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Alignment for radish unigene UN16878

               1      -     51
UN16878        --> GGATTCGTATCTAAGAAAGAAACCATGGTTCTTACCTCCTCAAAGGACGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982524       <-- ..................................................
EY901633       <-- ..................................................
FD538210       <-- ..................................................
FD531114       <-- ..................................................
FD535460       --> GGATTCGTATCTAAGAAAGAAACCATGGTTCTTACCTCCTCAAAGGACGA
FD568817       --> GGATTCGTATCCAA-AAAGAAACCATGGTTCTTACCTCCTCAAAGGACGA
FD986243       --> GGATTCGTATCTAAGAAAGAAACCATGGTTCTTACCTCCTCAAAGGACGA
EY905131       --> ....ggaTATCTAAGAAAGAAACGATGGTTCTTACCTCCTCAAAGGACGA
EV525479       --> ..................................................
FD534887       --> ..................................................
FD945814       --> ..................................................

               51     -    101
UN16878        --> GATCGACGTGAGGGATTTCGTGTTAAACAAAAGGAATGGTGTTAAAGGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982524       <-- ..................................................
EY901633       <-- ..................................................
FD538210       <-- ..................................................
FD531114       <-- ..................................................
FD535460       --> GATCGACGTGAGGGATTTCGTGTTAAACAAAAGGAATGGTGTTAAAGGTC
FD568817       --> GATCGACGTGAGGGATTTCGTGTTAAACAAAAGGAATGGTGTTAAAGGTC
FD986243       --> GATCGACGTGAGGGATTTCGTGTTAAACAAAAGGAATGGTGTTAAAGGTC
EY905131       --> GATCGACGTGAGGGATTTCGTGTTAAACAAAAGGAATGGTGTTAAAGGTC
EV525479       --> ..................................................
FD534887       --> ..................................................
FD945814       --> ..................................................

               101    -    151
UN16878        --> TCGTCGACTTTATAACCCTAAACACACTTCCTTCTCCATATATTCAACCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982524       <-- ..................................................
EY901633       <-- ..................................................
FD538210       <-- ..................................................
FD531114       <-- ..................................................
FD535460       --> TCGTCGACTTTATAACCCTAAACACACTTCCTTCTCCATATATTCAACCT
FD568817       --> TCGTCGACTTTATAACCCTAAACACACTTCCTTCTCCATATATCCAACCT
FD986243       --> TCGTCGACTTTATAACCCTAAACACACTTCCTTCTCCATATATTCAACCT
EY905131       --> TCGTCGACTTTATAACCCTAAACACACTTCCTTCTCCATACATTCAACCT
EV525479       --> ..................................................
FD534887       --> ..................................................
FD945814       --> ..................................................

               151    -    201
UN16878        --> CCTCACGAACGCTTCACCTCCGACAAAATCATACCGTCACAAGTTCCTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982524       <-- ..................................................
EY901633       <-- ..................................................
FD538210       <-- ..................................................
FD531114       <-- ..................................................
FD535460       --> CCTCACGAACGCTTCACCTCCGACAAAATCATACCGTCACAAGTTCCTGT
FD568817       --> CCTCACGAACGCTTCACCTCCGACAAAATCATACCGTCACAAGTTCCTGT
FD986243       --> CCTCACGAACGCTTCACCTCCGACAAAATCATACCGCCACAAGTTCCTGT
EY905131       --> CCTCAAGAACGCTTCACATCCGAGAAAATTATATCGTCACAAGTTCCTGT
EV525479       --> ..................ggCGACAAAATCATACCGTCACAAGTTCCTGT
FD534887       --> ...................ggGACAAAATCATACCGTCACAAGTTCCTGT
FD945814       --> ...................ggGACAAAATCATACCGTCACAAGTTCCTGT

               201    -    251
UN16878        --> CATTGATGTGTCTGATTGGTTAGACCCACGAGTTGCTAGAGAGATCTGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982524       <-- ..................................................
EY901633       <-- ..................................................
FD538210       <-- ..................................................
FD531114       <-- ..................................................
FD535460       --> CATTGATGTGTCTGATTGGTTAGACCCACGATTTGCTAGAGAGATCTGCG
FD568817       --> CATTGATGTGTCTGATTGGCTAGACCCACGAGTTGCTAGAGAGATCTGCG
FD986243       --> CATTGATGTGTCTAATTGGTTAGACCCACGAGTTGCTAGAGAGATCTGCG
EY905131       --> CATTGATGTGTCTGATTGGTTAGACCCACGAGTTGCTAGAGAGATCTGCG
EV525479       --> CATTGATGTGTCTGATTGGTTAGACCCACGAGTTGCTAGAGAGATCTGCG
FD534887       --> CATTGATGTGTCTGATTGGTTAGACCCACGAGTTGCTAGAGAGATCTGCG
FD945814       --> CATTGATGTGTCTGATTGGCTAGACCCACGAGTTGCTAGAGAGATCTGCG

               251    -    301
UN16878        --> ACGCAGCGGCTAAGCTCGGGGTGTTTCAGATAGTGAACCACGGGATAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982524       <-- ..................................................
EY901633       <-- ..................................................
FD538210       <-- ..................................................
FD531114       <-- ..................................................
FD535460       --> ACGCAGCGGCTAAGCTCGGGGTGTTTCAGATAGTGAACCACGGGATAGCT
FD568817       --> ACGCAGCGGCTAAGCTCGGGGTGTTTCAGATAGTGAACCACGGGATAGCT
FD986243       --> ACGCAGCGGTTAAGCTCGGGGTGTTTCAGATAGTGAACCACGGGATAGCT
EY905131       --> ACGCAGCGGCTAAGCTCGGGGTGTTTCAGATAGTGAACCACGGGATAGCT
EV525479       --> ACGCAGCGGCTAAGCTCGGGGTGTTTCAGATAGTGAACCACGGGATAGCT
FD534887       --> ACGCAGCGGCTAAGCTCGGGGTGTTTCAGATAGTGAACCACGGGATAGCT
FD945814       --> ACGCAGCGGCTAAGCTCGGGGTGTTTCAGATAGTGAACCACGGGATAGCT

               301    -    351
UN16878        --> CCGGAGGAGTTAAAGGCAGTCATTGCGGCAGCTCGTGGTTTTTTCGACCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982524       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY901633       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538210       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531114       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD535460       --> CCGGAGGAGTTAAAGGCAGTCATTGCGGCAGCTCGTGGCTTTTTCGACCT  Raphanus raphanistrum subsp. maritimus
FD568817       --> CCGGAGGAGTTAAAGGCAGTCATTGCGGCAGCTCGTGGTTTTTTCGACCT  Raphanus sativus cv Early Scarlet Globe
FD986243       --> CCGGAGGAGTTAAAGGCAGTCATTGCGGCAGCTCGTGGTTTTTTCGACCT  Raphanus raphanistrum subsp. landra
EY905131       --> CCGAAGGAGTTAAAGGCAGTCATTGCGGCAGCTCGTGGTTTTTTCGACCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV525479       --> CCGGAGGAGTTAAAGGCAGTCATTGCGGCAGCTCGTGGCTTTTTCGACCT  Raphanus raphanistrum subsp. maritimus
FD534887       --> CCGGAGGAGTTAAAGGCAGTCATTGCGGCAGCTCGTGGCTTTTTCGACCT  Raphanus raphanistrum subsp. maritimus
FD945814       --> CCGGAGGAGTTAAAGGCAGTCATTGCGGCAGCTCGTGGTTTTTTCGACCT  Raphanus sativus cv Early Scarlet Globe

               351    -    401
UN16878        --> GCCGGCGGATGAGAGGAAGAGATATTGGAAAGGAAGTTCGGTGTCGGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982524       <-- ..................................................
EY901633       <-- ..................................................
FD538210       <-- ..................................................
FD531114       <-- ..................................................
FD535460       --> GCCGGCGGATGAGAGGAAGAGATATTGGAAAGGAAGTTCGGTGTCGGAGA
FD568817       --> GCCGGCGGATGAGAGGAAGAGATATTGGAAAGGAAGTTCGGTGTCGGAGA
FD986243       --> GCCGGCGGATGAGAGGAAGAGATATTGGAAAGGAAGTTCG-TGTCGGAGA
EY905131       --> GCCGGCGGATGAGAGGAAGAGATATTGGAAAGGAAGTTCGGTGTCGGAGA
EV525479       --> GCCGGCGGATGAGAGGAAGAGATATTGGAAAGGAAGTTCGGTGTCAGAGA
FD534887       --> GCCGGCGGATGAGAGGAAGAGATATTGGAAAGGAAGTTCGTTGTCGGAGA
FD945814       --> GCCGGCGGATGAGAGGAAGAGATATTGGAAAGGAAGTTCGGTGTCGGAGA

               401    -    451
UN16878        --> CGGCGTGGTTGACAACAAGTTTCACTCCGTATAAAGAAAGTGTGTTGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982524       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY901633       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538210       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531114       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD535460       --> CGGCGTGGCTGACAACAAGTTTCACTCCGTATAAAGAAAGTGTGTTGGAG  Raphanus raphanistrum subsp. maritimus
FD568817       --> CGGCGTGGTTGACAACAAGTTTCACTCCGTATAAAGAAAGTGTGTTGGAG  Raphanus sativus cv Early Scarlet Globe
FD986243       --> CGGCGTGGTTGACAACAAGTTTCACTCCGTATAAAGAAAGTGTGTTGGAG  Raphanus raphanistrum subsp. landra
EY905131       --> CGGCGTGGTTGACAACAAGTTTCACTCCGTATAAAGAAAGTGTGTTGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV525479       --> CGGCGTGGCTGACAACAAGTTTCACTCCGTATAAAGAAAGTGTGTTGGAG  Raphanus raphanistrum subsp. maritimus
FD534887       --> CGGCGTGGCTGACAACAAGTTTCACTCCGTATAAAGCAAGTGTGTTGGAG  Raphanus raphanistrum subsp. maritimus
FD945814       --> CGGCGTGGTTGACAACAAGTTTCACTCCGTATAAAGAAAGTGTGTTGGAG  Raphanus sativus cv Early Scarlet Globe

               451    -    501
UN16878        --> TGGAGAGACTTTTTCAAGTTTCAGTATCCTCGTGAAGGACATGACTTCGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982524       <-- ..................................................
EY901633       <-- ..................................................
FD538210       <-- ..................................................
FD531114       <-- ..................................................
FD535460       --> TGGAGAGACTTTTTCAAGTTTCAGTATCCTCGTGAAGGACATGACTTCGC
FD568817       --> TGGAGAGACTTTTTCAAGTTTCAGTATCCTCGTGAAGGACATGACTTCGC
FD986243       --> TGGAGAGACTTTTTCAAGTTTCAGTATCCTCGTGAAGGACATGACTTCGC
EY905131       --> TGGAGAGACTTTTTCAAGTTTCAGTATCCTCGTGAAGGACATGACTTCGC
EV525479       --> TGGAGAGACTTTTTCAAGTTTCAGTATCCTCGTGAAGGACATGACTTCGC
FD534887       --> TGGAGAGACTTTTTCAAGTTTCAGTATCCTCGTGAAGGACATGACTTCGC
FD945814       --> TGGAGAGACTTTTTCAAGTTTCAGTATCCTCGTGAAGGACATGACTTCGC

               501    -    551
UN16878        --> TACTACATGGCCTTCTCTATGCAAGGAACAAGTGATACACCATTTCGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982524       <-- ...............TCTATGCAAGGAACAAGTGATACACCATTTCGAGA  Raphanus raphanistrum subsp. landra
EY901633       <-- .......................AGGAACAAGTGATACACCATTTCGAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538210       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531114       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD535460       --> TACTACATGGCCTTCTCTATGCAAGGAACAAGTGATACACCATTTCGAGA  Raphanus raphanistrum subsp. maritimus
FD568817       --> TACTACATGGCCTTCTCTATGCAAGGAACAAGTGATACACCATTTCGAGA  Raphanus sativus cv Early Scarlet Globe
FD986243       --> TACTACATGGCCTTCTCTATGCAAGGAACAAGTGATACACCATTTCGAGA  Raphanus raphanistrum subsp. landra
EY905131       --> TACTACATGGCCTTCTCTATGCAAGGAACAAGTGATACACCATTTCGAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV525479       --> TACTACATGGCCTTCTCTATGCAGGGAACAAGTGATACACCATTTCGAGA  Raphanus raphanistrum subsp. maritimus
FD534887       --> TACTACATGGCCTTCTCTATGCAAGGAACAAGTGATACACCATTTCGAGA  Raphanus raphanistrum subsp. maritimus
FD945814       --> TACTACATGGCCTTCTCTATGCAAGGAACAAGTGATACACCATTTCGAGA  Raphanus sativus cv Early Scarlet Globe

               551    -    601
UN16878        --> GGATCAAACCAATCACCAAGAAGATCTTAAACATACTCATCAACAATCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982524       <-- GGATCAAACCAATCACCAAGAAGATTTTAAACATACTCATCAACAATCTA  Raphanus raphanistrum subsp. landra
EY901633       <-- GGATCAAACCAATCACCAAGAAGATCTTAAACATACTCATCAACAATCTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538210       <-- .....................AGATCTTAAACATACTCATCAACAATCTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531114       <-- .............................................ATCTA  Raphanus raphanistrum subsp. maritimus
FD535460       --> TGATCAAACCAATCACCAAGAAGATCTTAAACATACTCATCAACAATCTA  Raphanus raphanistrum subsp. maritimus
FD568817       --> CGATCAAACCAATCACCAAGAAGATCTTAAACATACTCATCAACAATCTA  Raphanus sativus cv Early Scarlet Globe
FD986243       --> GGATCAAACCAATCACCAAGAAGATTTTAAACATACTCATCAACAATCTA  Raphanus raphanistrum subsp. landra
EY905131       --> GGATCAAACCAATCACCAAGAAGATCTTAAACATACTCATCAACAATCTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV525479       --> TGATCAAACCAATCACCAAGAAGATCTTAAACATACTCATCAACAATCTA  Raphanus raphanistrum subsp. maritimus
FD534887       --> TGATCAAACCAATCACCAAGAAGATCTTAAACATACTCATCAACAATCTA  Raphanus raphanistrum subsp. maritimus
FD945814       --> CGATCAAACCAACCACCAAGAAGATCTTAAACATACTCATCAACAATCTA  Raphanus sativus cv Early Scarlet Globe

               601    -    651
UN16878        --> AATTCAGTCGTAGATGAGTCTAATGAAGACGCACTAATTGGAACTATGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982524       <-- AATTCAGTCGTAGATGAGTCTAATGAAGACGCACTAATTGGAACTATGTG  Raphanus raphanistrum subsp. landra
EY901633       <-- AATTCAATCGTAGATGAGTCTAACGAAGACGCACTAATTGGAACTATGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538210       <-- AATTCAATCGTAGATGAGTCTAACGAAGACGCACTAATTGGAACTATGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531114       <-- AATTCAGTCGTAGATGAGTCTAATGAAGATGCACTAATTGGAACTATGAG  Raphanus raphanistrum subsp. maritimus
FD535460       --> AATTCAGTCGTAGATGAGTCTAATGAAGATGCACTAATTGGAACTATGAG  Raphanus raphanistrum subsp. maritimus
FD568817       --> AATTCAGTCGTAGATGAGTCTAACGAAGACGCACTAATTGGAACTATGAG  Raphanus sativus cv Early Scarlet Globe
FD986243       --> AATTCAGTCGTAGATGAGTCTAATGAAGACGCACTAATTGGAACTATGTG  Raphanus raphanistrum subsp. landra
EY905131       --> AATTCAATCGTAGATGAGTCTAACGAAGACGCACTAATTGGAACTATGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV525479       --> AATTCAGTCGTAGATGAGTCTAATGAAGATGCACTAATTGGAACTATGAG  Raphanus raphanistrum subsp. maritimus
FD534887       --> AATTCAGTCGTAGATGAGTCTAATGAAGATGCACTAATTGGAACTATGAG  Raphanus raphanistrum subsp. maritimus
FD945814       --> AATTCAGTCGTAGATGAGTCTAACGAAGACGCACTAATTGGAACTATGAG  Raphanus sativus cv Early Scarlet Globe

               651    -    701
UN16878        --> AATGAACTTCAACTATTATCCAGAGTGTCCTGAACCAAACCTGGCAATAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982524       <-- AATGAACTTCAACTATTATCCAGAGTGTCCTGAACCAAACCTGGCAATAG
EY901633       <-- AATGAACTTCAACTATTATCCAGAGTGTCCTGAACCAAACCTGGCAATAG
FD538210       <-- AATGAACTTCAACTATTATCCAGAGTGTCCTGAACCAAACCTGGCAATAG
FD531114       <-- AATGAACTTCAACTATTATCCAGAGTGTCCTGAACCAAACCTGGCAATAG
FD535460       --> AATGAACTTCAACTATTATCCAGAGTGTCCTGAACCAAACCTGGCAA...
FD568817       --> AATGAACTTCAACTATTATCCAGAGTGTCCTGAACCAAATCTGGCAATAG
FD986243       --> AATGAACTTCAACTATTATCCAGAGTGTCCTGAACCAAACCTGGCAATAG
EY905131       --> AATGAACTTCAACTATTATCCAGAGTGTCCTGAACCAAACCTGGCAATAG
EV525479       --> AATGAACTTCAACTATTATCCAGAGTGTCCTGAACCAAACCTGGCAATAG
FD534887       --> AATGAACTTCAACTATTATCCAGAGTGTCCTGAACCAAACCTGGCAATAG
FD945814       --> AATGAACTTCAACTATTATCCAGAGTGTCCTGAACCAAATCTGGCAATAG

               701    -    751
UN16878        --> GAACTGGCCGCCATACAGACATCAACACCCTCACTCTCCTCATACAAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982524       <-- GAACTGGCCGCCATACAGACATCAACACCCTCACTCTCCTCATACAAGAA
EY901633       <-- GAACTGGCCGCCATACAGACATCAACACCCTCACTCTCCTCATACAAGAA
FD538210       <-- GAACTGGCCGCCATACAGACATCAACACCCTCACTCTCCTCATACAAGAA
FD531114       <-- GAACTGGCCGCCATACAGACATCAACACCCTCACTCTCCTCATACAAGAA
FD535460       --> ..................................................
FD568817       --> -AACTGGCCGCCATACAGACATCAACATCCTCACTCTC-TCATACA-GAA
FD986243       --> GA-CTGGCCGCCATACAGACATCA-CA-CCTCACTCTCtc..........
EY905131       --> -AACTGGCCGCCATACAGACATCAACACCCTCACTCTCCTCATACAAGAA
EV525479       --> GAACTGGCCGCCATACAGACATCAACACCCTCACTCTCCTCATACAAGAA
FD534887       --> GAACTGGCCGCCATACAGACATCAACACCCTCACTCTCCTCATACAAGAA
FD945814       --> GAACTGGCCGCCATACAGACATCAACATCCTCACTCTCCTCATACAAGAA

               751    -    801
UN16878        --> GATGGCGTCTTAAGCAGCCTATATGGTCGAGCCAGCGAGCACGAGGACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982524       <-- GATGGCGTCTTAAGCAGCCTATATGGTCGAGCCAGCGAGCACGAGGACAA  Raphanus raphanistrum subsp. landra
EY901633       <-- GATGGCGTCTTAAGCAGCCTATATGGTCGAGCCAGCGAGCACGAGGACAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538210       <-- GATGGCGTCTTAAGCAGCCTATATGGTCGAGCCAGCGAGCACGAGGACAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531114       <-- GATGGCGTCTTTAGCAGCCTATATGGTCGAGCCAGCGAGCACGAGGACAA  Raphanus raphanistrum subsp. maritimus
FD535460       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD568817       --> GATG-CGTCT--AGCAGCCTATATGGTCGAGtcgagca............  Raphanus sativus cv Early Scarlet Globe
FD986243       --> ..................................................  Raphanus raphanistrum subsp. landra
EY905131       --> GATGGCGTCTTAAGCAGCCTATATGGTCGAGC-AGCGAGCACGAG.....  Raphanus raphanistrum subsp. raphanistrum (MS)
EV525479       --> GATGGCGTCTTTAGCAGCCTATATGGTCGAGCCAGCGAGCACGAGGACAA  Raphanus raphanistrum subsp. maritimus
FD534887       --> GATGGCGTCTTTAGCAGCCTATATGGTCGAGCCAGCGAGCACGAGGACAA  Raphanus raphanistrum subsp. maritimus
FD945814       --> GATGGCGTCTTAAGCAGCCTATATGGTCGAGCCAGCGAGCACGAGGACAA  Raphanus sativus cv Early Scarlet Globe

               801    -    851
UN16878        --> ATGGGTTGATGTCCCTCCGATTCCGGGAGCCATTGTTGTTAATGTTGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982524       <-- ATGGGTTGATGTCCCTCCAATTCCGGGAGCCATTGTTGTTAATGTCGGAG  Raphanus raphanistrum subsp. landra
EY901633       <-- ATGGGTCGATGTCCCTCCAATTCCGGGAGCCATTGTTGTTAATGTTGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538210       <-- ATGGGTCGATGTCCCTCCAATTCCGGGAGCCATTGTTGTTAATGTTGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531114       <-- ATGGGTTGATGTCCCTCCGATTCCGGGAGCCATTGTTTTTAATGTTGGAG  Raphanus raphanistrum subsp. maritimus
FD535460       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD568817       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD986243       --> ..................................................  Raphanus raphanistrum subsp. landra
EY905131       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV525479       --> ATGGGTTGATGTCCCTCCGATTCCGGGAGCCATTGTTGTTAATGTTGGAG  Raphanus raphanistrum subsp. maritimus
FD534887       --> ATGGGTTGATGTCCCTCCGATTCCGGGAGCCATTGTTGTTAATGTTGGAG  Raphanus raphanistrum subsp. maritimus
FD945814       --> ATGGGTTGATATCCCTCCGACTCCGGGAGCCATTGTTGTTAATGTTGGAG  Raphanus sativus cv Early Scarlet Globe

               851    -    901
UN16878        --> ACGTATTACAGATATTGAGCAACGGTAAGTATAAGAGCGTGGAGCATTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982524       <-- ACGTATTACAAATATTGAGCAACGGTAAGTATAAGAGCGTGGAGCATTGT
EY901633       <-- ACGTATTACAGATATTGAGCAACGGTAAGTATAAGAGCGTGGAGCATTGT
FD538210       <-- ACGTATTACAGATATTGAGCAACGGTAAGTATAAGAGCGTGGAGCATTGT
FD531114       <-- ACGTATTACAGATATTGAGCAACGGTAAGTATAAGAGCGTGGAGCATTGT
FD535460       --> ..................................................
FD568817       --> ..................................................
FD986243       --> ..................................................
EY905131       --> ..................................................
EV525479       --> ACGTATTACAGATATTGAGCAACGGTAAGTATAAGAGCGTGGAGCATTGT
FD534887       --> ACGTATTACAGATATTGAGCAACGGTAAGTATAAGAGCGTGGAGCATTGT
FD945814       --> ACGTATTACAGATATTGAGCAACGGTAAGTATAAGAGCGTGGAGCATTGT

               901    -    951
UN16878        --> GTATTGGTCCATAA-GGGTTGTAGCCGAAT-T-CTGTCCCTATTTTCTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982524       <-- GTATTGGTCCATAA-GGGTTGTAGCCGAAT-TTCTGTCCCTATTTTTTAC  Raphanus raphanistrum subsp. landra
EY901633       <-- GTATTGGTTCATAA-GGGTTGTAGCCGAATCT-CTGTCCCTATTTTCTAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538210       <-- GTATTGGTTCATAA-GGGTTGTAGCCGAAT-T-CTGTCCCTATTTTCTAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531114       <-- GTATTGGTCCATAA-GGGTTGTAGCCGAAT-TTCTGTCCCTATTTTTTAC  Raphanus raphanistrum subsp. maritimus
FD535460       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD568817       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD986243       --> ..................................................  Raphanus raphanistrum subsp. landra
EY905131       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV525479       --> GTATTGGTCCATAAAGGGTTGTAGCCGAAT-TTCTGTCCCTATTTTCTAC  Raphanus raphanistrum subsp. maritimus
FD534887       --> GTA...............................................  Raphanus raphanistrum subsp. maritimus
FD945814       --> GTATTGGTCCATAA-GGGTTGTAGCCGATT-T-CTGTCCCTATTTTCTAC  Raphanus sativus cv Early Scarlet Globe

               951    -   1001
UN16878        --> GGACCAGTTGATGATACGGTTATCGAGCCATTACCGGAGGTGCTAGAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982524       <-- GGACCAGTTGATGATACGGTTATCGAGCCATTACCGGAGGTGCTAGAGAA
EY901633       <-- GGACCAGTTGATGATACGGTTATCGAGCCATTACCGGAGGTGCTAGAGAA
FD538210       <-- GGACCAGTTGATGATACGGTTATCGAGCCATTACCGGAGGTGCTAGAGAA
FD531114       <-- GGACCAGTTGATGATACGGTTATCGAGCCATTATGGGAGGTGCTAGAGAA
FD535460       --> ..................................................
FD568817       --> ..................................................
FD986243       --> ..................................................
EY905131       --> ..................................................
EV525479       --> GGACCAGTTGATGATACGGTTATCGAGCCATTATGGGA-GTGCTAGAGAA
FD534887       --> ..................................................
FD945814       --> G-A-CAGTTGATGATACGGT-ATCGAGCCATTACC...............

               1001   -   1051
UN16878        --> CAATGAGGTGGCTCGGTACAGAAAGATTGTGTATTCTTCGAACTATCTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982524       <-- CAATGAGGTGGCTCGGTACAGAAAGATTGTGTATTCTTCGAACTATCTTA
EY901633       <-- CAATGAGGTGGCTCGGTACAGAAAGATTGTGTATTCTTCGAACTATCTGA
FD538210       <-- CAATGAGGTGGCTCGGTACAGAAAGATTGTGTATTCTTCGAACTATCTGA
FD531114       <-- CAATGAGGTGGCTCGGTACAGAAAGATTGTGTATTTTTCGAACTATTTGA
FD535460       --> ..................................................
FD568817       --> ..................................................
FD986243       --> ..................................................
EY905131       --> ..................................................
EV525479       --> CAtgagt...........................................
FD534887       --> ..................................................
FD945814       --> ..................................................

               1051   -   1101
UN16878        --> AGGATGTTTTTGGTAGACCCCATGATGGAAAGAAGACTATTGGATCGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982524       <-- AGGATGTTTTGGGAAGACCCCATGATGGAAAGAAGACTATTGGATCGATC
EY901633       <-- AGGATGTTTTTGGTAGACCCCATGATGGAAAGAAGACTATTGGATCGATC
FD538210       <-- AGGATGTTTTTGGTAGACCCCATGATGGAAAGAAGACTATTGGATCGATC
FD531114       <-- AGGATGTTTTTGGTAGACCCCATGATGGAAAGAAGACTATTGGATCGATC
FD535460       --> ..................................................
FD568817       --> ..................................................
FD986243       --> ..................................................
EY905131       --> ..................................................
EV525479       --> ..................................................
FD534887       --> ..................................................
FD945814       --> ..................................................

               1101   -   1151
UN16878        --> AAGCTACCATGATACGAGATACATAGATTTATATAAAGATCTATAGCTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982524       <-- AAGCTACCATGATACAAGATACATAGATTTATATAAAGATCCATAGCTAA
EY901633       <-- AAGCTACCATGATACGAGATACATAGATTTATATAAAGATCTATAGCTAA
FD538210       <-- AAGCTACCATGATACGAGATACATAGATTTATATAAAGATCTATAGCTAA
FD531114       <-- AACCTACCATGATAGGAGATACATAGATTTATATAAAGATCTATAGCTAA
FD535460       --> ..................................................
FD568817       --> ..................................................
FD986243       --> ..................................................
EY905131       --> ..................................................
EV525479       --> ..................................................
FD534887       --> ..................................................
FD945814       --> ..................................................

               1151   -   1201
UN16878        --> AAATCGATCCTACTAATATCTTTGTGATCACAAAAAAACTATCTTATGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982524       <-- ACATCGATCCTACTAATATCTTTGTGATCACAAAAAA-CTATCTTATGTC
EY901633       <-- AAATCGATCCTACTAATATCTTTATGATCA-AAAAAAACTATCTTATGTC
FD538210       <-- AAATCGATCCTACTAATATCTTTATGATCACAAAAAAACTATCTTATGTC
FD531114       <-- AAATCGATCCTACTAATATCTTTGTGATCACAAAAAAACTATCTTATGTC
FD535460       --> ..................................................
FD568817       --> ..................................................
FD986243       --> ..................................................
EY905131       --> ..................................................
EV525479       --> ..................................................
FD534887       --> ..................................................
FD945814       --> ..................................................

               1201   -   1251
UN16878        --> TAAACTGTATATTCTCTTTTAACTTTATGTAAAATATGATACATTAAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982524       <-- TAAAATGTATATTCTCTTTCAACTTTATGTAAAATATGATACATTAAGAA
EY901633       <-- TAAACTGTATATTCTCTTTTAACTTTATGTAAAATATGATACATTAAGCA
FD538210       <-- TAAACTGTATATTCTCTTTTAACTTTATGTAAAATATGATACATTAAGCA
FD531114       <-- TAAAATGTATATTTTCTTTCAACTTTATGTAAAATATGATACATTAAGCA
FD535460       --> ..................................................
FD568817       --> ..................................................
FD986243       --> ..................................................
EY905131       --> ..................................................
EV525479       --> ..................................................
FD534887       --> ..................................................
FD945814       --> ..................................................

               1251   -   1301
UN16878        --> ATTACTTAAGTTTGATCCTCTAATTTTTTTTGATAAAGTTTGATCCTAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD982524       <-- ATTACTTAAGTTTGATC.................................
EY901633       <-- ACTAC.............................................
FD538210       <-- ACTACTTAAGTTTGATtc................................
FD531114       <-- ATTACTTAAGTTTGATCCTCTAATTTTTTTTGATAAAGTTTGATCCTAGA
FD535460       --> ..................................................
FD568817       --> ..................................................
FD986243       --> ..................................................
EY905131       --> ..................................................
EV525479       --> ..................................................
FD534887       --> ..................................................
FD945814       --> ..................................................

               1301   -   1351
UN16878        --> ATTCAAGC
                   ~~~~~~~~
FD982524       <-- ........
EY901633       <-- ........
FD538210       <-- ........
FD531114       <-- ATTCAAGC
FD535460       --> ........
FD568817       --> ........
FD986243       --> ........
EY905131       --> ........
EV525479       --> ........
FD534887       --> ........
FD945814       --> ........