1      -     51
UN16913        --> CTGGAAATGGAAAGCATTTATAAATTCGGGAACATAATTTCACAAAACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569325       <-- CTGGAAATGGAAAGCATTTATAAATTCGGGAACATAATTTCACAAAACAA
FD962491       <-- ..................................................
EY912836       <-- ..................................................
EY915687       <-- ..................................................
FD964482       <-- ..................................................
EV573893       --> CTGGAAATGGAAAGCATTTATAAATTCGGGAACATAATTTCACAAAACAA
FD959037       --> ..................................................
EW721851       --> ..................................................
EY909180       --> ..................................................
EY911483       --> ..................................................

               51     -    101
UN16913        --> ACAAGGAGAAAATATGAGTATACTAAACTTTATGTTGGTTTGTGTACTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569325       <-- ACAAGGAGAAAATATGAGTATAATAAACTTTATGTTGGTTTGTGTACTCA  Raphanus raphanistrum subsp. landra
FD962491       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY912836       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY915687       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD964482       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV573893       --> ACAAGGAGAAAATATGAGTATAATAAACTTTATGTTGGTTTGTGTACTCA  Raphanus raphanistrum subsp. landra
FD959037       --> ..AAGGAGAAAATATGAGTATACTAAACTTTATGTTGGTTTGTGTACTCA  Raphanus raphanistrum subsp. maritimus
EW721851       --> .....ggGAAAATATGAGTATAATAAACTTTATGTTGGTTTGTGTACTCA  Raphanus sativus var. oleiformis
EY909180       --> ...............ggGTATACTAAACTTTATGTTGGTTTGTGTACTCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY911483       --> ...............ggGTATACTAAACTTTATGTTGGTTTGTGTACTCA  Raphanus raphanistrum subsp. raphanistrum (NY)

               101    -    151
UN16913        --> ACAAAATCATTTATTCAAACAAAGTCCAACCCAAATAAAACAAAGAGGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569325       <-- ACAAAATCATTTATTCAAACAAAGTCCAACCCAAATAAAACAAAGAGGAA
FD962491       <-- ..................................................
EY912836       <-- ..................................................
EY915687       <-- ..................................................
FD964482       <-- ..................................................
EV573893       --> ACAAAATCATTTATTCAAACAAAGTCCAACCCAAATAAAACAAAGAGGAA
FD959037       --> ACAAAATCATTTATTCAAACAAAGTCCAACCCAAATAAAACAAAGAGGAA
EW721851       --> ACAAAATCATTTATTCAAACAAAGTCCAACCCAAATAAAACAAAGAGGAA
EY909180       --> ACAAAATCATTTATTCAAACAAAGTCCAACCCAAATAAAACAAAGAGGAA
EY911483       --> ACAAAATCATTTATTCAAACAAAGTCCAACCCAAATAAAACAAAGAGGAA

               151    -    201
UN16913        --> AAGTAAGTTTCTTATTTATTCCATCCTTTGCAGTCAAGGGACTTTCACTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569325       <-- AAGTAAGTTTCTTATTTATTCCATCCTTTGCAGTTAAGGGACTTCCACTA
FD962491       <-- ..................................................
EY912836       <-- ..................................................
EY915687       <-- ..................................................
FD964482       <-- ..................................................
EV573893       --> AAGTAAGTTTCTTATTTATTCCATCCTTTGCAGTTAAGGGACTTCCACTA
FD959037       --> AAGTAAGTTTCTTATTTATTCCATCCTTTGCAGTCAAGGGACTTTCACTA
EW721851       --> AAGTAAGTTTCTTATTTATTCCATCCTTTGCAGTCAAGGGACTTTCACTA
EY909180       --> AAGTAAGTTTCTTATTTATTCCATCCTTTGCAGTCAAGGGACTTTCACTA
EY911483       --> AAGTAAGTTTCTTATTTATTCCATCCTTTGCAGTCAAGGGACTTTCACTA

               201    -    251
UN16913        --> ATCATTTGAAAAGCAAAATGATTTTCTTTTTTCTTTTACTTGGAAGAAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569325       <-- ATCATTTGAAAAGCAAAATGATTTTCTTTTT-CTTTTACTTGGAAGAAAT
FD962491       <-- .........................................GGAAGAAAT
EY912836       <-- ..................................................
EY915687       <-- ..................................................
FD964482       <-- ..................................................
EV573893       --> ATCATTTGAAAAGCAAAATGATTTTCTTTTT-CTTTTACTTGGAAGAAAT
FD959037       --> ATCATTTGAAAAGCAAAATGATTTTCTTTTTTCTTTTACTTGGAAGAAAT
EW721851       --> ATCATTTGAAAAGCAAAATGATTTTCCTTTTTCTTTTACTTGGAAGAAAT
EY909180       --> ATCATTTGAAAAGCGAAATGATTTTCTTTTTTCTTTTACTTGGAAGAAAT
EY911483       --> ATCATTTGAAAAGCGAAATGATTTTCTTTTTTCTTTTACTTGGAAGAAAT

               251    -    301
UN16913        --> AAACCTGCTCTTAGCCTGAGAGAGCTGCGTTCATAGCACTGTGAACTTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569325       <-- AAACCTTGTCTTAGCCTGAGAGAGCTGCGTTCATAGCACTGTGAACTTCA
FD962491       <-- AAAC-TGCTCTTAGC-TGAGAGAGCTGCGTTCATAGCACTGTGAACTTCA
EY912836       <-- ........TCTTAGC-TGAGAGAGCTGCGTTCATAGCACTGTGAACTTCA
EY915687       <-- ..................................................
FD964482       <-- ..................................................
EV573893       --> AAACCTTGTCTTAGCCTGAGAGAGCTGCGTTCATAGCACTGTGAACTTCA
FD959037       --> AAACCTGCTCTTAGCCTGAGAGAGCTGCGTTCATAGCACTGTGAACTTCA
EW721851       --> AAACCTGCTCTTAGCCTGAGAGAGCTGCGTTCATAGCACTGTGAACTTCA
EY909180       --> AAACCTGCTCTTAGCCTGAGAGAGCTGCGTTCATAGCACTGTGAACTTCA
EY911483       --> AAACCTGCTCTTAGCCTGAGAGAGCTGCGTTCATAGCACTGTGAACTTCA

               301    -    351
UN16913        --> ACACCAATCTGTGCTTCTGCTTTCTCAAGATCCGTTGATGCAGAAGCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569325       <-- ACACCAATCTGc......................................
FD962491       <-- ACACCAATCTGTGCTTCTGCTTTCTCAAGATCCGTTGATGCAGAAGCAAG
EY912836       <-- ACACCAATCTGTGCTTCTGCTTTCTCAAGATCCGTTGATGCAGAAGCAAG
EY915687       <-- ..................................................
FD964482       <-- ..................................................
EV573893       --> ACACCAATCTGc......................................
FD959037       --> ACACCAATCTGTGCTTCTGCTTTCTCAAGATCCGTTGATGCAGAAGCAAG
EW721851       --> ACACCAATCTGTGCTTCTGCTTTCTCAAGATCCGTTGATGCAGAAGCAAG
EY909180       --> ACACCAATCTGTGCTTCTGCTTTCTCAAGATCCGTTGATGCAGAAGCAAG
EY911483       --> ACACCAATCTGTGCTTCTGCTTTCTCAAGATCCGTTGATGCAGAAGCAAG

               351    -    401
UN16913        --> TTTCTGTGTGAACTCAGCTAAACCCTTTTGGACTTGGCTAGCGTCAATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569325       <-- ..................................................
FD962491       <-- TTTCTGTGTGAACTCAGCTAAACCCTTTTGGACTTGGCTAGCGTCAATGT
EY912836       <-- TTTCTGTGTGAACTCAGCTAAACCCTTTTGGACTTGGCTAGCGTCAATGT
EY915687       <-- ...............................ACTTGGCTAGCGTCAATGT
FD964482       <-- ...........................................TCAATGT
EV573893       --> ..................................................
FD959037       --> TTTCTGTGTGAACTCAGCTAAACCCTTTTGGACTTGGCTAGCGTCAATGT
EW721851       --> TTTCTGTGTGAACTCAGCTAAACCCTTTTGGACTTGGCTAGCGTCAATGT
EY909180       --> TTTCTGTGTGAACTCAGCTAAACCCTTTTGGACTTGGCTAGCGTCAATGT
EY911483       --> TTTCTGTGTGAACTCAGCTAAACCCTTTTGGACTTGGCTAGCGTCAATGT

               401    -    451
UN16913        --> TCTCAAGCGGCACGGCCTCAACAGCGATAATGTCAGCCACGGAATTAGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569325       <-- ..................................................
FD962491       <-- TCTCAAGCGGCACGGCCTCAACAGCGATAATGTCAGCCACGGAATTAGCG
EY912836       <-- TCTCAAGCGGCACGGCCTCAACAGCGATAATGTCAGCCACGGAATTAGCG
EY915687       <-- TCTCAAGCGGCACGGCCTCAACAGCGATAATGTCAGCCACGGAATTAGCG
FD964482       <-- TCTCAAGCGGCACGGCCTCAACAGCGATTATGTCAGCCACGGAATTAGCG
EV573893       --> ..................................................
FD959037       --> TCTCAAGCGGCACGGCCTCAACAGCGATAATGTCAGCCACGGAATTAGCG
EW721851       --> TCTCCAGCGGCACGGCCTCAACCGCGATAATGTCAGCCACGGAATTAGCG
EY909180       --> TCTCAAGCGGCACGGCCTCAACAGCGATAATGTCAGCCACGGAATTAGCG
EY911483       --> TCTCAAGCGGCACGGCCTCAACAGCGATAATGTCAGCCACGGAATTAGCG

               451    -    501
UN16913        --> TGGAGAAACGCGAAACCACTGCTCACGAAGTATTTCTTCACGTCAGTGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569325       <-- ..................................................
FD962491       <-- TGGAGAAACGCGAAACCACTGCTCACGAAGTATTTCTTCACGTCAGTGCT
EY912836       <-- TGGAGAAACGCGAAACCACTGCTCACGAAGTATTTCTTCACGTCAGTGCT
EY915687       <-- TGGAGAAACGCGAAACCACTGCTCACGAAGTATTTCTTCACGTCAGTGCT
FD964482       <-- TGGAGAAACGCGAAGCCACTGCTCACGAAGTATTTCTTCACGTCAGTGCC
EV573893       --> ..................................................
FD959037       --> TGGAGAAACGCGAAACCACTGCTCACGAAGTATTTCTTCACGTCAGTGCT
EW721851       --> TGGAGAAACGCGAAACCACTGCTCACGAAGTATTTCTTCACGTCAGTGCC
EY909180       --> TGGAGAAACGCGAAACCACTGCTCACGAAGTATTTCTTCACGTCAGTGCT
EY911483       --> TGGAGAAACGCGAAACCACTGCTCACGAAGTATTTCTTCACGTCAGTGCT

               501    -    551
UN16913        --> TTCGTGAACGGACATGATACCGGGCTTCAGCTCAGCGATTGTTGGAACGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569325       <-- ..................................................
FD962491       <-- TTCGTGAACGGACATGATACCGGGCTTCAGCTCAGCGATTGTTGGAACGT
EY912836       <-- TTCGTGAACGGACATGATACCGGGCTTCAGCTCAGCGATTGTTGGAACGT
EY915687       <-- TTCGTGAACGGACATGATACCGGGCTTCAGCTCAGCGATTGTTGGAACGT
FD964482       <-- TTCGTGAACGGACATGATACCGGGTTTCAGCTCAGCGATTGTTGGAACGT
EV573893       --> ..................................................
FD959037       --> TTCGTGAACGGACATGATACCGGGCTTCAGCTCAGCGATTGTTGGAACGT
EW721851       --> TTCGTGAACGGACATGATACCGGGTTTCAGCTCAGCGATGGTTGGAACGT
EY909180       --> TTCGTGAACGGACATGATACCGGGCTTCAGCT..................
EY911483       --> TTCGTGAACGGACATGATACCGGGCTT.......................

               551    -    601
UN16913        --> GTCCAGGCAAAACACCCATTTGTCCTGTTGTCGCTGGAATGATGACCATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569325       <-- ..................................................
FD962491       <-- GTCCAGGCAAAACACCCATTTGTCCTGTTGTCGCTGGAATGATGACCATG
EY912836       <-- GTCCAGGCAAAACACCCATTTGTCCTGTTGTCGCTGGAATGATGACCATG
EY915687       <-- GTCCAGGCAAAACACCCATTTGTCCTGTTGTCGCTGGAATGATGACCATG
FD964482       <-- GTCCAGGCAAAACACCCATTTGTCCTGTTGTCGCTGGAATGATGACCATG
EV573893       --> ..................................................
FD959037       --> GTCCAGGCAAAACACCCATTTGTCCTGTTGTCGCTGGAATGATGACCATG
EW721851       --> GTCCAGGCAAAACACCCATTTGTCCTGTTGTCGCTGGAATGATGACCATG
EY909180       --> ..................................................
EY911483       --> ..................................................

               601    -    651
UN16913        --> TCGACCTCTTTCCCGGAAAGCTCAGATGCGTAAGGGAGGACGAAATTGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569325       <-- ..................................................
FD962491       <-- TCGACCTCTTTCCCGGAAAGCTCAGATGCGTAAGGGAGGACGAAATTGAC
EY912836       <-- TCGACCTCTTTCCCGGAAAGCTCAGATGCGTAAGGGAGGACGAAATTGAC
EY915687       <-- TCGACCTCTTTCCCGGAAAGCTCAGATGCGTAAGGGAGGACGAAATTGAC
FD964482       <-- TCGACCTCTTTCCCGGAAAGCTCAGATGCGTAAGGGAGGACGAAATTGAC
EV573893       --> ..................................................
FD959037       --> TCGACCTCTTTCCCGGAAAGCTCAGATGCGTAAGGGAGGACGAAATTGAC
EW721851       --> TCGACCTCTTTCCCGGAAAGCTCAGATGCGTAAGGGAGGACGAAATTGAC
EY909180       --> ..................................................
EY911483       --> ..................................................

               651    -    701
UN16913        --> GGTGAGCTTCGTCGGAATCGAAGACGCAGTCGACGGACGAGCCTTCATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569325       <-- ..................................................
FD962491       <-- GGTGAGCTTCGTCGGAATCGAAGACGCAGTCGACGGACGAGCCTTCATGA
EY912836       <-- GGTGAGCTTCGTCGGAATCGAAGACGCAGTCGACGGACGAGCCTTCATGA
EY915687       <-- GGTGAGCTTCGTCGGAATCGAAGACGCAGTCGACGGACGAGCCTTCATGA
FD964482       <-- GGTGAGCTTCGTCGGAATCGAAGACGCAGTCGACGGACGAGTCTTCATGA
EV573893       --> ..................................................
FD959037       --> GGTGAGCTTCGTCGGAATCGAAGACGCAGTCGACGGACGAGCCTTCATGA
EW721851       --> GGTGAGCTTCGTCGGAATCGAAGACGCAGTCGTCAGACGAGGCTTCATGA
EY909180       --> ..................................................
EY911483       --> ..................................................

               701    -    751
UN16913        --> AGGAGGAAGGAGTCTGCGGCGGGTCCATGTTCGGTGCGACCTTCTTCCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569325       <-- ..................................................
FD962491       <-- AGGAGGAAGGAGTCTGCGGCGGGTCCATGTTCGGTGCGACCTTCTTCCAT
EY912836       <-- AGGAGGAAGGAGTCTGCGGCGGGTCCATGTTCGGTGCGACCTTCTTCCAT
EY915687       <-- AGGAGGAAGGAGTCTGCGGCGGGTCCATGTTCGGTGCGACCTTCTTCCAT
FD964482       <-- AGGAGGAAGGAGTCTGGGGCGGGTCCATGTTCGGTGCGACCTTCTTCCAT
EV573893       --> ..................................................
FD959037       --> AGGAGGAAGGAGTCTGCGGCGGGTCCATG.....................
EW721851       --> Atga..............................................
EY909180       --> ..................................................
EY911483       --> ..................................................

               751    -    801
UN16913        --> GACTCCACGAACGTCGAATCGATCGTCGACGGAACTTCCGTTGAAAAGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569325       <-- ..................................................
FD962491       <-- GACTCCACGAACGTCGAATCGATCGTCGACGGAACTTCCGTTGAAAAGGC
EY912836       <-- GACTCCACGAACGTCGAATCGATCGTCGACGGAACTTCCGTTGAAAAGGC
EY915687       <-- GACTCCACGAACGTCGAATCGATCGTCGACGGAACTTCCGTTGAAAAGGC
FD964482       <-- GACTCCACGAACGTCGAATCGATCGTCGACGGAACTTCCGTTGAAAAGGC
EV573893       --> ..................................................
FD959037       --> ..................................................
EW721851       --> ..................................................
EY909180       --> ..................................................
EY911483       --> ..................................................

               801    -    851
UN16913        --> ACGAACCGTCGCCGATTTGGAGGATCCGGCGGCCACGGATCGGGAGAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569325       <-- ..................................................
FD962491       <-- ACGAACCGTCGCCGATTTGGAGGATCCGGCGGCCACGGATCGGGAGAGGA
EY912836       <-- ACGAACCGTCGCCGATTTGGAGGATCCGGCGGCCACGGATCGGGAGAGGA
EY915687       <-- ACGAACCGTCGCCGATTTGGAGGATCCGGCGGCCACGGATCGGGAGAGGA
FD964482       <-- ACGAGCCGTCGCCGATTTGGAGGATCCGGCGGTGATGGATCGGGAGAGGA
EV573893       --> ..................................................
FD959037       --> ..................................................
EW721851       --> ..................................................
EY909180       --> ..................................................
EY911483       --> ..................................................

               851    -    901
UN16913        --> GGCGAGAAGCTTGTCTCAACATGGCGGCGATTTTGGTTGTGATGAATCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569325       <-- ..................................................
FD962491       <-- GGCGAGAAGCTTGTCTCAACATGGCGGCGATTTTGGTTGTGATGAATCTA
EY912836       <-- GGCGAGAAGCTTGTCTCAACATGGCGGCGATTTTGGTTGTGATGAATCTA
EY915687       <-- GGCGAGAAGCTTGTCTCAACATGGCGGCGATTTTGGTTGTGATGAATCTA
FD964482       <-- GGCGAGAAGCTTGTCTCAACATGGCGGCGATTTTGGTGGTGATGAATCTA
EV573893       --> ..................................................
FD959037       --> ..................................................
EW721851       --> ..................................................
EY909180       --> ..................................................
EY911483       --> ..................................................

               901    -    951
UN16913        --> CGTCGCTGATCC
                   ~~~~~~~~~~~~
EV569325       <-- ............
FD962491       <-- CGTCcc......
EY912836       <-- CGTCcc......
EY915687       <-- CGTCcc......
FD964482       <-- CGTCGCTGATCC
EV573893       --> ............
FD959037       --> ............
EW721851       --> ............
EY909180       --> ............
EY911483       --> ............