATACTTATATAATCTT
EY904451       <-- TCTTCACCCTTTGTTCTATCTTAAAGTAGATTAGATACTTATATAATCTT
FD937261       <-- TCTTCACCCTTTGT....................................
EX765186       --> ..................................................
EY908818       --> ..................................................
FD941672       --> ..................................................

               1501   -   1551
UN16842        --> TGTTAGTAAAATGTACAGTGTGTGTATTATTTGTAATGCAGATTAAATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX767746       <-- ..................................................
EX768978       <-- ..................................................
EX892626       <-- ..................................................
EV547414       <-- ..................................................
EX766321       <-- TGTTAGTAAAATGTACAGTGTGTGTATTATTTGTAATGCAGATTAAATGT
EY904451       <-- TGTTAGT...........................................
FD937261       <-- ..................................................
EX765186       --> ..................................................
EY908818       --> ..................................................
FD941672       --> ..................................................

               1551   -   1601
UN16842        --> TCTAC
                   ~~~~~
EX767746       <-- .....
EX768978       <-- .....
EX892626       <-- .....
EV547414       <-- .....
EX766321       <-- TCTAC
EY904451       <-- .....
FD937261       <-- .....
EX765186       --> .....
EY908818       --> .....
FD941672       --> .....