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Alignment for radish unigene UN16887

               1      -     51
UN16887        --> ATTTTGGAAAGTAACAATTATTTATTTCTGAATATCGAGTAATTAAATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569698       <-- ...TTGGAAAGTAACAATTATTTATTTCTGAATATCGAGTAATTAAATTG
EV552505       <-- .......................................TAATTAAATTG
FD540941       <-- ..................................................
FD559608       <-- ..................................................
EY932206       <-- ..................................................
EX770050       <-- ..................................................
FD540598       <-- ..................................................
EY930352       <-- ..................................................
EV547412       --> ATTTTGGAAAGTAACAATTATTTATTTCTGAATATCGAGTAATTAAATTG
FD537062       --> ......GAAAGTAACAATTATTTATTTCTGAATATCGAGTAATTAAATTG
FD537341       --> .....aGAAAGTAACAATTATTTATTTCTGAATATCGAGTAATTAAATTG
EY926577       --> ......ggAAGTAACAATTATTTATTTCTGAATATCGAGTAATTAAATTG
EX774306       --> ...........................CTGAATATCGAGTAATTAAATTG
EY927984       --> ..................................................

               51     -    101
UN16887        --> TTAATTAACAATAAACTTTTCAACACAAATTTTCAAGAAAAAGAGTTATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569698       <-- TTAATTAACAATAAACTTTTCAACACAAACTTTCAAGAAAAAGAGTTATA
EV552505       <-- TTAATTAACAATAAACTTTTCAACACAAATTTTCAAGAAAAAGAGTTATA
FD540941       <-- ............................................GTTATA
FD559608       <-- ...............................................ATA
EY932206       <-- ..................................................
EX770050       <-- ..................................................
FD540598       <-- ..................................................
EY930352       <-- ..................................................
EV547412       --> TTAATTAACAATAAACTTTTCAACACAAATTTTCAAGAAAAAGAGTTATA
FD537062       --> TTAATTAACAATAAACTTTTCAATACAAATTTTCAAGAAAAAGAGTTATA
FD537341       --> TTAATTAACAATAAACTTTTCAATACAAATTTTCAAGAAAAAGAGTTATA
EY926577       --> TTAATTAACAATAAACTTTTCAACACAAATTTTCAAGAAAAAGAGTTATA
EX774306       --> TTAATTAACAATAAACTTTTCAACACAAATTTTCAAGAAAAAGAGTTATA
EY927984       --> ..................................................

               101    -    151
UN16887        --> CAGATTCAAGAAAGTAAAAGCTAATCAATCATTTGGTCCAACATCTGGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569698       <-- CAGATTCAAGAAAGTAAAAGCTAATCAATCATTTGGTCCAACATCTGGTT
EV552505       <-- CAGATTCAAGAAAGTAAAAGCTAATCAATCATTTGGTCCAACATCTGGTT
FD540941       <-- CAGATTCAAGAAAGTAAAAGCTAATCAATCATTTGGTCCAACATCTGGTT
FD559608       <-- CAGAT-CAAGAAAGTAAA-GCTAATCA-TCATTTG-TCCAACATCTG-TT
EY932206       <-- ..............gtAAAGCTA-TCAATCATT-GGTCCAACATCTGGTT
EX770050       <-- ..................................................
FD540598       <-- ..................................................
EY930352       <-- ..................................................
EV547412       --> CAGATTCAAGAAAGTAAAAGCTAATCAATCATTTGGTCCAACATCTGGTT
FD537062       --> CAGATTCAAGAAAGTAAAAGCTAATCAATCATTTGATCCGACATCTGGTT
FD537341       --> CAGATTCAAGAAAGTAAAAGCTAATCAATCATTTGGTCCAACATCTGGTT
EY926577       --> CAGATTCAAGAAAGTAAAAGCTAATCAATCATTTGGTCCAACATCTGGTT
EX774306       --> CAGATTCAAGAAAGTAAAAGCTAATCAATCATTTGGTCCAACATCTGGTT
EY927984       --> ....................CTAATCAATCATTTGGTCCAACATCTGGTT

               151    -    201
UN16887        --> TTCATGATCAATGATATCTAAAACCTTCAAAGGACTATGGTAGATCTACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569698       <-- TTCATGATCAATGATATCTAAAACCTTCAAAGGACTATGGTAGATCTACC
EV552505       <-- TTCATGATCAATGATATCTAAAACCTTCAAAGGACTATGGCAGATCTACC
FD540941       <-- TTCATGATCAATGATATCTAAAAC-TTCAAAGGACTATGGTAGATCTACC
FD559608       <-- TTCATGATCAATGATATCTAAAAC-TTCAAAGGACTATGGTAGATCTACC
EY932206       <-- TTCATGATCAATGATATCTAA--ACTTCAAAGGACTATGGTAGATCTACC
EX770050       <-- ..............................AGGACTATGGTAGATCTACC
FD540598       <-- ..................................................
EY930352       <-- ..................................................
EV547412       --> TTCATGATCAATGATATCTAAAACCTTCAAAGGACTATGGCAGATCTACC
FD537062       --> TTCATGATCAATGATATCTAAAACCTTCAAAGGACTATGGTAGATCTACC
FD537341       --> TTCATGATCAATGATATCTAAAACCTTCAAAGGACTATGGTAGATCTACC
EY926577       --> TTCATGATCAATGATATCTAAAACCTTCAAAGGACTATGGTAGATCTACC
EX774306       --> TTCATGATCAATGATATCTAAAACCTTCAAAGGACTATGGTAGATCTACC
EY927984       --> TTCATGATCAATGATATCTAAAACCTTCAAAGGACTATGGGAAATCTACC

               201    -    251
UN16887        --> GATCTGCCCCCACTGTTCCGTCTTGAACGTATTATCCGGCGA--------
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569698       <-- GATCTGCCCCCACTGTTCCGTCTTGAACGTATTATCCGGCGAGGCGGCGA  Raphanus raphanistrum subsp. landra
EV552505       <-- GATCTGCCCCCACTGTTCCGTCTTGAACGTATTATCCGGCGA--------  Raphanus raphanistrum subsp. raphanistrum (NY)
FD540941       <-- GATCTGCCCCCACTGTTCCGTCTTGAACGTATTATCCGGCGA--------  Raphanus raphanistrum subsp. raphanistrum (MS)
FD559608       <-- GATCTGCCCCCACTGT-CCGTCTTGAACGTATTATCCGGCGAGGCGGCGA  Raphanus raphanistrum subsp. landra
EY932206       <-- GATCTGCCCCCACTGTTCCGTCTTGAACGTATTATCCGGCGA--------  Raphanus sativus var. oleiformis
EX770050       <-- GATCTGCCCCCACTGTTCCGTCTTGAACGTATTATCCGGCGAGGCGGCGA  Raphanus raphanistrum subsp. landra
FD540598       <-- ......................TTGAACGTATTATCCGGCGA--------  Raphanus raphanistrum subsp. raphanistrum (MS)
EY930352       <-- ..................................................  Raphanus sativus var. oleiformis
EV547412       --> GATCTGCCCCCACTGTTCCGTCTTGAACGTATTATCCGGCGA--------  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537062       --> GATCTGCCCCCACTGTTCCGTCTTGAACGTATTATCCGGCGA--------  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537341       --> GATCTGCCCCCACTGTTCCGTCTTGAACGTATTATCCGGCGA--------  Raphanus raphanistrum subsp. raphanistrum (MS)
EY926577       --> GATCTGCCCCCACTGTTCCGTCTTGAACGTATTATCCGGCGA--------  Raphanus sativus var. oleiformis
EX774306       --> GATCTGCCCCCACTGTTCCGTCTTGAACGTATTATCCGGCGAGGCGGCGA  Raphanus raphanistrum subsp. landra
EY927984       --> GATCTGCCCCCCCTGTTCCGTCTTGAACGTATTATCCGGCGA--------  Raphanus sativus var. oleiformis

               251    -    301
UN16887        --> ACTCCGACGATTTTACCGTTATATTAAACAGAGGAACATGGCGAAAA-GA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569698       <-- ACTCCGACGATTTTACCGTTATATTAAACAGAGGAACATGGCGAAAA-GA  Raphanus raphanistrum subsp. landra
EV552505       <-- ACTCCGACGATTTTACCGTTAAATTAAACAGAGGAACATGGAGAAAA-GA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD540941       <-- ACTCCGACGATTTTACCTTTATATTAAACAGAGGAACATGGCGAAAA-GA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD559608       <-- ACTCCGACGATTTTACCGTTATATTAAACAGAGGAACATGGCGAAAAAGA  Raphanus raphanistrum subsp. landra
EY932206       <-- ACTCCGACGATTTTACCGTTAAATTAAACAGAGGAACATGGCGAAAA-GA  Raphanus sativus var. oleiformis
EX770050       <-- ACTCCGACGATTTTACCGTTATATTAAACAGAGGAACATGGCGAAAA-GA  Raphanus raphanistrum subsp. landra
FD540598       <-- ACTCCGACGATTTTACCTTTATATTAAACAGAGGAACATGGCGAAAA-GA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY930352       <-- ...............CCGTTAAATTAAACAGAGGAACATGGCGAAAA-GA  Raphanus sativus var. oleiformis
EV547412       --> ACTCCGACGATTTTACCGTTAAATTAAACAGAGGAACATGGAGAAAA-GA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537062       --> ACTCCGACGATTTTACCTTTATATTAAACAGAGGAACATGGCGAAAA-GA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537341       --> ACTCCGACGATTTTACCTTTATATTAAACAGAGGAACATGGCGAAAA-GA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY926577       --> ACTCCGACGATTTTACCGTTAAATTAAACAGAGGAACATGGCGAAAA-GA  Raphanus sativus var. oleiformis
EX774306       --> ACTCCGACGATTTTACCGTTATATTAAACAGAGGAACATGGCGAAAA-GA  Raphanus raphanistrum subsp. landra
EY927984       --> AC................................................  Raphanus sativus var. oleiformis

               301    -    351
UN16887        --> GCAAACATAACAGAACCAGAACCCATAAACCGATCTGAACCAGAACCTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569698       <-- GCAAACATAACAGAACCAGAACCCATAAACCGATCTGAACCAGAACCTGG  Raphanus raphanistrum subsp. landra
EV552505       <-- GCAAACATAACAGAACCAGAACCCATAAACCGATCTGAACCAGAACCTGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD540941       <-- GCAAACATAATAGAACTAGAATCCATAAACCGATCTGAACCGGAACCTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD559608       <-- GCAAACATAACAGAACCAGAACCCATAAACCGATCTGAACCAGAACCTGG  Raphanus raphanistrum subsp. landra
EY932206       <-- GCAAACATAACAGAACCAGAACCCATAAACCGATCTGAACCAGAACCTGG  Raphanus sativus var. oleiformis
EX770050       <-- GCAAACATAACAGAACCAGAACCCATAAACCGATCTGAACCAGAACCTGG  Raphanus raphanistrum subsp. landra
FD540598       <-- GCAAACATAATAGAACTAGAATCCATAAACCGATCTGAACCGGGACCTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY930352       <-- GCAAACATAACAGAACCAGAACCCATAAACCGATCTGAACCAGAACTTGG  Raphanus sativus var. oleiformis
EV547412       --> GCAAACATAACAGAACCAGAACCCATAAACCGATCTGAACCAGAACCTGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537062       --> GCAAACATAATAGAACTAGAATCCATAAACCGATCTGAACCGGGACCTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537341       --> GCAAACATAATAGAACTAGAATCCATAAACCGATCTGAACCGGAACCTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY926577       --> GCAAACATAACAGAACCAGAACCCATAAACCGATCTGAACCAGAACTTGG  Raphanus sativus var. oleiformis
EX774306       --> GCAAACATAACAGAACCAGAACCCATAAACCGATCTGAACCAGAACCTGG  Raphanus raphanistrum subsp. landra
EY927984       --> ..................................................  Raphanus sativus var. oleiformis

               351    -    401
UN16887        --> CGGTGGCGTATGATAGTAAAACGGGAAATAAGGGACGATAGGGTTCGGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569698       <-- CGGTGGCGTATGATAGTAAAACGGGAAATAAGGGACGATAGGGTTCGGCG
EV552505       <-- CGGTGGCGTATGATAGTAAAACGGGAAATAAGGGACGATAGGGTTCGGCG
FD540941       <-- CGGTGGCGTATGATAGTAAAACGGGAAATAAGGGACGATAGGGTTCGGCG
FD559608       <-- CGGTGGCGTATGATAGTAAAACGGGAAATAAGGGACGATAGGGTTCGGCG
EY932206       <-- CGGTGGCGCATGATAGTAAAACGGGAAATAAGGGACGATAGGGTTCGGCG
EX770050       <-- CGGTGGCGTATGATAGTAAAACGAGAAATAAGGGACGATAGGGTTCGGCG
FD540598       <-- CGGTGGCGTATGATAGTAAAACGGGAAATAAGGGACGATAGGGTTCGGCG
EY930352       <-- CGGTGGCGTATGATAGTAAAACGGGAAATAAGGGACGATAGGGTTCGGCG
EV547412       --> CGGTGGCGTATGATAGTAAAACGGGAAATAAGGGACGATAGGGTTCGGCG
FD537062       --> CGGTGGCGTATGATAGTAAAACGGGAAATAAGGGACGATAGGGTTCGGCG
FD537341       --> CGGTGGCGTATGATAGTAAAACGGGAAATAAGGGACGATAGGGTTCGGCG
EY926577       --> CGGTGGCGTATGATAGTAAAACGGGAAATAAGGGACGATAGGGTTCGGCG
EX774306       --> CGGTGGCGTATGATAGTAAAACGAGAAATAAGGGACGATAGGGTTCGGCG
EY927984       --> ..................................................

               401    -    451
UN16887        --> GAGGCGGCGTGGGATAGTTTCCTGAATACGGGGGAGGATAGTAATAACCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569698       <-- GAGGCGGCGTGGGATAGTTTCCTGAATACGGGGGAGGATAGTAATAACCT  Raphanus raphanistrum subsp. landra
EV552505       <-- GAGGCGGCGTGGGATAGTTTCCTGAATACGGGGGAGGATAGTAATAACCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD540941       <-- GAGGCGGCGTAGGATAGTTTCCTGAATACGGCGGAGGATAGTAATAACCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD559608       <-- GAGGCGGCGTGGGATAGTTTCCTGAATACGGGGGAGGATAGTAATAACCT  Raphanus raphanistrum subsp. landra
EY932206       <-- GAGGCGGCGTGGGATAGTTTCCTGAATACGGGGGAGGATAGTAATAACCT  Raphanus sativus var. oleiformis
EX770050       <-- GAGGCGGCGTGGGATAGTTTCCTGAATACGGGGGAGGATAGTAATAACCT  Raphanus raphanistrum subsp. landra
FD540598       <-- GAGGCGGCGTAGGATAGTTTCCTGAATACGGCGGAGGATAGTAATAACCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY930352       <-- GAGGCGGCGTGGGATAGTTTCCTGAATACGGGGGAGGATAGTAATAACCT  Raphanus sativus var. oleiformis
EV547412       --> GAGGCGGCGTGGGATAGTTTCCTGAATACGGGGGAGGATAGTAATAACCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537062       --> GAGGCGGCGTAGGATAGTTTCCTGAATACGGCGGAGGATAGTAATAACCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537341       --> GAGGCGGCGTAGGATAGTTTCCTGAATACGGCGGAGGATAGTAATAACCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY926577       --> GAGGCGGCGTGGGATAGTTTCCTGAATACGGGGGAGGATAGTAATAACCT  Raphanus sativus var. oleiformis
EX774306       --> GAGGCGGCGTGGGATAGTTTCCTGAATACGGGGGAGGATAGTAATAACCT  Raphanus raphanistrum subsp. landra
EY927984       --> ..................................................  Raphanus sativus var. oleiformis

               451    -    501
UN16887        --> TGGCCGCCGTCACCGTAAGGAGGAGGGTATTTGTCGCCACCGGACTGTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569698       <-- TGGCCGCCGTCACCGTAAGGAGGAGGGTATTTGTCGCCACCGGACTGTGA  Raphanus raphanistrum subsp. landra
EV552505       <-- TGGCCGCCGTCACCGTAAGGAGGAGGGTATTTCTCGCCACCGGACTGTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD540941       <-- TGGCCGCCGTCACCGTAAGGAGGAGGGTATTTGTCGCCACCGGACTGTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD559608       <-- TGGCCGCCGTCACCGTAAGGAGGAGGGTATTTGTCGCCACCGGACTGTGA  Raphanus raphanistrum subsp. landra
EY932206       <-- TGGCCGCCGTCACCGTAAGGAGGAGGGTATTTCTCGCCACCGGACTGTGA  Raphanus sativus var. oleiformis
EX770050       <-- TGGCCGCCGTCACCGTAAGGAGGAGGGTATTTGTCGCCACCGGACTGTGA  Raphanus raphanistrum subsp. landra
FD540598       <-- TGGCCGCCGTCACCGTAAGGAGGAGGGTATTTGTCGCCACCGGACTGTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY930352       <-- TGGCCGCCGTCACCGTAAGGAGGAGGGTATTTCTCGCCACCGGACTGTGA  Raphanus sativus var. oleiformis
EV547412       --> TGGCCGCCGTCACCGTAAGGAGGAGGGTATTTCTCGCCACCGGACTGTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537062       --> TGGCCGCCGTCACCGTAAGGAGGAGGGTATTTGTCGCCACCGGACTGTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537341       --> TGGCCGCCGTCACCGTAAGGAGGAGGGTATTTGTCGCCACCGGACTGTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY926577       --> TGGCCGCCGTCACCGTAAGGAGGAGGGTATTTCTCGCCACCGGACTGTGA  Raphanus sativus var. oleiformis
EX774306       --> TGGCCGCCGTCACCGTAAGGAGGAGGGTATTTGTCGCCACCGGACTGTGA  Raphanus raphanistrum subsp. landra
EY927984       --> ..................................................  Raphanus sativus var. oleiformis

               501    -    551
UN16887        --> AGGAGGAGGGTAATAGTAAGAGCTACCACCACCGGAGCTGGGAGGAGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569698       <-- AGGAGGAGGGTAATAGTAAGAGCTACCACCACCGGAGCTGGGAGGAGAAG
EV552505       <-- AGGAGGAGGGTAATAGTAAGAGCTACCACCACCGGAGCTGGGAGGAGAAG
FD540941       <-- AGGAGGAGGGTAATAGTAAGAGCTACCACCACTGGAGCTGGGAGGAGAAG
FD559608       <-- AGGAGGAGGGTAATAGTAAGAGCTACCACCACCGGAGCTGGGAGGAGAAG
EY932206       <-- AGGAGGAGGGTAATAGTAAGAGCTACCACCACCGGAGCTGGGAGGAGAAG
EX770050       <-- AGGAGGAGGGTAATAGTAAGAGCTACCACCACCGGAGCTGGGAGGAGAAG
FD540598       <-- AGGAGGAGGGTAATAGTAAGAGCTACCGCCACCGGAGCTGGGAGGAGAAG
EY930352       <-- AGGAGGAGGGTAATAGTAAGAGCTACCACCACCGGAGCTGGGAGGAGAAG
EV547412       --> AGGAGGAGGGTAATAGTAAGAGCTACCACCACCGGAGCTGGGAGGAGAAG
FD537062       --> AGGAGGAGGGTAATAGTAAGAGCTACCGCCACCGGAGCTGGGAGGAGAAG
FD537341       --> AGGAGGAGGGTAATAGTAAGAGCTACCACCACTGGAGCTGGGAGGAGAAG
EY926577       --> AGGAGGAGGGTAATAGTAAGAGCTACCACCACCGGAGCTGGGAGGAGAAG
EX774306       --> AGGAGGAGGGTAATAGTAAGAGCTACCACCACCGGAGCTGGGAGGAGAAG
EY927984       --> ..................................................

               551    -    601
UN16887        --> GAGGCGGAGGACATGCGGTAGTGGTTGATGGTGACGGTGGTGGACGGGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569698       <-- GAGGCGGAGGACATGCGGTAGTGGTTGATGGTGACGGTGGTGGGCGGGAA  Raphanus raphanistrum subsp. landra
EV552505       <-- GAGGTGGAGGACATGCAGTAGTGGTTGATGGCGACGGTGGTGGACGAGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD540941       <-- GAGGCGGAGGACATGCGGTAGTGGTTGATGGTGACGGTGGTGGACGAGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD559608       <-- GAGGCGGAGGACATGCGGTAGTGGTTGATGGTGACGGTGGTGGACGGGAA  Raphanus raphanistrum subsp. landra
EY932206       <-- GAGGCGGAGGACATGCAGTAGTGGTTGATGGCGACGGTGGTGGACGAGAA  Raphanus sativus var. oleiformis
EX770050       <-- GAGGCGGAGGACATGCGGTAGTGGTTGATGGTGACGGTGGTGGACGGGAA  Raphanus raphanistrum subsp. landra
FD540598       <-- GAGGCGGAGGACATGCGGTAGTGGTTGATGGTGACGGTGGTGGACGGGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY930352       <-- GAGGCGGAGGACATGCAGTAGTGGTTGATGGCGACGGTGGTGGACGAGAA  Raphanus sativus var. oleiformis
EV547412       --> GAGGTGGAGGACATGCAGTAGTGGTTGATGGCGACGGTGGTGGACGAGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537062       --> GAGGCGGAGGACATGCGGTAGTGGTTGATGGTGACGGTGGTGGACGGGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537341       --> GAGGCGGAGGACATGCGGTAGTGGTTGATGGTGACGGTGGTGGACGAGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY926577       --> GAGGCGGAGGACATGCAGTAGTGGTTGATGGCGACGGTGGTGGA......  Raphanus sativus var. oleiformis
EX774306       --> GAGGCGGAGGACATGCGGTAGTGGTTGATGGTGACGGTGGTGGACGGGAA  Raphanus raphanistrum subsp. landra
EY927984       --> ..................................................  Raphanus sativus var. oleiformis

               601    -    651
UN16887        --> GGTGGCGGAGGGGGAGGATATGATGGGACGGGATTACAAGGATTGTCGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569698       <-- GGTGGCGGAGGGGGAGGATATGATGGGACGGGACCACAAGGATTGTCGCA  Raphanus raphanistrum subsp. landra
EV552505       <-- GGCGGCGGAGGGGGAGGATATGATGGGACTGGATTACAAGGATTGTCGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD540941       <-- GGCGGCGGAGGGGGAGGATATGATGGGACGGGGTTACAAGGATTGTCGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD559608       <-- GGTGGCGGAGGGGGAGGATATGATGGGACGGGATTACAAGGATTGTCGCA  Raphanus raphanistrum subsp. landra
EY932206       <-- GGCGGCGGAGGGGGAGGATATGATGGGACTGGATTACAAGGATTGTCGCG  Raphanus sativus var. oleiformis
EX770050       <-- GGTGGCGGAGGGGGAGGATATGATGGGACGGGATTACAAGGATTGTCGCA  Raphanus raphanistrum subsp. landra
FD540598       <-- GGTGGCGGAGGGGGAGGATATGATGGGACGGGATTACAAGGATTGTCGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY930352       <-- GGCGGCGGAGGGGGAGGATATGATGGGACTGGATTACAAGGATTGTCGCA  Raphanus sativus var. oleiformis
EV547412       --> GGCGGCGGAGGGGGAGGATATGATGGGACTGGATTACAAGGATTGTCGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537062       --> GGTGGCGGAGGGGGAGGATATGATGGGACGGGATTACAAGGATTGTCGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537341       --> GGCGGCGGAGGGGGAGGATATGATGGGACGGGGTTACAAGGATTGTCGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY926577       --> ..................................................  Raphanus sativus var. oleiformis
EX774306       --> GGTGGCGGAAGGGGAGGATATGATGGGACGGGATTACAAGGATTGTCG..  Raphanus raphanistrum subsp. landra
EY927984       --> ..................................................  Raphanus sativus var. oleiformis

               651    -    701
UN16887        --> GGAAGAACACATTGTACAGGAAACAACCTCGTCCTTTGATGTCACTGTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569698       <-- GGAAGAACACATTGTACAGGAAACAACCTCGTCCTTTGATGTCACTGTCG
EV552505       <-- GGAAGAACACATTGTACAGGAAACAACCTCGTCCTTTGATGTCACTGTCG
FD540941       <-- GGAAGAACACATTGTACAGGAAACAACCTCGTCCTTTGATGTCACTGTCG
FD559608       <-- AGAAGAACACATTGTACAGGAAACAACCTCGTCCTTTGATGTCACTGTCG
EY932206       <-- GGAAGAACACATCGTACAGGAAACAACCTCGTCCTTTGATGTCACTGTCG
EX770050       <-- GGAAGAACACATTGTACAGGAAACAACCTCGTCCTTTGATGTCACTGTCG
FD540598       <-- GGAAGAACACATTGTACAGGAAACAACCTCGTCCATTGATGTCACTGTCG
EY930352       <-- GGAAGAACACATTGTACAGGAAACAACCTCGTCCTTTGATGTCACTGTCG
EV547412       --> GGAAGAACACATTGTACAGGAAACAACCTCGTCCTTTGATGTCACTGTCG
FD537062       --> GGAAGAACACATTGTACAGGAAACAACCTCGTCCATTGATGTCACTGTCG
FD537341       --> GGAAGAACACATTGTACAGGAAACAACCTCGTCCTTTGATGTCACTGTCG
EY926577       --> ..................................................
EX774306       --> ..................................................
EY927984       --> ..................................................

               701    -    751
UN16887        --> AAGTCAGTGATAGTAGTAGAATGAGGACAAGTGTAGACAAACCATATAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569698       <-- AAGTCAGTGATAGTAGTAGAATGAGGACAAGTGTAGACAAACCATATAAC  Raphanus raphanistrum subsp. landra
EV552505       <-- AAGTCAGCGATAGTAGTAGAATGAGGACAAGTGTAGACAAACCATATAAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD540941       <-- AAGTCAGTGATAGTAGTAGAATGAGGACAAGTATAGACAAACCATATAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD559608       <-- AAGTCAGTGATAGTGGTAGAATGGGGACAAGTGTAGACAAACCATATAAC  Raphanus raphanistrum subsp. landra
EY932206       <-- AAGTCAGCGATAGTAGTAGAATGAGGACAAGTGTAGACAAACCATATAAC  Raphanus sativus var. oleiformis
EX770050       <-- AAGTCAGTGATAGTAGTAGAATGAGGACAAGTGTAGACAAACCATATAAC  Raphanus raphanistrum subsp. landra
FD540598       <-- AAGTCAGTGATAGCAGTAGAATGAGGACAAGTGTAGACAAACCATATAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY930352       <-- AAGTCAGCGATAGTAGTAGAATGAGGACAAGTGTAGACAAACCATATAAC  Raphanus sativus var. oleiformis
EV547412       --> AAGTCAGCGATAGTAGTAGAATGAGGACAAGTGTAGACAAACCATATAAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537062       --> AAGTCAGTGATAGCAGTAGAATGAGGACAAGTGTAGACAAACCATATAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537341       --> AAGTCAGTGATAGTAGTAGAATGAGGACAAGTATAGACAAACCATATAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY926577       --> ..................................................  Raphanus sativus var. oleiformis
EX774306       --> ..................................................  Raphanus raphanistrum subsp. landra
EY927984       --> ..................................................  Raphanus sativus var. oleiformis

               751    -    801
UN16887        --> TGGTTTGCTTCCATTGTCAGAGATTTGGATTCAGATACTTGACTTTGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569698       <-- TGGTTTGCTTCCATTGTCAGAGATTTGGATTCAGATACTTGACTTTGAAG
EV552505       <-- TGGTTTGCTTCCATTGTCAGAGATTTGGATTCAGATACTTGACTTTGAAG
FD540941       <-- TGGTTTGCTTCCATTGTCAGAGATTTGGATTCAGATACTTGACTTTGAAG
FD559608       <-- TGGTTTGCTTCCATTGTCAGAGATTTGGATTCAGATACTTGACTTTGAAG
EY932206       <-- TGGTTTGCTTCCATTGTCAGAGATTTGGATTCAGATACTTGACTTTGAAG
EX770050       <-- TGGTTTGCTTCCATTGTCAGAGATTTGGATTCAGATACTTGACTTTGAAG
FD540598       <-- TGGTTTGCTTCCATTGTCAGAGATTTGGATTCAGATACTCGACTTTGAAG
EY930352       <-- TGGTTTGCTTCCATTGTCAGAGATTTGGATTCAGATACTTGACTTTGAAG
EV547412       --> TGGTTTGCTTCCATTGTCAGAGATTTGGATTCAGATACTTGACTTTGAAG
FD537062       --> TGGTTTGC..........................................
FD537341       --> TGGTTTGCTTCCATTGTCAGAGATTTGGATTCAGATACTTGACTTTGAAG
EY926577       --> ..................................................
EX774306       --> ..................................................
EY927984       --> ..................................................

               801    -    851
UN16887        --> TCTGGAAATCTACAGAGGTAAGAGAGAGAGTGAGAAAAAGAAAGAAAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569698       <-- TCTGGAAATCTACAGAGGTAAGAGAGAGAGTGAG................
EV552505       <-- TCTGGAAATCTACAGAGGTAAGAGAGAGAGTGAGAAAAAGAAAGAAAGAA
FD540941       <-- TCTGGAAATCTACAGAGGTAAGAGAGCGAGTGAGAAAA-GAAAGAAAGAA
FD559608       <-- TCTGGAAATCTACAGAGGTAAGAGAGAGAGTGAGAAAAA...........
EY932206       <-- TCTGGAAATCTACAGAGGTAAGAGAGAGAGTGAGAAAAAGAAAGAAAGAA
EX770050       <-- TCTGGAAATCTACAGAGGTAAGAGAGAGAGTGAGAAAAAGAAAGAAAGAA
FD540598       <-- TCTGGAAATCTACAGAGGTAAGAGAGAGAGGGAGAgagtgagaaaaa...
EY930352       <-- TCTGGAAATCTACAGAGGTAAGAGAGAGAGTGAGAAAAAGAAAGAAAGAA
EV547412       --> TCTGGAAATCTACAGAGGTAAGAGAGAGAGTGAGAAAAAGAAAGAAAGAA
FD537062       --> ..................................................
FD537341       --> TCTGGAAATCTACAGAGGTAAGAGAGCGAGTGAGAAAA-GAAAGAA....
EY926577       --> ..................................................
EX774306       --> ..................................................
EY927984       --> ..................................................

               851    -    901
UN16887        --> AGAAGAGGCGCATTGAGAGGAGGAGTGTTCTTCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569698       <-- ...................................
EV552505       <-- AGAAGAGGCGCATTGAGAGGAGGAGTGTTCTTCCC
FD540941       <-- AGAAGAGGCc.........................
FD559608       <-- ...................................
EY932206       <-- AGAAGAGGCGCATTGAGAGGAGGAGTGTTCTTCCC
EX770050       <-- AGAAGAGGCGCATTGAGAGGAGGAGT.........
FD540598       <-- ...................................
EY930352       <-- AGAAGAGGCGCATTGAGAGGAGGAGTGTTCTc...
EV547412       --> AGAAGAGGCGCATTGAGAGGAGGAGTGTTCTTCC.
FD537062       --> ...................................
FD537341       --> ...................................
EY926577       --> ...................................
EX774306       --> ...................................
EY927984       --> ...................................