Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN16895

               -1     -     49
UN16895        --> ..ATGTGTGTCTCATCGTTAAAATAACAACATCGAGGGGAGTGCTGATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529449       <-- ..................................................
FD960173       <-- ..................................................
EX775211       <-- ..................................................
FD565133       <-- ..................................................
EY911241       <-- ..................................................
FD969518       <-- ..................................................
EX775724       <-- ..................................................
EX771111       --> ggATGTGTGTCTCATCGTTAAAATAACAACATCGAGGGGAGTGCTGATTT
EX765180       --> ..................................................
EY915383       --> ..................................................
FY450646       --> ..................................................
FY447912       --> ..................................................
EV524458       --> ..................................................
FY446563       --> ..................................................
FY450248       --> ..................................................
FY451670       --> ..................................................
FD973938       --> ..................................................
EV567449       --> ..................................................

               49     -     99
UN16895        --> CGTTTTAGAAAGATTCTGAGATCTCTCTCTCTCTC--CCACACGCCTAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529449       <-- ..................................................
FD960173       <-- ..................................................
EX775211       <-- ..................................................
FD565133       <-- ..................................................
EY911241       <-- ..................................................
FD969518       <-- ..................................................
EX775724       <-- ..................................................
EX771111       --> CGTTTTAGAAAGATTCTGA-ATCTCTCTCTCTCTC--CCACACGCCTAGG
EX765180       --> ....ggAGAAAGATTCTGAGATCTCTCTCTCTCTCTCCCACACGCCTAGG
EY915383       --> ....ggAGAAAGATTCTGAGATCTCTCTCTCTCTC--CCACACGCCTAGG
FY450646       --> ......AGAAAGAT-CTGAGATCTCTCTCTCTCTC--CCACACGCCTAGG
FY447912       --> ...........GATTCTGAGATCTCTCTCTCTCTC--CCACACGCCTAGG
EV524458       --> ......................CTCTCTCTCTCTC--CCACACGCCTAGG
FY446563       --> ......................CTCTCTCTCTCTC--CCA-ACGCCTAGG
FY450248       --> ..................................................
FY451670       --> ..................................................
FD973938       --> ..................................................
EV567449       --> ..................................................

               99     -    149
UN16895        --> TTGCAATTTTTGTTACTGGTTTTGAGTGAAGAAGAAGAAGGATCATCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529449       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD960173       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX775211       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD565133       <-- ..................................................  Raphanus sativus var. oleiformis
EY911241       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD969518       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX775724       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX771111       --> TTGCAATTTTTGTTACTGCTTTGGAGTGAAGAAGAAG---GATCATCAAA  Raphanus raphanistrum subsp. landra
EX765180       --> TTGCAATTTTTGTTACTGCTTTGGAGTGAAGAAGAAG---GATCATCAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY915383       --> TTGCAATTTTTGTTACTGCTTTGGAGTGAAGAAGAAG---GATCATCAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY450646       --> TTGCAATTTT-GTTACTGGTTTTGAGTGAAGAAGAAGAAGGATCATCAAG  Raphanus sativus cv GSK3-1
FY447912       --> TTGCAATTTT-GTTACTGGTTTTGAGTGAAGAAGAAGAAGGATCATCAAG  Raphanus sativus cv GSK3-1
EV524458       --> TTGCAATTTTTGTTACTGCTTTGGAGTGAAGAAGAAG---GATCATCAA-  Raphanus raphanistrum subsp. maritimus
FY446563       --> TTGCAATTTT-GTTACTGGTTTTGAGTGAAGAAGAAGAAGGATCATCAAG  Raphanus sativus cv GSK3-1
FY450248       --> ..GCAATTTT-GTTACTGGTTTTGAGTGAAGAAGAAGAAGGATCATCAAG  Raphanus sativus cv GSK3-1
FY451670       --> ...........GTTACTGGTTTTGAGTGAAGAAGAAGAAGGATCATCAAG  Raphanus sativus cv GSK3-1
FD973938       --> .................ggggctttagagtGAAGAAGAAGGATCATCAA-  Raphanus raphanistrum subsp. raphanistrum (MS)
EV567449       --> ..................................................  Raphanus raphanistrum subsp. landra

               149    -    199
UN16895        --> AAAATGGAGAGCGACTCAGTGATGGTAGCGTTGCCTCTGTTACCGATACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529449       <-- ..................................................
FD960173       <-- ..................................................
EX775211       <-- ..................................................
FD565133       <-- ..................................................
EY911241       <-- ..................................................
FD969518       <-- ..................................................
EX775724       <-- ..................................................
EX771111       --> AAAATGGAGAGCGACTCAGTGATGGTAGCGTTGCCTCTGTTACCGATACC
EX765180       --> AAAATGGAGAGCGACTCAGTGATGGTAGCGTTGCCTCTGTTACCGATACC
EY915383       --> AAAATGGAGAGCGACTCAGTGATGGTAGCGTTGCCTCTGTTACCGATACC
FY450646       --> AAAATGGAGAGCGACTCAGTGATGGTAGCGTTGCCTCTGTTACCGATACC
FY447912       --> AAAATGGAGAGCGACTCAGTGATGGTAGCGTTGCCTCTGTTACCGATACC
EV524458       --> AAAATGGAGAGCGACTCAGTGATGGTAGCGTTGCCTCTGTTACCGATACC
FY446563       --> AAAATGGAGAGCGACTCAGTGATGGTAGCGTTGCCTCTGTTACCGATACC
FY450248       --> AAAATGGAGAGCGACTCAGTGATGGTAGCGTTGCCTCTGTTACCGATACC
FY451670       --> AAAATGGAGAGCGACTCAGTGATGGTAGCGTTGCCTCTGTTACCGATACC
FD973938       --> AAAATGGAGAGCGACTCAGTGATGGTACCGTTGCCTCTGTTACCTATACC
EV567449       --> ..................................................

               199    -    249
UN16895        --> GATAGAATCAAACTACAGAGCGTGCACCATTCCTTATCGATTCCCTTCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529449       <-- ..................................................
FD960173       <-- ..................................................
EX775211       <-- ..................................................
FD565133       <-- ..................................................
EY911241       <-- ..................................................
FD969518       <-- ..................................................
EX775724       <-- ..................................................
EX771111       --> GATAGAATCAAACTACAGAGCGTGCACCATTCCTTACCGATTCCCTTCTG
EX765180       --> GATAGGATCAAACTACAGAGCGTGCACCATTCCTTATCGATTCCCTTCTG
EY915383       --> GATAGAATCAAACTACAGAGCGTGCACCATTCCTTATCGATTCCCTCCTG
FY450646       --> GATAGAATCAAACTACAGAGCGTGCACCATTCCTTATCGATTCCCTTCTG
FY447912       --> GATAGAATCAAACTACAGAGCGTGCACCATTCCTTATCGATTCCCTTCTG
EV524458       --> GATAGAATCAAACTACAGAGCGTGCACCATTCCTTATCGATTCCCTTCTG
FY446563       --> GATAGAATCAAACTACAGAGCGTGCACCATTCCTTATCGATTCCCTTCTG
FY450248       --> GATAGAATCAAACTACAGAGCGTGCACCATTCCTTATCGATTCCCTTCTG
FY451670       --> GATAGAATCAAACTACAGAGCGTGCACCATTCCTTATCGATTCCCTTCTG
FD973938       --> GATAGAATCAAACTACAGAGCGTGCACCATTCCTTATCGATTCCCTTCTG
EV567449       --> ..................................................

               249    -    299
UN16895        --> ATAACCCCAAGAAGGCTACCCCCACTGAGATCTCTTGGATCGATCTCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529449       <-- ..................................................
FD960173       <-- ..................................................
EX775211       <-- ..................................................
FD565133       <-- ..................................................
EY911241       <-- ..................................................
FD969518       <-- ..................................................
EX775724       <-- ..................................................
EX771111       --> ATAACCCCAAGAAGGCTACCCCCACTGAGATCTCTTGGATCGATCTCTTC
EX765180       --> ATAACCCCAAGAAGGCTACCCCCACTGAGATCTCTTGGATCGATCTCTTC
EY915383       --> ATAACCCCAAGAAGGCTACCCCCACTGAGATCTCTTGGATCGATCTCTTC
FY450646       --> ATAACCCCAAGAAGGCTACCCCCACTGAGATCTCTTGGATCGATCTCTTC
FY447912       --> ATAACCCCAAGAAGGCTACCCCCACTGAGATCTCTTGGATCGATCTCTTC
EV524458       --> ATAACCCCAAGAAGGCTACCCCCACTGAGATCTCTTGGATCGATCTCTTC
FY446563       --> ATAACCCCAAGAAGGCTACCCCCACTGAGATCTCTTGGATCGATCTCTTC
FY450248       --> ATAACCCCAAGAAGGCTACCCCCACTGAGATCTCTTGGATCGATCTCTTC
FY451670       --> ATAACCCCAAGAAGGCTACCCCCACTGAGATCTCTTGGATCGATCTCTTC
FD973938       --> ATAACCCCAAGAAGGCTACTCCCACTGAGATCTCTTGGATCGATCTCTTC
EV567449       --> ..................................................

               299    -    349
UN16895        --> CTCAACTCCATCCCTTCTTTCAAGGAGCGTGCAGAGAGCGATACATCTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529449       <-- ..................................................
FD960173       <-- ..................................................
EX775211       <-- ..................................................
FD565133       <-- ..................................................
EY911241       <-- ..................................................
FD969518       <-- ..................................................
EX775724       <-- ..................................................
EX771111       --> CTCAACTCCATCCCTTCTTTCAAGGAGCGTGCAGAGAGCGATGCATCTGT
EX765180       --> CTCAACTCCATCCCTTCTTTCAAGGAGCGTGCAGAGAGCGATACATCTGT
EY915383       --> CTCAACTCCATCCCTTCTTTCAAGGAGCGTGCAGAGAGCGATACATCTGT
FY450646       --> CTCAACTCCATCCCTTCTTTCAAGGAGCGTGCAGAGAGCGATACATCTGT
FY447912       --> CTCAACTCCATCCCTTCTTTCAAGGAGCGTGCAGAGAGCGATACATCTGT
EV524458       --> CTCAACTCCATCCCTTCTTTCAAGGAGCGTGCAGAGAGCGATACATCTGT
FY446563       --> CTCAACTCCATCCCTTCTTTCAAGGAGCGTGCAGAGAGCGATACATCTGT
FY450248       --> CTCAACTCCATCCCTTCTTTCAAGGAGCGTGCAGAGAGCGATACATCTGT
FY451670       --> CTCAACTCCATCCCTTCTTTCAAGGAGCGTGCAGAGAGCGATACATCTGT
FD973938       --> CTCAACTCCATCCCTTCTTTCAAGGAGCGTGCAGAGAGCGATACATCTGT
EV567449       --> ..................................................

               349    -    399
UN16895        --> TCCAGATGCTCCTGTTCGAGCTGAAAAGTTTGCTCAAAGGTATGCGGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529449       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD960173       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX775211       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD565133       <-- ..................................................  Raphanus sativus var. oleiformis
EY911241       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD969518       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX775724       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX771111       --> TCCAGATGCTCCTGTTCGAGCTGAAAAGTTTGCTCAAAGGTATGCGGAGA  Raphanus raphanistrum subsp. landra
EX765180       --> TCCAGATGCTCCTGTTCGAGCTGAAAAGTTTGCTCAAAGGTATGCGGAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY915383       --> TCCAGATGCTCCTGTTCGAGCTGAAAAGTTTGCTCAAAGGTATGCGGAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY450646       --> TCCAGATGCTCCTGTTCGAGCTGAAAAGTTTGCACAAAGGTATGCGGAGA  Raphanus sativus cv GSK3-1
FY447912       --> TCCAGATGCTCCTGTTCGAGCTGAAAAGTTTGCACAAAGGTATGCGGAGA  Raphanus sativus cv GSK3-1
EV524458       --> TCCAGATGCTCCTGTTCGAGCTGAAAAGTTTGCTCAAAGGTATGCGGAGA  Raphanus raphanistrum subsp. maritimus
FY446563       --> TCCAGATGCTCCTGTTCGAGCTGAAAAGTTTGCACAAAGGTATGCGGAGA  Raphanus sativus cv GSK3-1
FY450248       --> TCCAGATGCTCCTGTTCGAGCTGAAAAGTTTGCACAAAGGTATGCGGAGA  Raphanus sativus cv GSK3-1
FY451670       --> TCCAGATGCTCCTGTTCGAGCTGAAAAGTTTGCACAAAGGTATGCGGAGA  Raphanus sativus cv GSK3-1
FD973938       --> TCCAGATGCTCCTGTTCGAGCTGAAAAGTTTGCTCAAAGGTATGCGGAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV567449       --> ..................................................  Raphanus raphanistrum subsp. landra

               399    -    449
UN16895        --> TTCTTGAGGACTTGAAGAAAGATCCGGAGAGCCATGGTGGACCACCAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529449       <-- ..................................................
FD960173       <-- ..................................................
EX775211       <-- ..................................................
FD565133       <-- ..................................................
EY911241       <-- ..................................................
FD969518       <-- ..................................................
EX775724       <-- ..................................................
EX771111       --> TTCT-GAGGACTTGAAGAAAGATCCGGAGAGCCATGGTGGACCACCAGAT
EX765180       --> TTCTTGAGTACTTGAAGAAAGATCCGGAGAGCCATGGTGGACCACCAGAT
EY915383       --> TTCTTGAGGACTTGAAGAAAGATCCGGAGAGCCATGGTGGACCACCAGAT
FY450646       --> TTCTTGAGGACTTGAAGAAAGATCCGGAGAGCCATGGTGGACCACCAGAT
FY447912       --> TTCTTGAGGACTTGAAGAAAGATCCGGAGAGCCATGGTGGACCACCAGAT
EV524458       --> TTCTTGAGGACTTGAAGAAAGATCCGGAGAGCCATGGTGGACCACCAGAT
FY446563       --> TTCTTGAGGACTTGAAGAAAGATCCGGAGAGCCATGGTGGACCACCAGAT
FY450248       --> TTCTTGAGGACTTGAAGAAAGATCCGGAGAGCCATGGTGGACCACCAGAT
FY451670       --> TTCTTGAGGACTTGAAGAAAGATCCGGAGAGCCATGGTGGACCACCAGAT
FD973938       --> TTCTGGAGGACTTGAAGAAAGATCCGGAGAGCCATGGTGGACCACCAGAT
EV567449       --> ..................................................

               449    -    499
UN16895        --> TGCATTCTTCTTTGTAGAATTCGTGAGCTAATACTCAGAGAATTGGGATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529449       <-- ..................................................
FD960173       <-- ..................................................
EX775211       <-- ..................................................
FD565133       <-- ..................................................
EY911241       <-- ..................................................
FD969518       <-- ..................................................
EX775724       <-- ..................................................
EX771111       --> TGCATTCTTCTTTGTAGAATTCGTGAGCTAATACTCAGAGAATTGGGATT
EX765180       --> TGCATTCTTCTTTGTAGAATTCGTGAGCTAATACTCAGAGAATTGGGATT
EY915383       --> TGCATTCTTCTTTGTAGAATTCGTGAGCTAATACTCAGAGAATTGGGATT
FY450646       --> TGCATTCTTCTTTGTAGAATTCGTGAGCTAATACTCAGAGAATTGGGATT
FY447912       --> TGCATTCTTCTTTGTAGAATTCGTGAGCTAATACTCAGAGAATTGGGATT
EV524458       --> TGCATTCTTCTTTGTAGAATTCGTGAGCTAATACTCAGAGAATTGGGATT
FY446563       --> TGCATTCTTCTTTGTAGAATTCGTGAGCTAATACTCAGAGAATTGGGATT
FY450248       --> TGCATTCTTCTTTGTAGAATTCGTGAGCTAATACTCAGAGAATTGGGATT
FY451670       --> TGCATTCTTCTTTGTAGAATTCGTGAGCTAATACTCAGAGAATTGGGATT
FD973938       --> TGCATTCTTCTTTGTAGAATTCGTGAACTAATACTCAGAGAATTGGGATT
EV567449       --> .................................................g

               499    -    549
UN16895        --> CAGAGACATTTTCAAGAAAGTTAAGGATGAGGAGAATGCAAAGGCTATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529449       <-- ..................................................
FD960173       <-- ..................................................
EX775211       <-- ..................................................
FD565133       <-- ..................................................
EY911241       <-- ..................................................
FD969518       <-- ..................................................
EX775724       <-- ..................................................
EX771111       --> CAGAGACATTTTCAAGAAAGTTAAGGATGAGGAGAATGCAAAGGCTATAT
EX765180       --> CAGAGACATTTTCAAGAAAGTTAAGGATGAGGAGAATGCAAAGGCTATAT
EY915383       --> CAGAGACATTTTCAAGAAAGTTAAGGATGAGGAGAATGCAAAGGCTATAT
FY450646       --> CAGAGACATTTTCAAGAAAGTTAAGGATGAGGAGAATGCAAAGGCTATAT
FY447912       --> CAGAGACATTTTCAAGAAAGTTAAGGATGAGGAGAATGCAAAGGCTATAT
EV524458       --> CAGAGACATTTTCAAGAAAGTTAAGGATGAGGAGAATGCAAAGGCTATAT
FY446563       --> CAGAGACATTTTCAAGAAAGTTAAGGATGAGGAGAATGCAAAGGCTATAT
FY450248       --> CAGAGACATTTTCAAGAAAGTTAAGGATGAGGAGAATGCAAAGGCTATAT
FY451670       --> CAGAGACATTTTCAAGAAAGTTAAGGATGAGGAGAATGCAAAGGCTATAT
FD973938       --> CAGAGACATTTTCAAGAAAGTTAAGGATGAGGAGAATGCAAAGGCTATAT
EV567449       --> CAGAGACATTTTCAAGAAAGTTAAGGAT-AGGAGAATGCAAAGGCTATAT

               549    -    599
UN16895        --> CACTATTTCCTGAAGTCGTCCGTCTGAGTGATGCTATTGAAGATGAAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529449       <-- ..................................................
FD960173       <-- ..................................................
EX775211       <-- ..................................................
FD565133       <-- ..................................................
EY911241       <-- ..................................................
FD969518       <-- ..................................................
EX775724       <-- ..................................................
EX771111       --> CACTATTTCCTGAAGTCGTCCGTCTGAGTGATGCTATTGAAGATGAAGGA
EX765180       --> CACTATTTCCTGAAGTCGTCCGTCTGAGTGATGCTATTGAAGATGAAGGA
EY915383       --> CACTATTTCCTGAAGTCGTCCGTCTGAGTGATGCTATTGAAGATGAGGGA
FY450646       --> CACTATTTCCTGAAGTCGTCCGTCTGAGTGATGCTATTGAAGATGAAGGA
FY447912       --> CACTATTTCCTGAAGTCGTCCGTCTGAGTGATGCTATTGAAGATGAAGGA
EV524458       --> CACTATTTCCTGAAGTCGTCCGTCTGAGTGATGCTATTGAAGATGAAGGA
FY446563       --> CACTATTTCCTG......................................
FY450248       --> CACTATTTCCTGAAGTCGTCCGTCTGAGTGATGCTATTGAAGATGAAGGA
FY451670       --> CACTATTTCCTGAAGTCGTCCGTCTGAGTGATGCTATTGAAGATGAAGGA
FD973938       --> CACTATTTCCTGAAGTCGTCCGTCTTAGTGATGCTATTGAAGATGAAGGC
EV567449       --> CACTATTTCCTGAAGTCGTCCGTCTGAGTGATGCTATTGAAGATGAAGGA

               599    -    649
UN16895        --> AAGCGCATTGAGAATCTTGTAAGAGGCATCTTCGCTGGAAACATCTTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529449       <-- ............................................CTTTGA
FD960173       <-- .......................................gaaacaTTTGA
EX775211       <-- ..................................................
FD565133       <-- ..................................................
EY911241       <-- ..................................................
FD969518       <-- ..................................................
EX775724       <-- ..................................................
EX771111       --> AAGCGCATTGAGAATCTTGTAAGAGGCATCTTCGCTGGAA-CATCTTTGA
EX765180       --> AAGCGCATTGAGAATCTTGTAAGAGGCATCTTCGCTGGAAACATCTTTGA
EY915383       --> AAGCGCATTGAGAATCTTGTAAGAGGCATCTTCGCTGGAAACATCTTTGA
FY450646       --> AAGCGCATTGAGAATCTTGTAAGAGGCATCTTCGCTGGAAACATCTTTGA
FY447912       --> AAGCGCATTGAGAATCTTGTAAGAGGCATCTTCGCTGGAAACATCTTTGA
EV524458       --> AAGCGCATTGAGAATCTTGTAAGAGGCATCTTCGCTGGAAACATCTTTGA
FY446563       --> ..................................................
FY450248       --> AAGCGCATTGAGAATCTTGTAAGAGGCATCTTCGCTGGAAACATCTTTGA
FY451670       --> AAGCGCATTGAGAATCTTGTAAGAGGCATCTTCGCTGGAAACATCTTTGA
FD973938       --> AAGCGCATTGAGAGTCTTGTAAGAGGTATTTTCGCTGGAAACATCTTTGA
EV567449       --> AAGCGCATTGAGAATCTTGTAAGAGGCATCTTCGCTGGAAACATCTTTGA

               649    -    699
UN16895        --> TCTCGGTTCTGCACAGCTTGCGGAGGTATTCTCAAAGGATGGAATGTCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529449       <-- TCTCGGTTCTGCACAGCTTGCGGAGGTATTCTCAAAGGATGGAATGTCAT
FD960173       <-- TCTCGGTTCTGCACAGCTTGCGGAGGTATTCTCAAAGGATGGAATGTCAT
EX775211       <-- ...CGGTTCTGCACAGCTTGCGGAGGTATTCTCAAAGGATGGAATGTCAT
FD565133       <-- ...........CACAGCTTGCGGAGGTATTCTCAAAGGATGGAATGCCAT
EY911241       <-- ..................................................
FD969518       <-- ..................................................
EX775724       <-- ..................................................
EX771111       --> TCTCGGT-CTGCACAGCTTGCGGAGGTAT-CTCAAAGGATGGAATGT...
EX765180       --> TCTCGGTTCTGCACAGCTTGCGGAGGTATTCTCAAAGGATGGAATGTCAT
EY915383       --> TCTCGGTTCTGCACAGCTTGCGGAGGTATTCTCAAAGGATGGAATGTCAT
FY450646       --> TCTCGGTTCTGCACAGCTTGCGGAGGTATTCTCAAAGGATGGAATGTCAT
FY447912       --> TCTCGGTTCTGCACAGCTTGCGGAGGTATTCTCAAAGGATGGAATGTCAT
EV524458       --> TCTCGGTTCTGCACAGCTTGCGGAGGTATTCTCAAAGGATGGAATGTCAT
FY446563       --> ..................................................
FY450248       --> TCTCGGTTCTGCACAGCTTGCGGAGGTATTCTCAAAGGATGGAATGTCAT
FY451670       --> TCTCGGTTCTGCACAGCTTGCGGAGGTATTCTCAAAGGATGGAATGTCAT
FD973938       --> TCTCGGTTCTGCACAGCTTGCGGAAGTATTCTCAAAGGATGGAATGTCAT
EV567449       --> TCTCGGTTCTGCACAGCTTGCGGAGGTATTCTCAAAGGATGGAATGTCAT

               699    -    749
UN16895        --> TCTTGGCTAGCTGTCAAAACTTGGTTCCACGGCCATGGGTCATTGATGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529449       <-- TCTTGGCTAGCTGCCAAAACTTGGTTCCACGGCCATGGGTCATTGATGAC
FD960173       <-- TCTTGGCTAGCTGTCAAAACTTGGTTCCACGGCCATGGGTCATTGATGAC
EX775211       <-- TCTTGGCTAGCTGTCAAAACTTGGTTCCACGGCCATGGGTCATTGATGAC
FD565133       <-- TCTTGGCTAGCTGTCAAAACTTGGTTCCACGGCCATGGGTCATTGATGAC
EY911241       <-- ..TTGGCTAGCTGTCAAAACTTGGTTCCACGGCCATGGGTCATTGATGAC
FD969518       <-- ..........................CCACGGCCATGGGTCATTGATGAC
EX775724       <-- ..................................................
EX771111       --> ..................................................
EX765180       --> TCTTGGCTAGCTGTCAAAACTTGGTTCCACGGCCATGGGTCATTGATGAC
EY915383       --> TCTTGGCTAGCTG.....................................
FY450646       --> TCTTGGCTAGCTGTCAAAACTTGGTTCCACGGCCATGGGTCATTGATGAC
FY447912       --> TCTTGGCTAGCTGTCAAAACTTGGTTCCACGGCCATGGGTCATTGATGAC
EV524458       --> TCTTGGCTAGCTGCCAAAACTTGGTTCCACGGCCATGGGTCATTGATGAC
FY446563       --> ..................................................
FY450248       --> TCTTGGCTAGCTGTCAAAACTTGGTTCCACGGCCATGGGTCATTGATGAC
FY451670       --> TCTTGGCTAGCTGTCAAAACTTGGTTCCACGGCCATGGGTCATTGATGAC
FD973938       --> TCTTGGCTAGCTGTCAAAACTTGGTTCCACGGCCATGGGTCATTGATGAC
EV567449       --> TCTTGGCTAGCTGTCAAAACTTGGTTCCACGGCCATGGGTCATTGATGAC

               749    -    799
UN16895        --> TTGGACAACTTTCAAGCTAGATGGCTCAAGAAGCCTTGGAAGAAGGCTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529449       <-- TTGGAAAACTTTCAAGCTAGATGGCTCAAGAAGCCTTGGAAGAAGGCTGT  Raphanus raphanistrum subsp. maritimus
FD960173       <-- TTGGAAAACTTTCAAGCTAGATGGCTCAAGAAGCCTTGGAAGAAGGCTGT  Raphanus raphanistrum subsp. maritimus
EX775211       <-- TTGGAAAACTTTCAAGCTAGATGGCTCAAGAAGCCTTGGAAGAAGGCTGT  Raphanus raphanistrum subsp. landra
FD565133       <-- TTGGACAACTTTCAAGCTAGATGGCTCAAGAAGTCTTGGAAGAAGGCTGT  Raphanus sativus var. oleiformis
EY911241       <-- TTGGAAAACTTTCAAGCTAGATGGCTCAAGAAGCCTTGGAAGAAGGCTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD969518       <-- TTGGACAACTTTCAAGCTAGATGGCTCAAGAAGCCTTGGAAGAAGGCTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX775724       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX771111       --> ..................................................  Raphanus raphanistrum subsp. landra
EX765180       --> TTGGA--ACTTTCAAGCTAGATGGCTCA-GAAGCCTTGGAAGA-CGCTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY915383       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY450646       --> TTGGACAACTTTCAAGCTAGATGGCTCAAGAAGACTTGGAAGAAGGC...  Raphanus sativus cv GSK3-1
FY447912       --> TTGGACAACTTTCAAGCTAGATGGCTCAAGAAGACTTGGAAGAAGGCTGT  Raphanus sativus cv GSK3-1
EV524458       --> TTGGAAAACTTTCAAGCTAGATGGCTCAAGAAGCCTTGGAA.........  Raphanus raphanistrum subsp. maritimus
FY446563       --> ..................................................  Raphanus sativus cv GSK3-1
FY450248       --> TTGGACAACTTTCAAGCTAGATGGCTCAAGAAGACTTGGAAGAAGGCTGT  Raphanus sativus cv GSK3-1
FY451670       --> TTGGACAACTTTCAAGCTAGATGGCTCAAGAAGACTTGGAAGAAGGCTGT  Raphanus sativus cv GSK3-1
FD973938       --> TTGGACAACTTTCAAGCTAGATGGCTCAAGAAGCCTTGGAAGA-CGCTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV567449       --> TTGGAAAACTTTCAAGCCAGATGGCTCAAGAAGCCTTGGAAGAAGGCTGT  Raphanus raphanistrum subsp. landra

               799    -    849
UN16895        --> GATATTTGTTGACAACTCTGGTGCAGACATAATTTTGGGTATCTTGCCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529449       <-- GATATTTGTTGACAACTCTGGTGCAGACATAATTTTGGGTATCTTGCCGT
FD960173       <-- GATATTTGTTGACAACTCTGGTGCAGACATAATTTTGGGTATCTTGCCGT
EX775211       <-- GATATTTGTTGACAACTCTGGTGCAGACATAATTTTGGGTATCTTGCCGT
FD565133       <-- GATATTTGTCGACAACTCTGGTGCAGACATAATTTTGGGTATCTTGCCGT
EY911241       <-- GATATTTGTTGACAACTCTGGTGCAGACATAATTTTGGGTATCTTGCCGT
FD969518       <-- GATATTTGTTGACAACTCTGGTGCAGACATAATTTTGGGTATCTTGCCGT
EX775724       <-- ..................................................
EX771111       --> ..................................................
EX765180       --> GATATTTGTTGACA-CTCTGGTGCAGACATA-TTTTGGGTATCTTGCCGT
EY915383       --> ..................................................
FY450646       --> ..................................................
FY447912       --> TATATTTGTTGACAACTCTGGTGCAGACATAATTTTGGGTATCTTGCCGT
EV524458       --> ..................................................
FY446563       --> ..................................................
FY450248       --> TATATTTGTTGACAACTCTGGTGCAGACATAATTTTGGGTATCTTGCCGT
FY451670       --> TATATTTGTTGACAACTCTGGTGCAGACATAATTTTGGGTATCTTGCCGT
FD973938       --> GATATTTGTTGACA-CTCTGGTGCAGACATAATTTTGGGTATCTTGCCGT
EV567449       --> GATATTTGTTGACAACTCTGGTGCAGACATAATTTTGGGTATCTTGCCGT

               849    -    899
UN16895        --> TTGCTAGAGAAATGCTACGTCAAGGAATGCAGGTGGTGCTGGCTGCTAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529449       <-- TTGCTAGAGAAATGTTACGTCAAGGAATGCAGGTGGTGCTGGCTGCTAAT
FD960173       <-- TTGCTAGAGAAATGCTACGTCAAGGAATGCAGGTGGTGCTGGCTGCTAAT
EX775211       <-- TTGCTAGAGAAATGCTACGTCAAGGAATGCAGGTGGTGCTGGCTGCTAAT
FD565133       <-- TTGCTAGAGAAATGCTACGTCAAGGAATGCAGGTGGTGCTGGCTGCTAAT
EY911241       <-- TTGCTAGAGAAATGCTACGTCAAGGAATGCAGGTGGTGCTGGCTGCTAAT
FD969518       <-- TTGCTAGAGAAATGCTACGTCAAGGAATGCAGGTGGTGCTGGCTGCTAAT
EX775724       <-- .........................AATGCAGGTGGTGCTGGCTGCTAAT
EX771111       --> ..................................................
EX765180       --> TTG...............................................
EY915383       --> ..................................................
FY450646       --> ..................................................
FY447912       --> TTGCTAGAGAAATGCTACGTCAgg..........................
EV524458       --> ..................................................
FY446563       --> ..................................................
FY450248       --> TTGCTAGAGAAATGCTACGTCAAGGAATGCAGGTGGTGCTGGCTGCTAAT
FY451670       --> TTGCTAGAGAAATGCTACGTCAAGGAATGCAGGTGGTGCTGGCTGCTAAT
FD973938       --> TTGCTAGAGAAATGCTACGTCAgg..........................
EV567449       --> TTGCTGGAGAAATGCTACGTCAAGGAATGCAGGTGGTGCTGGCTGCTAAT

               899    -    949
UN16895        --> GAGCTTCCATCTATCAATGATGTCACTTATACCGAGCTTGCAGAGATCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529449       <-- GAGCTTCCATCTATCAATGATGTCACTTATACCGAGCTTGCAGAGATCTT
FD960173       <-- GAGCTTCCATCTATCAATGATGTCACTTATACCGAGCTTGCAGAGATCTT
EX775211       <-- GAGCTTCCATCTATCAATGATGTCACTTATACCGAGCTTGCAGAGATCTT
FD565133       <-- GAGCTTCCATCTATCAATGATGTCACTTATACAGAGCTTGCAGAGATCTT
EY911241       <-- GAGCTTCCATCTATCAATGATGTCACTTATACCGAGCTTGCAGAGATCTT
FD969518       <-- GAGCTTCCATCTATCAATGATGTCACTTATACCGAGCTTGCAGAGATCTT
EX775724       <-- GAGCTTCCATCTATCAATGATGTCACTTATACCGAGCTTGCAGAGATCTT
EX771111       --> ..................................................
EX765180       --> ..................................................
EY915383       --> ..................................................
FY450646       --> ..................................................
FY447912       --> ..................................................
EV524458       --> ..................................................
FY446563       --> ..................................................
FY450248       --> GAGCTTCCATCTAT....................................
FY451670       --> GAGCTTCCATCTATCAATGATGTCACTTATACCGAGCTTGC.........
FD973938       --> ..................................................
EV567449       --> GAGCTTCCATCTATCAATGATGTCACTTATACCGAGCTTGCAGAGATCTT

               949    -    999
UN16895        --> ATCAAAGCTTAAGGATGAAAATGGACAACTGATGGGCGTTGATATCTCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529449       <-- ATCAAAGCTTAAGGATGAAAATGGACAACTGATGGGCGTTGATATCTCGA
FD960173       <-- ATCAAAGCTTAAGGATGAAAATGGACAACTGATGGGCGTTGATATCTCGA
EX775211       <-- ATCAAAGCTTAAGGATGAAAATGGACAACTGATGGGCGTTGATATCTCGA
FD565133       <-- GTTTAAGCTTAAGGATGAAAATGGACAACTGATGGGTGTTGATATCTCGA
EY911241       <-- ATCAAAGCTTAAGGATGAAAATGGACAACTGATGGGCGTTGATATCTCGA
FD969518       <-- GTCCAAGCTTAAGGATGAAAATGGACAACTGATGGGTGTTGATATCTCGA
EX775724       <-- ATCAAAGCTTAAGGATGAAAATGGACAACTGATGGGCGTTGATATCTCGA
EX771111       --> ..................................................
EX765180       --> ..................................................
EY915383       --> ..................................................
FY450646       --> ..................................................
FY447912       --> ..................................................
EV524458       --> ..................................................
FY446563       --> ..................................................
FY450248       --> ..................................................
FY451670       --> ..................................................
FD973938       --> ..................................................
EV567449       --> ATCAAAGCTTAAGGATGAAAATGGACAACTGATGGGCGTTGATATCTCGA

               999    -   1049
UN16895        --> ATCTTCTGATTGCAAACTCTGGGAATGACTTACCGGTTATTGATCTGGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529449       <-- ATCTTCTGATTGCAAACTCTGGGAATGACTTACCGGTTATTGATCTGGCA
FD960173       <-- ATCTTCTGATTGCAAACTCTGGGAATGACTTACCGGTTATTGATCTGGCA
EX775211       <-- ATCTTCTGATTGCAAACTCTGGGAATGACTTACCGGTTATTGATCTGGCA
FD565133       <-- ATCTTCTGATTGCAAACTCTGGGAATGACTTACCGGTTATTGATCTGGCA
EY911241       <-- ATCTTCTGATTGCAAACTCTGGGAATGACTTACCGGTTATTGATCTGGCA
FD969518       <-- ATCTTCTGATTGCAAACTCTGGGAATGACCTACCGGTTATTGATCTGGCA
EX775724       <-- ATCTTCTGATTGCAAACTCTGGGAATGACTTACCGGTTATTGATCTGGCA
EX771111       --> ..................................................
EX765180       --> ..................................................
EY915383       --> ..................................................
FY450646       --> ..................................................
FY447912       --> ..................................................
EV524458       --> ..................................................
FY446563       --> ..................................................
FY450248       --> ..................................................
FY451670       --> ..................................................
FD973938       --> ..................................................
EV567449       --> ATCTTCTGATTGCAAACTCTGGGAATGACTTACCGGTTATTGATCTGGCA

               1049   -   1099
UN16895        --> AGAGTATCACAGGAGGTTGCATACCTTGCAACCGATGCAGACTTGGTCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529449       <-- AGAGTATCACAGGAGGTTGCATACCTTGCAACCGATGCAGACTTGGTCAT
FD960173       <-- AGAGTATCACAGGAGGTTGCATACCTTGCAACCGATGCAGACTTGGTCAT
EX775211       <-- GGAGTATCACAGGAGGTTGCATACCTTGCAACCGATGCAGACTTGGTCAT
FD565133       <-- AGAGTATCACAGGAGGTTGCATACCTTGCAACCGATGCAGACTTGGTCAT
EY911241       <-- AGAGTATCACAGGAGGTTGCATACCTTGCAACCGATGCAGACTTGGTCAT
FD969518       <-- AGAGTATCACAGGAGGTTGCATACCTCTCGACCGATGCAGACTTGGTCAT
EX775724       <-- AGAGTATCACAGGAGGTTGCATCCCTTGCAACCGATGCAGACTTGGTCAT
EX771111       --> ..................................................
EX765180       --> ..................................................
EY915383       --> ..................................................
FY450646       --> ..................................................
FY447912       --> ..................................................
EV524458       --> ..................................................
FY446563       --> ..................................................
FY450248       --> ..................................................
FY451670       --> ..................................................
FD973938       --> ..................................................
EV567449       --> AGAGTATCACAGGAGGTTGCATACCTTGCAACCGATGCAGACTTGGTCAT

               1099   -   1149
UN16895        --> CTTAGAAGGCATGGG-ACGTGGAATAGAGACAAACCTTTATGCTCAGTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529449       <-- CTTAGAAGGCATGGG-ACGTGGAATAGAGACAAACCTTTATGCTCAATTC
FD960173       <-- CTTAGAAGGCATGGG-ACGTGGAATAGAGACAAACCTTTATGCTCAGTTC
EX775211       <-- CTTAGAAGGCATGGG-ACGTGGAATAGAGACAAACCTTTATGCTCAGTTC
FD565133       <-- CTCTGAAGGCATGGG-ACGTGGAATAGAGACAAACCTTTATGCTCAGTTC
EY911241       <-- CCTAGAAGGCATGGG-ACGTGGAATAGAGACAAACCTTTATGCTCAGTTC
FD969518       <-- CTTAGAAGGCATGGG-ACGTGGAATAGAGACAAACCTTTATGCTCAGTTC
EX775724       <-- CTTAGAAGGCATGGG-ACGTGGAATAGAGACAAACCTTTGTGCTCAGTTC
EX771111       --> ..................................................
EX765180       --> ..................................................
EY915383       --> ..................................................
FY450646       --> ..................................................
FY447912       --> ..................................................
EV524458       --> ..................................................
FY446563       --> ..................................................
FY450248       --> ..................................................
FY451670       --> ..................................................
FD973938       --> ..................................................
EV567449       --> CTTAGAAGGCATGGGGACGTGGAATAGAGACAAACCTTTATGCTCAGTTC

               1149   -   1199
UN16895        --> AAGTGTGATTCCCTCAAGATTGGAATGGTGAAGCATCCAGAGGTAGCACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529449       <-- AAGTGTGATTCCCTCAAGATTGGAATGGTGAAGCATCCAGAGGTAGCACA
FD960173       <-- AAGTGTGATTCCCTCAAGATTGGAATGGTGAAGCATCCAGAGGTAGCACA
EX775211       <-- AAGTGTGATTCCCTCAAGATTGGAATGGTGAAGCATCCAGAGGTAGCACA
FD565133       <-- AAGTGTGATTCCCTCAAGATTGGAATGGTGAAGCATCCAGAGGTAGCACA
EY911241       <-- AAGTGTGATTCCCTCAAGATTGGAATGGTGAAGCATCCAGAGGTAGCACA
FD969518       <-- AAGTGTGATTCCCTCAAGATTGGAATGGTGAAGCATCCAGAGGTAGCACA
EX775724       <-- AAGTGTGATTCCCTCAAGATTGGAATGGTGAAGCATCCAGAGGTAGCACA
EX771111       --> ..................................................
EX765180       --> ..................................................
EY915383       --> ..................................................
FY450646       --> ..................................................
FY447912       --> ..................................................
EV524458       --> ..................................................
FY446563       --> ..................................................
FY450248       --> ..................................................
FY451670       --> ..................................................
FD973938       --> ..................................................
EV567449       --> AAGTGTGATTCCCTCAAGATTGGAATGGTGAAGCATCCAGAGGTAGCACA

               1199   -   1249
UN16895        --> GTTTCTGGGAGGACGGCTTTATGACTGCGTCATCAAATACAATGAAGTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529449       <-- GTTTCTGGGAGGACGGCTTTATGACTGCGTCATCAAATACAATGAAGTTC
FD960173       <-- GTTTCTGGGAGGACGGCTTTATGACTGCGTCATCAAATACAATGAAGTTC
EX775211       <-- GTTTCTGGGAGGACGGCTTTATGACTGCGTCATCAAATACAATGAAGTTC
FD565133       <-- GTTTCTGGGAGGACGGCTTTATGACTGCGTCATCAAATACAATGAAGTTC
EY911241       <-- GTTTCTGG-TGGACGGCTTTATGACTGCGCCATCAAATACAATGAAGTTC
FD969518       <-- GTTTCTGGGAGGACGGCTTTATGACTGCGTCATCAAATACAATGAAGTTC
EX775724       <-- GTTTCTGGGAGGACGGCTTTATGACTGCGTCATCAAATACAATGAAGTTC
EX771111       --> ..................................................
EX765180       --> ..................................................
EY915383       --> ..................................................
FY450646       --> ..................................................
FY447912       --> ..................................................
EV524458       --> ..................................................
FY446563       --> ..................................................
FY450248       --> ..................................................
FY451670       --> ..................................................
FD973938       --> ..................................................
EV567449       --> GTTTCTGGGAGGACGTCTTTATGACTGCGTCATCAAATACAATGAAGTTC

               1249   -   1299
UN16895        --> AGAGCTGATTGTATTCCCACAACCTTCATTTTTTTTACTGCACCAAGCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529449       <-- AGAGCTGATTGTATTCCCACAACCTTCATTTTTTTTACTGCACCAAGCCA
FD960173       <-- AGAGCTGATTGTATTCCCACAACCTTCATTTTTTTTACTGCACCAAGCCA
EX775211       <-- AGAGCTGATTGTATTCCCACAACCTTCATTTTTTTTACTGCACCAAGCCA
FD565133       <-- AGAGCTGATTGTATTCC-ACAACCTACATTTTTT-CACAGAACCAAGCCA
EY911241       <-- AGAGCTGATTGTATTCCCACAACCTTCATTTTTTTTACTGCACCAAGCCA
FD969518       <-- AGAGCTGATTGTATTCC-ACAACCTACATTTTTT-CACAGAACCAAGCCA
EX775724       <-- AGAGCTGATTGTATTCCCACAACCTTCATTTTTTTTACTGCACCAAGCCA
EX771111       --> ..................................................
EX765180       --> ..................................................
EY915383       --> ..................................................
FY450646       --> ..................................................
FY447912       --> ..................................................
EV524458       --> ..................................................
FY446563       --> ..................................................
FY450248       --> ..................................................
FY451670       --> ..................................................
FD973938       --> ..................................................
EV567449       --> AGAGCTGATTGTATT...................................

               1299   -   1349
UN16895        --> AACAGTTTATTATATTAAAAACTGTTAGGCTTTGTAAGTTTTAGTTTAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529449       <-- AACAGTTTATTATATTAAAAACTGTTAGGCTTTGTAAGTTTTAGTTTAAA
FD960173       <-- AACAGTTTATTATATTAAAAACTGTTAGGCTTTGTAAGTTTTAGTTTAAA
EX775211       <-- AACAGTTTATTATATTAAAAACTGTTAGGCTTTGTAAGTTTTAGTTTAAA
FD565133       <-- AACAGTTTATTATATTAAAAACTGCTAGGCTTTGTAAGTTTTAGTTTAAA
EY911241       <-- AACAGTTTATTATATTAAAAACTGTTAGGCTTTGTAAGTTTTAGTTTAAA
FD969518       <-- AACAGTTTATTATGTTAAAAACTGCTAGGCTTTGTAAGTTTTAGTTTAAA
EX775724       <-- AACAGTTTATTATATTAAAAACTGTTAGGCTTTGTAAGTTTTAGTTTAAA
EX771111       --> ..................................................
EX765180       --> ..................................................
EY915383       --> ..................................................
FY450646       --> ..................................................
FY447912       --> ..................................................
EV524458       --> ..................................................
FY446563       --> ..................................................
FY450248       --> ..................................................
FY451670       --> ..................................................
FD973938       --> ..................................................
EV567449       --> ..................................................

               1349   -   1399
UN16895        --> CTCC-CTCTACTCTCTCTCTCTCTGCACTCAGATATAAGAATTGGAAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529449       <-- CTCC-CTCTACTCTCTCTCTCTCTGCACTCAGATATAAGAATTGGAAAAC
FD960173       <-- CTCC-CTCTACTCTCTCTCTCTCTGCACTCAGATATAAGAATTGGAAAAC
EX775211       <-- CTCC-CTCTACTCTCTCTCTCTCTGCACTCAGATATAAGAATTTGAAAAC
FD565133       <-- CTCCtccctctactcgc.................................
EY911241       <-- CTCC-CTCTACTCTCTCTCTCTCTGCACTCAGATATAAGAATTGGAAAAC
FD969518       <-- CTCCTCCCTCTACTCTCTATCTCTGCACTCAGATATAAGAATTGGAAAAC
EX775724       <-- CTCC-CTCTACTCTCTCTCTCTCTGCACTCAGATATAAGAATTGGAAAAC
EX771111       --> ..................................................
EX765180       --> ..................................................
EY915383       --> ..................................................
FY450646       --> ..................................................
FY447912       --> ..................................................
EV524458       --> ..................................................
FY446563       --> ..................................................
FY450248       --> ..................................................
FY451670       --> ..................................................
FD973938       --> ..................................................
EV567449       --> ..................................................

               1399   -   1449
UN16895        --> TCTTTCAACATTCTTGATATGGTATTTGAGCATTTTAGAGGACTCCCAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529449       <-- TCTTT.............................................
FD960173       <-- TCTTTCAACATTCTTGATATGGTATTTGAGCATTTc..............
EX775211       <-- TCTTTCAACATTCTTGATATGGTATTTGAGCATTTTAGAGG.........
FD565133       <-- ..................................................
EY911241       <-- TCTTTCAACATTCTTG..................................
FD969518       <-- TCTTTCAACATTCTTGCTATGGTATTTGAGCATTTTAGAGGACTCCCAAT
EX775724       <-- TCTTTCAACAc.......................................
EX771111       --> ..................................................
EX765180       --> ..................................................
EY915383       --> ..................................................
FY450646       --> ..................................................
FY447912       --> ..................................................
EV524458       --> ..................................................
FY446563       --> ..................................................
FY450248       --> ..................................................
FY451670       --> ..................................................
FD973938       --> ..................................................
EV567449       --> ..................................................

               1449   -   1499
UN16895        --> GAAAGAAATATGAC
                   ~~~~~~~~~~~~~~
EV529449       <-- ..............
FD960173       <-- ..............
EX775211       <-- ..............
FD565133       <-- ..............
EY911241       <-- ..............
FD969518       <-- GAAAGAAATATGAC
EX775724       <-- ..............
EX771111       --> ..............
EX765180       --> ..............
EY915383       --> ..............
FY450646       --> ..............
FY447912       --> ..............
EV524458       --> ..............
FY446563       --> ..............
FY450248       --> ..............
FY451670       --> ..............
FD973938       --> ..............
EV567449       --> ..............