1      -     51
UN16946        --> GGGACCGCACGCTATCTCC-TCCCCTGTGAACGCTTCGCTCTAAAAGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529598       <-- ..................................................
FD967252       <-- ..................................................
FD564811       --> GGGACCGCACGCTATCTCCCTCCCCTGCAAACGCTTCGCTCTAAAGGAAA
EW713585       --> .GGACCGCACGCTATCTCC-TCCCCTGTGAACGCTTCGCTCTAAGAGAAA
EW713586       --> .GGACCGCACGCTATCTCC-TCCCCAGTGAACGCTTCGCTCTAAGAGAAA
EX897914       --> .GGACCGCACGCTATCTCC-TCCCCTGTGAACGCTTCGCTCTAAAAGAAA
EY949875       --> .GGACCGCACGCTATCTCC-TCCCCTGTGAACGCTTCGCTCTAAAAGAAA
EX895231       --> ....ggGCACGCTATCTCC-TCCCCTGTGAACGCTTCGCTCTAAAAGAAA
FD533410       --> ......ggACGCTATCTCC-TCCCCTGTGAACGCTTCGCTCTAAAAGAAA

               51     -    101
UN16946        --> AACAGAGCTAAGAGGAGGAGAGAAAACAAACAATTAAACTTTTCATCACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529598       <-- ..................................................
FD967252       <-- ..................................................
FD564811       --> GACAGAGCTAAGAGGAGGAGAGAA--CAAACAATTAAACTTTTCACCACG
EW713585       --> AACAGAGCTAAGAGGAGGAGAGAAAACAAACAATTAAACTTTTCATCACG
EW713586       --> AACAGAGCTAAGAGGAGGAGAGAAAACAAACAATTAAACTTTTCATCACG
EX897914       --> AACAGAGCTAAGAGGAGGAGAGAAAACAAACAATTAAACTTTTCATCACG
EY949875       --> AACAGAGCTAAGAGGAGGAGAGAAAACAAACAATTAAACTTTTCATCACG
EX895231       --> AACAGAGCTAAGAGGAGGAGAGAAAACAAACAATTAAACTTTTCATCACG
FD533410       --> AACAGAGCTAAGAGGAGGAGAGAAAACAAACAATTAAACTTTTCATCACG

               101    -    151
UN16946        --> TGGAAAGCTTGATATAAGATCGTGGAGAGAGAGCAATATATACAAAATTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529598       <-- ..................................................
FD967252       <-- ..................................................
FD564811       --> TGGAAAGCTTGATATAAGATCGTAGAGAGTGAGCAATATATAGAAAATTA
EW713585       --> TGGAAAGCTTGATATAAGATCGTGGAGAGAGAGCAATATATACAAAATTA
EW713586       --> TGGAAAGCTTGATATAAGATCGTGGAGAGAGAGCAATATATACAAAATTA
EX897914       --> TGGAAAGCTTGATATAAGATCGTGGAGAGAGAGCAATATATACAAAATTA
EY949875       --> TGGAAAGCTTGATATAAGATCGTGGAGAGAGAGCAATATATACAAAATTA
EX895231       --> TGGAAAGCTTGATATAAGATCGTGGAGAGAGAGCAATATATACAAAATTA
FD533410       --> TGGAAAGCTTGATATAAGATCGTAGAGAGTGAGCAATATATAGAAAATTA

               151    -    201
UN16946        --> ATCAAAAGGTAAATGAGCACGACGGGTCCGGCAAGGAAAAGCTCACTAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529598       <-- ..................................................
FD967252       <-- ..................................................
FD564811       --> ATCAAAAGGTAAATGAGCACGACGGGTCCGGCAAAGAAAAGCTCGCTAAT
EW713585       --> ATCAAAAGGTAAATGAGCACGACGGGTCCGGCAAGGAAAAGCTCACTAAT
EW713586       --> ATCAAAAGGTAAATGAGCACGACGGGTCCGGCAAGGAAAAGCTCACTAAT
EX897914       --> ATCAAAAGGTAAATGAGCACGACGGGTCCGGCAAGGAAA-GCTCACTAAT
EY949875       --> ATCAAAAGGTAAATGAGCACGACGGGTCCGGCAAGGAAAAGCTCACTAAT
EX895231       --> ATCAAAAGGTAAATGAGCACGACGGGTCCGGCAAGGAAAAGCTCACTAAT
FD533410       --> ATCAAAAGGTAAATGAGCACGACGGGTCCGGCAAAGAAAAGCTCGCTAAT

               201    -    251
UN16946        --> GGAAACTCTCTTGGGACTCCTTAGAATCCGCATCAAACGTGGCGTCAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529598       <-- .......................GAATCCGCATCAAACGTGGCGTCAATC
FD967252       <-- ..................................................
FD564811       --> GGAAACTCTCTTGGGACTCCTTAGAATCCGCATCAAACGTGGCGTCAATC
EW713585       --> GGAAACTCTCTTGGGACTCCTTAGAATCCGCATCAAACGTGGCGTCAATC
EW713586       --> GGAAACTCTCTTGGGACTCCTTAGAATCCGCATCAAACGTGGCGTCAATC
EX897914       --> GGAAACTCTCTTGGGACTCCTTAGAATCCGCATCAAACGTGGCGTCAATC
EY949875       --> GGAAACTCTCTTGGGACTCCTTAGAATCCGCATCAAACGTGGCGTCAATC
EX895231       --> GGAAACTCTCTTGGGACTCCTTAGAATCCGCATCAAACGTGGCGTCAATC
FD533410       --> GGAAACTCTCTTGGGACTCCTTAGAATCCGCATCAAACGTGGCGTCAATC

               251    -    301
UN16946        --> TCGCCGTCCGTGACATTAATAGCAGTGATCCTTACGTCGTCGTTAAAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529598       <-- TCGCCGTCCGTGACATTAATAGCAGTGATCCTTACGTCGTCGTTAAAATG
FD967252       <-- ..................................................
FD564811       --> TCGCCGTCCGTGACATTAATAGCAGTGATCCTTACGTCGTCGTTAAAATG
EW713585       --> TCGCCGTCCGTGACATTAATAGCAGTGATCCTTACGTCGTCGTTAAAATG
EW713586       --> TCGCCGTCCGTGACATTAATAGCAGTGATCCTTACGTCGTCGTTAAAATG
EX897914       --> TCGCCGTCCGTGACATTAATAGCAGTGATCCTTACGTCGTCGTTAAAATG
EY949875       --> TCGCCGTCCGTGACATTAATAGCAGTGATCCTTACGTCGTCGTTAAAATG
EX895231       --> TCGCCGTCCGTGACATTAATAGCAGTGATCCTTACGTCGTCGTTAAAATG
FD533410       --> TCGCCGTCCGTGACATTAATAGCAGTGATCCTTACGTCGTCGTTAAAATG

               301    -    351
UN16946        --> GGCAAACAGAAATTGAAAACTCGTGTCATCAACAAAGACGTAAATCCAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529598       <-- GGCAAACAGAAATTGAAAACTCGTGTCATCAACAAAGACGTAAATCCAGA
FD967252       <-- ..................................................
FD564811       --> GGCAAACAGAAATTGAAAACTCGTGTCATCAACAAAGACGTAAATCCAGA
EW713585       --> GGCAAACAGAAATTGAAAACTCGTGTCATCAACAAAGACGTAAATCCAGA
EW713586       --> GGCAAACAGAAATTGAAAACTCGTGTCATCAACAAAGACGTAAATCCAGA
EX897914       --> GGCAAACAGAAATTGAAAACTCGTGTCATCAACAAAGACGTAAATCCAGA
EY949875       --> GGCAAACAGAAATTGAAAACTCGTGTCATCAACAAAGACGTAAATCCAGA
EX895231       --> GGCAAACAGAAATTGAAAACTCGTGTCATCAACAAAGACGTAAATCCAGA
FD533410       --> GGCAAACAGAAATTGAAAACTCGTGTCATCAACAAAGACGTAAATCCAGA

               351    -    401
UN16946        --> ATGGAACGAAGATCTGACTCTCTCCGTCACGGACCCCAGTCTTACCGTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529598       <-- ATGGAACGAAGATCTGACCCTCTCCGTCACGGACCCCAGTCTTACCGTTC  Raphanus raphanistrum subsp. maritimus
FD967252       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD564811       --> ATGGAACGAAGATCTGACCCTCTCCGTCACGGACCCCAGTCTTACCGTTC  Raphanus sativus var. oleiformis
EW713585       --> ATGGAACGAAGATCTGACTCTCTCCGTCACGGACCCCAGTCTTACCGTTC  Raphanus sativus var. oleiformis
EW713586       --> ATGGAACGAAGATCTGACTCTCTCCGTCACGGACCCCAGTCTTACCGTTC  Raphanus sativus var. oleiformis
EX897914       --> ATGGAACGAAGATCTGACTCTCTCCGTCACGGACCCCAGTCTTACCGTTC  Raphanus sativus cv Early Scarlet Globe
EY949875       --> ATGGAACGAAGATCTGACTCTCTCCGTCACGGACCCCTGTCTTACCGTTC  Raphanus sativus cv Rat-Tail Radish #3870
EX895231       --> ATGGAACGAAGATCTGACTCTCTCCGTCACGGACCCCAGTCTTACCGTTC  Raphanus sativus cv Early Scarlet Globe
FD533410       --> ATGGAACGAAGATCTGACCCTCTCCGTCACGGACCCCAGTCTTACCGTTC  Raphanus raphanistrum subsp. maritimus

               401    -    451
UN16946        --> TCTTGACGGTGTACGACCACGACATGTTTAGCAAGGACGACAAGATGGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529598       <-- TCTTGACGGTGTACGACCACGACATGTTTAGCAAGGACGACAAGATGGGT
FD967252       <-- ...................CGACATGTTTAGCAAGGACGACAAGATGGGT
FD564811       --> TCTTGACGGTGTACGACCACGACATGTTTAGCAAGGACGACAAGATGGGT
EW713585       --> TCTTGACGGTGTACGACCACGACATGTTTAGCAAGGACGACAAGATGGGT
EW713586       --> TCTTGACGGTGTACGACCACGACATGTTTAGCAAGGACGACAAGATGGGT
EX897914       --> TCTTGACGGTGTACGACCACGACATGTTTAGCAAGGACGACAAGATGGGT
EY949875       --> TCTTGACGGTGTACGACCACGACATGTTTAGCAAGGACGACAAGATGGGT
EX895231       --> TCTTGACGGTGTACGACCACGACATGTTTAGCAAGGACGACAAGATGGGT
FD533410       --> TCTTGACGGTGTACGACCACGACATGTTTAGCAAGGACGACAAGATGGGT

               451    -    501
UN16946        --> GATGCAGAGTTCGAGATAAAGCCCTATATCGAGGCTTTAAAGATGCAACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529598       <-- GATGCAGAGTTCGAGATAAAGCCGTATATCGAGGCTTTAAAAATGCAACT  Raphanus raphanistrum subsp. maritimus
FD967252       <-- GATGCAGAGTTCGAGATAAAGCCGTATATCGAGGCTTTAAAGATGCAACT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD564811       --> GATGCAGAGTTCGAGATAAAGCCGTATATCGAGGCTTTAAAGATGCAACT  Raphanus sativus var. oleiformis
EW713585       --> GATGCAGAGTTCGAGATAAAGCCCTATATCGAGGCTTTAAAGATGCAACT  Raphanus sativus var. oleiformis
EW713586       --> GATGCAGAGTTCGAGATAAAGCCCTATATCGAGGCTTTAAAGATGCAACT  Raphanus sativus var. oleiformis
EX897914       --> GATGCAGAGTTCGAGATAAAGCCCTATATCGAGGCTTTAAAGATGCAACT  Raphanus sativus cv Early Scarlet Globe
EY949875       --> GATGCAGAGTTCGAGATAAAGCCCTATATCGAGGCTTTAAAGATGCAACT  Raphanus sativus cv Rat-Tail Radish #3870
EX895231       --> GATGCAGAGTTCGAGATAAAGCCCTATATCGAGGCTTTAAAGATGCAACT  Raphanus sativus cv Early Scarlet Globe
FD533410       --> GATGCAGAGTTCGAGATAAAGCCGTATATCGAGGCTTTAAAAATGCAACT  Raphanus raphanistrum subsp. maritimus

               501    -    551
UN16946        --> TGACGGTCTTCCTAGTGGTACCATCGTCACCACGGTTCAGCCATGTCGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529598       <-- TGACGGTCTTCCCAGTGGTACCATCGTCACCACGGTTCAGCCATGTCGTC
FD967252       <-- TGACGGTCTTCCTAGTGGTACCATCGTCACCACGGTTCAGCCATGTCGTC
FD564811       --> TGACGGTCTCCCTAGTGGTACCATCGTCACCACGGTTCAGCCATGTCGTC
EW713585       --> TGACGGTCTTCCTAGTGGTACCATCGTCACCACGGTTCAGCCATGTCGTC
EW713586       --> TGACGGTCTTCCTAGTGGTACCATCGTCACCACGGTTCAGCCATGTCGTC
EX897914       --> TGACGGTCTTCCTAGTGGTACCATCGTCACCACGGTTCAGCCATGTCGTC
EY949875       --> TGACGGTCTTCCTAGTGGTACCATCGTCACCACGGTTCAGCCATGTCGTC
EX895231       --> TGACGGTCTTCCTAGTGGTACCATCGTCACCACGGTTCAGCCATGTCGTC
FD533410       --> TGACGGTCTTCCCAGTGGTACCATCGTCACCACGGTTCAGCCATGTCGTC

               551    -    601
UN16946        --> GCAACTGTCTAGCTGAGGAGTCTAAAATAACTTGGG-TCGACGGTAAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529598       <-- GCAACTGTCTAGCTGAGGAGTCTAAAATAACTTGGG-TCGACGGTAAGCT
FD967252       <-- GCAACTGTCTAGCTGAGGAGTCTAAAATAACTTGGG-TCGACGGTAAGCT
FD564811       --> GCAACTGTCTAGCTGAGGAGTCTAAAATAACTTGGG-TCGACGGTAAGCT
EW713585       --> GCAACTGTCTAGCTGAGGAGTCTAAAATAACTTGGGGTCGACGGTAAGCT
EW713586       --> GCAACTGTCTAGCTGAGGAGTCTAAAATAACTTGGG-TCGACGGTAAGCT
EX897914       --> GCAACTGTCTAGCTGAGGAGTCTAAAATAACTTGGG-TCGACGGTAAGCT
EY949875       --> GCAACTGTCTAGCTGAGGAGTCTAAAATAACTTGGG-TCGACGGTAAGCT
EX895231       --> GCAACTGTCTAGCTGAGGAGTCTAAAATAACTGGGG-TCGACGGTAAGCT
FD533410       --> GCAACTGTCTAGCTGAGGAGTCTAAAATAACTTGGG-TCGACGGTAAGCT

               601    -    651
UN16946        --> CGTCCAGGATCTCGTTCTCAGATTACGACATGTTGAGTG-TGGAGAGGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529598       <-- CGTCCAGGATCTCGTTCTCAGATTACGACATGTTGAATG-TGGAGAGGTC  Raphanus raphanistrum subsp. maritimus
FD967252       <-- CGTCCAGGATCTCGTTCTCAGATTACGACATGTTGAATG-TGGAGAGGTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD564811       --> CGTCCAGGATCTCGTTCTCAGATTACGACATGTTGAATG-TGGAGAGGTC  Raphanus sativus var. oleiformis
EW713585       --> CGTCCAGGATCTCGTTCTCAGTTTACGACATGTTGAGTGGTGGAGAGGTC  Raphanus sativus var. oleiformis
EW713586       --> CGTCCAGGATCTCGTTCTCAGTTTACGACATGTTGAGTG-TGGAGAGGTC  Raphanus sativus var. oleiformis
EX897914       --> CGTCCAGGATCTCGTTCTCAGATTACGACATGTTGAGTG-GGGAGAGGTC  Raphanus sativus cv Early Scarlet Globe
EY949875       --> CGTCCAGGATCTCGTTCTCAGATTACGACATGTTGAGTG-TAGAGAGGTC  Raphanus sativus cv Rat-Tail Radish #3870
EX895231       --> CGTCCAGGATCTCGTTCTCAGATTACGACATGTTGAGTG-TGGAGAGGTC  Raphanus sativus cv Early Scarlet Globe
FD533410       --> CGTCCAGGATCTCGTTCTCAGATTACGACATGTTGAATG-TGGAGAGGTC  Raphanus raphanistrum subsp. maritimus

               651    -    701
UN16946        --> GAGGCTCAGCTTCAGTGGATTGACCTCCCTGGCTCCAAGGGTCTATAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529598       <-- GAGGCTCAGCTTCAGTGGATTGACCTCCCTGGCTCCAAGGGTCTGTAAAA
FD967252       <-- GAGGCTCAGCTTCAGTGGATTGACCTCCCTGGCTCCAAGGGTCTATAAAA
FD564811       --> GAGGCTCAGCTTCAGTGGATTGACCTCCCTGGCTCCAAGGGTCTATAAAA
EW713585       --> GAGGCTCAGCTTCAGTGGATTGACCTCCCTGGCTCCAAGGGTCTATAAA-
EW713586       --> GAGGCTCAGCTTCAGTGGATTGACCTCCCTGGCTCCAAGGGTCTATAAAA
EX897914       --> GAGGCTCAGCTTCAGTGGATTGACCTCCCTGGCTCCA--GGTCTATAAAA
EY949875       --> GAGGCTCAGCTTCAGTGGATTGACCTCCCTGGCTCCAAGGGTCTATAAAA
EX895231       --> GAGGCTCAGCTTCAGTGGATTGACCTCCCTGGCTCCAAGGGTCTATA...
FD533410       --> GAGGCTCAGCTTCAGTGGATTGACCTCCCTGGCTCCAAGGGTCTGTAAAA

               701    -    751
UN16946        --> CGTGTCTTCTATTTATAATTACCGTTACTATTTGAGGGTTTTCTTTTGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529598       <-- CGTCTCTTCTATTTATAATTACCGTTACTATTTGAGGGTTTTCTTTTGAA
FD967252       <-- CGTCTCTTCTATTTATAATTACCGTTACTATTTGAGGGTTTTCTTTTGAA
FD564811       --> CGTCTCCTCTATTTATAATTACCGTTACTATTTGAGGGTTTTCTTTTGA-
EW713585       --> CGTGTCTTCTATTTATAATTACCGTTACTATTTGAGGGTTTTCTTTTGAA
EW713586       --> CGTGTCTTCTATTTATAATTACCGTTACTATTTGAGGGTTTTCTTTTGAA
EX897914       --> CGTGTCT-CTATTTATA-TTACCGT-ACTATTTGAGGGTTTTCTTTTGA-
EY949875       --> CGTGTCTT..........................................
EX895231       --> ..................................................
FD533410       --> CGTCTCTTCTATTTATAATTACCGTTACTATT..................

               751    -    801
UN16946        --> TTTGAATTAAACCTCA-AAAACAAAACAAGAACTGAACCATGTTGAAGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529598       <-- TTTGAATTAAACCTCA-AAAACAAAACAAGAACTGAACCATGCTGAAGTA
FD967252       <-- TTTGAATTAAACCTCA-AAAACAAAACAAGAACCGAACCATGTTGAAGTA
FD564811       --> TTTGA-TTAAACCTCAgaa...............................
EW713585       --> TTTGAATTAA-CCTCAGAAAACA...........................
EW713586       --> TTTGAATTAAACCTCAGAAAACAAAACAAGAACTGAACCATGTTGAAGTA
EX897914       --> TTTGA-TTAAAC-TCA-GAAACAAAcagac....................
EY949875       --> ..................................................
EX895231       --> ..................................................
FD533410       --> ..................................................

               801    -    851
UN16946        --> CAAAACGCGTATTAATCCATGCATGAGAG--TATGAGGATTAAGAACGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529598       <-- CAAAACGCGTATTAATCCATGCATGAGAG----TGAGGATTAAGAACGTT
FD967252       <-- CAAAACGCGTATTAATCCATGCATGAGAG--TATGAGGATTAAGAACGTT
FD564811       --> ..................................................
EW713585       --> ..................................................
EW713586       --> CAAAACGCGTATTAATCCATGCATGAGAGAGTATGA-GATT-AG-ACGTT
EX897914       --> ..................................................
EY949875       --> ..................................................
EX895231       --> ..................................................
FD533410       --> ..................................................

               851    -    901
UN16946        --> TGAGGGATGTTTTGTTTCCCATATGGTGATCGAGTCGTATATATTATTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529598       <-- TGAGAGATGTTTTGTTTCCCATATGGTGATCGAGTCGTATATATTATTGT
FD967252       <-- TGAGGGATGTTTTGTTTCCCATATGGTGATCGAGTCGTATATATTATTGT
FD564811       --> ..................................................
EW713585       --> ..................................................
EW713586       --> TGAGGatgt.........................................
EX897914       --> ..................................................
EY949875       --> ..................................................
EX895231       --> ..................................................
FD533410       --> ..................................................

               901    -    951
UN16946        --> CCTTGTATATTTGGATTAGCTATGTGCCTTGAATAAAAGCTTTGATTACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529598       <-- CCTTGTATATTTGGATTAGCTATGTGCCTTGAATAAAAGCTTTGATTACC
FD967252       <-- CCTTGTATATTTGGATTAGCTATGTGCCTTGAATAAAAGCTTTGATTACC
FD564811       --> ..................................................
EW713585       --> ..................................................
EW713586       --> ..................................................
EX897914       --> ..................................................
EY949875       --> ..................................................
EX895231       --> ..................................................
FD533410       --> ..................................................

               951    -   1001
UN16946        --> CCGAA
                   ~~~~~
FD529598       <-- ac...
FD967252       <-- CCGAA
FD564811       --> .....
EW713585       --> .....
EW713586       --> .....
EX897914       --> .....
EY949875       --> .....
EX895231       --> .....
FD533410       --> .....